Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717950 | AES95291.1 | 93.966 | 232 | 13 | 1 | 1 | 231 | 1 | 232 | 2.71e-144 | 413 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717950 | G7K024 | 93.966 | 232 | 13 | 1 | 1 | 231 | 1 | 232 | 1.29e-144 | 413 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0717950 | TF | C2H2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717950 | MtrunA17_Chr5g0406791 | 93.827 | 162 | 9 | 1 | 1 | 161 | 1 | 162 | 3.91e-109 | 311 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0717950 | AT4G35700.1 | 31.351 | 185 | 104 | 7 | 75 | 245 | 98 | 273 | 1.62e-17 | 80.1 |
| Msa0717950 | AT4G35610.1 | 54.000 | 50 | 23 | 0 | 106 | 155 | 129 | 178 | 2.30e-13 | 68.2 |
Find 97 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTGTTTCATCATCCTCTTC+TGG | 0.204274 | 5_1:-11970485 | None:intergenic |
| GTGGCTGGTGTGGTGTTGTT+TGG | 0.232681 | 5_1:-11969093 | None:intergenic |
| GCATCCAGAGCGTGCTCATC+GGG | 0.273262 | 5_1:+11969470 | Msa0717950:CDS |
| GCAAACTCCCTCTTGCATTC+TGG | 0.280646 | 5_1:-11969414 | None:intergenic |
| CAGATGAACCGTCGGCAGTT+AGG | 0.305066 | 5_1:-11969302 | None:intergenic |
| TCTTGCATTCTGGACATGTT+GGG | 0.316539 | 5_1:-11969404 | None:intergenic |
| TGGCTGGTGTGGTGTTGTTT+GGG | 0.349412 | 5_1:-11969092 | None:intergenic |
| GCCGGTGCAGGTGCTGGTGC+AGG | 0.351380 | 5_1:-11970410 | None:intergenic |
| GCCACATGGAAAGCTGCGTT+TGG | 0.354309 | 5_1:+11969435 | Msa0717950:CDS |
| CTCTTGCATTCTGGACATGT+TGG | 0.358689 | 5_1:-11969405 | None:intergenic |
| GTTGTTTGGGCTTGACTCAT+TGG | 0.370557 | 5_1:-11969079 | None:intergenic |
| GTGCAGGTGCAGGTGGTGCT+TGG | 0.376757 | 5_1:-11970394 | None:intergenic |
| AGATGAACCGTCGGCAGTTA+GGG | 0.382592 | 5_1:-11969301 | None:intergenic |
| TACCCTCATCACCACCATTT+GGG | 0.382708 | 5_1:-11969239 | None:intergenic |
| TCTTCATTTGCAGCCGGTGC+AGG | 0.385425 | 5_1:-11970422 | None:intergenic |
| CTGATGGAGGGTCTTTCACT+TGG | 0.398758 | 5_1:-11969377 | None:intergenic |
| CCACATGGAAAGCTGCGTTT+GGG | 0.399070 | 5_1:+11969436 | Msa0717950:CDS |
| GCAGGTGCTGGTGCAGGTGC+AGG | 0.402832 | 5_1:-11970404 | None:intergenic |
| TTTGCAGCCGGTGCAGGTGC+TGG | 0.405223 | 5_1:-11970416 | None:intergenic |
| TTACCCTCATCACCACCATT+TGG | 0.414014 | 5_1:-11969240 | None:intergenic |
| TTTGGGCTTGACTCATTGGC+AGG | 0.414848 | 5_1:-11969075 | None:intergenic |
| GGGTCCTCTGCTGGTGGTAG+TGG | 0.416926 | 5_1:+11970353 | Msa0717950:CDS |
| GACCATCAGAACCAACTTGT+TGG | 0.436035 | 5_1:-11969329 | None:intergenic |
| ATCATCATCATCAGTTAGTT+CGG | 0.443434 | 5_1:-11969211 | None:intergenic |
| TCCTCAGTGTTTGTCACAGC+GGG | 0.444401 | 5_1:-11969153 | None:intergenic |
| TTGTTTACAGGTGATGGTCT+TGG | 0.452593 | 5_1:+11970251 | Msa0717950:intron |
| CGTCTTTCTTCATTTGCAGC+CGG | 0.453122 | 5_1:-11970428 | None:intergenic |
| TCATCATCCTCTTCTGGAGG+TGG | 0.459723 | 5_1:-11970479 | None:intergenic |
| ATGGTCATGTCTTCAAGAAA+AGG | 0.461097 | 5_1:+11969346 | Msa0717950:CDS |
| GTTCAGCCAAGGTGCGTTGA+GGG | 0.469269 | 5_1:-11969119 | None:intergenic |
| ATCCAACAAGTTGGTTCTGA+TGG | 0.472826 | 5_1:+11969327 | Msa0717950:CDS |
| GAAAACACCGGAGGAAGTCC+TGG | 0.473695 | 5_1:+11969188 | Msa0717950:CDS |
| CAAGGTGCGTTGAGGGGAAG+TGG | 0.482830 | 5_1:-11969112 | None:intergenic |
| TATATACCCTCAGCAGGAAC+GGG | 0.491670 | 5_1:-11969528 | None:intergenic |
| CACTTCCCCTCAACGCACCT+TGG | 0.498843 | 5_1:+11969113 | Msa0717950:CDS |
| CATGTTGGGGATCCTGATGG+AGG | 0.503638 | 5_1:-11969390 | None:intergenic |
| GGACATGTTGGGGATCCTGA+TGG | 0.504468 | 5_1:-11969393 | None:intergenic |
| CTTGCATTCTGGACATGTTG+GGG | 0.506162 | 5_1:-11969403 | None:intergenic |
| GGTGCTGGTGCAGGTGCAGG+TGG | 0.509044 | 5_1:-11970401 | None:intergenic |
| TCAACCGCAGGGTCCTCTGC+TGG | 0.510398 | 5_1:+11970344 | Msa0717950:CDS |
| CAAGTGAAAGACCCTCCATC+AGG | 0.513855 | 5_1:+11969378 | Msa0717950:CDS |
| GTGCGTTGAGGGGAAGTGGC+TGG | 0.516360 | 5_1:-11969108 | None:intergenic |
| CTTGGCGACAAGATCAATGA+AGG | 0.517419 | 5_1:+11970269 | Msa0717950:CDS |
| AGCATCCAGAGCGTGCTCAT+CGG | 0.517955 | 5_1:+11969469 | Msa0717950:CDS |
| CGTTGCACCCGTTCCTGCTG+AGG | 0.526903 | 5_1:+11969521 | Msa0717950:CDS |
| AAATGAAGAAAGACGGAGAC+GGG | 0.527143 | 5_1:+11970436 | Msa0717950:CDS |
| GTAATATATATACCCTCAGC+AGG | 0.531989 | 5_1:-11969534 | None:intergenic |
| GATGATGATTTGATCCCAAA+TGG | 0.535324 | 5_1:+11969225 | Msa0717950:CDS |
| TCATCTGTTATCCAACAAGT+TGG | 0.537358 | 5_1:+11969318 | Msa0717950:CDS |
| GTTTCATCATCCTCTTCTGG+AGG | 0.539642 | 5_1:-11970482 | None:intergenic |
| CATCATCAGTTAGTTCGGCC+AGG | 0.545384 | 5_1:-11969206 | None:intergenic |
| ATGTTGGGGATCCTGATGGA+GGG | 0.546248 | 5_1:-11969389 | None:intergenic |
| ATATATACCCTCAGCAGGAA+CGG | 0.548442 | 5_1:-11969529 | None:intergenic |
| AGTTCGGCCAGGACTTCCTC+CGG | 0.548973 | 5_1:-11969195 | None:intergenic |
| ACCTGCACCAGCACCTGCAC+CGG | 0.556575 | 5_1:+11970409 | Msa0717950:CDS |
| AGATCGATTCAATCAACCGC+AGG | 0.558905 | 5_1:+11970332 | Msa0717950:CDS |
| TTGAGGGGAAGTGGCTGGTG+TGG | 0.560312 | 5_1:-11969103 | None:intergenic |
| CGAGTTGCCACCTCCAGAAG+AGG | 0.565350 | 5_1:+11970472 | Msa0717950:CDS |
| GGTGCAACGGTGCTAAAAGT+TGG | 0.571929 | 5_1:-11969507 | None:intergenic |
| AGGGTAACGAAGAAGACGAT+GGG | 0.573776 | 5_1:+11969256 | Msa0717950:CDS |
| CTCAGCAGGAACGGGTGCAA+CGG | 0.574361 | 5_1:-11969520 | None:intergenic |
| GTTGCACCCGTTCCTGCTGA+GGG | 0.581395 | 5_1:+11969522 | Msa0717950:CDS |
| TCAGTGTTTGTCACAGCGGG+TGG | 0.591498 | 5_1:-11969150 | None:intergenic |
| GCAACGGTGCTAAAAGTTGG+TGG | 0.591524 | 5_1:-11969504 | None:intergenic |
| ACCGCAGGGTCCTCTGCTGG+TGG | 0.592667 | 5_1:+11970347 | Msa0717950:CDS |
| CATGTCTTCAAGAAAAGGAA+AGG | 0.594271 | 5_1:+11969351 | Msa0717950:CDS |
| ATCCAGAGCGTGCTCATCGG+GGG | 0.598304 | 5_1:+11969472 | Msa0717950:CDS |
| ACGGTGCTAAAAGTTGGTGG+AGG | 0.599469 | 5_1:-11969501 | None:intergenic |
| TTCAGCCAAGGTGCGTTGAG+GGG | 0.602294 | 5_1:-11969118 | None:intergenic |
| TTGGGCTTGACTCATTGGCA+GGG | 0.602976 | 5_1:-11969074 | None:intergenic |
| TGTTCAGCCAAGGTGCGTTG+AGG | 0.606127 | 5_1:-11969120 | None:intergenic |
| ATCCCAAATGGTGGTGATGA+GGG | 0.607792 | 5_1:+11969237 | Msa0717950:CDS |
| CAACATGTCCAGAATGCAAG+AGG | 0.611183 | 5_1:+11969406 | Msa0717950:CDS |
| CGGCTGCAAATGAAGAAAGA+CGG | 0.611738 | 5_1:+11970429 | Msa0717950:CDS |
| TGGCTGATCATGTTCAGCCA+AGG | 0.612094 | 5_1:-11969130 | None:intergenic |
| TGGTAGTGGTCATATCACTA+AGG | 0.615054 | 5_1:+11970367 | Msa0717950:CDS |
| TGAAACCTCTCTGAAAACAC+CGG | 0.622863 | 5_1:+11969176 | Msa0717950:CDS |
| TTGGCGACAAGATCAATGAA+GGG | 0.623712 | 5_1:+11970270 | Msa0717950:CDS |
| GATCCCAAATGGTGGTGATG+AGG | 0.627502 | 5_1:+11969236 | Msa0717950:CDS |
| ATCCTCAGTGTTTGTCACAG+CGG | 0.628423 | 5_1:-11969154 | None:intergenic |
| CGGTGCTAAAAGTTGGTGGA+GGG | 0.635586 | 5_1:-11969500 | None:intergenic |
| GCAAGAGGGAGTTTGCCACA+TGG | 0.640414 | 5_1:+11969421 | Msa0717950:CDS |
| GAGGGTAACGAAGAAGACGA+TGG | 0.641669 | 5_1:+11969255 | Msa0717950:CDS |
| ATGACCACTACCACCAGCAG+AGG | 0.645607 | 5_1:-11970357 | None:intergenic |
| TTGGATAACAGATGAACCGT+CGG | 0.650442 | 5_1:-11969310 | None:intergenic |
| CAAATGAAGAAAGACGGAGA+CGG | 0.651782 | 5_1:+11970435 | Msa0717950:CDS |
| GATCGATTCAATCAACCGCA+GGG | 0.655948 | 5_1:+11970333 | Msa0717950:CDS |
| CATCCAGAGCGTGCTCATCG+GGG | 0.656726 | 5_1:+11969471 | Msa0717950:CDS |
| TGGCGACAAGATCAATGAAG+GGG | 0.669025 | 5_1:+11970271 | Msa0717950:CDS |
| GTTATCGCCCTAACTGCCGA+CGG | 0.669184 | 5_1:+11969294 | Msa0717950:CDS |
| CCCAAACGCAGCTTTCCATG+TGG | 0.686185 | 5_1:-11969436 | None:intergenic |
| AACATGTCCAGAATGCAAGA+GGG | 0.691308 | 5_1:+11969407 | Msa0717950:CDS |
| AACCTCTCTGAAAACACCGG+AGG | 0.709220 | 5_1:+11969179 | Msa0717950:CDS |
| ACCACCAGCAGAGGACCCTG+CGG | 0.721168 | 5_1:-11970348 | None:intergenic |
| GGGTAACGAAGAAGACGATG+GGG | 0.737196 | 5_1:+11969257 | Msa0717950:CDS |
| GATGATTTGATCCCAAATGG+TGG | 0.741325 | 5_1:+11969228 | Msa0717950:CDS |
| ACCCGCTGTGACAAACACTG+AGG | 0.799006 | 5_1:+11969152 | Msa0717950:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGACTATATATATAGTTA+GGG | - | chr5_1:11969564-11969583 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | - | chr5_1:11969565-11969584 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | - | chr5_1:11969712-11969731 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | + | chr5_1:11970104-11970123 | Msa0717950:intron | 15.0% |
| !! | TAAGACTATATATATAGTTA+GGG | - | chr5_1:11969564-11969583 | None:intergenic | 15.0% |
| !! | ATAAGACTATATATATAGTT+AGG | - | chr5_1:11969565-11969584 | None:intergenic | 15.0% |
| !! | AAAAAATTAGATCTAAATCA+TGG | - | chr5_1:11969712-11969731 | None:intergenic | 15.0% |
| !! | AAATGATTTGAAAAAAACTT+AGG | + | chr5_1:11970104-11970123 | Msa0717950:intron | 15.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | + | chr5_1:11969609-11969628 | Msa0717950:intron | 20.0% |
| !!! | AAAACATCTCAATTATCTTT+TGG | - | chr5_1:11969743-11969762 | None:intergenic | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | - | chr5_1:11969954-11969973 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | - | chr5_1:11970093-11970112 | None:intergenic | 20.0% |
| !!! | AGATTTTGATGTTTTAGTTA+TGG | + | chr5_1:11969609-11969628 | Msa0717950:intron | 20.0% |
| !!! | AAAACATCTCAATTATCTTT+TGG | - | chr5_1:11969743-11969762 | None:intergenic | 20.0% |
| !! | CTAAAACATTCAATTTGAAT+AGG | - | chr5_1:11969954-11969973 | None:intergenic | 20.0% |
| !!! | AAATCATTTTGTTAAAAGAG+TGG | - | chr5_1:11970093-11970112 | None:intergenic | 20.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | + | chr5_1:11969682-11969701 | Msa0717950:intron | 25.0% |
| !! | GAGATGTTTTATGAAAAGTA+TGG | + | chr5_1:11969682-11969701 | Msa0717950:intron | 25.0% |
| ATCATCATCATCAGTTAGTT+CGG | - | chr5_1:11969214-11969233 | None:intergenic | 30.0% | |
| ! | ACATCTCAATTATCTTTTGG+TGG | - | chr5_1:11969740-11969759 | None:intergenic | 30.0% |
| ATAAAGCACACACTCATATA+AGG | - | chr5_1:11970216-11970235 | None:intergenic | 30.0% | |
| TTACGTCGTTTATTGTTTAC+AGG | + | chr5_1:11970239-11970258 | Msa0717950:intron | 30.0% | |
| ATCATCATCATCAGTTAGTT+CGG | - | chr5_1:11969214-11969233 | None:intergenic | 30.0% | |
| ! | ACATCTCAATTATCTTTTGG+TGG | - | chr5_1:11969740-11969759 | None:intergenic | 30.0% |
| ATAAAGCACACACTCATATA+AGG | - | chr5_1:11970216-11970235 | None:intergenic | 30.0% | |
| TTACGTCGTTTATTGTTTAC+AGG | + | chr5_1:11970239-11970258 | Msa0717950:intron | 30.0% | |
| GATGATGATTTGATCCCAAA+TGG | + | chr5_1:11969225-11969244 | Msa0717950:CDS | 35.0% | |
| TCATCTGTTATCCAACAAGT+TGG | + | chr5_1:11969318-11969337 | Msa0717950:CDS | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | + | chr5_1:11969346-11969365 | Msa0717950:CDS | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | + | chr5_1:11969351-11969370 | Msa0717950:CDS | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | - | chr5_1:11969537-11969556 | None:intergenic | 35.0% | |
| CGTTTATTGTTTACAGGTGA+TGG | + | chr5_1:11970245-11970264 | Msa0717950:intron | 35.0% | |
| GATGATGATTTGATCCCAAA+TGG | + | chr5_1:11969225-11969244 | Msa0717950:CDS | 35.0% | |
| TCATCTGTTATCCAACAAGT+TGG | + | chr5_1:11969318-11969337 | Msa0717950:CDS | 35.0% | |
| ATGGTCATGTCTTCAAGAAA+AGG | + | chr5_1:11969346-11969365 | Msa0717950:CDS | 35.0% | |
| CATGTCTTCAAGAAAAGGAA+AGG | + | chr5_1:11969351-11969370 | Msa0717950:CDS | 35.0% | |
| GTAATATATATACCCTCAGC+AGG | - | chr5_1:11969537-11969556 | None:intergenic | 35.0% | |
| CGTTTATTGTTTACAGGTGA+TGG | + | chr5_1:11970245-11970264 | Msa0717950:intron | 35.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | + | chr5_1:11969176-11969195 | Msa0717950:CDS | 40.0% |
| GATGATTTGATCCCAAATGG+TGG | + | chr5_1:11969228-11969247 | Msa0717950:CDS | 40.0% | |
| TTGGATAACAGATGAACCGT+CGG | - | chr5_1:11969313-11969332 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | + | chr5_1:11969327-11969346 | Msa0717950:CDS | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | - | chr5_1:11969407-11969426 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | + | chr5_1:11969407-11969426 | Msa0717950:CDS | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | - | chr5_1:11969532-11969551 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | + | chr5_1:11970251-11970270 | Msa0717950:intron | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | + | chr5_1:11970270-11970289 | Msa0717950:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | + | chr5_1:11970367-11970386 | Msa0717950:CDS | 40.0% |
| CAAATGAAGAAAGACGGAGA+CGG | + | chr5_1:11970435-11970454 | Msa0717950:CDS | 40.0% | |
| AAATGAAGAAAGACGGAGAC+GGG | + | chr5_1:11970436-11970455 | Msa0717950:CDS | 40.0% | |
| TCTGTTTCATCATCCTCTTC+TGG | - | chr5_1:11970488-11970507 | None:intergenic | 40.0% | |
| ! | TGAAACCTCTCTGAAAACAC+CGG | + | chr5_1:11969176-11969195 | Msa0717950:CDS | 40.0% |
| GATGATTTGATCCCAAATGG+TGG | + | chr5_1:11969228-11969247 | Msa0717950:CDS | 40.0% | |
| TTGGATAACAGATGAACCGT+CGG | - | chr5_1:11969313-11969332 | None:intergenic | 40.0% | |
| !! | ATCCAACAAGTTGGTTCTGA+TGG | + | chr5_1:11969327-11969346 | Msa0717950:CDS | 40.0% |
| TCTTGCATTCTGGACATGTT+GGG | - | chr5_1:11969407-11969426 | None:intergenic | 40.0% | |
| AACATGTCCAGAATGCAAGA+GGG | + | chr5_1:11969407-11969426 | Msa0717950:CDS | 40.0% | |
| ATATATACCCTCAGCAGGAA+CGG | - | chr5_1:11969532-11969551 | None:intergenic | 40.0% | |
| ! | TTGTTTACAGGTGATGGTCT+TGG | + | chr5_1:11970251-11970270 | Msa0717950:intron | 40.0% |
| TTGGCGACAAGATCAATGAA+GGG | + | chr5_1:11970270-11970289 | Msa0717950:CDS | 40.0% | |
| !! | TGGTAGTGGTCATATCACTA+AGG | + | chr5_1:11970367-11970386 | Msa0717950:CDS | 40.0% |
| CAAATGAAGAAAGACGGAGA+CGG | + | chr5_1:11970435-11970454 | Msa0717950:CDS | 40.0% | |
| AAATGAAGAAAGACGGAGAC+GGG | + | chr5_1:11970436-11970455 | Msa0717950:CDS | 40.0% | |
| TCTGTTTCATCATCCTCTTC+TGG | - | chr5_1:11970488-11970507 | None:intergenic | 40.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | - | chr5_1:11969082-11969101 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | - | chr5_1:11969157-11969176 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+GGG | + | chr5_1:11969237-11969256 | Msa0717950:CDS | 45.0% |
| TACCCTCATCACCACCATTT+GGG | - | chr5_1:11969242-11969261 | None:intergenic | 45.0% | |
| TTACCCTCATCACCACCATT+TGG | - | chr5_1:11969243-11969262 | None:intergenic | 45.0% | |
| AGGGTAACGAAGAAGACGAT+GGG | + | chr5_1:11969256-11969275 | Msa0717950:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | + | chr5_1:11969265-11969284 | Msa0717950:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | - | chr5_1:11969332-11969351 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | - | chr5_1:11969406-11969425 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | - | chr5_1:11969408-11969427 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | + | chr5_1:11969406-11969425 | Msa0717950:CDS | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | - | chr5_1:11969531-11969550 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | + | chr5_1:11970269-11970288 | Msa0717950:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | + | chr5_1:11970271-11970290 | Msa0717950:CDS | 45.0% | |
| ! | AGATCGATTCAATCAACCGC+AGG | + | chr5_1:11970332-11970351 | Msa0717950:CDS | 45.0% |
| ! | GATCGATTCAATCAACCGCA+GGG | + | chr5_1:11970333-11970352 | Msa0717950:CDS | 45.0% |
| CGTCTTTCTTCATTTGCAGC+CGG | - | chr5_1:11970431-11970450 | None:intergenic | 45.0% | |
| CGGCTGCAAATGAAGAAAGA+CGG | + | chr5_1:11970429-11970448 | Msa0717950:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | - | chr5_1:11970485-11970504 | None:intergenic | 45.0% | |
| GTTGTTTGGGCTTGACTCAT+TGG | - | chr5_1:11969082-11969101 | None:intergenic | 45.0% | |
| ATCCTCAGTGTTTGTCACAG+CGG | - | chr5_1:11969157-11969176 | None:intergenic | 45.0% | |
| ! | ATCCCAAATGGTGGTGATGA+GGG | + | chr5_1:11969237-11969256 | Msa0717950:CDS | 45.0% |
| TACCCTCATCACCACCATTT+GGG | - | chr5_1:11969242-11969261 | None:intergenic | 45.0% | |
| TTACCCTCATCACCACCATT+TGG | - | chr5_1:11969243-11969262 | None:intergenic | 45.0% | |
| AGGGTAACGAAGAAGACGAT+GGG | + | chr5_1:11969256-11969275 | Msa0717950:CDS | 45.0% | |
| ! | AAGAAGACGATGGGGCTTTT+AGG | + | chr5_1:11969265-11969284 | Msa0717950:CDS | 45.0% |
| GACCATCAGAACCAACTTGT+TGG | - | chr5_1:11969332-11969351 | None:intergenic | 45.0% | |
| CTTGCATTCTGGACATGTTG+GGG | - | chr5_1:11969406-11969425 | None:intergenic | 45.0% | |
| CTCTTGCATTCTGGACATGT+TGG | - | chr5_1:11969408-11969427 | None:intergenic | 45.0% | |
| CAACATGTCCAGAATGCAAG+AGG | + | chr5_1:11969406-11969425 | Msa0717950:CDS | 45.0% | |
| TATATACCCTCAGCAGGAAC+GGG | - | chr5_1:11969531-11969550 | None:intergenic | 45.0% | |
| CTTGGCGACAAGATCAATGA+AGG | + | chr5_1:11970269-11970288 | Msa0717950:CDS | 45.0% | |
| TGGCGACAAGATCAATGAAG+GGG | + | chr5_1:11970271-11970290 | Msa0717950:CDS | 45.0% | |
| ! | AGATCGATTCAATCAACCGC+AGG | + | chr5_1:11970332-11970351 | Msa0717950:CDS | 45.0% |
| ! | GATCGATTCAATCAACCGCA+GGG | + | chr5_1:11970333-11970352 | Msa0717950:CDS | 45.0% |
| CGTCTTTCTTCATTTGCAGC+CGG | - | chr5_1:11970431-11970450 | None:intergenic | 45.0% | |
| CGGCTGCAAATGAAGAAAGA+CGG | + | chr5_1:11970429-11970448 | Msa0717950:CDS | 45.0% | |
| GTTTCATCATCCTCTTCTGG+AGG | - | chr5_1:11970485-11970504 | None:intergenic | 45.0% | |
| !! | AAAAAATCTAAAAATTATTT+AGG | + | chr5_1:11969817-11969836 | Msa0717950:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | + | chr5_1:11969818-11969837 | Msa0717950:intron | 5.0% |
| !! | AAAAAATCTAAAAATTATTT+AGG | + | chr5_1:11969817-11969836 | Msa0717950:intron | 5.0% |
| !! | AAAAATCTAAAAATTATTTA+GGG | + | chr5_1:11969818-11969837 | Msa0717950:intron | 5.0% |
| TTGGGCTTGACTCATTGGCA+GGG | - | chr5_1:11969077-11969096 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | - | chr5_1:11969078-11969097 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | - | chr5_1:11969095-11969114 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | - | chr5_1:11969133-11969152 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | - | chr5_1:11969156-11969175 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | + | chr5_1:11969179-11969198 | Msa0717950:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | - | chr5_1:11969184-11969203 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | - | chr5_1:11969209-11969228 | None:intergenic | 50.0% | |
| ! | GATCCCAAATGGTGGTGATG+AGG | + | chr5_1:11969236-11969255 | Msa0717950:CDS | 50.0% |
| GAGGGTAACGAAGAAGACGA+TGG | + | chr5_1:11969255-11969274 | Msa0717950:CDS | 50.0% | |
| GGGTAACGAAGAAGACGATG+GGG | + | chr5_1:11969257-11969276 | Msa0717950:CDS | 50.0% | |
| !!! | CGATGGGGCTTTTAGGACAA+TGG | + | chr5_1:11969272-11969291 | Msa0717950:CDS | 50.0% |
| AGATGAACCGTCGGCAGTTA+GGG | - | chr5_1:11969304-11969323 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | - | chr5_1:11969380-11969399 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | + | chr5_1:11969378-11969397 | Msa0717950:CDS | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | - | chr5_1:11969392-11969411 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | - | chr5_1:11969417-11969436 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | + | chr5_1:11969436-11969455 | Msa0717950:CDS | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | - | chr5_1:11969503-11969522 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | - | chr5_1:11969504-11969523 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | - | chr5_1:11969507-11969526 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | - | chr5_1:11969510-11969529 | None:intergenic | 50.0% |
| ! | TCATCATCCTCTTCTGGAGG+TGG | - | chr5_1:11970482-11970501 | None:intergenic | 50.0% |
| TTGGGCTTGACTCATTGGCA+GGG | - | chr5_1:11969077-11969096 | None:intergenic | 50.0% | |
| TTTGGGCTTGACTCATTGGC+AGG | - | chr5_1:11969078-11969097 | None:intergenic | 50.0% | |
| !! | TGGCTGGTGTGGTGTTGTTT+GGG | - | chr5_1:11969095-11969114 | None:intergenic | 50.0% |
| TGGCTGATCATGTTCAGCCA+AGG | - | chr5_1:11969133-11969152 | None:intergenic | 50.0% | |
| TCCTCAGTGTTTGTCACAGC+GGG | - | chr5_1:11969156-11969175 | None:intergenic | 50.0% | |
| ! | AACCTCTCTGAAAACACCGG+AGG | + | chr5_1:11969179-11969198 | Msa0717950:CDS | 50.0% |
| ! | TTCCTCCGGTGTTTTCAGAG+AGG | - | chr5_1:11969184-11969203 | None:intergenic | 50.0% |
| CATCATCAGTTAGTTCGGCC+AGG | - | chr5_1:11969209-11969228 | None:intergenic | 50.0% | |
| ! | GATCCCAAATGGTGGTGATG+AGG | + | chr5_1:11969236-11969255 | Msa0717950:CDS | 50.0% |
| GAGGGTAACGAAGAAGACGA+TGG | + | chr5_1:11969255-11969274 | Msa0717950:CDS | 50.0% | |
| GGGTAACGAAGAAGACGATG+GGG | + | chr5_1:11969257-11969276 | Msa0717950:CDS | 50.0% | |
| !!! | CGATGGGGCTTTTAGGACAA+TGG | + | chr5_1:11969272-11969291 | Msa0717950:CDS | 50.0% |
| AGATGAACCGTCGGCAGTTA+GGG | - | chr5_1:11969304-11969323 | None:intergenic | 50.0% | |
| CTGATGGAGGGTCTTTCACT+TGG | - | chr5_1:11969380-11969399 | None:intergenic | 50.0% | |
| CAAGTGAAAGACCCTCCATC+AGG | + | chr5_1:11969378-11969397 | Msa0717950:CDS | 50.0% | |
| ATGTTGGGGATCCTGATGGA+GGG | - | chr5_1:11969392-11969411 | None:intergenic | 50.0% | |
| GCAAACTCCCTCTTGCATTC+TGG | - | chr5_1:11969417-11969436 | None:intergenic | 50.0% | |
| CCACATGGAAAGCTGCGTTT+GGG | + | chr5_1:11969436-11969455 | Msa0717950:CDS | 50.0% | |
| !! | CGGTGCTAAAAGTTGGTGGA+GGG | - | chr5_1:11969503-11969522 | None:intergenic | 50.0% |
| !! | ACGGTGCTAAAAGTTGGTGG+AGG | - | chr5_1:11969504-11969523 | None:intergenic | 50.0% |
| ! | GCAACGGTGCTAAAAGTTGG+TGG | - | chr5_1:11969507-11969526 | None:intergenic | 50.0% |
| ! | GGTGCAACGGTGCTAAAAGT+TGG | - | chr5_1:11969510-11969529 | None:intergenic | 50.0% |
| ! | TCATCATCCTCTTCTGGAGG+TGG | - | chr5_1:11970482-11970501 | None:intergenic | 50.0% |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | - | chr5_1:11969096-11969115 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | - | chr5_1:11969121-11969140 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | - | chr5_1:11969122-11969141 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | - | chr5_1:11969123-11969142 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | - | chr5_1:11969153-11969172 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | + | chr5_1:11969152-11969171 | Msa0717950:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | + | chr5_1:11969188-11969207 | Msa0717950:CDS | 55.0% | |
| GTTATCGCCCTAACTGCCGA+CGG | + | chr5_1:11969294-11969313 | Msa0717950:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | - | chr5_1:11969305-11969324 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | - | chr5_1:11969393-11969412 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | - | chr5_1:11969396-11969415 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | + | chr5_1:11969421-11969440 | Msa0717950:CDS | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | + | chr5_1:11969435-11969454 | Msa0717950:CDS | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | - | chr5_1:11969439-11969458 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | + | chr5_1:11969469-11969488 | Msa0717950:CDS | 55.0% | |
| ATGACCACTACCACCAGCAG+AGG | - | chr5_1:11970360-11970379 | None:intergenic | 55.0% | |
| TCTTCATTTGCAGCCGGTGC+AGG | - | chr5_1:11970425-11970444 | None:intergenic | 55.0% | |
| !! | GTGGCTGGTGTGGTGTTGTT+TGG | - | chr5_1:11969096-11969115 | None:intergenic | 55.0% |
| TTCAGCCAAGGTGCGTTGAG+GGG | - | chr5_1:11969121-11969140 | None:intergenic | 55.0% | |
| GTTCAGCCAAGGTGCGTTGA+GGG | - | chr5_1:11969122-11969141 | None:intergenic | 55.0% | |
| TGTTCAGCCAAGGTGCGTTG+AGG | - | chr5_1:11969123-11969142 | None:intergenic | 55.0% | |
| TCAGTGTTTGTCACAGCGGG+TGG | - | chr5_1:11969153-11969172 | None:intergenic | 55.0% | |
| ACCCGCTGTGACAAACACTG+AGG | + | chr5_1:11969152-11969171 | Msa0717950:CDS | 55.0% | |
| GAAAACACCGGAGGAAGTCC+TGG | + | chr5_1:11969188-11969207 | Msa0717950:CDS | 55.0% | |
| GTTATCGCCCTAACTGCCGA+CGG | + | chr5_1:11969294-11969313 | Msa0717950:CDS | 55.0% | |
| CAGATGAACCGTCGGCAGTT+AGG | - | chr5_1:11969305-11969324 | None:intergenic | 55.0% | |
| CATGTTGGGGATCCTGATGG+AGG | - | chr5_1:11969393-11969412 | None:intergenic | 55.0% | |
| GGACATGTTGGGGATCCTGA+TGG | - | chr5_1:11969396-11969415 | None:intergenic | 55.0% | |
| GCAAGAGGGAGTTTGCCACA+TGG | + | chr5_1:11969421-11969440 | Msa0717950:CDS | 55.0% | |
| GCCACATGGAAAGCTGCGTT+TGG | + | chr5_1:11969435-11969454 | Msa0717950:CDS | 55.0% | |
| CCCAAACGCAGCTTTCCATG+TGG | - | chr5_1:11969439-11969458 | None:intergenic | 55.0% | |
| AGCATCCAGAGCGTGCTCAT+CGG | + | chr5_1:11969469-11969488 | Msa0717950:CDS | 55.0% | |
| ATGACCACTACCACCAGCAG+AGG | - | chr5_1:11970360-11970379 | None:intergenic | 55.0% | |
| TCTTCATTTGCAGCCGGTGC+AGG | - | chr5_1:11970425-11970444 | None:intergenic | 55.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | - | chr5_1:11969106-11969125 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | - | chr5_1:11969115-11969134 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | + | chr5_1:11969113-11969132 | Msa0717950:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | - | chr5_1:11969198-11969217 | None:intergenic | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | + | chr5_1:11969470-11969489 | Msa0717950:CDS | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | + | chr5_1:11969471-11969490 | Msa0717950:CDS | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | + | chr5_1:11969472-11969491 | Msa0717950:CDS | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | - | chr5_1:11969523-11969542 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | + | chr5_1:11969522-11969541 | Msa0717950:CDS | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | + | chr5_1:11970472-11970491 | Msa0717950:CDS | 60.0% | |
| TTGAGGGGAAGTGGCTGGTG+TGG | - | chr5_1:11969106-11969125 | None:intergenic | 60.0% | |
| CAAGGTGCGTTGAGGGGAAG+TGG | - | chr5_1:11969115-11969134 | None:intergenic | 60.0% | |
| CACTTCCCCTCAACGCACCT+TGG | + | chr5_1:11969113-11969132 | Msa0717950:CDS | 60.0% | |
| AGTTCGGCCAGGACTTCCTC+CGG | - | chr5_1:11969198-11969217 | None:intergenic | 60.0% | |
| GCATCCAGAGCGTGCTCATC+GGG | + | chr5_1:11969470-11969489 | Msa0717950:CDS | 60.0% | |
| CATCCAGAGCGTGCTCATCG+GGG | + | chr5_1:11969471-11969490 | Msa0717950:CDS | 60.0% | |
| ATCCAGAGCGTGCTCATCGG+GGG | + | chr5_1:11969472-11969491 | Msa0717950:CDS | 60.0% | |
| CTCAGCAGGAACGGGTGCAA+CGG | - | chr5_1:11969523-11969542 | None:intergenic | 60.0% | |
| GTTGCACCCGTTCCTGCTGA+GGG | + | chr5_1:11969522-11969541 | Msa0717950:CDS | 60.0% | |
| CGAGTTGCCACCTCCAGAAG+AGG | + | chr5_1:11970472-11970491 | Msa0717950:CDS | 60.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | - | chr5_1:11969111-11969130 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | - | chr5_1:11969477-11969496 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | + | chr5_1:11969521-11969540 | Msa0717950:CDS | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+TGG | + | chr5_1:11970344-11970363 | Msa0717950:CDS | 65.0% | |
| ACCACCAGCAGAGGACCCTG+CGG | - | chr5_1:11970351-11970370 | None:intergenic | 65.0% | |
| GGGTCCTCTGCTGGTGGTAG+TGG | + | chr5_1:11970353-11970372 | Msa0717950:CDS | 65.0% | |
| GTGCAGGTGCAGGTGGTGCT+TGG | - | chr5_1:11970397-11970416 | None:intergenic | 65.0% | |
| ACCTGCACCAGCACCTGCAC+CGG | + | chr5_1:11970409-11970428 | Msa0717950:CDS | 65.0% | |
| TTTGCAGCCGGTGCAGGTGC+TGG | - | chr5_1:11970419-11970438 | None:intergenic | 65.0% | |
| GTGCGTTGAGGGGAAGTGGC+TGG | - | chr5_1:11969111-11969130 | None:intergenic | 65.0% | |
| AACCCCCGATGAGCACGCTC+TGG | - | chr5_1:11969477-11969496 | None:intergenic | 65.0% | |
| CGTTGCACCCGTTCCTGCTG+AGG | + | chr5_1:11969521-11969540 | Msa0717950:CDS | 65.0% | |
| TCAACCGCAGGGTCCTCTGC+TGG | + | chr5_1:11970344-11970363 | Msa0717950:CDS | 65.0% | |
| ACCACCAGCAGAGGACCCTG+CGG | - | chr5_1:11970351-11970370 | None:intergenic | 65.0% | |
| GGGTCCTCTGCTGGTGGTAG+TGG | + | chr5_1:11970353-11970372 | Msa0717950:CDS | 65.0% | |
| GTGCAGGTGCAGGTGGTGCT+TGG | - | chr5_1:11970397-11970416 | None:intergenic | 65.0% | |
| ACCTGCACCAGCACCTGCAC+CGG | + | chr5_1:11970409-11970428 | Msa0717950:CDS | 65.0% | |
| TTTGCAGCCGGTGCAGGTGC+TGG | - | chr5_1:11970419-11970438 | None:intergenic | 65.0% | |
| ACCGCAGGGTCCTCTGCTGG+TGG | + | chr5_1:11970347-11970366 | Msa0717950:CDS | 70.0% | |
| !! | GGTGCTGGTGCAGGTGCAGG+TGG | - | chr5_1:11970404-11970423 | None:intergenic | 70.0% |
| !! | GCAGGTGCTGGTGCAGGTGC+AGG | - | chr5_1:11970407-11970426 | None:intergenic | 70.0% |
| ACCGCAGGGTCCTCTGCTGG+TGG | + | chr5_1:11970347-11970366 | Msa0717950:CDS | 70.0% | |
| !! | GGTGCTGGTGCAGGTGCAGG+TGG | - | chr5_1:11970404-11970423 | None:intergenic | 70.0% |
| !! | GCAGGTGCTGGTGCAGGTGC+AGG | - | chr5_1:11970407-11970426 | None:intergenic | 70.0% |
| !! | GCCGGTGCAGGTGCTGGTGC+AGG | - | chr5_1:11970413-11970432 | None:intergenic | 75.0% |
| !! | GCCGGTGCAGGTGCTGGTGC+AGG | - | chr5_1:11970413-11970432 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 11969063 | 11970517 | 11969063 | ID=Msa0717950;Name=Msa0717950 |
| chr5_1 | mRNA | 11969063 | 11970517 | 11969063 | ID=Msa0717950-mRNA-1;Parent=Msa0717950;Name=Msa0717950-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0|0|1|1|1|2|0|245 |
| chr5_1 | exon | 11969063 | 11969543 | 11969063 | ID=Msa0717950-mRNA-1:exon:4857;Parent=Msa0717950-mRNA-1 |
| chr5_1 | exon | 11970261 | 11970517 | 11970261 | ID=Msa0717950-mRNA-1:exon:4858;Parent=Msa0717950-mRNA-1 |
| chr5_1 | CDS | 11969063 | 11969543 | 11969063 | ID=Msa0717950-mRNA-1:cds;Parent=Msa0717950-mRNA-1 |
| chr5_1 | CDS | 11970261 | 11970517 | 11970261 | ID=Msa0717950-mRNA-1:cds;Parent=Msa0717950-mRNA-1 |
| Gene Sequence |
| Protein sequence |
