AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0718090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718090 MtrunA17_Chr5g0407121 99.103 446 4 0 1 446 1 446 0.0 924
Msa0718090 MtrunA17_Chr8g0370321 82.287 446 75 2 1 446 1 442 0.0 743
Msa0718090 MtrunA17_Chr1g0179611 53.066 473 162 6 2 415 8 479 1.29e-174 500
Msa0718090 MtrunA17_Chr2g0320631 48.450 516 186 5 6 442 8 522 4.46e-169 486
Msa0718090 MtrunA17_Chr4g0027671 51.496 468 162 5 12 415 13 479 2.22e-168 484
Msa0718090 MtrunA17_Chr3g0139371 31.266 387 196 10 37 414 73 398 1.40e-43 157
Msa0718090 MtrunA17_Chr3g0116701 27.970 404 219 10 21 414 78 419 3.05e-38 143
Msa0718090 MtrunA17_Chr4g0058241 28.429 401 215 11 21 411 82 420 3.78e-37 140
Msa0718090 MtrunA17_Chr3g0123491 28.117 409 216 12 21 415 77 421 7.67e-35 134
Msa0718090 MtrunA17_Chr5g0437131 24.495 396 205 11 29 414 394 705 1.17e-23 103
Msa0718090 MtrunA17_Chr8g0369241 40.000 145 81 3 37 180 138 277 3.45e-22 99.8
Msa0718090 MtrunA17_Chr8g0369241 39.450 109 58 3 254 361 285 386 1.37e-13 73.2
Msa0718090 MtrunA17_Chr6g0480541 31.953 169 100 5 252 414 1041 1200 5.38e-20 93.2
Msa0718090 MtrunA17_Chr6g0480541 32.544 169 101 5 15 179 879 1038 2.39e-14 75.9
Msa0718090 MtrunA17_Chr1g0210061 34.615 182 85 8 254 414 757 925 9.77e-15 76.6
Msa0718090 MtrunA17_Chr1g0210061 30.814 172 100 5 11 177 592 749 3.70e-14 75.1
Msa0718090 MtrunA17_Chr3g0140071 30.822 146 85 5 34 177 5 136 3.61e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0718090 AT4G35500.1 73.094 446 108 4 1 443 1 437 0.0 656
Msa0718090 AT2G17530.1 75.730 445 97 4 1 443 1 436 0.0 648
Msa0718090 AT2G17530.3 75.730 445 97 4 1 443 1 436 0.0 648
Msa0718090 AT4G35500.2 70.917 447 117 5 1 443 1 438 0.0 631
Msa0718090 AT2G17530.2 79.592 343 67 3 1 341 1 342 0.0 518
Msa0718090 AT3G53030.1 49.901 505 184 8 5 442 7 509 1.62e-170 489
Msa0718090 AT3G44850.1 51.613 465 163 5 12 415 19 482 1.65e-163 472
Msa0718090 AT5G22840.1 50.753 465 172 5 4 415 11 471 2.22e-163 471
Msa0718090 AT4G32660.3 30.370 405 208 12 21 414 47 388 2.56e-42 154
Msa0718090 AT4G32660.1 30.370 405 208 12 21 414 55 396 2.69e-42 154
Msa0718090 AT4G24740.7 29.310 406 211 12 21 414 44 385 7.41e-39 145
Msa0718090 AT4G24740.1 29.310 406 211 12 21 414 82 423 1.38e-38 145
Msa0718090 AT4G32660.2 31.157 337 170 10 21 356 55 330 3.09e-38 142
Msa0718090 AT4G24740.6 29.504 383 195 11 44 414 1 320 2.20e-37 139
Msa0718090 AT4G24740.9 29.504 383 195 11 44 414 1 320 2.20e-37 139
Msa0718090 AT4G24740.2 29.504 383 195 11 44 414 1 320 2.20e-37 139
Msa0718090 AT3G53570.1 29.095 409 213 14 21 415 99 444 1.20e-35 137
Msa0718090 AT3G53570.4 29.095 409 213 14 21 415 99 444 1.20e-35 137
Msa0718090 AT3G53570.2 29.095 409 213 14 21 415 99 444 1.20e-35 137
Msa0718090 AT3G53570.3 29.095 409 213 14 21 415 85 430 1.35e-35 137
Msa0718090 AT3G53570.5 29.095 409 213 14 21 415 85 430 1.35e-35 137
Msa0718090 AT4G24740.3 30.530 321 164 9 21 341 82 343 1.38e-34 132
Msa0718090 AT4G24740.5 30.872 298 148 8 44 341 1 240 2.70e-33 126
Msa0718090 AT4G32660.4 30.814 344 165 12 82 414 3 284 1.07e-32 125
Msa0718090 AT4G24740.4 30.420 286 147 8 21 306 82 315 1.39e-28 115
Msa0718090 AT5G35980.3 38.667 150 86 3 37 185 86 230 2.74e-22 100
Msa0718090 AT5G35980.3 42.424 99 50 2 254 352 232 323 4.82e-15 78.2
Msa0718090 AT5G35980.2 38.667 150 86 3 37 185 121 265 2.83e-22 100
Msa0718090 AT5G35980.2 42.424 99 50 2 254 352 267 358 5.52e-15 77.8
Msa0718090 AT5G35980.1 38.667 150 86 3 37 185 121 265 2.87e-22 100
Msa0718090 AT5G35980.1 42.424 99 50 2 254 352 267 358 5.12e-15 78.2
Msa0718090 AT4G24740.10 29.811 265 117 8 162 414 10 217 3.43e-21 92.0
Msa0718090 AT4G24740.8 29.811 265 117 8 162 414 10 217 3.43e-21 92.0
Msa0718090 AT1G73460.2 32.941 170 99 5 252 415 1001 1161 4.93e-21 97.1
Msa0718090 AT1G73460.2 32.258 155 96 3 29 179 849 998 1.79e-13 73.6
Msa0718090 AT1G73460.1 32.941 170 99 5 252 415 1001 1161 4.93e-21 97.1
Msa0718090 AT1G73460.1 32.258 155 96 3 29 179 849 998 1.79e-13 73.6
Msa0718090 AT1G73450.1 32.941 170 99 5 252 415 984 1144 5.32e-21 96.7
Msa0718090 AT1G73450.1 32.258 155 96 3 29 179 832 981 1.89e-13 73.2
Msa0718090 AT2G40120.1 24.311 399 212 12 29 419 252 568 1.33e-20 94.7
Msa0718090 AT3G17750.1 31.953 169 100 5 252 414 970 1129 8.97e-18 86.7
Msa0718090 AT3G17750.1 31.953 169 102 5 15 179 808 967 1.87e-13 73.2
Msa0718090 AT3G53640.1 32.961 179 93 6 254 414 470 639 1.13e-16 82.8
Msa0718090 AT3G53640.1 31.395 172 99 5 11 177 305 462 2.59e-12 69.3
Msa0718090 AT1G13350.1 31.395 172 99 5 11 177 424 581 4.22e-14 75.1
Msa0718090 AT1G13350.1 30.168 179 98 6 254 414 589 758 1.14e-13 73.9
Msa0718090 AT1G13350.2 31.395 172 99 5 11 177 451 608 4.62e-14 75.1
Msa0718090 AT1G13350.2 30.168 179 98 6 254 414 616 785 1.33e-13 73.6
Msa0718090 AT3G12690.1 26.224 286 178 9 42 315 189 453 4.93e-14 74.7
Msa0718090 AT3G12690.3 26.224 286 178 9 42 315 189 453 4.93e-14 74.7
Msa0718090 AT3G12690.2 26.224 286 178 9 42 315 189 453 4.93e-14 74.7
Msa0718090 AT1G13350.3 31.395 172 99 5 11 177 497 654 5.92e-14 74.7
Msa0718090 AT1G13350.3 30.168 179 98 6 254 414 662 831 1.14e-13 73.9
Msa0718090 AT3G25840.2 31.638 177 97 6 254 414 502 670 8.17e-14 73.9
Msa0718090 AT3G25840.2 30.233 172 101 5 11 177 337 494 3.07e-12 69.3
Msa0718090 AT3G25840.1 31.638 177 97 6 254 414 764 932 2.12e-13 73.2
Msa0718090 AT3G25840.1 30.233 172 101 5 11 177 599 756 3.03e-12 69.3
Msa0718090 AT3G20830.1 23.810 294 188 10 40 320 23 293 7.31e-12 67.4
Msa0718090 AT1G04440.1 28.571 147 93 4 31 177 2 136 7.74e-11 64.3

Find 133 sgRNAs with CRISPR-Local

Find 263 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGCAAGATTGTCGATTT+TGG 0.222958 5_1:-12259922 Msa0718090:CDS
TACAAAGAATGTCACTAAAT+TGG 0.264728 5_1:+12258359 None:intergenic
ACCGGCATGGTGATCTAAAA+AGG 0.287476 5_1:-12258871 Msa0718090:CDS
TTTAGTGACATTCTTTGTAT+TGG 0.310376 5_1:-12258355 Msa0718090:three_prime_UTR
ATAACCTTGTCCACCACCTT+TGG 0.312925 5_1:+12259738 None:intergenic
TGCATGGTCCTTGAGTTTCT+TGG 0.316560 5_1:-12260324 Msa0718090:CDS
TAACCTTGTCCACCACCTTT+GGG 0.320820 5_1:+12259739 None:intergenic
TTTGAGAATCACCAATGAAA+TGG 0.326560 5_1:+12261965 None:intergenic
CCTCAGTCCGTTCTAAAGTT+GGG 0.329112 5_1:+12260097 None:intergenic
ATGTCTTGTTCTTCTTCATC+AGG 0.333473 5_1:-12261857 Msa0718090:CDS
AGTTCAGCCAGGGGTGTTGC+AGG 0.337595 5_1:+12258705 None:intergenic
ACTTTCCTACCTTGATTTGA+AGG 0.337930 5_1:+12258612 None:intergenic
GGGGAGAGTCCGGATCTAAA+AGG 0.349666 5_1:+12260117 None:intergenic
TCCGGATCTAAAAGGGTCTT+TGG 0.351019 5_1:+12260125 None:intergenic
ATGCAATGGTGCTGCCCATT+TGG 0.353666 5_1:+12260342 None:intergenic
TGGGAGTGTACTCACCTTCC+GGG 0.362905 5_1:+12258993 None:intergenic
AAGTGCGGCCGAGTTTGTTC+AGG 0.372250 5_1:-12260466 Msa0718090:CDS
GCGTGCAGTTGCTAAAATAT+CGG 0.390478 5_1:-12260016 Msa0718090:CDS
GATTCATTTCTCATTTCATT+TGG 0.391464 5_1:+12258668 None:intergenic
GCTTAAAGTTATCAATCAAT+TGG 0.393123 5_1:+12260373 None:intergenic
ATCTCTCTAACTTTATTCAA+TGG 0.394338 5_1:+12260255 None:intergenic
TGCTCAGAGGAAACTTGGTT+GGG 0.402208 5_1:-12261741 Msa0718090:CDS
GATTACTTGCATAGTGAACT+TGG 0.411710 5_1:-12260207 Msa0718090:CDS
CCCTCAGTCCGTTCTAAAGT+TGG 0.414075 5_1:+12260096 None:intergenic
GGGGTCAATTCTCCACCGTT+TGG 0.419364 5_1:-12261721 Msa0718090:CDS
TTTACCACAATCAAAGAATC+TGG 0.423144 5_1:-12258560 Msa0718090:three_prime_UTR
TTTAAGCACACAGGTCCAAA+TGG 0.425606 5_1:-12260357 Msa0718090:CDS
TGATTCATTGCAGTTCAGCC+AGG 0.429978 5_1:+12258694 None:intergenic
TTCTAAAGTTGGGGAGAGTC+CGG 0.433511 5_1:+12260107 None:intergenic
GGATCATCTTGCCTTGATGA+TGG 0.437810 5_1:-12259034 Msa0718090:CDS
TTACAAGTCTTATTGAGAAA+AGG 0.437935 5_1:-12260056 Msa0718090:CDS
CCAGACTTCAGTATAACTTC+AGG 0.439622 5_1:+12259838 None:intergenic
TGTGGATTGCAGATTGCAAT+TGG 0.442014 5_1:-12258920 Msa0718090:intron
TTGAGAATCACCAATGAAAT+GGG 0.454404 5_1:+12261966 None:intergenic
AAATGAATCTACTGTGGAAA+AGG 0.456827 5_1:-12258654 Msa0718090:CDS
TATATTGCTCAGAGGAAACT+TGG 0.462401 5_1:-12261746 Msa0718090:CDS
ACAACAAACTTTGAATTCGA+TGG 0.467683 5_1:+12260396 None:intergenic
TTGTTCTTCTTCATCAGGAT+CGG 0.468336 5_1:-12261852 Msa0718090:CDS
GGCAATACCTGCAACACCCC+TGG 0.477580 5_1:-12258712 Msa0718090:CDS
CGGTCCAGATTCTTTGATTG+TGG 0.478246 5_1:+12258556 None:intergenic
TCAATGGAAGACCTTTGTAA+TGG 0.483257 5_1:+12260271 None:intergenic
CGTGCAGTTGCTAAAATATC+GGG 0.483843 5_1:-12260015 Msa0718090:CDS
GGAAGAACAGCTTCAATTGA+AGG 0.486531 5_1:-12259994 Msa0718090:CDS
CCGACTTTGTTTCGACCTAA+CGG 0.488082 5_1:+12258536 None:intergenic
AACTCCTCGGAAAGATGCCC+CGG 0.493756 5_1:-12259011 Msa0718090:CDS
TTGCTCAGAGGAAACTTGGT+TGG 0.496479 5_1:-12261742 Msa0718090:CDS
TTCTTTCAACCATTGCTGAT+GGG 0.501024 5_1:-12260422 Msa0718090:CDS
CAGACTTCAGTATAACTTCA+GGG 0.503743 5_1:+12259839 None:intergenic
CCTGAAGTTATACTGAAGTC+TGG 0.506057 5_1:-12259838 Msa0718090:CDS
GATTCATTGCAGTTCAGCCA+GGG 0.507004 5_1:+12258695 None:intergenic
ATGCCGGTCAAAGTAATCCT+TGG 0.507357 5_1:+12258886 None:intergenic
GTTCTTTCAACCATTGCTGA+TGG 0.515507 5_1:-12260423 Msa0718090:CDS
TGTTTGATTGAGGCAAATGC+GGG 0.520079 5_1:-12258481 Msa0718090:three_prime_UTR
TCCGAGGAGTTCCATCATCA+AGG 0.521134 5_1:+12259023 None:intergenic
ACAGCTTCAATTGAAGGAAG+AGG 0.522518 5_1:-12259988 Msa0718090:CDS
ATTGCTTTCGAGCTTGCCAC+TGG 0.524146 5_1:-12259778 Msa0718090:CDS
CTCAGTCCGTTCTAAAGTTG+GGG 0.526561 5_1:+12260098 None:intergenic
TCTTTCAACCATTGCTGATG+GGG 0.528594 5_1:-12260421 Msa0718090:CDS
AATCCAAGGATTACTTTGAC+CGG 0.528653 5_1:-12258889 Msa0718090:CDS
TATGAGCAACCTTCAAATCA+AGG 0.531115 5_1:-12258621 Msa0718090:CDS
TGGTTTGAATTGTTTGATTG+AGG 0.532138 5_1:-12258491 Msa0718090:three_prime_UTR
CAACAAACTTTGAATTCGAT+GGG 0.538001 5_1:+12260397 None:intergenic
ATCAAAGAATCTGGACCGTT+AGG 0.538356 5_1:-12258551 Msa0718090:three_prime_UTR
GGGAGAGTCCGGATCTAAAA+GGG 0.543496 5_1:+12260118 None:intergenic
TTATTTACACCCAAAGGTGG+TGG 0.545111 5_1:-12259748 Msa0718090:CDS
GAGATCCGATCTTAATCTGA+TGG 0.545249 5_1:-12258511 Msa0718090:three_prime_UTR
TGCAGGTATTGCCGTGCAGT+TGG 0.547161 5_1:+12258722 None:intergenic
GGATTGCAGATTGCAATTGG+TGG 0.549667 5_1:-12258917 Msa0718090:intron
ATGAGGGATTTGAGTCCTAT+CGG 0.552054 5_1:-12261820 Msa0718090:CDS
TTAAGCACACAGGTCCAAAT+GGG 0.558245 5_1:-12260356 Msa0718090:CDS
TCAATCAGCAATTTGTCAAG+TGG 0.561218 5_1:+12258827 None:intergenic
CTGATCAATTCGCGGGTGGG+AGG 0.561858 5_1:-12261769 Msa0718090:CDS
GATATGTTATTTACACCCAA+AGG 0.565138 5_1:-12259754 Msa0718090:CDS
TCAAACCATCAGATTAAGAT+CGG 0.565789 5_1:+12258506 None:intergenic
ACACCCAAAGGTGGTGGACA+AGG 0.567008 5_1:-12259742 Msa0718090:CDS
TAGAGTCGCTGATCAATTCG+CGG 0.570049 5_1:-12261777 Msa0718090:CDS
CCTTCCGGGGCATCTTTCCG+AGG 0.576947 5_1:+12259007 None:intergenic
CGATGGGTCCCCATCAGCAA+TGG 0.578011 5_1:+12260413 None:intergenic
TTCTTCTTCATCAGGATCGG+AGG 0.578889 5_1:-12261849 Msa0718090:CDS
ATTCCTTCTCTGTAGACATG+TGG 0.579312 5_1:-12259813 Msa0718090:CDS
ACAAGGTTATAGCGAGGATG+AGG 0.579359 5_1:-12259725 Msa0718090:intron
CAAATGCGGGTCTGACTGCA+AGG 0.579453 5_1:-12258468 Msa0718090:three_prime_UTR
AAGGATTACTTTGACCGGCA+TGG 0.580864 5_1:-12258884 Msa0718090:CDS
ACTGTGGAAAAGGTTAATGT+TGG 0.582824 5_1:-12258644 Msa0718090:CDS
ATCAAATACAGCCATTACAA+AGG 0.586492 5_1:-12260282 Msa0718090:CDS
ATTCATTGCAGTTCAGCCAG+GGG 0.586651 5_1:+12258696 None:intergenic
AGGATCGGAGGAAGATGATG+AGG 0.592202 5_1:-12261837 Msa0718090:CDS
GATCTAAAAGGGTCTTTGGA+AGG 0.592260 5_1:+12260129 None:intergenic
GTCGCTGATCAATTCGCGGG+TGG 0.594980 5_1:-12261773 Msa0718090:CDS
AAGGGCAGCCTGAACAAACT+CGG 0.595404 5_1:+12260458 None:intergenic
TCGCTGATCAATTCGCGGGT+GGG 0.599945 5_1:-12261772 Msa0718090:CDS
ATTGATAACTTTAAGCACAC+AGG 0.601668 5_1:-12260366 Msa0718090:CDS
TGTAAATAACATATCTCCAG+TGG 0.603326 5_1:+12259762 None:intergenic
CGGACTGAGGGAAACACAAA+CGG 0.603582 5_1:-12260084 Msa0718090:CDS
TTTCAGGCTTTAAGTCTGTG+TGG 0.603818 5_1:+12260178 None:intergenic
AAATCAAGGTAGGAAAGTGA+AGG 0.604919 5_1:-12258607 Msa0718090:exon
GCTCAGAGGAAACTTGGTTG+GGG 0.605080 5_1:-12261740 Msa0718090:CDS
AACAAAACACAAGACCCAGA+TGG 0.607452 5_1:+12261910 None:intergenic
AATTGGTGGAGCTCAATCCA+AGG 0.608972 5_1:-12258903 Msa0718090:CDS
ATGGTATCCACCTTTCCGAT+AGG 0.609356 5_1:+12261805 None:intergenic
AGACCACATGTCTACAGAGA+AGG 0.609410 5_1:+12259810 None:intergenic
AGTCTAGTAGAAATATCGAC+GGG 0.609550 5_1:-12259954 Msa0718090:CDS
AAATGGGCAGCACCATTGCA+TGG 0.610699 5_1:-12260340 Msa0718090:CDS
AGAGTCGCTGATCAATTCGC+GGG 0.611441 5_1:-12261776 Msa0718090:CDS
TTGTTTGATTGAGGCAAATG+CGG 0.618583 5_1:-12258482 Msa0718090:three_prime_UTR
TTTGAGTCCTATCGGAAAGG+TGG 0.621569 5_1:-12261812 Msa0718090:CDS
AAGTCTAGTAGAAATATCGA+CGG 0.621748 5_1:-12259955 Msa0718090:CDS
AAAGAACGTTGATCTCGTGA+AGG 0.622147 5_1:+12260439 None:intergenic
GGGAGTGTACTCACCTTCCG+GGG 0.625406 5_1:+12258994 None:intergenic
AAGAACGTTGATCTCGTGAA+GGG 0.630667 5_1:+12260440 None:intergenic
AGTATCATAAGCAAGCCAAA+CGG 0.632450 5_1:+12261706 None:intergenic
GAAACTCAAGGACCATGCAA+TGG 0.636117 5_1:+12260328 None:intergenic
CCCAACTTTAGAACGGACTG+AGG 0.637641 5_1:-12260097 Msa0718090:CDS
AGCAACCTTCAAATCAAGGT+AGG 0.638879 5_1:-12258617 Msa0718090:CDS
GACTCTCCCCAACTTTAGAA+CGG 0.639593 5_1:-12260104 Msa0718090:CDS
GTACAATACGTGTTCTGACA+AGG 0.640270 5_1:-12258585 Msa0718090:three_prime_UTR
ATGTTATTTACACCCAAAGG+TGG 0.642360 5_1:-12259751 Msa0718090:CDS
CCGTTAGGTCGAAACAAAGT+CGG 0.644967 5_1:-12258536 Msa0718090:three_prime_UTR
ATCATAAGCAAGCCAAACGG+TGG 0.646324 5_1:+12261709 None:intergenic
CCTCGGAAAGATGCCCCGGA+AGG 0.647925 5_1:-12259007 Msa0718090:intron
GGATTTGAGTCCTATCGGAA+AGG 0.650525 5_1:-12261815 Msa0718090:CDS
AGCTATCACCAAGAAACTCA+AGG 0.651636 5_1:+12260316 None:intergenic
GGATCGGAGGAAGATGATGA+GGG 0.654053 5_1:-12261836 Msa0718090:CDS
GCCTTGATGATGGAACTCCT+CGG 0.654637 5_1:-12259024 Msa0718090:CDS
GATCAGCGACTCTAACAGCA+TGG 0.659062 5_1:+12261786 None:intergenic
ATAAGAAGAACATACAGAGG+TGG 0.667158 5_1:+12261682 None:intergenic
AATGAGAAATGAATCTACTG+TGG 0.670154 5_1:-12258660 Msa0718090:CDS
CCAACTTTAGAACGGACTGA+GGG 0.670163 5_1:-12260096 Msa0718090:CDS
AGACTTCAGTATAACTTCAG+GGG 0.688658 5_1:+12259840 None:intergenic
ACTGAGGGAAACACAAACGG+TGG 0.700333 5_1:-12260081 Msa0718090:CDS
TGGTGGACAAGGTTATAGCG+AGG 0.709203 5_1:-12259731 Msa0718090:CDS
TCTCAAAATCCAGAAAAGTG+CGG 0.715435 5_1:-12260481 Msa0718090:CDS
GTGGGAGGTATATTGCTCAG+AGG 0.720598 5_1:-12261754 Msa0718090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTAATTAATTTTGTGT+AGG + chr5_1:12258298-12258317 None:intergenic 10.0%
!! ATTTCAAAAATATTCTATAT+GGG - chr5_1:12259657-12259676 Msa0718090:intron 10.0%
!!! ATAATTTTAAAAATTATCAC+TGG + chr5_1:12259726-12259745 None:intergenic 10.0%
!! AATCATGAAAAACAAAAAAT+AGG + chr5_1:12258648-12258667 None:intergenic 15.0%
!! GATTTCAAAAATATTCTATA+TGG - chr5_1:12259656-12259675 Msa0718090:intron 15.0%
!! AAATTAGAAAAAGATATTAG+TGG + chr5_1:12259758-12259777 None:intergenic 15.0%
!!! ATTTGTAAATACATTTTGAT+TGG - chr5_1:12260051-12260070 Msa0718090:CDS 15.0%
!!! AAACTTATATTATTTGTTAC+TGG - chr5_1:12261198-12261217 Msa0718090:intron 15.0%
!!! CATTTCTAAAATAAATATTG+TGG - chr5_1:12261329-12261348 Msa0718090:intron 15.0%
!! ATTAAAAATACCCATTTCAT+TGG - chr5_1:12258309-12258328 Msa0718090:three_prime_UTR 20.0%
!!! TTTAAAAATTATCACTGGTT+GGG + chr5_1:12259721-12259740 None:intergenic 20.0%
!!! TTTTAAAAATTATCACTGGT+TGG + chr5_1:12259722-12259741 None:intergenic 20.0%
!!! TAAATACATTTTGATTGGTT+TGG - chr5_1:12260056-12260075 Msa0718090:CDS 20.0%
!! CATGATCATAAAAAGAATAA+AGG + chr5_1:12261109-12261128 None:intergenic 20.0%
!!! GATGTGAAGTATTTTGTTTT+TGG + chr5_1:12258265-12258284 None:intergenic 25.0%
!!! AAAGTTTTGATTTTTCCATC+TGG - chr5_1:12258360-12258379 Msa0718090:three_prime_UTR 25.0%
!!! AAGTTTTGATTTTTCCATCT+GGG - chr5_1:12258361-12258380 Msa0718090:three_prime_UTR 25.0%
! AATCTGATCAAAGAAAAAAG+TGG - chr5_1:12258402-12258421 Msa0718090:three_prime_UTR 25.0%
! ATCTGATCAAAGAAAAAAGT+GGG - chr5_1:12258403-12258422 Msa0718090:three_prime_UTR 25.0%
!! TTTTTCATGATTTTCACATG+TGG - chr5_1:12258656-12258675 Msa0718090:CDS 25.0%
!!! TTGTTTGTTATGTTTTGTGT+AGG - chr5_1:12258724-12258743 Msa0718090:CDS 25.0%
! TAGGTTTATTAGCTCAAATT+TGG - chr5_1:12258743-12258762 Msa0718090:CDS 25.0%
!! TTTGTTTGTTACTGAATGAA+TGG - chr5_1:12258794-12258813 Msa0718090:CDS 25.0%
! CCAACAAAAAAAGGAATTAT+CGG + chr5_1:12258875-12258894 None:intergenic 25.0%
!!! ATTCCTTTTTTTGTTGGAAT+TGG - chr5_1:12258878-12258897 Msa0718090:CDS 25.0%
! ATTCCAATTCCAACAAAAAA+AGG + chr5_1:12258884-12258903 None:intergenic 25.0%
! AATTGGAATAGCTGAAAATT+GGG - chr5_1:12258895-12258914 Msa0718090:CDS 25.0%
! GACAAAAACAATGTAACATA+AGG + chr5_1:12258949-12258968 None:intergenic 25.0%
!!! TTTTTTTGCTGTCAAGATTT+AGG - chr5_1:12259106-12259125 Msa0718090:intron 25.0%
!! AAGATTTAGGAGACATTTTA+TGG - chr5_1:12259119-12259138 Msa0718090:intron 25.0%
! ACGTTAGAAACAAATACATT+TGG - chr5_1:12259206-12259225 Msa0718090:intron 25.0%
! ATTTGGTAGACATATTAGAA+TGG - chr5_1:12259223-12259242 Msa0718090:intron 25.0%
! TTTGGTAGACATATTAGAAT+GGG - chr5_1:12259224-12259243 Msa0718090:intron 25.0%
! TATTATGTTTGACCTATGTT+TGG - chr5_1:12259272-12259291 Msa0718090:intron 25.0%
! TATTGGTGCAAATTAACAAA+CGG - chr5_1:12259409-12259428 Msa0718090:intron 25.0%
!!! GACAATTGGTTTGTTTTATT+TGG - chr5_1:12259505-12259524 Msa0718090:intron 25.0%
! CTTCATTAACTTAATCAAGA+TGG - chr5_1:12259552-12259571 Msa0718090:intron 25.0%
! GCTTAAAGTTATCAATCAAT+TGG + chr5_1:12259915-12259934 None:intergenic 25.0%
! ATCTCTCTAACTTTATTCAA+TGG + chr5_1:12260033-12260052 None:intergenic 25.0%
!! GAAAATAGAAGAATGTTTTC+AGG + chr5_1:12260126-12260145 None:intergenic 25.0%
!!! TTACAAGTCTTATTGAGAAA+AGG - chr5_1:12260229-12260248 Msa0718090:CDS 25.0%
!!! ATTTTTCTAGTAAACTGTTG+TGG - chr5_1:12260590-12260609 Msa0718090:intron 25.0%
! GGTTTAATATGTGAAAAAAC+TGG - chr5_1:12260653-12260672 Msa0718090:intron 25.0%
! CATTAATAAAAAGAGACACA+GGG - chr5_1:12260696-12260715 Msa0718090:intron 25.0%
! ATTAATAAAAAGAGACACAG+GGG - chr5_1:12260697-12260716 Msa0718090:intron 25.0%
! GAAACTTTGAATTTCATTCT+CGG + chr5_1:12261022-12261041 None:intergenic 25.0%
! CTTAAATTGTTGTATGCAAA+AGG - chr5_1:12261068-12261087 Msa0718090:intron 25.0%
!! TCTTTTTATGATCATGTTGA+AGG - chr5_1:12261113-12261132 Msa0718090:intron 25.0%
!! CTTTTTATGATCATGTTGAA+GGG - chr5_1:12261114-12261133 Msa0718090:intron 25.0%
! GATTCATTTCTCATTTCATT+TGG + chr5_1:12261620-12261639 None:intergenic 25.0%
!!! ATTTTGACTATGTCAAAACA+CGG + chr5_1:12261852-12261871 None:intergenic 25.0%
! TACAAAGAATGTCACTAAAT+TGG + chr5_1:12261929-12261948 None:intergenic 25.0%
! TTTAGTGACATTCTTTGTAT+TGG - chr5_1:12261930-12261949 Msa0718090:five_prime_UTR 25.0%
! ATTTTGTGTAGGAAATTGCT+TGG + chr5_1:12258287-12258306 None:intergenic 30.0%
TTGAGAATCACCAATGAAAT+GGG + chr5_1:12258322-12258341 None:intergenic 30.0%
TTTGAGAATCACCAATGAAA+TGG + chr5_1:12258323-12258342 None:intergenic 30.0%
AGTATAAGAAGAACATACAG+AGG + chr5_1:12258609-12258628 None:intergenic 30.0%
!!! CCGATAATTCCTTTTTTTGT+TGG - chr5_1:12258872-12258891 Msa0718090:CDS 30.0%
GAATTGGAATAGCTGAAAAT+TGG - chr5_1:12258894-12258913 Msa0718090:CDS 30.0%
AAACAATGTAACATAAGGTC+AGG + chr5_1:12258944-12258963 None:intergenic 30.0%
CATGTACCATTTATGTTTGT+TGG - chr5_1:12259021-12259040 Msa0718090:CDS 30.0%
GTACTTCCAACAAACATAAA+TGG + chr5_1:12259030-12259049 None:intergenic 30.0%
! TTTATGTTTGTTGGAAGTAC+CGG - chr5_1:12259030-12259049 Msa0718090:CDS 30.0%
ATTTATGGTATCACAAGTCT+TGG + chr5_1:12259147-12259166 None:intergenic 30.0%
AAGACTTGTGATACCATAAA+TGG - chr5_1:12259146-12259165 Msa0718090:intron 30.0%
ATGGGATGAAACATAATACT+AGG - chr5_1:12259242-12259261 Msa0718090:intron 30.0%
TGGGATGAAACATAATACTA+GGG - chr5_1:12259243-12259262 Msa0718090:intron 30.0%
ATTGAAGTGTATCCAAACAT+AGG + chr5_1:12259287-12259306 None:intergenic 30.0%
TTGTAGCTTCTCAAAAATCA+CGG + chr5_1:12259332-12259351 None:intergenic 30.0%
ATTGGTGCAAATTAACAAAC+GGG - chr5_1:12259410-12259429 Msa0718090:intron 30.0%
!!! AGGAGACTGTTGTTTTAATA+TGG + chr5_1:12259580-12259599 None:intergenic 30.0%
ATATTAAAACAACAGTCTCC+TGG - chr5_1:12259579-12259598 Msa0718090:intron 30.0%
GGATATTAATCTTAGCAACA+GGG + chr5_1:12259605-12259624 None:intergenic 30.0%
TGGATATTAATCTTAGCAAC+AGG + chr5_1:12259606-12259625 None:intergenic 30.0%
ACATGAAGAAAAGATGAACT+TGG + chr5_1:12259626-12259645 None:intergenic 30.0%
CAACAAACTTTGAATTCGAT+GGG + chr5_1:12259891-12259910 None:intergenic 30.0%
ACAACAAACTTTGAATTCGA+TGG + chr5_1:12259892-12259911 None:intergenic 30.0%
! ATTGATAACTTTAAGCACAC+AGG - chr5_1:12259919-12259938 Msa0718090:CDS 30.0%
ATCAAATACAGCCATTACAA+AGG - chr5_1:12260003-12260022 Msa0718090:CDS 30.0%
AAGTCTAGTAGAAATATCGA+CGG - chr5_1:12260330-12260349 Msa0718090:CDS 30.0%
TGTAAATAACATATCTCCAG+TGG + chr5_1:12260526-12260545 None:intergenic 30.0%
! GATATGTTATTTACACCCAA+AGG - chr5_1:12260531-12260550 Msa0718090:intron 30.0%
! CCTGTGTCTCTTTTTATTAA+TGG + chr5_1:12260698-12260717 None:intergenic 30.0%
CCATTAATAAAAAGAGACAC+AGG - chr5_1:12260695-12260714 Msa0718090:intron 30.0%
GTACTAAATAATATGTGTCC+TGG - chr5_1:12260936-12260955 Msa0718090:intron 30.0%
!! GTTTTTATTTCCCTAAACGA+TGG - chr5_1:12260978-12260997 Msa0718090:intron 30.0%
CATAAAAACTCCATCGTTTA+GGG + chr5_1:12260991-12261010 None:intergenic 30.0%
TCATAAAAACTCCATCGTTT+AGG + chr5_1:12260992-12261011 None:intergenic 30.0%
TAGGTTCTATAGAAATAGCA+TGG + chr5_1:12261174-12261193 None:intergenic 30.0%
AATGAGAAATGAATCTACTG+TGG - chr5_1:12261625-12261644 Msa0718090:intron 30.0%
AAATGAATCTACTGTGGAAA+AGG - chr5_1:12261631-12261650 Msa0718090:intron 30.0%
TTTACCACAATCAAAGAATC+TGG - chr5_1:12261725-12261744 Msa0718090:CDS 30.0%
TCAAACCATCAGATTAAGAT+CGG + chr5_1:12261782-12261801 None:intergenic 30.0%
TGGTTTGAATTGTTTGATTG+AGG - chr5_1:12261794-12261813 Msa0718090:CDS 30.0%
! ATGTCTTGTTCTTCTTCATC+AGG - chr5_1:12258428-12258447 Msa0718090:three_prime_UTR 35.0%
TTGTTCTTCTTCATCAGGAT+CGG - chr5_1:12258433-12258452 Msa0718090:three_prime_UTR 35.0%
TATATTGCTCAGAGGAAACT+TGG - chr5_1:12258539-12258558 Msa0718090:three_prime_UTR 35.0%
AGTATCATAAGCAAGCCAAA+CGG + chr5_1:12258582-12258601 None:intergenic 35.0%
ATAAGAAGAACATACAGAGG+TGG + chr5_1:12258606-12258625 None:intergenic 35.0%
GAATAGCTGAAAATTGGGAA+TGG - chr5_1:12258900-12258919 Msa0718090:CDS 35.0%
!! TTATGTTTGTTGGAAGTACC+GGG - chr5_1:12259031-12259050 Msa0718090:CDS 35.0%
AAGACAATTATTCTCGTTCC+CGG + chr5_1:12259052-12259071 None:intergenic 35.0%
CGAGAATAATTGTCTTTCTC+AGG - chr5_1:12259056-12259075 Msa0718090:intron 35.0%
!! ACATTAACTCGTGCCATTTA+TGG + chr5_1:12259162-12259181 None:intergenic 35.0%
TAAATGGCACGAGTTAATGT+AGG - chr5_1:12259162-12259181 Msa0718090:intron 35.0%
GGGATGAAACATAATACTAG+GGG - chr5_1:12259244-12259263 Msa0718090:intron 35.0%
GGATGAAACATAATACTAGG+GGG - chr5_1:12259245-12259264 Msa0718090:intron 35.0%
GATGAAACATAATACTAGGG+GGG - chr5_1:12259246-12259265 Msa0718090:intron 35.0%
!! TACAACTTGTAGCTTTGAAG+TGG - chr5_1:12259347-12259366 Msa0718090:intron 35.0%
TTGGTGCAAATTAACAAACG+GGG - chr5_1:12259411-12259430 Msa0718090:intron 35.0%
! GAGTGAAAGTGTAAAACAAG+TGG - chr5_1:12259438-12259457 Msa0718090:intron 35.0%
!! TTGTCCTGTTTTGTTCTCTT+TGG + chr5_1:12259490-12259509 None:intergenic 35.0%
AGAGAACAAAACAGGACAAT+TGG - chr5_1:12259491-12259510 Msa0718090:intron 35.0%
TCTCAAAATCCAGAAAAGTG+CGG - chr5_1:12259804-12259823 Msa0718090:CDS 35.0%
TTCTTTCAACCATTGCTGAT+GGG - chr5_1:12259863-12259882 Msa0718090:CDS 35.0%
TCAATGGAAGACCTTTGTAA+TGG + chr5_1:12260017-12260036 None:intergenic 35.0%
GATTACTTGCATAGTGAACT+TGG - chr5_1:12260078-12260097 Msa0718090:CDS 35.0%
AGTCTAGTAGAAATATCGAC+GGG - chr5_1:12260331-12260350 Msa0718090:CDS 35.0%
!!! AGATGCAAGATTGTCGATTT+TGG - chr5_1:12260363-12260382 Msa0718090:CDS 35.0%
AGACTTCAGTATAACTTCAG+GGG + chr5_1:12260448-12260467 None:intergenic 35.0%
CAGACTTCAGTATAACTTCA+GGG + chr5_1:12260449-12260468 None:intergenic 35.0%
! ATGTTATTTACACCCAAAGG+TGG - chr5_1:12260534-12260553 Msa0718090:intron 35.0%
! TATGGTTAACGAGTTTTCAG+AGG - chr5_1:12260632-12260651 Msa0718090:intron 35.0%
!! TTGATAGTGTGAAAAGTGTC+AGG - chr5_1:12260845-12260864 Msa0718090:intron 35.0%
!! TGATAGTGTGAAAAGTGTCA+GGG - chr5_1:12260846-12260865 Msa0718090:intron 35.0%
! ATTCTTTTATAGCCCATGTG+AGG - chr5_1:12260910-12260929 Msa0718090:intron 35.0%
! TTCTTTTATAGCCCATGTGA+GGG - chr5_1:12260911-12260930 Msa0718090:intron 35.0%
ATGAGAAATTGTTCGAAACC+AGG + chr5_1:12260957-12260976 None:intergenic 35.0%
TGATCATGTTGAAGGGAAAA+TGG - chr5_1:12261121-12261140 Msa0718090:intron 35.0%
AAATGAAACATGCTGACAGT+GGG + chr5_1:12261314-12261333 None:intergenic 35.0%
AATCCAAGGATTACTTTGAC+CGG - chr5_1:12261396-12261415 Msa0718090:intron 35.0%
GTGATCTAAAAAGGATTCGT+AGG - chr5_1:12261423-12261442 Msa0718090:intron 35.0%
TCAATCAGCAATTTGTCAAG+TGG + chr5_1:12261461-12261480 None:intergenic 35.0%
ACTGTGGAAAAGGTTAATGT+TGG - chr5_1:12261641-12261660 Msa0718090:intron 35.0%
TATGAGCAACCTTCAAATCA+AGG - chr5_1:12261664-12261683 Msa0718090:intron 35.0%
! ACTTTCCTACCTTGATTTGA+AGG + chr5_1:12261676-12261695 None:intergenic 35.0%
AAATCAAGGTAGGAAAGTGA+AGG - chr5_1:12261678-12261697 Msa0718090:intron 35.0%
TTGTTTGATTGAGGCAAATG+CGG - chr5_1:12261803-12261822 Msa0718090:CDS 35.0%
AACAAAACACAAGACCCAGA+TGG + chr5_1:12258378-12258397 None:intergenic 40.0%
!! ATCTGGGTCTTGTGTTTTGT+TGG - chr5_1:12258377-12258396 Msa0718090:three_prime_UTR 40.0%
ATGAGGGATTTGAGTCCTAT+CGG - chr5_1:12258465-12258484 Msa0718090:three_prime_UTR 40.0%
!! GTCAGGTTTTGTGAATTGTG+AGG + chr5_1:12258927-12258946 None:intergenic 40.0%
!! CAATAGCCTGTTTGTTTCTG+TGG + chr5_1:12259394-12259413 None:intergenic 40.0%
CACAGAAACAAACAGGCTAT+TGG - chr5_1:12259392-12259411 Msa0718090:intron 40.0%
! CTTTGGTTCGATATTCTCAG+TGG + chr5_1:12259473-12259492 None:intergenic 40.0%
CGAACCAAAGAGAACAAAAC+AGG - chr5_1:12259483-12259502 Msa0718090:intron 40.0%
AAGAACGTTGATCTCGTGAA+GGG + chr5_1:12259848-12259867 None:intergenic 40.0%
AAAGAACGTTGATCTCGTGA+AGG + chr5_1:12259849-12259868 None:intergenic 40.0%
GTTCTTTCAACCATTGCTGA+TGG - chr5_1:12259862-12259881 Msa0718090:CDS 40.0%
TCTTTCAACCATTGCTGATG+GGG - chr5_1:12259864-12259883 Msa0718090:CDS 40.0%
TTTAAGCACACAGGTCCAAA+TGG - chr5_1:12259928-12259947 Msa0718090:CDS 40.0%
TTAAGCACACAGGTCCAAAT+GGG - chr5_1:12259929-12259948 Msa0718090:CDS 40.0%
AGCTATCACCAAGAAACTCA+AGG + chr5_1:12259972-12259991 None:intergenic 40.0%
!! TTTCAGGCTTTAAGTCTGTG+TGG + chr5_1:12260110-12260129 None:intergenic 40.0%
GATCTAAAAGGGTCTTTGGA+AGG + chr5_1:12260159-12260178 None:intergenic 40.0%
! TCCAAAGACCCTTTTAGATC+CGG - chr5_1:12260159-12260178 Msa0718090:CDS 40.0%
GCGTGCAGTTGCTAAAATAT+CGG - chr5_1:12260269-12260288 Msa0718090:CDS 40.0%
CGTGCAGTTGCTAAAATATC+GGG - chr5_1:12260270-12260289 Msa0718090:CDS 40.0%
GGAAGAACAGCTTCAATTGA+AGG - chr5_1:12260291-12260310 Msa0718090:CDS 40.0%
ACAGCTTCAATTGAAGGAAG+AGG - chr5_1:12260297-12260316 Msa0718090:CDS 40.0%
!! TCGATTTTGGAAATGCGTGT+TGG - chr5_1:12260376-12260395 Msa0718090:CDS 40.0%
!! CGATTTTGGAAATGCGTGTT+GGG - chr5_1:12260377-12260396 Msa0718090:CDS 40.0%
CCAGACTTCAGTATAACTTC+AGG + chr5_1:12260450-12260469 None:intergenic 40.0%
CCTGAAGTTATACTGAAGTC+TGG - chr5_1:12260447-12260466 Msa0718090:CDS 40.0%
ATTCCTTCTCTGTAGACATG+TGG - chr5_1:12260472-12260491 Msa0718090:CDS 40.0%
TTATTTACACCCAAAGGTGG+TGG - chr5_1:12260537-12260556 Msa0718090:intron 40.0%
ATTTAGTACCTCCCTCACAT+GGG + chr5_1:12260925-12260944 None:intergenic 40.0%
TATTTAGTACCTCCCTCACA+TGG + chr5_1:12260926-12260945 None:intergenic 40.0%
!! AATGTCCTTGTGCTGATTTC+AGG - chr5_1:12261230-12261249 Msa0718090:intron 40.0%
ATGATCCTGAAATCAGCACA+AGG + chr5_1:12261238-12261257 None:intergenic 40.0%
GAAATGAAACATGCTGACAG+TGG + chr5_1:12261315-12261334 None:intergenic 40.0%
TGTGGCATATCTAATGCTTG+TGG - chr5_1:12261347-12261366 Msa0718090:intron 40.0%
! TGTGGATTGCAGATTGCAAT+TGG - chr5_1:12261365-12261384 Msa0718090:intron 40.0%
! TCCTTTTTAGATCACCATGC+CGG + chr5_1:12261418-12261437 None:intergenic 40.0%
TCTGGCGCAAAATCAAAAAG+TGG + chr5_1:12261536-12261555 None:intergenic 40.0%
AGCAACCTTCAAATCAAGGT+AGG - chr5_1:12261668-12261687 Msa0718090:intron 40.0%
GTACAATACGTGTTCTGACA+AGG - chr5_1:12261700-12261719 Msa0718090:CDS 40.0%
ATCAAAGAATCTGGACCGTT+AGG - chr5_1:12261734-12261753 Msa0718090:CDS 40.0%
GAGATCCGATCTTAATCTGA+TGG - chr5_1:12261774-12261793 Msa0718090:CDS 40.0%
TGTTTGATTGAGGCAAATGC+GGG - chr5_1:12261804-12261823 Msa0718090:CDS 40.0%
TTCTTCTTCATCAGGATCGG+AGG - chr5_1:12258436-12258455 Msa0718090:three_prime_UTR 45.0%
GGATTTGAGTCCTATCGGAA+AGG - chr5_1:12258470-12258489 Msa0718090:three_prime_UTR 45.0%
TTTGAGTCCTATCGGAAAGG+TGG - chr5_1:12258473-12258492 Msa0718090:three_prime_UTR 45.0%
ATGGTATCCACCTTTCCGAT+AGG + chr5_1:12258483-12258502 None:intergenic 45.0%
TAGAGTCGCTGATCAATTCG+CGG - chr5_1:12258508-12258527 Msa0718090:three_prime_UTR 45.0%
TTGCTCAGAGGAAACTTGGT+TGG - chr5_1:12258543-12258562 Msa0718090:three_prime_UTR 45.0%
TGCTCAGAGGAAACTTGGTT+GGG - chr5_1:12258544-12258563 Msa0718090:three_prime_UTR 45.0%
ATCATAAGCAAGCCAAACGG+TGG + chr5_1:12258579-12258598 None:intergenic 45.0%
!! AGCCTGTTTGTTTCTGTGGT+GGG + chr5_1:12259390-12259409 None:intergenic 45.0%
!! TAGCCTGTTTGTTTCTGTGG+TGG + chr5_1:12259391-12259410 None:intergenic 45.0%
TTAATCTTAGCAACAGGGCC+AGG + chr5_1:12259600-12259619 None:intergenic 45.0%
GAAACTCAAGGACCATGCAA+TGG + chr5_1:12259960-12259979 None:intergenic 45.0%
TGCATGGTCCTTGAGTTTCT+TGG - chr5_1:12259961-12259980 Msa0718090:CDS 45.0%
TCCGGATCTAAAAGGGTCTT+TGG + chr5_1:12260163-12260182 None:intergenic 45.0%
!! TTCTAAAGTTGGGGAGAGTC+CGG + chr5_1:12260181-12260200 None:intergenic 45.0%
! GACTCTCCCCAACTTTAGAA+CGG - chr5_1:12260181-12260200 Msa0718090:CDS 45.0%
!! CTCAGTCCGTTCTAAAGTTG+GGG + chr5_1:12260190-12260209 None:intergenic 45.0%
!! CCTCAGTCCGTTCTAAAGTT+GGG + chr5_1:12260191-12260210 None:intergenic 45.0%
!! CCAACTTTAGAACGGACTGA+GGG - chr5_1:12260189-12260208 Msa0718090:CDS 45.0%
AGACCACATGTCTACAGAGA+AGG + chr5_1:12260478-12260497 None:intergenic 45.0%
TAACCTTGTCCACCACCTTT+GGG + chr5_1:12260549-12260568 None:intergenic 45.0%
ATAACCTTGTCCACCACCTT+TGG + chr5_1:12260550-12260569 None:intergenic 45.0%
ACAAGGTTATAGCGAGGATG+AGG - chr5_1:12260560-12260579 Msa0718090:intron 45.0%
! TTTTATAGCCCATGTGAGGG+AGG - chr5_1:12260914-12260933 Msa0718090:intron 45.0%
GGATCATCTTGCCTTGATGA+TGG - chr5_1:12261251-12261270 Msa0718090:intron 45.0%
GGATTGCAGATTGCAATTGG+TGG - chr5_1:12261368-12261387 Msa0718090:intron 45.0%
AATTGGTGGAGCTCAATCCA+AGG - chr5_1:12261382-12261401 Msa0718090:intron 45.0%
ATGCCGGTCAAAGTAATCCT+TGG + chr5_1:12261402-12261421 None:intergenic 45.0%
AAGGATTACTTTGACCGGCA+TGG - chr5_1:12261401-12261420 Msa0718090:intron 45.0%
ACCGGCATGGTGATCTAAAA+AGG - chr5_1:12261414-12261433 Msa0718090:intron 45.0%
CAGAAAAACGACCAACTGCA+CGG - chr5_1:12261552-12261571 Msa0718090:intron 45.0%
ATTCATTGCAGTTCAGCCAG+GGG + chr5_1:12261592-12261611 None:intergenic 45.0%
GATTCATTGCAGTTCAGCCA+GGG + chr5_1:12261593-12261612 None:intergenic 45.0%
TGATTCATTGCAGTTCAGCC+AGG + chr5_1:12261594-12261613 None:intergenic 45.0%
CGGTCCAGATTCTTTGATTG+TGG + chr5_1:12261732-12261751 None:intergenic 45.0%
! CCGACTTTGTTTCGACCTAA+CGG + chr5_1:12261752-12261771 None:intergenic 45.0%
CCGTTAGGTCGAAACAAAGT+CGG - chr5_1:12261749-12261768 Msa0718090:CDS 45.0%
!!! TTAAATTTGATTTAATAATA+TGG - chr5_1:12260614-12260633 Msa0718090:intron 5.0%
!!! AAATAATATAAGTTTTTTAT+AGG + chr5_1:12261193-12261212 None:intergenic 5.0%
AGGATCGGAGGAAGATGATG+AGG - chr5_1:12258448-12258467 Msa0718090:three_prime_UTR 50.0%
GGATCGGAGGAAGATGATGA+GGG - chr5_1:12258449-12258468 Msa0718090:three_prime_UTR 50.0%
GATCAGCGACTCTAACAGCA+TGG + chr5_1:12258502-12258521 None:intergenic 50.0%
AGAGTCGCTGATCAATTCGC+GGG - chr5_1:12258509-12258528 Msa0718090:three_prime_UTR 50.0%
! GTGGGAGGTATATTGCTCAG+AGG - chr5_1:12258531-12258550 Msa0718090:three_prime_UTR 50.0%
GCTCAGAGGAAACTTGGTTG+GGG - chr5_1:12258545-12258564 Msa0718090:three_prime_UTR 50.0%
TACCACATCCCAACGCAAGT+TGG - chr5_1:12259306-12259325 Msa0718090:intron 50.0%
AATCACGGCCAACTTGCGTT+GGG + chr5_1:12259317-12259336 None:intergenic 50.0%
AAATCACGGCCAACTTGCGT+TGG + chr5_1:12259318-12259337 None:intergenic 50.0%
!! CTGTTTGTTTCTGTGGTGGG+AGG + chr5_1:12259387-12259406 None:intergenic 50.0%
CTCCCACCACAGAAACAAAC+AGG - chr5_1:12259385-12259404 Msa0718090:intron 50.0%
AAGGGCAGCCTGAACAAACT+CGG + chr5_1:12259830-12259849 None:intergenic 50.0%
!! ATGCAATGGTGCTGCCCATT+TGG + chr5_1:12259946-12259965 None:intergenic 50.0%
AAATGGGCAGCACCATTGCA+TGG - chr5_1:12259945-12259964 Msa0718090:CDS 50.0%
GGGAGAGTCCGGATCTAAAA+GGG + chr5_1:12260170-12260189 None:intergenic 50.0%
!! CCCAACTTTAGAACGGACTG+AGG - chr5_1:12260188-12260207 Msa0718090:CDS 50.0%
!! CCCTCAGTCCGTTCTAAAGT+TGG + chr5_1:12260192-12260211 None:intergenic 50.0%
CGGACTGAGGGAAACACAAA+CGG - chr5_1:12260201-12260220 Msa0718090:CDS 50.0%
ACTGAGGGAAACACAAACGG+TGG - chr5_1:12260204-12260223 Msa0718090:CDS 50.0%
ATTGCTTTCGAGCTTGCCAC+TGG - chr5_1:12260507-12260526 Msa0718090:intron 50.0%
! TGGTGGACAAGGTTATAGCG+AGG - chr5_1:12260554-12260573 Msa0718090:intron 50.0%
!! GCCTTGATGATGGAACTCCT+CGG - chr5_1:12261261-12261280 Msa0718090:intron 50.0%
TCCGAGGAGTTCCATCATCA+AGG + chr5_1:12261265-12261284 None:intergenic 50.0%
!!! CGTGCAGTTGGTCGTTTTTC+TGG + chr5_1:12261554-12261573 None:intergenic 50.0%
TCGCTGATCAATTCGCGGGT+GGG - chr5_1:12258513-12258532 Msa0718090:three_prime_UTR 55.0%
GGGGTCAATTCTCCACCGTT+TGG - chr5_1:12258564-12258583 Msa0718090:three_prime_UTR 55.0%
! CAAACTCGGCCGCACTTTTC+TGG + chr5_1:12259816-12259835 None:intergenic 55.0%
! AAGTGCGGCCGAGTTTGTTC+AGG - chr5_1:12259819-12259838 Msa0718090:CDS 55.0%
GGGGAGAGTCCGGATCTAAA+AGG + chr5_1:12260171-12260190 None:intergenic 55.0%
!! ACACCCAAAGGTGGTGGACA+AGG - chr5_1:12260543-12260562 Msa0718090:intron 55.0%
AACTCCTCGGAAAGATGCCC+CGG - chr5_1:12261274-12261293 Msa0718090:intron 55.0%
! TGGGAGTGTACTCACCTTCC+GGG + chr5_1:12261295-12261314 None:intergenic 55.0%
! GTGGGAGTGTACTCACCTTC+CGG + chr5_1:12261296-12261315 None:intergenic 55.0%
! TGCAGGTATTGCCGTGCAGT+TGG + chr5_1:12261566-12261585 None:intergenic 55.0%
CAAATGCGGGTCTGACTGCA+AGG - chr5_1:12261817-12261836 Msa0718090:CDS 55.0%
GTCGCTGATCAATTCGCGGG+TGG - chr5_1:12258512-12258531 Msa0718090:three_prime_UTR 60.0%
CTGATCAATTCGCGGGTGGG+AGG - chr5_1:12258516-12258535 Msa0718090:three_prime_UTR 60.0%
GGCCAACTTGCGTTGGGATG+TGG + chr5_1:12259311-12259330 None:intergenic 60.0%
CGATGGGTCCCCATCAGCAA+TGG + chr5_1:12259875-12259894 None:intergenic 60.0%
! GGGAGTGTACTCACCTTCCG+GGG + chr5_1:12261294-12261313 None:intergenic 60.0%
GGCAATACCTGCAACACCCC+TGG - chr5_1:12261573-12261592 Msa0718090:intron 60.0%
!! AGTTCAGCCAGGGGTGTTGC+AGG + chr5_1:12261583-12261602 None:intergenic 60.0%
! CCTTCCGGGGCATCTTTCCG+AGG + chr5_1:12261281-12261300 None:intergenic 65.0%
CCTCGGAAAGATGCCCCGGA+AGG - chr5_1:12261278-12261297 Msa0718090:intron 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 12258220 12262087 12258220 ID=Msa0718090;Name=Msa0718090
chr5_1 mRNA 12258220 12262087 12258220 ID=Msa0718090-mRNA-1;Parent=Msa0718090;Name=Msa0718090-mRNA-1;_AED=0.02;_eAED=0.02;_QI=208|1|1|1|1|1|4|390|446
chr5_1 exon 12258220 12258930 12258220 ID=Msa0718090-mRNA-1:exon:4981;Parent=Msa0718090-mRNA-1
chr5_1 exon 12259008 12259055 12259008 ID=Msa0718090-mRNA-1:exon:4980;Parent=Msa0718090-mRNA-1
chr5_1 exon 12259726 12260514 12259726 ID=Msa0718090-mRNA-1:exon:4979;Parent=Msa0718090-mRNA-1
chr5_1 exon 12261697 12262087 12261697 ID=Msa0718090-mRNA-1:exon:4978;Parent=Msa0718090-mRNA-1
chr5_1 five_prime_UTR 12261880 12262087 12261880 ID=Msa0718090-mRNA-1:five_prime_utr;Parent=Msa0718090-mRNA-1
chr5_1 CDS 12261697 12261879 12261697 ID=Msa0718090-mRNA-1:cds;Parent=Msa0718090-mRNA-1
chr5_1 CDS 12259726 12260514 12259726 ID=Msa0718090-mRNA-1:cds;Parent=Msa0718090-mRNA-1
chr5_1 CDS 12259008 12259055 12259008 ID=Msa0718090-mRNA-1:cds;Parent=Msa0718090-mRNA-1
chr5_1 CDS 12258610 12258930 12258610 ID=Msa0718090-mRNA-1:cds;Parent=Msa0718090-mRNA-1
chr5_1 three_prime_UTR 12258220 12258609 12258220 ID=Msa0718090-mRNA-1:three_prime_utr;Parent=Msa0718090-mRNA-1
Gene Sequence

>Msa0718090

ATGTCTTGTTCTTCTTCATCAGGATCGGAGGAAGATGATGAGGGATTTGAGTCCTATCGGAAAGGTGGATACCATGCTGTTAGAGTCGCTGATCAATTCGCGGGTGGGAGGTATATTGCTCAGAGGAAACTTGGTTGGGGTCAATTCTCCACCGTTTGGCTTGCTTATGATACTACCACCTCTTCATACGTTGCTCTCAAAATCCAGAAAAGTGCGGCCGAGTTTGTTCAGGCTGCCCTTCACGAGATCAACGTTCTTTCAACCATTGCTGATGGGGACCCATCGAATTCAAAGTTTGTTGTCCAATTGATTGATAACTTTAAGCACACAGGTCCAAATGGGCAGCACCATTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGTTTGATCAAATACAGCCATTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGTAAATACATTTTGATTGGTTTGGATTACTTGCATAGTGAACTTGGTATAATCCACACAGACTTAAAGCCTGAAAACATTCTTCTATTTTCAACTATTGATCCTTCCAAAGACCCTTTTAGATCCGGACTCTCCCCAACTTTAGAACGGACTGAGGGAAACACAAACGGTGGACTTACAAGTCTTATTGAGAAAAGGCTGAAGAGAAGAGCAAAGCGTGCAGTTGCTAAAATATCGGGAAGAACAGCTTCAATTGAAGGAAGAGGAGAAGCTGCAAAGTCTAGTAGAAATATCGACGGGATTGATGTGAGATGCAAGATTGTCGATTTTGGAAATGCGTGTTGGGCTGATAACAAGTTTGCAGAAGAAATACAGACAAGACAATATAGAGCCCCTGAAGTTATACTGAAGTCTGGTTATTCCTTCTCTGTAGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGAGATATGTTATTTACACCCAAAGGTGGTGGACAAGGTTATAGCGAGGATGAGGATCATCTTGCCTTGATGATGGAACTCCTCGGAAAGATGCCCCGGAAGATTGCAATTGGTGGAGCTCAATCCAAGGATTACTTTGACCGGCATGGTGATCTAAAAAGGATTCGTAGGCTAAAATTTTGTCCACTTGACAAATTGCTGATTGATAGATATAAATTTTCAGCGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTGCCACTTTTTGATTTTGCGCCAGAAAAACGACCAACTGCACGGCAATACCTGCAACACCCCTGGCTGAACTGCAATGAATCAGCGCCAAATGAAATGAGAAATGAATCTACTGTGGAAAAGGTTAATGTTGGTATGAGCAACCTTCAAATCAAGGTAGGAAAGTGA
Protein sequence

>Msa0718090

MSCSSSSGSEEDDEGFESYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTTTSSYVALKIQKSAAEFVQAALHEINVLSTIADGDPSNSKFVVQLIDNFKHTGPNGQHHCMVLEFLGDSLLRLIKYSHYKGLPLNKVREICKYILIGLDYLHSELGIIHTDLKPENILLFSTIDPSKDPFRSGLSPTLERTEGNTNGGLTSLIEKRLKRRAKRAVAKISGRTASIEGRGEAAKSSRNIDGIDVRCKIVDFGNACWADNKFAEEIQTRQYRAPEVILKSGYSFSVDMWSFACIAFELATGDMLFTPKGGGQGYSEDEDHLALMMELLGKMPRKIAIGGAQSKDYFDRHGDLKRIRRLKFCPLDKLLIDRYKFSANDAQEFSEFLLPLFDFAPEKRPTARQYLQHPWLNCNESAPNEMRNESTVEKVNVGMSNLQIKVGK*