Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718870 | XP_039685680.1 | 84.105 | 799 | 107 | 3 | 1 | 779 | 1 | 799 | 0.0 | 1376 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718870 | sp|Q9SZL8|FRS5_ARATH | 27.358 | 636 | 392 | 13 | 32 | 665 | 70 | 637 | 1.27e-66 | 239 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718870 | D3YBB9 | 75.836 | 807 | 178 | 4 | 1 | 798 | 49 | 847 | 0.0 | 1280 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0718870 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718870 | MtrunA17_Chr3g0088371 | 83.696 | 184 | 27 | 1 | 618 | 798 | 1 | 184 | 3.51e-103 | 315 |
| Msa0718870 | MtrunA17_Chr2g0324011 | 30.660 | 636 | 363 | 13 | 36 | 665 | 8 | 571 | 6.72e-101 | 324 |
| Msa0718870 | MtrunA17_Chr3g0082121 | 31.838 | 691 | 383 | 19 | 41 | 727 | 49 | 655 | 2.67e-99 | 323 |
| Msa0718870 | MtrunA17_Chr1g0202341 | 29.449 | 635 | 367 | 17 | 34 | 662 | 50 | 609 | 3.52e-79 | 269 |
| Msa0718870 | MtrunA17_Chr8g0363841 | 28.730 | 630 | 374 | 15 | 40 | 665 | 22 | 580 | 3.19e-74 | 255 |
| Msa0718870 | MtrunA17_Chr1g0203721 | 25.900 | 722 | 435 | 15 | 40 | 739 | 68 | 711 | 2.74e-71 | 251 |
| Msa0718870 | MtrunA17_Chr2g0296781 | 27.541 | 679 | 406 | 20 | 39 | 708 | 1 | 602 | 2.43e-68 | 240 |
| Msa0718870 | MtrunA17_Chr5g0448761 | 25.071 | 706 | 450 | 14 | 32 | 728 | 57 | 692 | 4.22e-67 | 238 |
| Msa0718870 | MtrunA17_Chr6g0458391 | 27.057 | 632 | 354 | 14 | 41 | 662 | 231 | 765 | 1.41e-66 | 236 |
| Msa0718870 | MtrunA17_Chr6g0477261 | 29.032 | 527 | 316 | 14 | 180 | 699 | 7 | 482 | 1.01e-63 | 226 |
| Msa0718870 | MtrunA17_Chr1g0164591 | 35.000 | 320 | 193 | 4 | 131 | 448 | 1 | 307 | 1.36e-61 | 211 |
| Msa0718870 | MtrunA17_Chr2g0287651 | 25.990 | 631 | 383 | 15 | 39 | 662 | 79 | 632 | 4.22e-59 | 216 |
| Msa0718870 | MtrunA17_Chr5g0441581 | 24.636 | 755 | 465 | 21 | 32 | 773 | 26 | 689 | 4.47e-57 | 207 |
| Msa0718870 | MtrunA17_Chr5g0440451 | 24.470 | 707 | 429 | 18 | 34 | 721 | 42 | 662 | 5.91e-55 | 204 |
| Msa0718870 | MtrunA17_Chr1g0207551 | 25.496 | 706 | 414 | 22 | 31 | 718 | 30 | 641 | 2.88e-54 | 201 |
| Msa0718870 | MtrunA17_Chr1g0172971 | 80.342 | 117 | 22 | 1 | 1 | 116 | 1 | 117 | 3.44e-53 | 194 |
| Msa0718870 | MtrunA17_Chr2g0329031 | 25.466 | 644 | 384 | 17 | 23 | 658 | 2 | 557 | 6.98e-53 | 196 |
| Msa0718870 | MtrunA17_Chr3g0118611 | 27.833 | 503 | 303 | 11 | 221 | 719 | 111 | 557 | 1.30e-52 | 196 |
| Msa0718870 | MtrunA17_Chr1g0198761 | 26.646 | 653 | 381 | 20 | 26 | 660 | 38 | 610 | 3.89e-52 | 194 |
| Msa0718870 | MtrunA17_Chr1g0196541 | 25.159 | 628 | 394 | 17 | 39 | 662 | 1 | 556 | 6.81e-52 | 193 |
| Msa0718870 | MtrunA17_Chr7g0258861 | 34.641 | 306 | 176 | 6 | 36 | 336 | 8 | 294 | 2.52e-51 | 182 |
| Msa0718870 | MtrunA17_Chr3g0080351 | 23.862 | 725 | 448 | 15 | 34 | 752 | 75 | 701 | 1.66e-49 | 187 |
| Msa0718870 | MtrunA17_Chr2g0287061 | 24.365 | 669 | 375 | 20 | 41 | 694 | 189 | 741 | 1.47e-47 | 181 |
| Msa0718870 | MtrunA17_Chr1g0203051 | 22.881 | 590 | 386 | 9 | 50 | 637 | 94 | 616 | 4.38e-47 | 178 |
| Msa0718870 | MtrunA17_Chr2g0290391 | 25.741 | 641 | 373 | 19 | 39 | 660 | 55 | 611 | 1.01e-46 | 177 |
| Msa0718870 | MtrunA17_Chr2g0276841 | 25.984 | 635 | 374 | 21 | 49 | 669 | 84 | 636 | 2.59e-45 | 173 |
| Msa0718870 | MtrunA17_Chr5g0431001 | 27.938 | 451 | 280 | 12 | 40 | 473 | 66 | 488 | 7.35e-43 | 163 |
| Msa0718870 | MtrunA17_Chr5g0448511 | 25.442 | 452 | 283 | 9 | 216 | 665 | 1 | 400 | 2.35e-42 | 162 |
| Msa0718870 | MtrunA17_Chr2g0291581 | 23.211 | 629 | 398 | 14 | 38 | 662 | 74 | 621 | 1.85e-41 | 162 |
| Msa0718870 | MtrunA17_Chr2g0291591 | 25.703 | 498 | 316 | 13 | 16 | 499 | 44 | 501 | 5.21e-41 | 159 |
| Msa0718870 | MtrunA17_Chr6g0475591 | 90.411 | 73 | 7 | 0 | 188 | 260 | 1 | 73 | 4.13e-40 | 142 |
| Msa0718870 | MtrunA17_Chr2g0294841 | 28.105 | 459 | 283 | 14 | 41 | 482 | 51 | 479 | 1.48e-36 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718870 | AT4G38180.1 | 27.358 | 636 | 392 | 13 | 32 | 665 | 70 | 637 | 1.29e-67 | 239 |
| Msa0718870 | AT4G15090.1 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 9.13e-59 | 215 |
| Msa0718870 | AT4G15090.5 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 9.13e-59 | 215 |
| Msa0718870 | AT4G15090.3 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 9.13e-59 | 215 |
| Msa0718870 | AT4G15090.2 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 9.13e-59 | 215 |
| Msa0718870 | AT4G15090.4 | 25.444 | 676 | 417 | 15 | 50 | 718 | 66 | 661 | 9.13e-59 | 215 |
| Msa0718870 | AT2G27110.2 | 25.963 | 597 | 368 | 15 | 127 | 719 | 108 | 634 | 1.57e-52 | 197 |
| Msa0718870 | AT2G27110.1 | 25.963 | 597 | 368 | 15 | 127 | 719 | 108 | 634 | 1.57e-52 | 197 |
| Msa0718870 | AT2G27110.3 | 27.112 | 509 | 314 | 11 | 213 | 719 | 36 | 489 | 2.88e-52 | 194 |
| Msa0718870 | AT3G06250.2 | 25.118 | 633 | 351 | 17 | 34 | 661 | 189 | 703 | 1.33e-51 | 193 |
| Msa0718870 | AT3G06250.1 | 25.118 | 633 | 351 | 17 | 34 | 661 | 189 | 703 | 1.33e-51 | 193 |
| Msa0718870 | AT3G06250.3 | 25.118 | 633 | 351 | 17 | 34 | 661 | 189 | 703 | 1.33e-51 | 193 |
| Msa0718870 | AT1G76320.3 | 24.077 | 677 | 418 | 17 | 50 | 720 | 12 | 598 | 6.38e-49 | 184 |
| Msa0718870 | AT1G76320.2 | 24.225 | 677 | 417 | 17 | 50 | 720 | 12 | 598 | 1.65e-48 | 184 |
| Msa0718870 | AT1G76320.1 | 24.225 | 677 | 417 | 17 | 50 | 720 | 12 | 598 | 2.12e-48 | 183 |
| Msa0718870 | AT1G76320.4 | 24.225 | 677 | 417 | 17 | 50 | 720 | 12 | 598 | 2.12e-48 | 183 |
| Msa0718870 | AT3G22170.2 | 22.207 | 725 | 457 | 15 | 34 | 753 | 69 | 691 | 5.07e-47 | 180 |
| Msa0718870 | AT3G22170.1 | 22.207 | 725 | 457 | 15 | 34 | 753 | 69 | 691 | 5.07e-47 | 180 |
| Msa0718870 | AT5G18960.2 | 24.186 | 645 | 365 | 19 | 24 | 661 | 200 | 727 | 5.80e-46 | 177 |
| Msa0718870 | AT5G18960.1 | 24.186 | 645 | 365 | 19 | 24 | 661 | 200 | 727 | 5.80e-46 | 177 |
| Msa0718870 | AT4G38170.1 | 25.290 | 431 | 264 | 11 | 235 | 662 | 24 | 399 | 1.19e-43 | 166 |
| Msa0718870 | AT5G28530.1 | 24.570 | 639 | 385 | 19 | 40 | 660 | 60 | 619 | 1.23e-41 | 162 |
| Msa0718870 | AT1G10240.2 | 25.201 | 623 | 374 | 21 | 49 | 659 | 62 | 604 | 1.55e-41 | 162 |
| Msa0718870 | AT1G10240.1 | 25.201 | 623 | 374 | 21 | 49 | 659 | 62 | 604 | 1.55e-41 | 162 |
| Msa0718870 | AT5G28530.3 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 6.62e-41 | 160 |
| Msa0718870 | AT5G28530.2 | 24.413 | 639 | 382 | 20 | 40 | 660 | 60 | 615 | 6.62e-41 | 160 |
| Msa0718870 | AT2G32250.5 | 23.231 | 749 | 435 | 23 | 1 | 743 | 8 | 622 | 5.09e-40 | 159 |
| Msa0718870 | AT2G32250.6 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 1.06e-39 | 158 |
| Msa0718870 | AT2G32250.1 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 1.06e-39 | 158 |
| Msa0718870 | AT2G32250.3 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 1.06e-39 | 158 |
| Msa0718870 | AT2G32250.2 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 1.16e-39 | 157 |
| Msa0718870 | AT2G32250.4 | 23.097 | 749 | 436 | 22 | 1 | 743 | 8 | 622 | 1.16e-39 | 157 |
| Msa0718870 | AT2G32250.7 | 23.272 | 709 | 408 | 20 | 41 | 743 | 3 | 581 | 2.02e-39 | 157 |
| Msa0718870 | AT2G32250.8 | 23.272 | 709 | 408 | 20 | 41 | 743 | 3 | 581 | 2.24e-39 | 156 |
| Msa0718870 | AT1G80010.1 | 24.100 | 639 | 390 | 23 | 41 | 662 | 101 | 661 | 2.59e-36 | 147 |
| Msa0718870 | AT1G52520.1 | 23.381 | 633 | 389 | 20 | 41 | 662 | 91 | 638 | 3.18e-33 | 137 |
| Msa0718870 | AT4G19990.7 | 23.841 | 453 | 282 | 10 | 41 | 483 | 41 | 440 | 8.17e-28 | 120 |
| Msa0718870 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 591 | 721 | 509 | 629 | 2.21e-12 | 71.2 |
| Msa0718870 | AT4G19990.3 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 9.23e-28 | 120 |
| Msa0718870 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.11e-12 | 71.2 |
| Msa0718870 | AT4G19990.4 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 9.23e-28 | 120 |
| Msa0718870 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.11e-12 | 71.2 |
| Msa0718870 | AT4G19990.5 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 9.79e-28 | 120 |
| Msa0718870 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.28e-12 | 71.2 |
| Msa0718870 | AT4G19990.6 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 1.27e-27 | 120 |
| Msa0718870 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.06e-12 | 71.2 |
| Msa0718870 | AT4G19990.2 | 23.841 | 453 | 282 | 10 | 41 | 483 | 27 | 426 | 1.27e-27 | 120 |
| Msa0718870 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 591 | 721 | 495 | 615 | 2.06e-12 | 71.2 |
| Msa0718870 | AT4G19990.1 | 28.358 | 268 | 185 | 3 | 219 | 483 | 106 | 369 | 2.50e-27 | 119 |
| Msa0718870 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 591 | 721 | 438 | 558 | 1.94e-12 | 71.2 |
| Msa0718870 | AT5G28530.4 | 22.258 | 629 | 349 | 22 | 40 | 660 | 60 | 556 | 1.45e-22 | 103 |
Find 122 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGTCGCTTCTTTGACTTAAT+TGG | 0.149305 | 5_1:+13256798 | None:intergenic |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5_1:-13257933 | Msa0718870:CDS |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5_1:-13257666 | Msa0718870:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5_1:-13258721 | Msa0718870:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5_1:-13258214 | Msa0718870:intron |
| CATCGTAAGAATGTGTTATT+TGG | 0.207871 | 5_1:-13258181 | Msa0718870:CDS |
| TTCTTTGACTTAATTGGATT+TGG | 0.266522 | 5_1:+13256804 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5_1:-13257892 | Msa0718870:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5_1:-13256952 | Msa0718870:CDS |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5_1:+13258069 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_1:+13258671 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 5_1:-13256555 | Msa0718870:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 5_1:+13256736 | None:intergenic |
| GAGGGATAATCATGCTGATT+TGG | 0.346844 | 5_1:-13257633 | Msa0718870:CDS |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5_1:-13257369 | Msa0718870:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.365071 | 5_1:+13259201 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5_1:-13257792 | Msa0718870:CDS |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5_1:-13256960 | Msa0718870:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_1:-13258664 | Msa0718870:intron |
| TCATGCTGATTTGGACTTCA+AGG | 0.389304 | 5_1:-13257624 | Msa0718870:CDS |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_1:-13258672 | Msa0718870:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 5_1:-13259584 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5_1:-13257793 | Msa0718870:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 5_1:+13257076 | None:intergenic |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_1:+13256822 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5_1:-13257492 | Msa0718870:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5_1:-13256927 | Msa0718870:CDS |
| CCATGATTCTTTATCACTAA+AGG | 0.406174 | 5_1:+13259440 | None:intergenic |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5_1:-13259430 | Msa0718870:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5_1:-13257244 | Msa0718870:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5_1:+13257321 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.417808 | 5_1:-13259359 | Msa0718870:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5_1:+13257320 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_1:-13259024 | Msa0718870:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_1:-13259142 | Msa0718870:CDS |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5_1:-13259110 | Msa0718870:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5_1:+13258076 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_1:-13259159 | Msa0718870:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5_1:+13257143 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5_1:-13259276 | Msa0718870:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_1:-13258994 | Msa0718870:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5_1:-13259505 | Msa0718870:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5_1:-13258002 | Msa0718870:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5_1:-13257838 | Msa0718870:CDS |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5_1:-13257243 | Msa0718870:CDS |
| AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 5_1:-13256574 | Msa0718870:three_prime_UTR |
| ACAAAATAAGAAATCTGATA+AGG | 0.474392 | 5_1:-13259310 | Msa0718870:CDS |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 5_1:-13257286 | Msa0718870:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5_1:+13257490 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_1:+13259165 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5_1:-13259372 | Msa0718870:CDS |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5_1:-13256851 | Msa0718870:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 5_1:-13258881 | Msa0718870:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5_1:-13257476 | Msa0718870:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5_1:+13258201 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5_1:-13257891 | Msa0718870:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_1:-13258868 | Msa0718870:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5_1:-13257652 | Msa0718870:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5_1:+13257572 | None:intergenic |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5_1:+13258776 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5_1:-13256852 | Msa0718870:CDS |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5_1:-13257805 | Msa0718870:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5_1:-13257307 | Msa0718870:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5_1:+13258910 | None:intergenic |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5_1:-13257787 | Msa0718870:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5_1:+13257327 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_1:+13257684 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5_1:-13259106 | Msa0718870:CDS |
| AAATGCTCTGCTTTATGTAA+TGG | 0.525118 | 5_1:+13259066 | None:intergenic |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5_1:-13257306 | Msa0718870:CDS |
| GAGGCTTTAACAAATTAAGC+AGG | 0.527180 | 5_1:-13256702 | Msa0718870:exon |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5_1:+13257495 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 5_1:-13256746 | Msa0718870:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5_1:-13259265 | Msa0718870:CDS |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 5_1:-13257287 | Msa0718870:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_1:+13257689 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5_1:-13257475 | Msa0718870:CDS |
| CCTTTAGTGATAAAGAATCA+TGG | 0.543522 | 5_1:-13259440 | Msa0718870:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_1:-13259264 | Msa0718870:CDS |
| GAGAACATCTTATGAAGTGA+TGG | 0.551307 | 5_1:-13258962 | Msa0718870:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5_1:+13258056 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 5_1:-13257086 | Msa0718870:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_1:-13258814 | Msa0718870:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5_1:-13259481 | Msa0718870:CDS |
| GGGTGAAGGTGTTGGAGGCA+CGG | 0.565649 | 5_1:-13258941 | Msa0718870:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5_1:-13257000 | Msa0718870:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5_1:+13257571 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5_1:+13256840 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 5_1:-13256721 | Msa0718870:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5_1:+13257550 | None:intergenic |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5_1:-13256959 | Msa0718870:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5_1:-13258070 | Msa0718870:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5_1:-13256964 | Msa0718870:CDS |
| ATAAGTTAGGAAAGATGATG+AGG | 0.591839 | 5_1:-13256659 | Msa0718870:three_prime_UTR |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5_1:+13256884 | None:intergenic |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 5_1:-13257337 | Msa0718870:CDS |
| TTGATATCGTTGTGCTTCAG+TGG | 0.601464 | 5_1:+13257052 | None:intergenic |
| GAAGTGATGGGTGAAGGTGT+TGG | 0.603704 | 5_1:-13258949 | Msa0718870:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 5_1:-13258875 | Msa0718870:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5_1:-13256997 | Msa0718870:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5_1:-13257574 | Msa0718870:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5_1:-13257489 | Msa0718870:CDS |
| AGAACTGGATTGTCACATGT+TGG | 0.608197 | 5_1:+13259216 | None:intergenic |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 5_1:-13258872 | Msa0718870:CDS |
| ATATCAACTTCATCTGAGAG+TGG | 0.614980 | 5_1:-13259516 | Msa0718870:CDS |
| GTGATGGGTGAAGGTGTTGG+AGG | 0.621481 | 5_1:-13258946 | Msa0718870:CDS |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5_1:+13257836 | None:intergenic |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5_1:+13257322 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5_1:-13258001 | Msa0718870:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 5_1:+13257079 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.643044 | 5_1:-13258961 | Msa0718870:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_1:-13257651 | Msa0718870:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5_1:-13259107 | Msa0718870:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5_1:+13257101 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5_1:+13257530 | None:intergenic |
| TCTTATGAAGTGATGGGTGA+AGG | 0.656961 | 5_1:-13258955 | Msa0718870:CDS |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5_1:-13256975 | Msa0718870:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5_1:+13257225 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 5_1:-13258074 | Msa0718870:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5_1:-13257242 | Msa0718870:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5_1:-13257391 | Msa0718870:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5_1:-13257390 | Msa0718870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr5_1:13259453-13259472 | Msa0718870:CDS | 15.0% |
| !! | TTTAATTATGCATATAACAC+TGG | - | chr5_1:13256753-13256772 | Msa0718870:CDS | 20.0% |
| !!! | CTTATTTTGTGAATTGTTAT+TGG | + | chr5_1:13256805-13256824 | None:intergenic | 20.0% |
| !! | ACAAAATAAGAAATCTGATA+AGG | - | chr5_1:13256815-13256834 | Msa0718870:CDS | 20.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr5_1:13257015-13257034 | Msa0718870:CDS | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr5_1:13257608-13257627 | Msa0718870:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5_1:13257636-13257655 | Msa0718870:CDS | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr5_1:13256644-13256663 | Msa0718870:three_prime_UTR | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr5_1:13257018-13257037 | Msa0718870:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr5_1:13257019-13257038 | Msa0718870:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5_1:13257131-13257150 | Msa0718870:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5_1:13257366-13257385 | Msa0718870:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5_1:13257367-13257386 | Msa0718870:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr5_1:13257453-13257472 | Msa0718870:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5_1:13257479-13257498 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5_1:13257526-13257545 | Msa0718870:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5_1:13257628-13257647 | Msa0718870:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5_1:13257635-13257654 | Msa0718870:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5_1:13257888-13257907 | Msa0718870:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr5_1:13258100-13258119 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr5_1:13258192-13258211 | Msa0718870:CDS | 25.0% |
| !!! | ATGATGAAAAACTGTTTTGA+TGG | - | chr5_1:13258262-13258281 | Msa0718870:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr5_1:13258459-13258478 | Msa0718870:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr5_1:13258598-13258617 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr5_1:13258633-13258652 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr5_1:13258633-13258652 | Msa0718870:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr5_1:13258734-13258753 | Msa0718870:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr5_1:13258735-13258754 | Msa0718870:CDS | 25.0% |
| !! | TTCTTTGACTTAATTGGATT+TGG | + | chr5_1:13259324-13259343 | None:intergenic | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | chr5_1:13259551-13259570 | Msa0718870:five_prime_UTR | 25.0% |
| CCATGATTCTTTATCACTAA+AGG | + | chr5_1:13256688-13256707 | None:intergenic | 30.0% | |
| CCTTTAGTGATAAAGAATCA+TGG | - | chr5_1:13256685-13256704 | Msa0718870:three_prime_UTR | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr5_1:13256695-13256714 | Msa0718870:exon | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5_1:13256860-13256879 | Msa0718870:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5_1:13256861-13256880 | Msa0718870:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5_1:13256950-13256969 | Msa0718870:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5_1:13256983-13257002 | Msa0718870:CDS | 30.0% |
| AAATGCTCTGCTTTATGTAA+TGG | + | chr5_1:13257062-13257081 | None:intergenic | 30.0% | |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5_1:13257164-13257183 | Msa0718870:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5_1:13257208-13257227 | Msa0718870:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5_1:13257218-13257237 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5_1:13257332-13257351 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr5_1:13257404-13257423 | Msa0718870:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5_1:13257457-13257476 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5_1:13257461-13257480 | Msa0718870:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5_1:13257540-13257559 | Msa0718870:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5_1:13257565-13257584 | Msa0718870:CDS | 30.0% | |
| !! | CAAAAATTCTAAGGCAAGAT+AGG | + | chr5_1:13257666-13257685 | None:intergenic | 30.0% |
| TGTACAGAGCAAAAATTCTA+AGG | + | chr5_1:13257675-13257694 | None:intergenic | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr5_1:13257699-13257718 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr5_1:13257847-13257866 | Msa0718870:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5_1:13257927-13257946 | None:intergenic | 30.0% | |
| ! | CATCGTAAGAATGTGTTATT+TGG | - | chr5_1:13257944-13257963 | Msa0718870:CDS | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr5_1:13258091-13258110 | Msa0718870:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr5_1:13258103-13258122 | Msa0718870:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr5_1:13258148-13258167 | Msa0718870:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr5_1:13258233-13258252 | Msa0718870:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr5_1:13258234-13258253 | Msa0718870:intron | 30.0% | |
| !!! | TGAAAAACTGTTTTGATGGA+AGG | - | chr5_1:13258266-13258285 | Msa0718870:intron | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr5_1:13258444-13258463 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr5_1:13258578-13258597 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr5_1:13258638-13258657 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr5_1:13258636-13258655 | Msa0718870:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5_1:13258693-13258712 | Msa0718870:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr5_1:13258806-13258825 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr5_1:13258807-13258826 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr5_1:13258818-13258837 | Msa0718870:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr5_1:13258819-13258838 | Msa0718870:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr5_1:13258915-13258934 | Msa0718870:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5_1:13258918-13258937 | Msa0718870:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5_1:13258983-13259002 | Msa0718870:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr5_1:13259150-13259169 | Msa0718870:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr5_1:13259198-13259217 | Msa0718870:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5_1:13259306-13259325 | None:intergenic | 30.0% |
| ATAAGTTAGGAAAGATGATG+AGG | - | chr5_1:13259466-13259485 | Msa0718870:CDS | 30.0% | |
| ! | TGAGGCTTTAACTAAAAAAG+CGG | - | chr5_1:13259484-13259503 | Msa0718870:CDS | 30.0% |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr5_1:13256581-13256600 | Msa0718870:three_prime_UTR | 35.0% |
| ATATCAACTTCATCTGAGAG+TGG | - | chr5_1:13256609-13256628 | Msa0718870:three_prime_UTR | 35.0% | |
| ATAACACTGGATTCTCTGTT+AGG | - | chr5_1:13256766-13256785 | Msa0718870:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5_1:13256849-13256868 | Msa0718870:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5_1:13256886-13256905 | Msa0718870:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5_1:13256927-13256946 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5_1:13256944-13256963 | Msa0718870:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5_1:13256949-13256968 | Msa0718870:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5_1:13257101-13257120 | Msa0718870:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5_1:13257163-13257182 | Msa0718870:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5_1:13257546-13257565 | Msa0718870:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr5_1:13257987-13258006 | Msa0718870:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr5_1:13258116-13258135 | Msa0718870:CDS | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr5_1:13258320-13258339 | Msa0718870:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr5_1:13258333-13258352 | Msa0718870:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr5_1:13258403-13258422 | Msa0718870:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr5_1:13258473-13258492 | Msa0718870:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr5_1:13258474-13258493 | Msa0718870:intron | 35.0% | |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr5_1:13258756-13258775 | Msa0718870:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr5_1:13258808-13258827 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5_1:13258925-13258944 | Msa0718870:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr5_1:13258985-13259004 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5_1:13258986-13259005 | Msa0718870:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr5_1:13259252-13259271 | None:intergenic | 35.0% |
| ! | AGTCGCTTCTTTGACTTAAT+TGG | + | chr5_1:13259330-13259349 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr5_1:13259379-13259398 | Msa0718870:CDS | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr5_1:13259404-13259423 | Msa0718870:CDS | 35.0% | |
| ! | GAGGCTTTAACAAATTAAGC+AGG | - | chr5_1:13259423-13259442 | Msa0718870:CDS | 35.0% |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr5_1:13256620-13256639 | Msa0718870:three_prime_UTR | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5_1:13256900-13256919 | None:intergenic | 40.0% |
| AGAACTGGATTGTCACATGT+TGG | + | chr5_1:13256912-13256931 | None:intergenic | 40.0% | |
| !! | TCTTATGAAGTGATGGGTGA+AGG | - | chr5_1:13257170-13257189 | Msa0718870:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | - | chr5_1:13257244-13257263 | Msa0718870:CDS | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5_1:13257374-13257393 | Msa0718870:CDS | 40.0% |
| ! | ATTTTTGCTCTGTACAGCCA+TGG | - | chr5_1:13257679-13257698 | Msa0718870:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5_1:13257793-13257812 | Msa0718870:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5_1:13257797-13257816 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr5_1:13257911-13257930 | Msa0718870:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr5_1:13258052-13258071 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr5_1:13258051-13258070 | Msa0718870:CDS | 40.0% | |
| ! | TTTTGATGGAAGGCCTACTT+CGG | - | chr5_1:13258276-13258295 | Msa0718870:intron | 40.0% |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr5_1:13258332-13258351 | Msa0718870:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr5_1:13258439-13258458 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr5_1:13258492-13258511 | Msa0718870:intron | 40.0% |
| !! | TCATGCTGATTTGGACTTCA+AGG | - | chr5_1:13258501-13258520 | Msa0718870:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr5_1:13258649-13258668 | Msa0718870:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr5_1:13258650-13258669 | Msa0718870:intron | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr5_1:13258772-13258791 | Msa0718870:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr5_1:13258881-13258900 | Msa0718870:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr5_1:13258882-13258901 | Msa0718870:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5_1:13258928-13258947 | Msa0718870:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr5_1:13259027-13259046 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr5_1:13259039-13259058 | Msa0718870:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr5_1:13259049-13259068 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr5_1:13259052-13259071 | None:intergenic | 40.0% | |
| TTGATATCGTTGTGCTTCAG+TGG | + | chr5_1:13259076-13259095 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr5_1:13259161-13259180 | Msa0718870:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr5_1:13259244-13259263 | None:intergenic | 40.0% |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr5_1:13259392-13259411 | None:intergenic | 40.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5_1:13256954-13256973 | Msa0718870:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5_1:13256963-13256982 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5_1:13256966-13256985 | Msa0718870:CDS | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5_1:13257311-13257330 | Msa0718870:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr5_1:13257352-13257371 | None:intergenic | 45.0% | |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr5_1:13258292-13258311 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr5_1:13258338-13258357 | Msa0718870:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr5_1:13258355-13258374 | Msa0718870:intron | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr5_1:13258551-13258570 | Msa0718870:intron | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr5_1:13258788-13258807 | Msa0718870:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr5_1:13258801-13258820 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr5_1:13258883-13258902 | Msa0718870:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr5_1:13258903-13258922 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr5_1:13259173-13259192 | Msa0718870:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr5_1:13259274-13259293 | Msa0718870:CDS | 45.0% | |
| !! | GAAGTGATGGGTGAAGGTGT+TGG | - | chr5_1:13257176-13257195 | Msa0718870:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | - | chr5_1:13257250-13257269 | Msa0718870:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr5_1:13257253-13257272 | Msa0718870:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr5_1:13258055-13258074 | Msa0718870:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr5_1:13258059-13258078 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr5_1:13258123-13258142 | Msa0718870:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr5_1:13258124-13258143 | Msa0718870:CDS | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr5_1:13258287-13258306 | Msa0718870:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr5_1:13258556-13258575 | None:intergenic | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr5_1:13258838-13258857 | Msa0718870:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr5_1:13258839-13258858 | Msa0718870:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr5_1:13259125-13259144 | Msa0718870:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr5_1:13259166-13259185 | Msa0718870:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr5_1:13259273-13259292 | Msa0718870:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr5_1:13259288-13259307 | None:intergenic | 50.0% |
| !! | GTGATGGGTGAAGGTGTTGG+AGG | - | chr5_1:13257179-13257198 | Msa0718870:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5_1:13257257-13257276 | Msa0718870:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr5_1:13258072-13258091 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr5_1:13258557-13258576 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr5_1:13259165-13259184 | Msa0718870:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr5_1:13259179-13259198 | Msa0718870:CDS | 55.0% | |
| !! | GGGTGAAGGTGTTGGAGGCA+CGG | - | chr5_1:13257184-13257203 | Msa0718870:CDS | 60.0% |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr5_1:13259128-13259147 | Msa0718870:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 13256555 | 13259592 | 13256555 | ID=Msa0718870;Name=Msa0718870 |
| chr5_1 | mRNA | 13256555 | 13259592 | 13256555 | ID=Msa0718870-mRNA-1;Parent=Msa0718870;Name=Msa0718870-mRNA-1;_AED=0.00;_eAED=0.00;_QI=45|1|1|1|1|1|2|152|800 |
| chr5_1 | exon | 13256555 | 13258226 | 13256555 | ID=Msa0718870-mRNA-1:exon:5422;Parent=Msa0718870-mRNA-1 |
| chr5_1 | exon | 13258665 | 13259592 | 13258665 | ID=Msa0718870-mRNA-1:exon:5421;Parent=Msa0718870-mRNA-1 |
| chr5_1 | five_prime_UTR | 13259548 | 13259592 | 13259548 | ID=Msa0718870-mRNA-1:five_prime_utr;Parent=Msa0718870-mRNA-1 |
| chr5_1 | CDS | 13258665 | 13259547 | 13258665 | ID=Msa0718870-mRNA-1:cds;Parent=Msa0718870-mRNA-1 |
| chr5_1 | CDS | 13256707 | 13258226 | 13256707 | ID=Msa0718870-mRNA-1:cds;Parent=Msa0718870-mRNA-1 |
| chr5_1 | three_prime_UTR | 13256555 | 13256706 | 13256555 | ID=Msa0718870-mRNA-1:three_prime_utr;Parent=Msa0718870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
