Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718450 | XP_024640623.1 | 92.982 | 171 | 7 | 1 | 1 | 166 | 1 | 171 | 2.53e-109 | 330 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718450 | A0A072TDR2 | 92.105 | 152 | 7 | 1 | 20 | 166 | 1 | 152 | 2.09e-98 | 293 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0718450 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718450 | MtrunA17_Chr2g0289081 | 60.714 | 56 | 22 | 0 | 37 | 92 | 57 | 112 | 3.08e-19 | 80.9 |
| Msa0718450 | MtrunA17_Chr5g0448761 | 30.147 | 136 | 87 | 2 | 38 | 165 | 54 | 189 | 2.82e-13 | 68.9 |
| Msa0718450 | MtrunA17_Chr1g0198761 | 34.146 | 123 | 63 | 5 | 50 | 156 | 53 | 173 | 7.15e-12 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718450 | AT4G38180.1 | 30.075 | 133 | 84 | 3 | 41 | 165 | 70 | 201 | 2.42e-11 | 63.5 |
Find 25 sgRNAs with CRISPR-Local
Find 216 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTTCTTCGGCATTTGATTT+TGG | 0.192710 | 5_1:+12698827 | None:intergenic |
| TATTGATCCTTGTATTGATA+TGG | 0.239238 | 5_1:-12698588 | Msa0718450:CDS |
| CGCTTTAAAATATATTCATT+TGG | 0.310558 | 5_1:+12696956 | None:intergenic |
| GCAATACAATCACAGTAAAA+AGG | 0.311417 | 5_1:-12698412 | Msa0718450:CDS |
| CCAAGAGTATAAACTATCTT+AGG | 0.313740 | 5_1:-12698265 | Msa0718450:CDS |
| AAATGTAATGATAGTCCATT+TGG | 0.314496 | 5_1:+12698319 | None:intergenic |
| CCTAAGATAGTTTATACTCT+TGG | 0.340102 | 5_1:+12698265 | None:intergenic |
| CTAAGATAGTTTATACTCTT+GGG | 0.346829 | 5_1:+12698266 | None:intergenic |
| ATTATGCAGACATATCTTGA+TGG | 0.397243 | 5_1:-12697008 | Msa0718450:intron |
| CATGTTATGACTATCTTCTT+CGG | 0.402279 | 5_1:+12698814 | None:intergenic |
| TGGACAAAGGATGCTAATAT+TGG | 0.412634 | 5_1:-12696932 | Msa0718450:CDS |
| AACATCAAGAACTGATTGTA+AGG | 0.444776 | 5_1:-12698375 | Msa0718450:CDS |
| ATATTTGTTTGCTCTAATGC+TGG | 0.447741 | 5_1:-12698467 | Msa0718450:CDS |
| TGAACATCTAAGTCATGCTC+AGG | 0.476339 | 5_1:+12698623 | None:intergenic |
| AATGTAATGATAGTCCATTT+GGG | 0.500833 | 5_1:+12698320 | None:intergenic |
| GGTCAGATAATAAACTTGCT+TGG | 0.514870 | 5_1:+12696828 | None:intergenic |
| GCTAATATTGGCATTATATG+TGG | 0.529640 | 5_1:-12696920 | Msa0718450:CDS |
| TCATAACATGGAGGACATAG+AGG | 0.553789 | 5_1:-12698801 | Msa0718450:intron |
| TAAGATAGTTTATACTCTTG+GGG | 0.560800 | 5_1:+12698267 | None:intergenic |
| TGTCGTTACTATCAACATGT+TGG | 0.595608 | 5_1:+12698444 | None:intergenic |
| CGAAGAAGATAGTCATAACA+TGG | 0.604552 | 5_1:-12698813 | Msa0718450:CDS |
| CAATACTCATAATCATGCAA+TGG | 0.611156 | 5_1:-12698294 | Msa0718450:CDS |
| TCAAATTCCATATCAATACA+AGG | 0.614636 | 5_1:+12698581 | None:intergenic |
| GAACATCTAAGTCATGCTCA+GGG | 0.664893 | 5_1:+12698624 | None:intergenic |
| AGAAGATAGTCATAACATGG+AGG | 0.736903 | 5_1:-12698810 | Msa0718450:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAGAATGATTAATTTTTTT+GGG | - | chr5_1:12697655-12697674 | Msa0718450:intron | 10.0% |
| !!! | ATAGAATGATTAATTTTTTT+GGG | - | chr5_1:12697655-12697674 | Msa0718450:intron | 10.0% |
| !!! | GATAGAATGATTAATTTTTT+TGG | - | chr5_1:12697654-12697673 | Msa0718450:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr5_1:12698117-12698136 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr5_1:12698117-12698136 | Msa0718450:intron | 15.0% |
| !!! | GATAGAATGATTAATTTTTT+TGG | - | chr5_1:12697654-12697673 | Msa0718450:intron | 15.0% |
| !! | AATCATATTTAACCATTATT+TGG | + | chr5_1:12698117-12698136 | None:intergenic | 15.0% |
| !! | AATAATGGTTAAATATGATT+TGG | - | chr5_1:12698117-12698136 | Msa0718450:intron | 15.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr5_1:12697620-12697639 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr5_1:12697621-12697640 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr5_1:12697702-12697721 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr5_1:12697907-12697926 | Msa0718450:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr5_1:12698131-12698150 | Msa0718450:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr5_1:12698193-12698212 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr5_1:12698606-12698625 | Msa0718450:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr5_1:12698607-12698626 | Msa0718450:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr5_1:12698688-12698707 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr5_1:12698689-12698708 | Msa0718450:intron | 20.0% |
| !! | GTATTGCATAAAAGAAATTT+GGG | + | chr5_1:12697620-12697639 | None:intergenic | 20.0% |
| !! | TGTATTGCATAAAAGAAATT+TGG | + | chr5_1:12697621-12697640 | None:intergenic | 20.0% |
| !! | AACATCTCCAAAATAATTAT+AGG | + | chr5_1:12697702-12697721 | None:intergenic | 20.0% |
| !! | AATAATTACAGATCAAGATA+AGG | - | chr5_1:12697907-12697926 | Msa0718450:intron | 20.0% |
| !!! | ATGATTTGGAAAAAAATGAA+TGG | - | chr5_1:12698131-12698150 | Msa0718450:intron | 20.0% |
| !! | AAGGTCTTCATATTATAAAT+AGG | + | chr5_1:12698193-12698212 | None:intergenic | 20.0% |
| !! | TTGTCAACTTTATGAATTTA+TGG | - | chr5_1:12698606-12698625 | Msa0718450:CDS | 20.0% |
| !! | TGTCAACTTTATGAATTTAT+GGG | - | chr5_1:12698607-12698626 | Msa0718450:CDS | 20.0% |
| !!! | CGCTTTAAAATATATTCATT+TGG | + | chr5_1:12698688-12698707 | None:intergenic | 20.0% |
| !!! | ATGAATATATTTTAAAGCGT+TGG | - | chr5_1:12698689-12698708 | Msa0718450:intron | 20.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr5_1:12697053-12697072 | Msa0718450:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr5_1:12697063-12697082 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr5_1:12697111-12697130 | Msa0718450:intron | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr5_1:12697117-12697136 | Msa0718450:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr5_1:12697298-12697317 | Msa0718450:intron | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr5_1:12697324-12697343 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr5_1:12697325-12697344 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr5_1:12697377-12697396 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr5_1:12697378-12697397 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr5_1:12697902-12697921 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr5_1:12698033-12698052 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr5_1:12698081-12698100 | Msa0718450:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr5_1:12698399-12698418 | Msa0718450:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr5_1:12698438-12698457 | Msa0718450:intron | 25.0% |
| !! | TATTGATCCTTGTATTGATA+TGG | - | chr5_1:12697053-12697072 | Msa0718450:intron | 25.0% |
| ! | TCAAATTCCATATCAATACA+AGG | + | chr5_1:12697063-12697082 | None:intergenic | 25.0% |
| !! | ACATCATTTGCTAAAAAAGA+AGG | - | chr5_1:12697111-12697130 | Msa0718450:intron | 25.0% |
| !! | TTTGCTAAAAAAGAAGGTTT+TGG | - | chr5_1:12697117-12697136 | Msa0718450:intron | 25.0% |
| ! | TAGTTTCAAAAGCAAAAATG+AGG | - | chr5_1:12697298-12697317 | Msa0718450:intron | 25.0% |
| ! | AATGTAATGATAGTCCATTT+GGG | + | chr5_1:12697324-12697343 | None:intergenic | 25.0% |
| ! | AAATGTAATGATAGTCCATT+TGG | + | chr5_1:12697325-12697344 | None:intergenic | 25.0% |
| ! | TAAGATAGTTTATACTCTTG+GGG | + | chr5_1:12697377-12697396 | None:intergenic | 25.0% |
| ! | CTAAGATAGTTTATACTCTT+GGG | + | chr5_1:12697378-12697397 | None:intergenic | 25.0% |
| ! | TGATCTGTAATTATTGAAAC+AGG | + | chr5_1:12697902-12697921 | None:intergenic | 25.0% |
| !! | GCTTGAAATTTGAACTTTTA+TGG | + | chr5_1:12698033-12698052 | None:intergenic | 25.0% |
| !! | ATTATGCATTGAAGATTTTG+AGG | - | chr5_1:12698081-12698100 | Msa0718450:intron | 25.0% |
| ! | ATCAAAAATTGAAAAGCAAG+CGG | - | chr5_1:12698399-12698418 | Msa0718450:CDS | 25.0% |
| !! | AAACATCTTTAAGAAGTTTC+AGG | - | chr5_1:12698438-12698457 | Msa0718450:intron | 25.0% |
| CATGTTATGACTATCTTCTT+CGG | + | chr5_1:12696830-12696849 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr5_1:12697174-12697193 | Msa0718450:intron | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr5_1:12697229-12697248 | Msa0718450:intron | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr5_1:12697266-12697285 | Msa0718450:intron | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr5_1:12697347-12697366 | Msa0718450:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr5_1:12697379-12697398 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr5_1:12697376-12697395 | Msa0718450:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr5_1:12697392-12697411 | Msa0718450:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr5_1:12697393-12697412 | Msa0718450:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr5_1:12697482-12697501 | Msa0718450:intron | 30.0% | |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | + | chr5_1:12697548-12697567 | None:intergenic | 30.0% |
| !!! | AATTTTTTTGGGTTGATGCA+AGG | - | chr5_1:12697666-12697685 | Msa0718450:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr5_1:12697692-12697711 | Msa0718450:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr5_1:12697776-12697795 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr5_1:12697794-12697813 | Msa0718450:intron | 30.0% |
| ! | AAACAGAGAAGTCTTTTACA+TGG | - | chr5_1:12697837-12697856 | Msa0718450:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr5_1:12697852-12697871 | Msa0718450:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | - | chr5_1:12698089-12698108 | Msa0718450:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr5_1:12698159-12698178 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr5_1:12698164-12698183 | Msa0718450:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr5_1:12698199-12698218 | Msa0718450:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr5_1:12698200-12698219 | Msa0718450:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr5_1:12698490-12698509 | Msa0718450:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr5_1:12698491-12698510 | Msa0718450:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr5_1:12698555-12698574 | Msa0718450:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr5_1:12698599-12698618 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr5_1:12698633-12698652 | Msa0718450:CDS | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr5_1:12698696-12698715 | Msa0718450:intron | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr5_1:12698721-12698740 | Msa0718450:intron | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr5_1:12698837-12698856 | None:intergenic | 30.0% |
| CATGTTATGACTATCTTCTT+CGG | + | chr5_1:12696830-12696849 | None:intergenic | 30.0% | |
| ATATTTGTTTGCTCTAATGC+TGG | - | chr5_1:12697174-12697193 | Msa0718450:intron | 30.0% | |
| GCAATACAATCACAGTAAAA+AGG | - | chr5_1:12697229-12697248 | Msa0718450:intron | 30.0% | |
| AACATCAAGAACTGATTGTA+AGG | - | chr5_1:12697266-12697285 | Msa0718450:intron | 30.0% | |
| CAATACTCATAATCATGCAA+TGG | - | chr5_1:12697347-12697366 | Msa0718450:intron | 30.0% | |
| CCTAAGATAGTTTATACTCT+TGG | + | chr5_1:12697379-12697398 | None:intergenic | 30.0% | |
| ! | CCAAGAGTATAAACTATCTT+AGG | - | chr5_1:12697376-12697395 | Msa0718450:intron | 30.0% |
| ! | TCTTAGGTGCCATAAAAAAA+TGG | - | chr5_1:12697392-12697411 | Msa0718450:intron | 30.0% |
| ! | CTTAGGTGCCATAAAAAAAT+GGG | - | chr5_1:12697393-12697412 | Msa0718450:intron | 30.0% |
| AATGTTTAGCAATGAAGGTT+CGG | - | chr5_1:12697482-12697501 | Msa0718450:intron | 30.0% | |
| !!! | CAACATCCAGTTTTTTAGAT+CGG | + | chr5_1:12697548-12697567 | None:intergenic | 30.0% |
| !!! | AATTTTTTTGGGTTGATGCA+AGG | - | chr5_1:12697666-12697685 | Msa0718450:intron | 30.0% |
| !!! | AGGTTGGCCTATAATTATTT+TGG | - | chr5_1:12697692-12697711 | Msa0718450:intron | 30.0% |
| TGATGATTCAATCCAGTAAA+TGG | + | chr5_1:12697776-12697795 | None:intergenic | 30.0% | |
| ! | CATCATCAGTCCATTTTATT+CGG | - | chr5_1:12697794-12697813 | Msa0718450:intron | 30.0% |
| ! | AAACAGAGAAGTCTTTTACA+TGG | - | chr5_1:12697837-12697856 | Msa0718450:intron | 30.0% |
| ! | TTACATGGTTGTTTGAAACT+TGG | - | chr5_1:12697852-12697871 | Msa0718450:intron | 30.0% |
| !! | TTGAAGATTTTGAGGAAGAT+TGG | - | chr5_1:12698089-12698108 | Msa0718450:intron | 30.0% |
| CTCTAATTTCATACAAACCT+TGG | + | chr5_1:12698159-12698178 | None:intergenic | 30.0% | |
| TGTATGAAATTAGAGAGTCA+TGG | - | chr5_1:12698164-12698183 | Msa0718450:intron | 30.0% | |
| !!! | AATATGAAGACCTTTTTTGC+TGG | - | chr5_1:12698199-12698218 | Msa0718450:intron | 30.0% |
| !!! | ATATGAAGACCTTTTTTGCT+GGG | - | chr5_1:12698200-12698219 | Msa0718450:intron | 30.0% |
| AAGGACAAAATCGAGAAAAA+TGG | - | chr5_1:12698490-12698509 | Msa0718450:CDS | 30.0% | |
| AGGACAAAATCGAGAAAAAT+GGG | - | chr5_1:12698491-12698510 | Msa0718450:CDS | 30.0% | |
| AGAGTCATATACTGTTTATG+TGG | - | chr5_1:12698555-12698574 | Msa0718450:CDS | 30.0% | |
| ATAAAGTTGACAACCACATT+TGG | + | chr5_1:12698599-12698618 | None:intergenic | 30.0% | |
| ATTATGCAGACATATCTTGA+TGG | - | chr5_1:12698633-12698652 | Msa0718450:CDS | 30.0% | |
| !!! | TATTTTAAAGCGTTGGACAA+AGG | - | chr5_1:12698696-12698715 | Msa0718450:intron | 30.0% |
| GCTAATATTGGCATTATATG+TGG | - | chr5_1:12698721-12698740 | Msa0718450:intron | 30.0% | |
| ! | ATATGTTCTCAGATTTTGCA+AGG | + | chr5_1:12698837-12698856 | None:intergenic | 30.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr5_1:12696817-12696836 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | - | chr5_1:12696828-12696847 | Msa0718450:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | - | chr5_1:12696831-12696850 | Msa0718450:CDS | 35.0% | |
| TGTCGTTACTATCAACATGT+TGG | + | chr5_1:12697200-12697219 | None:intergenic | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr5_1:12697434-12697453 | Msa0718450:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr5_1:12697435-12697454 | Msa0718450:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr5_1:12697469-12697488 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | - | chr5_1:12697477-12697496 | Msa0718450:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr5_1:12697505-12697524 | Msa0718450:intron | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | - | chr5_1:12697539-12697558 | Msa0718450:intron | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | - | chr5_1:12697546-12697565 | Msa0718450:intron | 35.0% | |
| AATCCAGTAAATGGTGCAAA+TGG | + | chr5_1:12697767-12697786 | None:intergenic | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr5_1:12697807-12697826 | None:intergenic | 35.0% | |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr5_1:12697859-12697878 | Msa0718450:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | + | chr5_1:12697962-12697981 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr5_1:12698011-12698030 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr5_1:12698139-12698158 | Msa0718450:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr5_1:12698212-12698231 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr5_1:12698306-12698325 | Msa0718450:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr5_1:12698569-12698588 | Msa0718450:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr5_1:12698570-12698589 | Msa0718450:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr5_1:12698709-12698728 | Msa0718450:intron | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr5_1:12698816-12698835 | None:intergenic | 35.0% |
| !! | TCTTCTTCGGCATTTGATTT+TGG | + | chr5_1:12696817-12696836 | None:intergenic | 35.0% |
| CGAAGAAGATAGTCATAACA+TGG | - | chr5_1:12696828-12696847 | Msa0718450:CDS | 35.0% | |
| AGAAGATAGTCATAACATGG+AGG | - | chr5_1:12696831-12696850 | Msa0718450:CDS | 35.0% | |
| TGTCGTTACTATCAACATGT+TGG | + | chr5_1:12697200-12697219 | None:intergenic | 35.0% | |
| AGTTGAACAGTTTGATCAAG+AGG | - | chr5_1:12697434-12697453 | Msa0718450:intron | 35.0% | |
| GTTGAACAGTTTGATCAAGA+GGG | - | chr5_1:12697435-12697454 | Msa0718450:intron | 35.0% | |
| ! | AAACATTGTAGCGACTTTTC+CGG | + | chr5_1:12697469-12697488 | None:intergenic | 35.0% |
| GCTACAATGTTTAGCAATGA+AGG | - | chr5_1:12697477-12697496 | Msa0718450:intron | 35.0% | |
| CTTTCTCTGATAGAGATTGT+TGG | - | chr5_1:12697505-12697524 | Msa0718450:intron | 35.0% | |
| AGATCTCCGATCTAAAAAAC+TGG | - | chr5_1:12697539-12697558 | Msa0718450:intron | 35.0% | |
| CGATCTAAAAAACTGGATGT+TGG | - | chr5_1:12697546-12697565 | Msa0718450:intron | 35.0% | |
| AATCCAGTAAATGGTGCAAA+TGG | + | chr5_1:12697767-12697786 | None:intergenic | 35.0% | |
| CAAAGCACAACCGAATAAAA+TGG | + | chr5_1:12697807-12697826 | None:intergenic | 35.0% | |
| ! | GTTGTTTGAAACTTGGCTAA+TGG | - | chr5_1:12697859-12697878 | Msa0718450:intron | 35.0% |
| CATAAACGATGTCGAGTATT+AGG | + | chr5_1:12697962-12697981 | None:intergenic | 35.0% | |
| GTATATGTGTGAAAGCTTCT+CGG | + | chr5_1:12698011-12698030 | None:intergenic | 35.0% | |
| GAAAAAAATGAATGGCTCCA+AGG | - | chr5_1:12698139-12698158 | Msa0718450:intron | 35.0% | |
| TGTATTCATCCCAGCAAAAA+AGG | + | chr5_1:12698212-12698231 | None:intergenic | 35.0% | |
| AGTAAAGTTTGACAAAGCAG+TGG | - | chr5_1:12698306-12698325 | Msa0718450:CDS | 35.0% | |
| TTTATGTGGACCTTGATACA+AGG | - | chr5_1:12698569-12698588 | Msa0718450:CDS | 35.0% | |
| TTATGTGGACCTTGATACAA+GGG | - | chr5_1:12698570-12698589 | Msa0718450:CDS | 35.0% | |
| TGGACAAAGGATGCTAATAT+TGG | - | chr5_1:12698709-12698728 | Msa0718450:intron | 35.0% | |
| ! | GGTCAGATAATAAACTTGCT+TGG | + | chr5_1:12698816-12698835 | None:intergenic | 35.0% |
| TCATAACATGGAGGACATAG+AGG | - | chr5_1:12696840-12696859 | Msa0718450:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr5_1:12697020-12697039 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr5_1:12697021-12697040 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr5_1:12697307-12697326 | Msa0718450:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr5_1:12697396-12697415 | Msa0718450:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr5_1:12697397-12697416 | Msa0718450:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr5_1:12697398-12697417 | Msa0718450:intron | 40.0% | |
| ! | ATGCCATTTGCACCATTTAC+TGG | - | chr5_1:12697761-12697780 | Msa0718450:intron | 40.0% |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr5_1:12697865-12697884 | Msa0718450:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr5_1:12697866-12697885 | Msa0718450:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr5_1:12697966-12697985 | Msa0718450:intron | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | - | chr5_1:12698102-12698121 | Msa0718450:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr5_1:12698471-12698490 | Msa0718450:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr5_1:12698483-12698502 | None:intergenic | 40.0% |
| TCATAACATGGAGGACATAG+AGG | - | chr5_1:12696840-12696859 | Msa0718450:CDS | 40.0% | |
| GAACATCTAAGTCATGCTCA+GGG | + | chr5_1:12697020-12697039 | None:intergenic | 40.0% | |
| TGAACATCTAAGTCATGCTC+AGG | + | chr5_1:12697021-12697040 | None:intergenic | 40.0% | |
| AAGCAAAAATGAGGCCCAAA+TGG | - | chr5_1:12697307-12697326 | Msa0718450:intron | 40.0% | |
| ! | AGGTGCCATAAAAAAATGGG+TGG | - | chr5_1:12697396-12697415 | Msa0718450:intron | 40.0% |
| ! | GGTGCCATAAAAAAATGGGT+GGG | - | chr5_1:12697397-12697416 | Msa0718450:intron | 40.0% |
| GTGCCATAAAAAAATGGGTG+GGG | - | chr5_1:12697398-12697417 | Msa0718450:intron | 40.0% | |
| ! | ATGCCATTTGCACCATTTAC+TGG | - | chr5_1:12697761-12697780 | Msa0718450:intron | 40.0% |
| TGAAACTTGGCTAATGGCAA+TGG | - | chr5_1:12697865-12697884 | Msa0718450:intron | 40.0% | |
| GAAACTTGGCTAATGGCAAT+GGG | - | chr5_1:12697866-12697885 | Msa0718450:intron | 40.0% | |
| CTCGACATCGTTTATGTTTG+TGG | - | chr5_1:12697966-12697985 | Msa0718450:intron | 40.0% | |
| GGAAGATTGGCACCAAATAA+TGG | - | chr5_1:12698102-12698121 | Msa0718450:intron | 40.0% | |
| ! | AAAGGTTAGCCACTTCATCA+AGG | - | chr5_1:12698471-12698490 | Msa0718450:CDS | 40.0% |
| ! | CGATTTTGTCCTTGATGAAG+TGG | + | chr5_1:12698483-12698502 | None:intergenic | 40.0% |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr5_1:12697404-12697423 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr5_1:12697465-12697484 | None:intergenic | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | - | chr5_1:12697917-12697936 | Msa0718450:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr5_1:12697931-12697950 | Msa0718450:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr5_1:12698218-12698237 | Msa0718450:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr5_1:12698290-12698309 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr5_1:12698582-12698601 | None:intergenic | 45.0% | |
| !!! | CTGCCCCACCCATTTTTTTA+TGG | + | chr5_1:12697404-12697423 | None:intergenic | 45.0% |
| ! | ATTGTAGCGACTTTTCCGGT+AGG | + | chr5_1:12697465-12697484 | None:intergenic | 45.0% |
| GATCAAGATAAGGCGATGTG+CGG | - | chr5_1:12697917-12697936 | Msa0718450:intron | 45.0% | |
| GATGTGCGGAGCAATATCTA+AGG | - | chr5_1:12697931-12697950 | Msa0718450:intron | 45.0% | |
| CTGGGATGAATACAACACAG+AGG | - | chr5_1:12698218-12698237 | Msa0718450:intron | 45.0% | |
| TACTACGAAATCTCGCAGTG+TGG | + | chr5_1:12698290-12698309 | None:intergenic | 45.0% | |
| ATTTGGCAGCCCTTGTATCA+AGG | + | chr5_1:12698582-12698601 | None:intergenic | 45.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr5_1:12697672-12697691 | Msa0718450:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr5_1:12697869-12697888 | Msa0718450:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr5_1:12698453-12698472 | Msa0718450:CDS | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr5_1:12698583-12698602 | Msa0718450:CDS | 50.0% | |
| !! | TTTGGGTTGATGCAAGGTCG+AGG | - | chr5_1:12697672-12697691 | Msa0718450:intron | 50.0% |
| ACTTGGCTAATGGCAATGGG+TGG | - | chr5_1:12697869-12697888 | Msa0718450:intron | 50.0% | |
| GTTTCAGGACGAGCTTGCAA+AGG | - | chr5_1:12698453-12698472 | Msa0718450:CDS | 50.0% | |
| GATACAAGGGCTGCCAAATG+TGG | - | chr5_1:12698583-12698602 | Msa0718450:CDS | 50.0% | |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr5_1:12697447-12697466 | Msa0718450:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr5_1:12697676-12697695 | Msa0718450:intron | 55.0% |
| GATCAAGAGGGCTTGCCTAC+CGG | - | chr5_1:12697447-12697466 | Msa0718450:intron | 55.0% | |
| ! | GGTTGATGCAAGGTCGAGGT+TGG | - | chr5_1:12697676-12697695 | Msa0718450:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 12696805 | 12698858 | 12696805 | ID=Msa0718450;Name=Msa0718450 |
| chr5_1 | mRNA | 12696805 | 12698858 | 12696805 | ID=Msa0718450-mRNA-1;Parent=Msa0718450;Name=Msa0718450-mRNA-1;_AED=0.22;_eAED=0.22;_QI=0|0|0|0.75|0.33|0.25|4|0|238 |
| chr5_1 | exon | 12698802 | 12698858 | 12698802 | ID=Msa0718450-mRNA-1:exon:5222;Parent=Msa0718450-mRNA-1 |
| chr5_1 | exon | 12698453 | 12698675 | 12698453 | ID=Msa0718450-mRNA-1:exon:5221;Parent=Msa0718450-mRNA-1 |
| chr5_1 | exon | 12698221 | 12698437 | 12698221 | ID=Msa0718450-mRNA-1:exon:5220;Parent=Msa0718450-mRNA-1 |
| chr5_1 | exon | 12696805 | 12697021 | 12696805 | ID=Msa0718450-mRNA-1:exon:5219;Parent=Msa0718450-mRNA-1 |
| chr5_1 | CDS | 12698802 | 12698858 | 12698802 | ID=Msa0718450-mRNA-1:cds;Parent=Msa0718450-mRNA-1 |
| chr5_1 | CDS | 12698453 | 12698675 | 12698453 | ID=Msa0718450-mRNA-1:cds;Parent=Msa0718450-mRNA-1 |
| chr5_1 | CDS | 12698221 | 12698437 | 12698221 | ID=Msa0718450-mRNA-1:cds;Parent=Msa0718450-mRNA-1 |
| chr5_1 | CDS | 12696805 | 12697021 | 12696805 | ID=Msa0718450-mRNA-1:cds;Parent=Msa0718450-mRNA-1 |
| Gene Sequence |
| Protein sequence |
