Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718170 | XP_039685680.1 | 81.513 | 357 | 50 | 1 | 1 | 341 | 1 | 357 | 0.0 | 612 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718170 | sp|Q9SZL8|FRS5_ARATH | 30.225 | 311 | 200 | 4 | 32 | 342 | 70 | 363 | 3.70e-38 | 148 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718170 | D3YBB9 | 73.803 | 355 | 89 | 2 | 1 | 351 | 49 | 403 | 0.0 | 558 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0718170 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718170 | MtrunA17_Chr1g0172971 | 82.051 | 117 | 20 | 1 | 1 | 116 | 1 | 117 | 4.72e-58 | 197 |
| Msa0718170 | MtrunA17_Chr7g0258861 | 34.967 | 306 | 175 | 6 | 36 | 336 | 8 | 294 | 8.12e-55 | 182 |
| Msa0718170 | MtrunA17_Chr2g0324011 | 35.275 | 309 | 177 | 5 | 36 | 341 | 8 | 296 | 1.06e-53 | 186 |
| Msa0718170 | MtrunA17_Chr3g0082121 | 33.555 | 301 | 173 | 6 | 41 | 341 | 49 | 322 | 2.49e-47 | 171 |
| Msa0718170 | MtrunA17_Chr1g0202341 | 32.903 | 310 | 184 | 6 | 34 | 341 | 50 | 337 | 7.71e-45 | 163 |
| Msa0718170 | MtrunA17_Chr1g0164591 | 36.493 | 211 | 125 | 2 | 131 | 341 | 1 | 202 | 7.55e-44 | 154 |
| Msa0718170 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 188 | 260 | 1 | 73 | 7.18e-42 | 141 |
| Msa0718170 | MtrunA17_Chr1g0203721 | 28.493 | 365 | 209 | 8 | 1 | 341 | 16 | 352 | 1.84e-41 | 155 |
| Msa0718170 | MtrunA17_Chr8g0363841 | 31.475 | 305 | 184 | 7 | 40 | 341 | 22 | 304 | 9.99e-39 | 146 |
| Msa0718170 | MtrunA17_Chr5g0448761 | 29.524 | 315 | 203 | 4 | 32 | 343 | 57 | 355 | 3.93e-38 | 145 |
| Msa0718170 | MtrunA17_Chr6g0458391 | 31.894 | 301 | 168 | 6 | 41 | 341 | 231 | 494 | 1.09e-37 | 144 |
| Msa0718170 | MtrunA17_Chr2g0296781 | 29.338 | 317 | 196 | 6 | 39 | 353 | 1 | 291 | 1.70e-35 | 137 |
| Msa0718170 | MtrunA17_Chr2g0287651 | 28.803 | 309 | 191 | 8 | 39 | 341 | 79 | 364 | 4.61e-32 | 127 |
| Msa0718170 | MtrunA17_Chr2g0291591 | 27.729 | 339 | 196 | 10 | 16 | 341 | 44 | 346 | 1.04e-30 | 122 |
| Msa0718170 | MtrunA17_Chr5g0441581 | 27.692 | 325 | 201 | 8 | 32 | 353 | 26 | 319 | 1.76e-30 | 122 |
| Msa0718170 | MtrunA17_Chr6g0477261 | 35.802 | 162 | 104 | 0 | 180 | 341 | 7 | 168 | 2.41e-29 | 119 |
| Msa0718170 | MtrunA17_Chr5g0431001 | 28.387 | 310 | 197 | 8 | 40 | 341 | 66 | 358 | 4.16e-29 | 117 |
| Msa0718170 | MtrunA17_Chr5g0440451 | 25.460 | 326 | 194 | 7 | 34 | 342 | 42 | 335 | 5.32e-29 | 118 |
| Msa0718170 | MtrunA17_Chr1g0196541 | 27.246 | 334 | 207 | 9 | 39 | 369 | 1 | 301 | 1.04e-28 | 117 |
| Msa0718170 | MtrunA17_Chr1g0198761 | 27.914 | 326 | 206 | 8 | 26 | 341 | 38 | 344 | 2.31e-28 | 116 |
| Msa0718170 | MtrunA17_Chr1g0203051 | 25.081 | 307 | 207 | 4 | 50 | 354 | 94 | 379 | 1.36e-27 | 114 |
| Msa0718170 | MtrunA17_Chr3g0118611 | 41.322 | 121 | 71 | 0 | 221 | 341 | 111 | 231 | 2.14e-26 | 110 |
| Msa0718170 | MtrunA17_Chr2g0276841 | 26.846 | 298 | 194 | 7 | 49 | 341 | 84 | 362 | 6.28e-26 | 109 |
| Msa0718170 | MtrunA17_Chr2g0290391 | 26.730 | 318 | 197 | 8 | 39 | 341 | 55 | 351 | 7.95e-26 | 108 |
| Msa0718170 | MtrunA17_Chr1g0207551 | 27.500 | 320 | 192 | 10 | 31 | 341 | 30 | 318 | 1.75e-25 | 108 |
| Msa0718170 | MtrunA17_Chr2g0287061 | 28.990 | 307 | 155 | 10 | 41 | 343 | 189 | 436 | 2.98e-25 | 107 |
| Msa0718170 | MtrunA17_Chr2g0294841 | 28.065 | 310 | 194 | 10 | 41 | 341 | 51 | 340 | 7.27e-25 | 106 |
| Msa0718170 | MtrunA17_Chr2g0329031 | 25.846 | 325 | 200 | 8 | 23 | 341 | 2 | 291 | 1.49e-24 | 105 |
| Msa0718170 | MtrunA17_Chr2g0291581 | 24.516 | 310 | 200 | 4 | 38 | 347 | 74 | 349 | 8.88e-23 | 100 |
| Msa0718170 | MtrunA17_Chr5g0448511 | 37.795 | 127 | 78 | 1 | 216 | 342 | 1 | 126 | 2.50e-22 | 98.6 |
| Msa0718170 | MtrunA17_Chr3g0080351 | 26.299 | 308 | 197 | 6 | 34 | 341 | 75 | 352 | 1.74e-21 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718170 | AT4G38180.1 | 30.225 | 311 | 200 | 4 | 32 | 342 | 70 | 363 | 3.76e-39 | 148 |
| Msa0718170 | AT3G06250.2 | 27.796 | 313 | 162 | 7 | 34 | 343 | 189 | 440 | 2.41e-29 | 120 |
| Msa0718170 | AT3G06250.1 | 27.796 | 313 | 162 | 7 | 34 | 343 | 189 | 440 | 2.41e-29 | 120 |
| Msa0718170 | AT3G06250.3 | 27.796 | 313 | 162 | 7 | 34 | 343 | 189 | 440 | 2.41e-29 | 120 |
| Msa0718170 | AT5G28530.1 | 26.115 | 314 | 202 | 6 | 40 | 341 | 60 | 355 | 4.31e-28 | 116 |
| Msa0718170 | AT5G28530.3 | 26.115 | 314 | 202 | 6 | 40 | 341 | 60 | 355 | 4.53e-28 | 116 |
| Msa0718170 | AT5G28530.2 | 26.115 | 314 | 202 | 6 | 40 | 341 | 60 | 355 | 4.53e-28 | 116 |
| Msa0718170 | AT4G15090.1 | 28.956 | 297 | 182 | 8 | 50 | 341 | 66 | 338 | 6.56e-26 | 110 |
| Msa0718170 | AT4G15090.5 | 28.956 | 297 | 182 | 8 | 50 | 341 | 66 | 338 | 6.56e-26 | 110 |
| Msa0718170 | AT4G15090.3 | 28.956 | 297 | 182 | 8 | 50 | 341 | 66 | 338 | 6.56e-26 | 110 |
| Msa0718170 | AT4G15090.2 | 28.956 | 297 | 182 | 8 | 50 | 341 | 66 | 338 | 6.56e-26 | 110 |
| Msa0718170 | AT4G15090.4 | 28.956 | 297 | 182 | 8 | 50 | 341 | 66 | 338 | 6.56e-26 | 110 |
| Msa0718170 | AT1G80010.1 | 28.105 | 306 | 189 | 10 | 41 | 339 | 101 | 382 | 2.80e-25 | 107 |
| Msa0718170 | AT2G27110.2 | 29.493 | 217 | 136 | 4 | 127 | 341 | 108 | 309 | 8.13e-25 | 106 |
| Msa0718170 | AT2G27110.1 | 29.493 | 217 | 136 | 4 | 127 | 341 | 108 | 309 | 8.13e-25 | 106 |
| Msa0718170 | AT5G18960.2 | 25.846 | 325 | 176 | 9 | 24 | 343 | 200 | 464 | 8.66e-25 | 106 |
| Msa0718170 | AT5G18960.1 | 25.846 | 325 | 176 | 9 | 24 | 343 | 200 | 464 | 8.66e-25 | 106 |
| Msa0718170 | AT2G27110.3 | 36.434 | 129 | 82 | 0 | 213 | 341 | 36 | 164 | 7.05e-24 | 103 |
| Msa0718170 | AT1G10240.2 | 25.407 | 307 | 205 | 7 | 40 | 341 | 53 | 340 | 1.47e-23 | 102 |
| Msa0718170 | AT1G10240.1 | 25.407 | 307 | 205 | 7 | 40 | 341 | 53 | 340 | 1.47e-23 | 102 |
| Msa0718170 | AT1G76320.3 | 24.490 | 294 | 190 | 6 | 50 | 341 | 12 | 275 | 3.52e-22 | 98.6 |
| Msa0718170 | AT2G32250.2 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 4.35e-22 | 98.6 |
| Msa0718170 | AT2G32250.4 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 4.35e-22 | 98.6 |
| Msa0718170 | AT4G38170.1 | 41.284 | 109 | 59 | 2 | 235 | 342 | 24 | 128 | 4.57e-22 | 98.2 |
| Msa0718170 | AT1G76320.2 | 24.490 | 294 | 190 | 6 | 50 | 341 | 12 | 275 | 4.65e-22 | 98.2 |
| Msa0718170 | AT2G32250.6 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 4.69e-22 | 98.6 |
| Msa0718170 | AT2G32250.1 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 4.69e-22 | 98.6 |
| Msa0718170 | AT2G32250.3 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 4.69e-22 | 98.6 |
| Msa0718170 | AT1G76320.1 | 24.490 | 294 | 190 | 6 | 50 | 341 | 12 | 275 | 4.74e-22 | 98.2 |
| Msa0718170 | AT1G76320.4 | 24.490 | 294 | 190 | 6 | 50 | 341 | 12 | 275 | 4.74e-22 | 98.2 |
| Msa0718170 | AT2G32250.5 | 25.656 | 343 | 185 | 9 | 1 | 341 | 8 | 282 | 5.18e-22 | 98.2 |
| Msa0718170 | AT2G32250.7 | 26.531 | 294 | 150 | 7 | 50 | 341 | 12 | 241 | 1.24e-21 | 97.1 |
| Msa0718170 | AT2G32250.8 | 26.531 | 294 | 150 | 7 | 50 | 341 | 12 | 241 | 1.33e-21 | 97.1 |
| Msa0718170 | AT3G22170.2 | 24.051 | 316 | 195 | 7 | 34 | 341 | 69 | 347 | 3.19e-19 | 89.7 |
| Msa0718170 | AT3G22170.1 | 24.051 | 316 | 195 | 7 | 34 | 341 | 69 | 347 | 3.19e-19 | 89.7 |
| Msa0718170 | AT1G52520.1 | 24.104 | 307 | 201 | 7 | 41 | 347 | 91 | 365 | 2.05e-17 | 84.3 |
| Msa0718170 | AT4G19990.3 | 23.948 | 309 | 178 | 8 | 41 | 341 | 27 | 286 | 2.33e-14 | 75.1 |
| Msa0718170 | AT4G19990.4 | 23.948 | 309 | 178 | 8 | 41 | 341 | 27 | 286 | 2.33e-14 | 75.1 |
| Msa0718170 | AT4G19990.6 | 23.948 | 309 | 178 | 8 | 41 | 341 | 27 | 286 | 2.59e-14 | 75.1 |
| Msa0718170 | AT4G19990.2 | 23.948 | 309 | 178 | 8 | 41 | 341 | 27 | 286 | 2.59e-14 | 75.1 |
| Msa0718170 | AT4G19990.7 | 23.948 | 309 | 178 | 8 | 41 | 341 | 41 | 300 | 2.60e-14 | 74.7 |
| Msa0718170 | AT4G19990.5 | 23.948 | 309 | 178 | 8 | 41 | 341 | 27 | 286 | 2.74e-14 | 74.7 |
| Msa0718170 | AT4G19990.1 | 33.871 | 124 | 81 | 1 | 219 | 341 | 106 | 229 | 5.68e-14 | 73.9 |
Find 50 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5_1:+12345278 | None:intergenic |
| TACATTTCAGCTGCCTTTCT+TGG | 0.197151 | 5_1:-12345458 | Msa0718170:intron |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5_1:-12345980 | Msa0718170:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.271724 | 5_1:+12345331 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5_1:-12345425 | Msa0718170:CDS |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5_1:+12345284 | None:intergenic |
| TTTGAACTTTGGTGCAGATA+TGG | 0.336981 | 5_1:+12345313 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.339462 | 5_1:+12345930 | None:intergenic |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_1:-12345923 | Msa0718170:intron |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5_1:+12346460 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5_1:-12345292 | Msa0718170:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_1:+12345302 | None:intergenic |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5_1:+12346699 | None:intergenic |
| GCCGAACAAACAATAAATAT+CGG | 0.406788 | 5_1:-12345931 | Msa0718170:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5_1:-12346689 | Msa0718170:CDS |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5_1:-12346618 | Msa0718170:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_1:-12346283 | Msa0718170:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_1:-12346401 | Msa0718170:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5_1:-12346369 | Msa0718170:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_1:-12346418 | Msa0718170:CDS |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5_1:-12346535 | Msa0718170:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_1:-12346253 | Msa0718170:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5_1:-12346764 | Msa0718170:CDS |
| TTTGGTGCAGATATGGTTTG+AGG | 0.466929 | 5_1:+12345320 | None:intergenic |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5_1:-12346569 | Msa0718170:CDS |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_1:+12346424 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5_1:-12346631 | Msa0718170:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 5_1:-12346140 | Msa0718170:CDS |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5_1:-12346575 | Msa0718170:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5_1:+12345445 | None:intergenic |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_1:-12346127 | Msa0718170:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5_1:+12346169 | None:intergenic |
| TGTCTTCTACAGCATCAACT+TGG | 0.523056 | 5_1:+12346035 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5_1:-12346365 | Msa0718170:CDS |
| AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 5_1:+12346325 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5_1:-12346524 | Msa0718170:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5_1:-12346699 | Msa0718170:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_1:-12346523 | Msa0718170:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 5_1:-12346221 | Msa0718170:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_1:-12346073 | Msa0718170:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5_1:-12346740 | Msa0718170:CDS |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 5_1:-12346208 | Msa0718170:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 5_1:-12346134 | Msa0718170:CDS |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 5_1:-12346131 | Msa0718170:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 5_1:-12346775 | Msa0718170:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5_1:+12346475 | None:intergenic |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 5_1:-12346205 | Msa0718170:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 5_1:-12346220 | Msa0718170:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5_1:-12346366 | Msa0718170:CDS |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 5_1:-12346214 | Msa0718170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTATGCATATAACAC+TGG | - | chr5_1:12345397-12345416 | Msa0718170:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr5_1:12345453-12345472 | Msa0718170:intron | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr5_1:12345659-12345678 | Msa0718170:intron | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr5_1:12346252-12346271 | Msa0718170:CDS | 20.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr5_1:12345397-12345416 | Msa0718170:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr5_1:12345453-12345472 | Msa0718170:intron | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr5_1:12345659-12345678 | Msa0718170:intron | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr5_1:12346252-12346271 | Msa0718170:CDS | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr5_1:12345288-12345307 | Msa0718170:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr5_1:12345449-12345468 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr5_1:12345459-12345478 | Msa0718170:intron | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr5_1:12345662-12345681 | Msa0718170:intron | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr5_1:12345663-12345682 | Msa0718170:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5_1:12345775-12345794 | Msa0718170:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5_1:12346010-12346029 | Msa0718170:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5_1:12346011-12346030 | Msa0718170:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5_1:12346123-12346142 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5_1:12346170-12346189 | Msa0718170:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5_1:12346272-12346291 | Msa0718170:CDS | 25.0% |
| ! | AATTTAATGTTCTGGTCTAT+TGG | - | chr5_1:12346280-12346299 | Msa0718170:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5_1:12346541-12346560 | Msa0718170:CDS | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr5_1:12346775-12346794 | Msa0718170:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr5_1:12346776-12346795 | Msa0718170:CDS | 25.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr5_1:12345288-12345307 | Msa0718170:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr5_1:12345449-12345468 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr5_1:12345459-12345478 | Msa0718170:intron | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr5_1:12345662-12345681 | Msa0718170:intron | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr5_1:12345663-12345682 | Msa0718170:intron | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5_1:12345775-12345794 | Msa0718170:intron | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5_1:12346010-12346029 | Msa0718170:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5_1:12346011-12346030 | Msa0718170:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5_1:12346123-12346142 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5_1:12346170-12346189 | Msa0718170:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5_1:12346272-12346291 | Msa0718170:CDS | 25.0% |
| ! | AATTTAATGTTCTGGTCTAT+TGG | - | chr5_1:12346280-12346299 | Msa0718170:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5_1:12346541-12346560 | Msa0718170:CDS | 25.0% |
| ! | AAAGTGATTATGAAAAAGCT+AGG | - | chr5_1:12346775-12346794 | Msa0718170:CDS | 25.0% |
| ! | AAGTGATTATGAAAAAGCTA+GGG | - | chr5_1:12346776-12346795 | Msa0718170:CDS | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr5_1:12345332-12345351 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr5_1:12345329-12345348 | Msa0718170:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr5_1:12345339-12345358 | Msa0718170:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5_1:12345504-12345523 | Msa0718170:intron | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5_1:12345505-12345524 | Msa0718170:intron | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5_1:12345594-12345613 | Msa0718170:intron | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5_1:12345627-12345646 | Msa0718170:intron | 30.0% |
| AAATGCTCTGCTTTATGTAA+TGG | + | chr5_1:12345706-12345725 | None:intergenic | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5_1:12345808-12345827 | Msa0718170:intron | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5_1:12345852-12345871 | Msa0718170:intron | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5_1:12345862-12345881 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5_1:12345976-12345995 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr5_1:12346048-12346067 | Msa0718170:CDS | 30.0% | |
| GCCGAACAAACAATAAATAT+CGG | - | chr5_1:12346097-12346116 | Msa0718170:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5_1:12346101-12346120 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5_1:12346105-12346124 | Msa0718170:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5_1:12346184-12346203 | Msa0718170:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5_1:12346209-12346228 | Msa0718170:CDS | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | + | chr5_1:12346310-12346329 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr5_1:12346343-12346362 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCTCAA+TGG | - | chr5_1:12346500-12346519 | Msa0718170:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5_1:12346586-12346605 | None:intergenic | 30.0% | |
| !!! | AGACATTAGCTACTTTTGAT+TGG | - | chr5_1:12346646-12346665 | Msa0718170:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr5_1:12346700-12346719 | None:intergenic | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5_1:12346729-12346748 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr5_1:12346736-12346755 | Msa0718170:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr5_1:12346747-12346766 | None:intergenic | 30.0% | |
| CCATGATTCTTTATCACTAA+AGG | + | chr5_1:12345332-12345351 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr5_1:12345329-12345348 | Msa0718170:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr5_1:12345339-12345358 | Msa0718170:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5_1:12345504-12345523 | Msa0718170:intron | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5_1:12345505-12345524 | Msa0718170:intron | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5_1:12345594-12345613 | Msa0718170:intron | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5_1:12345627-12345646 | Msa0718170:intron | 30.0% |
| AAATGCTCTGCTTTATGTAA+TGG | + | chr5_1:12345706-12345725 | None:intergenic | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5_1:12345808-12345827 | Msa0718170:intron | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5_1:12345852-12345871 | Msa0718170:intron | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5_1:12345862-12345881 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5_1:12345976-12345995 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr5_1:12346048-12346067 | Msa0718170:CDS | 30.0% | |
| GCCGAACAAACAATAAATAT+CGG | - | chr5_1:12346097-12346116 | Msa0718170:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5_1:12346101-12346120 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5_1:12346105-12346124 | Msa0718170:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5_1:12346184-12346203 | Msa0718170:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5_1:12346209-12346228 | Msa0718170:CDS | 30.0% | |
| CACAAATTCTAAGTCAAGAT+AGG | + | chr5_1:12346310-12346329 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr5_1:12346343-12346362 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCTCAA+TGG | - | chr5_1:12346500-12346519 | Msa0718170:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5_1:12346586-12346605 | None:intergenic | 30.0% | |
| !!! | AGACATTAGCTACTTTTGAT+TGG | - | chr5_1:12346646-12346665 | Msa0718170:CDS | 30.0% |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr5_1:12346700-12346719 | None:intergenic | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5_1:12346729-12346748 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr5_1:12346736-12346755 | Msa0718170:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr5_1:12346747-12346766 | None:intergenic | 30.0% | |
| ATATCAACTTCATCTGAGAG+TGG | - | chr5_1:12345253-12345272 | Msa0718170:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr5_1:12345410-12345429 | Msa0718170:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5_1:12345493-12345512 | Msa0718170:intron | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5_1:12345530-12345549 | Msa0718170:intron | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5_1:12345571-12345590 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5_1:12345588-12345607 | Msa0718170:intron | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5_1:12345593-12345612 | Msa0718170:intron | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5_1:12345745-12345764 | Msa0718170:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5_1:12345807-12345826 | Msa0718170:intron | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5_1:12346603-12346622 | Msa0718170:CDS | 35.0% |
| ! | TTTGAACTTTGGTGCAGATA+TGG | + | chr5_1:12346718-12346737 | None:intergenic | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr5_1:12345253-12345272 | Msa0718170:CDS | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr5_1:12345410-12345429 | Msa0718170:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5_1:12345493-12345512 | Msa0718170:intron | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5_1:12345530-12345549 | Msa0718170:intron | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5_1:12345571-12345590 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5_1:12345588-12345607 | Msa0718170:intron | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5_1:12345593-12345612 | Msa0718170:intron | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5_1:12345745-12345764 | Msa0718170:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5_1:12345807-12345826 | Msa0718170:intron | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5_1:12346603-12346622 | Msa0718170:CDS | 35.0% |
| ! | TTTGAACTTTGGTGCAGATA+TGG | + | chr5_1:12346718-12346737 | None:intergenic | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr5_1:12345264-12345283 | Msa0718170:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5_1:12345544-12345563 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr5_1:12345814-12345833 | Msa0718170:intron | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | - | chr5_1:12345888-12345907 | Msa0718170:intron | 40.0% | |
| TGTCTTCTACAGCATCAACT+TGG | + | chr5_1:12345996-12346015 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5_1:12346018-12346037 | Msa0718170:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr5_1:12346190-12346209 | Msa0718170:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5_1:12346436-12346455 | Msa0718170:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5_1:12346440-12346459 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr5_1:12346570-12346589 | Msa0718170:CDS | 40.0% | |
| ! | TTTGGTGCAGATATGGTTTG+AGG | + | chr5_1:12346711-12346730 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr5_1:12346753-12346772 | None:intergenic | 40.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr5_1:12345264-12345283 | Msa0718170:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5_1:12345544-12345563 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr5_1:12345814-12345833 | Msa0718170:intron | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | - | chr5_1:12345888-12345907 | Msa0718170:intron | 40.0% | |
| TGTCTTCTACAGCATCAACT+TGG | + | chr5_1:12345996-12346015 | None:intergenic | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5_1:12346018-12346037 | Msa0718170:CDS | 40.0% |
| ! | TGGTTTAGAATTGAAGGCTC+TGG | - | chr5_1:12346190-12346209 | Msa0718170:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5_1:12346436-12346455 | Msa0718170:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5_1:12346440-12346459 | None:intergenic | 40.0% | |
| TACATTTCAGCTGCCTTTCT+TGG | - | chr5_1:12346570-12346589 | Msa0718170:CDS | 40.0% | |
| ! | TTTGGTGCAGATATGGTTTG+AGG | + | chr5_1:12346711-12346730 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr5_1:12346753-12346772 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr5_1:12345556-12345575 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5_1:12345598-12345617 | Msa0718170:intron | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5_1:12345607-12345626 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5_1:12345610-12345629 | Msa0718170:intron | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5_1:12345955-12345974 | Msa0718170:CDS | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr5_1:12346323-12346342 | Msa0718170:CDS | 45.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr5_1:12345556-12345575 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5_1:12345598-12345617 | Msa0718170:intron | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5_1:12345607-12345626 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5_1:12345610-12345629 | Msa0718170:intron | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5_1:12345955-12345974 | Msa0718170:CDS | 45.0% | |
| ATTTGTGCTCTGTACAGCCA+TGG | - | chr5_1:12346323-12346342 | Msa0718170:CDS | 45.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr5_1:12345820-12345839 | Msa0718170:intron | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | - | chr5_1:12345894-12345913 | Msa0718170:intron | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr5_1:12345897-12345916 | Msa0718170:intron | 50.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr5_1:12345820-12345839 | Msa0718170:intron | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | - | chr5_1:12345894-12345913 | Msa0718170:intron | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr5_1:12345897-12345916 | Msa0718170:intron | 50.0% | |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr5_1:12345823-12345842 | Msa0718170:intron | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5_1:12345901-12345920 | Msa0718170:intron | 55.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr5_1:12345823-12345842 | Msa0718170:intron | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5_1:12345901-12345920 | Msa0718170:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 12345244 | 12346806 | 12345244 | ID=Msa0718170;Name=Msa0718170 |
| chr5_1 | mRNA | 12345244 | 12346806 | 12345244 | ID=Msa0718170-mRNA-1;Parent=Msa0718170;Name=Msa0718170-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|1|0|1|1|1|2|0|369 |
| chr5_1 | exon | 12345924 | 12346806 | 12345924 | ID=Msa0718170-mRNA-1:exon:5038;Parent=Msa0718170-mRNA-1 |
| chr5_1 | exon | 12345244 | 12345470 | 12345244 | ID=Msa0718170-mRNA-1:exon:5037;Parent=Msa0718170-mRNA-1 |
| chr5_1 | CDS | 12345924 | 12346806 | 12345924 | ID=Msa0718170-mRNA-1:cds;Parent=Msa0718170-mRNA-1 |
| chr5_1 | CDS | 12345244 | 12345470 | 12345244 | ID=Msa0718170-mRNA-1:cds;Parent=Msa0718170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
