Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718980 | KEH27658.1 | 96.311 | 515 | 15 | 1 | 1 | 511 | 1 | 515 | 0.0 | 1032 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718980 | sp|Q9FH80|BAM8_ARATH | 64.340 | 530 | 149 | 6 | 13 | 504 | 18 | 545 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718980 | A0A072UEX1 | 96.311 | 515 | 15 | 1 | 1 | 511 | 1 | 515 | 0.0 | 1032 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0718980 | TF | BES1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718980 | MtrunA17_Chr5g0408851 | 98.004 | 501 | 6 | 1 | 1 | 497 | 1 | 501 | 0.0 | 1025 |
| Msa0718980 | MtrunA17_Chr7g0247631 | 52.818 | 479 | 201 | 6 | 41 | 497 | 73 | 548 | 4.04e-165 | 484 |
| Msa0718980 | MtrunA17_Chr4g0023601 | 47.018 | 285 | 150 | 1 | 213 | 497 | 12 | 295 | 4.10e-96 | 300 |
| Msa0718980 | MtrunA17_Chr2g0323051 | 46.263 | 281 | 150 | 1 | 213 | 493 | 85 | 364 | 2.87e-91 | 290 |
| Msa0718980 | MtrunA17_Chr5g0399991 | 40.308 | 325 | 188 | 5 | 185 | 504 | 59 | 382 | 6.08e-80 | 259 |
| Msa0718980 | MtrunA17_Chr4g0055281 | 41.945 | 329 | 183 | 6 | 182 | 504 | 45 | 371 | 6.93e-80 | 259 |
| Msa0718980 | MtrunA17_Chr5g0400001 | 41.558 | 308 | 174 | 5 | 201 | 504 | 75 | 380 | 3.95e-79 | 257 |
| Msa0718980 | MtrunA17_Chr6g0481031 | 40.878 | 296 | 169 | 5 | 214 | 504 | 106 | 400 | 9.25e-76 | 249 |
| Msa0718980 | MtrunA17_Chr8g0388651 | 38.112 | 286 | 170 | 5 | 215 | 495 | 80 | 363 | 2.43e-55 | 194 |
| Msa0718980 | MtrunA17_Chr2g0286431 | 36.140 | 285 | 173 | 5 | 214 | 495 | 83 | 361 | 6.68e-55 | 192 |
| Msa0718980 | MtrunA17_Chr1g0154651 | 52.703 | 74 | 30 | 2 | 50 | 118 | 14 | 87 | 1.11e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0718980 | AT5G45300.3 | 64.340 | 530 | 149 | 6 | 13 | 504 | 32 | 559 | 0.0 | 654 |
| Msa0718980 | AT5G45300.1 | 64.340 | 530 | 149 | 6 | 13 | 504 | 18 | 545 | 0.0 | 654 |
| Msa0718980 | AT5G45300.2 | 64.340 | 530 | 147 | 7 | 13 | 504 | 18 | 543 | 0.0 | 650 |
| Msa0718980 | AT2G45880.1 | 52.110 | 474 | 209 | 6 | 41 | 497 | 59 | 531 | 1.01e-166 | 488 |
| Msa0718980 | AT4G00490.1 | 60.458 | 306 | 121 | 0 | 192 | 497 | 73 | 378 | 1.60e-138 | 411 |
| Msa0718980 | AT4G15210.2 | 45.390 | 282 | 152 | 2 | 213 | 493 | 13 | 293 | 2.25e-89 | 280 |
| Msa0718980 | AT4G15210.1 | 45.390 | 282 | 152 | 2 | 213 | 493 | 13 | 293 | 8.95e-89 | 281 |
| Msa0718980 | AT2G32290.1 | 47.241 | 290 | 151 | 2 | 207 | 495 | 71 | 359 | 1.30e-88 | 283 |
| Msa0718980 | AT4G17090.1 | 43.051 | 295 | 163 | 4 | 214 | 504 | 86 | 379 | 3.89e-81 | 263 |
| Msa0718980 | AT3G23920.1 | 42.230 | 296 | 165 | 5 | 214 | 504 | 106 | 400 | 1.19e-78 | 257 |
| Msa0718980 | AT4G15210.3 | 46.058 | 241 | 129 | 1 | 253 | 493 | 1 | 240 | 8.19e-77 | 249 |
| Msa0718980 | AT4G15210.4 | 46.058 | 241 | 129 | 1 | 253 | 493 | 1 | 240 | 8.19e-77 | 249 |
| Msa0718980 | AT5G55700.1 | 35.083 | 362 | 214 | 10 | 130 | 484 | 21 | 368 | 1.28e-58 | 203 |
| Msa0718980 | AT5G18670.1 | 36.299 | 281 | 170 | 4 | 214 | 493 | 87 | 359 | 4.28e-51 | 183 |
| Msa0718980 | AT5G55700.2 | 44.253 | 174 | 93 | 4 | 314 | 484 | 33 | 205 | 1.50e-38 | 145 |
Find 149 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTATAACTGTGACTAAATT+TGG | 0.083534 | 5_1:+13464327 | Msa0718980:CDS |
| TCCTGGTATTGGTGAGTTTC+AGG | 0.176787 | 5_1:+13463876 | Msa0718980:CDS |
| GGCTTCGCCGCCACGGCGGC+GGG | 0.187111 | 5_1:+13460557 | Msa0718980:CDS |
| AACAACACCATCAATATTTA+AGG | 0.189592 | 5_1:-13462618 | None:intergenic |
| CAATATTTAAGGACTTAATA+TGG | 0.231011 | 5_1:-13462607 | None:intergenic |
| CTTATGCAAGATATTCATTC+TGG | 0.237659 | 5_1:+13462289 | Msa0718980:CDS |
| ACCCAGACCACACATATTTC+TGG | 0.247785 | 5_1:-13462679 | None:intergenic |
| TTCCCTCCCACAATGGGTTT+TGG | 0.258466 | 5_1:+13463318 | Msa0718980:CDS |
| CGGCTTCGCCGCCACGGCGG+CGG | 0.267102 | 5_1:+13460556 | Msa0718980:CDS |
| TAGTAAATGCCTCATATTAA+AGG | 0.268337 | 5_1:-13464424 | None:intergenic |
| GGCGAAGCCGCGTAGGCGGC+GGG | 0.280396 | 5_1:-13460543 | None:intergenic |
| AGGCGGCGGGGTTGTGGTTG+GGG | 0.281050 | 5_1:-13460530 | None:intergenic |
| AATATGTGTGGTCTGGGTAT+AGG | 0.294983 | 5_1:+13462684 | Msa0718980:CDS |
| GGTGATTATGACAACTATTA+TGG | 0.299107 | 5_1:+13464159 | Msa0718980:CDS |
| TCAAATTCTGAAGGTTGTTA+TGG | 0.309425 | 5_1:+13463252 | Msa0718980:intron |
| TAGGCGGCGGGGTTGTGGTT+GGG | 0.320831 | 5_1:-13460531 | None:intergenic |
| GAAATTGGTCTGGGAGCATC+TGG | 0.323125 | 5_1:+13463808 | Msa0718980:CDS |
| CGGCGAAGCCGCGTAGGCGG+CGG | 0.325121 | 5_1:-13460544 | None:intergenic |
| ATTAAGTCCTTAAATATTGA+TGG | 0.349118 | 5_1:+13462611 | Msa0718980:CDS |
| TTTGAGAACTTGTTCGGTTA+AGG | 0.350304 | 5_1:+13461715 | Msa0718980:CDS |
| AAGCAGTCAGTTGAATTGAT+TGG | 0.355108 | 5_1:-13461857 | None:intergenic |
| CCGCGTAGGCGGCGGGGTTG+TGG | 0.358579 | 5_1:-13460536 | None:intergenic |
| ATATGTGTGGTCTGGGTATA+GGG | 0.362560 | 5_1:+13462685 | Msa0718980:CDS |
| GAAATACTGAATGCCTATCT+TGG | 0.365514 | 5_1:+13463392 | Msa0718980:CDS |
| CGGAGCTGTGGTCGCTTTGT+GGG | 0.367932 | 5_1:-13460499 | None:intergenic |
| TTGCATTCATAATTGATAGA+TGG | 0.368566 | 5_1:+13464376 | Msa0718980:three_prime_UTR |
| TGTTGTTGTGGATTGTTGGT+GGG | 0.375591 | 5_1:+13462634 | Msa0718980:CDS |
| CTGCATGGTCTACTAAAGTC+TGG | 0.377028 | 5_1:-13464206 | None:intergenic |
| TCGGAGCTGTGGTCGCTTTG+TGG | 0.379351 | 5_1:-13460500 | None:intergenic |
| TTGTAGTGCCCAGCATTATC+AGG | 0.379757 | 5_1:-13464099 | None:intergenic |
| TGACTGCTTGGAGGCTGATC+AGG | 0.381765 | 5_1:+13461871 | Msa0718980:CDS |
| ATGGTGTTGTTGTGGATTGT+TGG | 0.383484 | 5_1:+13462630 | Msa0718980:CDS |
| AGCTCCTGCCTAATGCCTTC+AGG | 0.384829 | 5_1:-13462581 | None:intergenic |
| AAAAGAGTGACCGCGTAGTT+TGG | 0.391155 | 5_1:-13464064 | None:intergenic |
| GCTGCTCTCGCGCGTGAGGC+TGG | 0.391624 | 5_1:+13460743 | Msa0718980:CDS |
| TTGATATGATGAGAAGCTTT+CGG | 0.394412 | 5_1:+13463740 | Msa0718980:CDS |
| TCCCAGAAATATGTGTGGTC+TGG | 0.396705 | 5_1:+13462677 | Msa0718980:CDS |
| ATGATTGATGCTGTAGAAAT+TGG | 0.397538 | 5_1:+13463793 | Msa0718980:CDS |
| AGCAGTCAGTTGAATTGATT+GGG | 0.398837 | 5_1:-13461856 | None:intergenic |
| TGTTGGTGGGGCATTGTTGA+AGG | 0.399748 | 5_1:+13462647 | Msa0718980:CDS |
| GTGTTGTTGTGGATTGTTGG+TGG | 0.402184 | 5_1:+13462633 | Msa0718980:CDS |
| CGAGTTCTCAAAGGAAGAAC+TGG | 0.402924 | 5_1:+13463430 | Msa0718980:CDS |
| CTCTCGCGCGTGAGGCTGGT+TGG | 0.404707 | 5_1:+13460747 | Msa0718980:CDS |
| ATTAGCATTTATTCTATGAA+TGG | 0.407286 | 5_1:-13464469 | None:intergenic |
| AAATACTGAATGCCTATCTT+GGG | 0.426849 | 5_1:+13463393 | Msa0718980:CDS |
| CTTTGTCAATTCCCCAAGAT+AGG | 0.429608 | 5_1:-13463405 | None:intergenic |
| TGATGGATCCTGAAGGCATT+AGG | 0.431606 | 5_1:+13462573 | Msa0718980:CDS |
| GTTGTTGTGGATTGTTGGTG+GGG | 0.431988 | 5_1:+13462635 | Msa0718980:CDS |
| TTTATGTAAACAGGAACATA+TGG | 0.433574 | 5_1:-13462340 | None:intergenic |
| CCCAGACCACACATATTTCT+GGG | 0.437815 | 5_1:-13462678 | None:intergenic |
| GGTGGGGCATTGTTGAAGGC+TGG | 0.439216 | 5_1:+13462651 | Msa0718980:CDS |
| ATTCATAGAATAAATGCTAA+TGG | 0.439829 | 5_1:+13464471 | Msa0718980:three_prime_UTR |
| GGGACAAATTCCACCGGAAA+AGG | 0.442955 | 5_1:+13460578 | Msa0718980:CDS |
| AGTAAATGCCTCATATTAAA+GGG | 0.443955 | 5_1:-13464423 | None:intergenic |
| TGCCTTCAGGATCCATCAAC+TGG | 0.446486 | 5_1:-13462568 | None:intergenic |
| GTAGGCGGCGGGGTTGTGGT+TGG | 0.449462 | 5_1:-13460532 | None:intergenic |
| AAAAGAGCGAGAGAAAGAAA+AGG | 0.450160 | 5_1:+13460604 | Msa0718980:CDS |
| CCCAGAAATATGTGTGGTCT+GGG | 0.451457 | 5_1:+13462678 | Msa0718980:CDS |
| CAATCATACCTTCTGCAAAC+AGG | 0.452909 | 5_1:-13463777 | None:intergenic |
| AACTCTATGCCACATGAGAC+TGG | 0.453839 | 5_1:+13464120 | Msa0718980:CDS |
| CCGTGGCGGCGAAGCCGCGT+AGG | 0.454530 | 5_1:-13460550 | None:intergenic |
| AATCAATTCAACTGACTGCT+TGG | 0.457237 | 5_1:+13461859 | Msa0718980:CDS |
| TTGTGGTTGGGGTAAGTAAT+CGG | 0.458554 | 5_1:-13460519 | None:intergenic |
| GCATACCAAACTGACTCTAT+AGG | 0.461492 | 5_1:-13464401 | None:intergenic |
| TGGTACTTTGAGAACTTGTT+CGG | 0.461516 | 5_1:+13461709 | Msa0718980:CDS |
| AGGATGGGGTGGAGGTATCC+TGG | 0.464484 | 5_1:+13463859 | Msa0718980:CDS |
| GCTTCGCCGCCACGGCGGCG+GGG | 0.466898 | 5_1:+13460558 | Msa0718980:CDS |
| CCACCCCATCCTTTCTGAAA+AGG | 0.469410 | 5_1:-13463848 | None:intergenic |
| AGAATTCAAGCTGAATATAC+AGG | 0.471133 | 5_1:+13462727 | Msa0718980:CDS |
| TTGGTATGCCCTTTAATATG+AGG | 0.475653 | 5_1:+13464415 | Msa0718980:three_prime_UTR |
| AAAAGGAACGAACGAAGCTA+AGG | 0.476064 | 5_1:+13460621 | Msa0718980:CDS |
| ATTGATTTCCCTCCCACAAT+GGG | 0.477212 | 5_1:+13463312 | Msa0718980:CDS |
| CCTACGCGGCTTCGCCGCCA+CGG | 0.482897 | 5_1:+13460550 | Msa0718980:CDS |
| TTATGCAAGATATTCATTCT+GGG | 0.487754 | 5_1:+13462290 | Msa0718980:CDS |
| GTATGGTAATTTCCCTCTCC+CGG | 0.489619 | 5_1:+13460694 | Msa0718980:CDS |
| TTAGCTGGACTCCGTCAGTA+TGG | 0.494728 | 5_1:+13460677 | Msa0718980:intron |
| TGGCGGCGAAGCCGCGTAGG+CGG | 0.499488 | 5_1:-13460547 | None:intergenic |
| CCAATATCCAAAACCCATTG+TGG | 0.501815 | 5_1:-13463325 | None:intergenic |
| GCTAGAGGACCTGATAATGC+TGG | 0.501946 | 5_1:+13464090 | Msa0718980:CDS |
| TGATGCTGTAGAAATTGGTC+TGG | 0.501988 | 5_1:+13463798 | Msa0718980:CDS |
| TGGTACCTATAGAGTCAGTT+TGG | 0.510404 | 5_1:+13464396 | Msa0718980:three_prime_UTR |
| ATATCAGCACGCGCCGGGAG+AGG | 0.510910 | 5_1:-13460707 | None:intergenic |
| TTTCAGAAAGGATGGGGTGG+AGG | 0.511254 | 5_1:+13463851 | Msa0718980:CDS |
| CAATATCCAAAACCCATTGT+GGG | 0.513279 | 5_1:-13463324 | None:intergenic |
| TGGATGATGTTAGTTGCTGC+TGG | 0.515852 | 5_1:+13464347 | Msa0718980:exon |
| CAATTCAACTGACTGCTTGG+AGG | 0.518795 | 5_1:+13461862 | Msa0718980:CDS |
| GGGTGGAGGTATCCTGGTAT+TGG | 0.524209 | 5_1:+13463865 | Msa0718980:CDS |
| CATTGATTTCCCTCCCACAA+TGG | 0.525805 | 5_1:+13463311 | Msa0718980:CDS |
| TCAGTTGAAAGTCAACCATC+TGG | 0.528161 | 5_1:+13461686 | Msa0718980:CDS |
| GCAGAAAGGGACTCAAAGAA+TGG | 0.530370 | 5_1:+13461815 | Msa0718980:CDS |
| CAAAGGAAGAACTGGAATTG+AGG | 0.535058 | 5_1:+13463438 | Msa0718980:CDS |
| AAAACAGAATCAATAGATGC+AGG | 0.538608 | 5_1:-13461788 | None:intergenic |
| GGTTGGATTGTTGATGCCGA+TGG | 0.542258 | 5_1:+13460764 | Msa0718980:CDS |
| CATTCATATCAGCACGCGCC+GGG | 0.544842 | 5_1:-13460712 | None:intergenic |
| AAATATTGATGGTGTTGTTG+TGG | 0.545768 | 5_1:+13462622 | Msa0718980:CDS |
| GTGTCTCCCTCCTTCCAACA+TGG | 0.546110 | 5_1:+13460802 | Msa0718980:CDS |
| GTTATGGCATTTCATGAATG+TGG | 0.548376 | 5_1:+13463268 | Msa0718980:CDS |
| TGTTGGAAGGAGGGAGACAC+TGG | 0.550508 | 5_1:-13460799 | None:intergenic |
| ACGCGGCTTCGCCGCCACGG+CGG | 0.551565 | 5_1:+13460553 | Msa0718980:CDS |
| GGATCCTGAAGGCATTAGGC+AGG | 0.553951 | 5_1:+13462577 | Msa0718980:CDS |
| CCCATCCTTTCTGAAAAGGA+AGG | 0.556761 | 5_1:-13463844 | None:intergenic |
| TATCAGCACGCGCCGGGAGA+GGG | 0.558304 | 5_1:-13460706 | None:intergenic |
| TTTGATGACCTGTTTGCAGA+AGG | 0.560533 | 5_1:+13463769 | Msa0718980:CDS |
| TGCATGGTCTACTAAAGTCT+GGG | 0.566186 | 5_1:-13464205 | None:intergenic |
| TCCAGGGATCATTTGCCGCA+AGG | 0.566747 | 5_1:+13461663 | Msa0718980:intron |
| ATTTGTCCCCGCCGCCGTGG+CGG | 0.567720 | 5_1:-13460564 | None:intergenic |
| CCACAACCCCGCCGCCTACG+CGG | 0.569008 | 5_1:+13460536 | Msa0718980:CDS |
| GCGAAGCCGCGTAGGCGGCG+GGG | 0.569975 | 5_1:-13460542 | None:intergenic |
| AACACTAGAGAATCAGTCAC+CGG | 0.572564 | 5_1:+13461739 | Msa0718980:CDS |
| ATGGACGCTTCTTCTTACAT+TGG | 0.572612 | 5_1:+13464178 | Msa0718980:CDS |
| CTAGAGGACCTGATAATGCT+GGG | 0.581369 | 5_1:+13464091 | Msa0718980:CDS |
| AGGAATGCAACCAACCATGT+TGG | 0.584157 | 5_1:-13460816 | None:intergenic |
| ACCTGAAACTCACCAATACC+AGG | 0.584300 | 5_1:-13463877 | None:intergenic |
| GACAAAGAGCGAGTTCTCAA+AGG | 0.589070 | 5_1:+13463421 | Msa0718980:CDS |
| CAACCAACCATGTTGGAAGG+AGG | 0.589912 | 5_1:-13460809 | None:intergenic |
| TTGACTTTCAACTGACCTTG+CGG | 0.590564 | 5_1:-13461678 | None:intergenic |
| AAAGGAACGAACGAAGCTAA+GGG | 0.591350 | 5_1:+13460622 | Msa0718980:CDS |
| TGGCATTTCATGAATGTGGA+GGG | 0.594149 | 5_1:+13463272 | Msa0718980:CDS |
| GAGACAAAACATTATCTGCA+TGG | 0.594938 | 5_1:-13464221 | None:intergenic |
| ATCCAAAACCCATTGTGGGA+GGG | 0.597274 | 5_1:-13463320 | None:intergenic |
| AACCAACCATGTTGGAAGGA+GGG | 0.597351 | 5_1:-13460808 | None:intergenic |
| AATTGGTCTGGGAGCATCTG+GGG | 0.601511 | 5_1:+13463810 | Msa0718980:CDS |
| GGAATTTGTCCCCGCCGCCG+TGG | 0.607736 | 5_1:-13460567 | None:intergenic |
| AGGAGGGAGACACTGGCGAT+AGG | 0.608162 | 5_1:-13460792 | None:intergenic |
| TATCCAAAACCCATTGTGGG+AGG | 0.608960 | 5_1:-13463321 | None:intergenic |
| ATGCAACCAACCATGTTGGA+AGG | 0.612973 | 5_1:-13460812 | None:intergenic |
| ACTTGCTGCTCTCGCGCGTG+AGG | 0.614837 | 5_1:+13460739 | Msa0718980:CDS |
| CATTCATCAACTCTAAGTCC+CGG | 0.620550 | 5_1:-13461758 | None:intergenic |
| TATGCAAGATATTCATTCTG+GGG | 0.623010 | 5_1:+13462291 | Msa0718980:CDS |
| CCATCCTTTCTGAAAAGGAA+GGG | 0.623214 | 5_1:-13463843 | None:intergenic |
| AAATTGGTCTGGGAGCATCT+GGG | 0.623821 | 5_1:+13463809 | Msa0718980:CDS |
| GGGGTAAGTAATCGGAGCTG+TGG | 0.625072 | 5_1:-13460511 | None:intergenic |
| TGCCAGTTGATGGATCCTGA+AGG | 0.625854 | 5_1:+13462566 | Msa0718980:CDS |
| GCGGCGGGGACAAATTCCAC+CGG | 0.628450 | 5_1:+13460572 | Msa0718980:CDS |
| GATGCTGTAGAAATTGGTCT+GGG | 0.630924 | 5_1:+13463799 | Msa0718980:CDS |
| TTGTGGGTCGAGATCTTGTG+TGG | 0.631123 | 5_1:-13460483 | None:intergenic |
| CGCAGAGCTGCCAAACTACG+CGG | 0.638467 | 5_1:+13464054 | Msa0718980:CDS |
| CTGGCGATAGGTAGTTCCAT+CGG | 0.639913 | 5_1:-13460780 | None:intergenic |
| AATACTGAATGCCTATCTTG+GGG | 0.642808 | 5_1:+13463394 | Msa0718980:CDS |
| TCATTCATATCAGCACGCGC+CGG | 0.643548 | 5_1:-13460713 | None:intergenic |
| GGATATTGGAAAAGACAACC+AGG | 0.649948 | 5_1:+13463339 | Msa0718980:CDS |
| CAAAAGAATCCAGTCTCATG+TGG | 0.650881 | 5_1:-13464129 | None:intergenic |
| GAGGGAAATTACCATACTGA+CGG | 0.656418 | 5_1:-13460688 | None:intergenic |
| ACACTAGAGAATCAGTCACC+GGG | 0.668842 | 5_1:+13461740 | Msa0718980:CDS |
| ATGGCATTTCATGAATGTGG+AGG | 0.669763 | 5_1:+13463271 | Msa0718980:CDS |
| GTTCTCAAAGTACCACCAGA+TGG | 0.678737 | 5_1:-13461701 | None:intergenic |
| TTCTACTCGTGATAGCTCGA+CGG | 0.680739 | 5_1:-13460652 | None:intergenic |
| GTTGAAAGTCAACCATCTGG+TGG | 0.685021 | 5_1:+13461689 | Msa0718980:CDS |
| GGAACTCCCAGAAATATGTG+TGG | 0.702347 | 5_1:+13462672 | Msa0718980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAGTTTCAAATTATAATAT+AGG | + | chr5_1:13460914-13460933 | Msa0718980:intron | 10.0% |
| !! | AAAATTGAAAGAAAAAAAGA+AGG | - | chr5_1:13460839-13460858 | None:intergenic | 15.0% |
| !!! | TTTTTTATTTTGGTCTTAAT+CGG | + | chr5_1:13461391-13461410 | Msa0718980:intron | 15.0% |
| !! | CAATAAATTACAAATTTAGA+TGG | - | chr5_1:13462263-13462282 | None:intergenic | 15.0% |
| !! | GTAATAGAAAATAAATGATT+TGG | - | chr5_1:13462886-13462905 | None:intergenic | 15.0% |
| !! | AATAGTTTAAGAACTTTATA+GGG | - | chr5_1:13462954-13462973 | None:intergenic | 15.0% |
| !! | TAATAGTTTAAGAACTTTAT+AGG | - | chr5_1:13462955-13462974 | None:intergenic | 15.0% |
| !! | TTATATTCTATATGTTTGTA+AGG | + | chr5_1:13463967-13463986 | Msa0718980:intron | 15.0% |
| !!! | AGCTTATTTTTAAAAACTCT+CGG | - | chr5_1:13461241-13461260 | None:intergenic | 20.0% |
| !!! | TTTTAAAAATAAGCTGAACA+CGG | + | chr5_1:13461246-13461265 | Msa0718980:intron | 20.0% |
| !!! | TTGCTTAGAGTTTTTTATTT+TGG | + | chr5_1:13461381-13461400 | Msa0718980:intron | 20.0% |
| !!! | TTTTTATTTTGGTCTTAATC+GGG | + | chr5_1:13461392-13461411 | Msa0718980:intron | 20.0% |
| !! | AAATCAATATGTTGAAATGT+TGG | + | chr5_1:13461575-13461594 | Msa0718980:intron | 20.0% |
| !! | AATCAATATGTTGAAATGTT+GGG | + | chr5_1:13461576-13461595 | Msa0718980:intron | 20.0% |
| !! | TTAGTGTTTATGTTTGATTA+AGG | + | chr5_1:13461632-13461651 | Msa0718980:intron | 20.0% |
| !! | AGTTTATGTTGATATGATAT+CGG | + | chr5_1:13462004-13462023 | Msa0718980:intron | 20.0% |
| !! | GTGTGTTTAAATTTATAATG+TGG | + | chr5_1:13462213-13462232 | Msa0718980:intron | 20.0% |
| !! | GAAAAAAAAATTGTACTTAC+AGG | + | chr5_1:13462436-13462455 | Msa0718980:intron | 20.0% |
| !! | CAATATTTAAGGACTTAATA+TGG | - | chr5_1:13462610-13462629 | None:intergenic | 20.0% |
| !! | ATTAAGTCCTTAAATATTGA+TGG | + | chr5_1:13462611-13462630 | Msa0718980:CDS | 20.0% |
| !!! | AGATAAATTTTCCATTTTGA+AGG | - | chr5_1:13462800-13462819 | None:intergenic | 20.0% |
| !! | TATGATACATGATGATTAAT+AGG | + | chr5_1:13462855-13462874 | Msa0718980:intron | 20.0% |
| !!! | CTTTAAAATATGTTTTGAAG+AGG | + | chr5_1:13463193-13463212 | Msa0718980:intron | 20.0% |
| !!! | ATTTGTTTCTTGTTTGTATA+TGG | + | chr5_1:13463592-13463611 | Msa0718980:intron | 20.0% |
| !!! | TATATCAATTTTTCATGTTG+TGG | + | chr5_1:13464298-13464317 | Msa0718980:CDS | 20.0% |
| !! | ATTAGCATTTATTCTATGAA+TGG | - | chr5_1:13464472-13464491 | None:intergenic | 20.0% |
| !! | ATTCATAGAATAAATGCTAA+TGG | + | chr5_1:13464471-13464490 | Msa0718980:three_prime_UTR | 20.0% |
| ! | AATTATTAGTATTGTCGTGT+AGG | + | chr5_1:13461024-13461043 | Msa0718980:intron | 25.0% |
| !! | TTAAGTTGCTTATTCAAACA+GGG | - | chr5_1:13461105-13461124 | None:intergenic | 25.0% |
| !! | ATTAAGTTGCTTATTCAAAC+AGG | - | chr5_1:13461106-13461125 | None:intergenic | 25.0% |
| ! | TCTAAGCAATAACTAACTAA+GGG | - | chr5_1:13461370-13461389 | None:intergenic | 25.0% |
| !!! | TTTTATTTTGGTCTTAATCG+GGG | + | chr5_1:13461393-13461412 | Msa0718980:intron | 25.0% |
| !!! | TAACGCATTTTAGTTAAGTT+CGG | - | chr5_1:13461494-13461513 | None:intergenic | 25.0% |
| !!! | TGATTAAGGTTTTATTATCC+AGG | + | chr5_1:13461646-13461665 | Msa0718980:intron | 25.0% |
| !!! | GATTAAGGTTTTATTATCCA+GGG | + | chr5_1:13461647-13461666 | Msa0718980:intron | 25.0% |
| !!! | ATTCTGTTTTAATTGCAGAA+AGG | + | chr5_1:13461801-13461820 | Msa0718980:CDS | 25.0% |
| !!! | TTCTGTTTTAATTGCAGAAA+GGG | + | chr5_1:13461802-13461821 | Msa0718980:CDS | 25.0% |
| ! | ATAAATTTAAACACACCACT+TGG | - | chr5_1:13462209-13462228 | None:intergenic | 25.0% |
| ! | TTATGCAAGATATTCATTCT+GGG | + | chr5_1:13462290-13462309 | Msa0718980:CDS | 25.0% |
| ! | TTTATGTAAACAGGAACATA+TGG | - | chr5_1:13462343-13462362 | None:intergenic | 25.0% |
| ! | ATAAATATGAGACACTTACT+GGG | - | chr5_1:13462369-13462388 | None:intergenic | 25.0% |
| ! | AATAAATATGAGACACTTAC+TGG | - | chr5_1:13462370-13462389 | None:intergenic | 25.0% |
| !!! | TTTTCTAGAACTTTTTACAC+AGG | - | chr5_1:13462421-13462440 | None:intergenic | 25.0% |
| !!! | TAAAATTAGCCTTTTATTGC+AGG | + | chr5_1:13462523-13462542 | Msa0718980:intron | 25.0% |
| ! | AACAACACCATCAATATTTA+AGG | - | chr5_1:13462621-13462640 | None:intergenic | 25.0% |
| !!! | AAATTTTCCATTTTGAAGGA+TGG | - | chr5_1:13462796-13462815 | None:intergenic | 25.0% |
| ! | TAAACTATTACACTACATGA+AGG | + | chr5_1:13462965-13462984 | Msa0718980:intron | 25.0% |
| ! | GGTATGTAAACATAAATAAC+AGG | - | chr5_1:13463531-13463550 | None:intergenic | 25.0% |
| !!! | TAATGCAACTGTTTTGAAAT+GGG | - | chr5_1:13463919-13463938 | None:intergenic | 25.0% |
| !!! | ATAATGCAACTGTTTTGAAA+TGG | - | chr5_1:13463920-13463939 | None:intergenic | 25.0% |
| ! | CTTATAACTGTGACTAAATT+TGG | + | chr5_1:13464327-13464346 | Msa0718980:CDS | 25.0% |
| ! | TTGCATTCATAATTGATAGA+TGG | + | chr5_1:13464376-13464395 | Msa0718980:three_prime_UTR | 25.0% |
| ! | AGTAAATGCCTCATATTAAA+GGG | - | chr5_1:13464426-13464445 | None:intergenic | 25.0% |
| ! | TAGTAAATGCCTCATATTAA+AGG | - | chr5_1:13464427-13464446 | None:intergenic | 25.0% |
| TTGAATTTAACCACATGTGT+CGG | - | chr5_1:13460995-13461014 | None:intergenic | 30.0% | |
| CTCTAAGCAATAACTAACTA+AGG | - | chr5_1:13461371-13461390 | None:intergenic | 30.0% | |
| !! | CTTATTTTCGAATCAATCAC+TGG | - | chr5_1:13461423-13461442 | None:intergenic | 30.0% |
| CTGAACTACTTGATTTAGTT+GGG | + | chr5_1:13461524-13461543 | Msa0718980:intron | 30.0% | |
| TGAACTACTTGATTTAGTTG+GGG | + | chr5_1:13461525-13461544 | Msa0718980:intron | 30.0% | |
| AATATGTTGAAATGTTGGGT+TGG | + | chr5_1:13461580-13461599 | Msa0718980:intron | 30.0% | |
| ATATGTTGAAATGTTGGGTT+GGG | + | chr5_1:13461581-13461600 | Msa0718980:intron | 30.0% | |
| AAAACAGAATCAATAGATGC+AGG | - | chr5_1:13461791-13461810 | None:intergenic | 30.0% | |
| CATAAACTAGAAAAACAGTG+AGG | - | chr5_1:13461992-13462011 | None:intergenic | 30.0% | |
| ! | GGTGTGTATTGATATACTAT+TGG | + | chr5_1:13462073-13462092 | Msa0718980:intron | 30.0% |
| ! | TTTTCTAACAAGCCAAAGTT+GGG | + | chr5_1:13462131-13462150 | Msa0718980:intron | 30.0% |
| TGAAATAAGCTTCATGCAAT+TGG | - | chr5_1:13462159-13462178 | None:intergenic | 30.0% | |
| CTTATGCAAGATATTCATTC+TGG | + | chr5_1:13462289-13462308 | Msa0718980:CDS | 30.0% | |
| TATGCAAGATATTCATTCTG+GGG | + | chr5_1:13462291-13462310 | Msa0718980:CDS | 30.0% | |
| !! | TTTGACTTGTATTTGATCAC+AGG | + | chr5_1:13462495-13462514 | Msa0718980:intron | 30.0% |
| !! | TTGACTTGTATTTGATCACA+GGG | + | chr5_1:13462496-13462515 | Msa0718980:intron | 30.0% |
| ! | TAACAAATTTTGCCAGTTGA+TGG | + | chr5_1:13462556-13462575 | Msa0718980:CDS | 30.0% |
| !! | AAATATTGATGGTGTTGTTG+TGG | + | chr5_1:13462622-13462641 | Msa0718980:CDS | 30.0% |
| AGAATTCAAGCTGAATATAC+AGG | + | chr5_1:13462727-13462746 | Msa0718980:CDS | 30.0% | |
| !! | TATTACAAGAGTGTCATTTC+TGG | + | chr5_1:13462900-13462919 | Msa0718980:intron | 30.0% |
| AGTTTAAGAACTTTATAGGG+AGG | - | chr5_1:13462951-13462970 | None:intergenic | 30.0% | |
| TAAAGATGCTTTCCAATTAG+AGG | - | chr5_1:13463178-13463197 | None:intergenic | 30.0% | |
| ! | TCAAATTCTGAAGGTTGTTA+TGG | + | chr5_1:13463252-13463271 | Msa0718980:intron | 30.0% |
| ! | ATATTTTTCACAGATCGTGA+AGG | + | chr5_1:13463364-13463383 | Msa0718980:CDS | 30.0% |
| AAATACTGAATGCCTATCTT+GGG | + | chr5_1:13463393-13463412 | Msa0718980:CDS | 30.0% | |
| TATCTGCATTTCATCTGAAA+GGG | + | chr5_1:13463562-13463581 | Msa0718980:intron | 30.0% | |
| TTGATATGATGAGAAGCTTT+CGG | + | chr5_1:13463740-13463759 | Msa0718980:CDS | 30.0% | |
| ATGATTGATGCTGTAGAAAT+TGG | + | chr5_1:13463793-13463812 | Msa0718980:CDS | 30.0% | |
| !!! | AATGCAACTGTTTTGAAATG+GGG | - | chr5_1:13463918-13463937 | None:intergenic | 30.0% |
| GGTGATTATGACAACTATTA+TGG | + | chr5_1:13464159-13464178 | Msa0718980:CDS | 30.0% | |
| GGGAACAAAAATTATTGTCA+AGG | + | chr5_1:13464263-13464282 | Msa0718980:CDS | 30.0% | |
| ! | TATTGTCAAGGTAGTTTTTC+TGG | + | chr5_1:13464275-13464294 | Msa0718980:CDS | 30.0% |
| !!! | TCGCTCTTTTTTTCCTTTTC+CGG | - | chr5_1:13460594-13460613 | None:intergenic | 35.0% |
| AAAAGAGCGAGAGAAAGAAA+AGG | + | chr5_1:13460604-13460623 | Msa0718980:CDS | 35.0% | |
| TGATGATTGCTTCTGATTGA+AGG | + | chr5_1:13460858-13460877 | Msa0718980:intron | 35.0% | |
| ATTAGTATTGTCGTGTAGGA+TGG | + | chr5_1:13461028-13461047 | Msa0718980:intron | 35.0% | |
| CACTTGTAAGATTGTTTGAG+AGG | - | chr5_1:13461305-13461324 | None:intergenic | 35.0% | |
| TTAGTTAAGTTCGGATAGCT+TGG | - | chr5_1:13461485-13461504 | None:intergenic | 35.0% | |
| GCTGAACTACTTGATTTAGT+TGG | + | chr5_1:13461523-13461542 | Msa0718980:intron | 35.0% | |
| GAACTACTTGATTTAGTTGG+GGG | + | chr5_1:13461526-13461545 | Msa0718980:intron | 35.0% | |
| ! | TGGTACTTTGAGAACTTGTT+CGG | + | chr5_1:13461709-13461728 | Msa0718980:CDS | 35.0% |
| ! | TTTGAGAACTTGTTCGGTTA+AGG | + | chr5_1:13461715-13461734 | Msa0718980:CDS | 35.0% |
| AGCAGTCAGTTGAATTGATT+GGG | - | chr5_1:13461859-13461878 | None:intergenic | 35.0% | |
| AAGCAGTCAGTTGAATTGAT+TGG | - | chr5_1:13461860-13461879 | None:intergenic | 35.0% | |
| AATCAATTCAACTGACTGCT+TGG | + | chr5_1:13461859-13461878 | Msa0718980:CDS | 35.0% | |
| ! | CTTTTCTAACAAGCCAAAGT+TGG | + | chr5_1:13462130-13462149 | Msa0718980:intron | 35.0% |
| !! | ACTGGGAGTTTTATGTAAAC+AGG | - | chr5_1:13462352-13462371 | None:intergenic | 35.0% |
| ! | CTAGAACTTTTTACACAGGT+TGG | - | chr5_1:13462417-13462436 | None:intergenic | 35.0% |
| AACAGAGTTAAAGCCTCAAA+AGG | - | chr5_1:13462477-13462496 | None:intergenic | 35.0% | |
| TAATACCAGCCTGCAATAAA+AGG | - | chr5_1:13462535-13462554 | None:intergenic | 35.0% | |
| GGATGCATGTATAACATGAT+AGG | - | chr5_1:13462775-13462794 | None:intergenic | 35.0% | |
| ACTACATGAAGGACTGAATA+GGG | + | chr5_1:13462976-13462995 | Msa0718980:intron | 35.0% | |
| ATAAGATTGTTTCCCTAGCT+TGG | + | chr5_1:13463104-13463123 | Msa0718980:intron | 35.0% | |
| TTCACATACTATCCAAGCTA+GGG | - | chr5_1:13463119-13463138 | None:intergenic | 35.0% | |
| TTTCACATACTATCCAAGCT+AGG | - | chr5_1:13463120-13463139 | None:intergenic | 35.0% | |
| ATGTCAGAAGTTCCTCTAAT+TGG | + | chr5_1:13463163-13463182 | Msa0718980:intron | 35.0% | |
| CTTGACTCTTCAAATTCTGA+AGG | + | chr5_1:13463243-13463262 | Msa0718980:intron | 35.0% | |
| GTTATGGCATTTCATGAATG+TGG | + | chr5_1:13463268-13463287 | Msa0718980:CDS | 35.0% | |
| CAATATCCAAAACCCATTGT+GGG | - | chr5_1:13463327-13463346 | None:intergenic | 35.0% | |
| GATCTGTGAAAAATATGTCC+TGG | - | chr5_1:13463360-13463379 | None:intergenic | 35.0% | |
| GAAATACTGAATGCCTATCT+TGG | + | chr5_1:13463392-13463411 | Msa0718980:CDS | 35.0% | |
| AATACTGAATGCCTATCTTG+GGG | + | chr5_1:13463394-13463413 | Msa0718980:CDS | 35.0% | |
| AATGCAGATACACTGGAAAT+TGG | - | chr5_1:13463552-13463571 | None:intergenic | 35.0% | |
| GTATCTGCATTTCATCTGAA+AGG | + | chr5_1:13463561-13463580 | Msa0718980:intron | 35.0% | |
| TAGCCTTCTGCATTATATAC+AGG | + | chr5_1:13463711-13463730 | Msa0718980:intron | 35.0% | |
| AGACCTGTATATAATGCAGA+AGG | - | chr5_1:13463717-13463736 | None:intergenic | 35.0% | |
| ! | AATACCCTTCCTTTTCAGAA+AGG | + | chr5_1:13463839-13463858 | Msa0718980:CDS | 35.0% |
| GAGACAAAACATTATCTGCA+TGG | - | chr5_1:13464224-13464243 | None:intergenic | 35.0% | |
| ! | TTTTTGTTCCCTCAAAAGCA+AGG | - | chr5_1:13464254-13464273 | None:intergenic | 35.0% |
| TTGGTATGCCCTTTAATATG+AGG | + | chr5_1:13464415-13464434 | Msa0718980:three_prime_UTR | 35.0% | |
| TTGTGGTTGGGGTAAGTAAT+CGG | - | chr5_1:13460522-13460541 | None:intergenic | 40.0% | |
| !!! | CTCTTTTTTTCCTTTTCCGG+TGG | - | chr5_1:13460591-13460610 | None:intergenic | 40.0% |
| AAAAGGAACGAACGAAGCTA+AGG | + | chr5_1:13460621-13460640 | Msa0718980:CDS | 40.0% | |
| AAAGGAACGAACGAAGCTAA+GGG | + | chr5_1:13460622-13460641 | Msa0718980:CDS | 40.0% | |
| ATCACGAGTAGAATGTTAGC+TGG | + | chr5_1:13460662-13460681 | Msa0718980:intron | 40.0% | |
| GAGGGAAATTACCATACTGA+CGG | - | chr5_1:13460691-13460710 | None:intergenic | 40.0% | |
| TCAAATAAGCCGATCCAAAC+TGG | + | chr5_1:13461344-13461363 | Msa0718980:intron | 40.0% | |
| TAACTAACTAAGGGCCAGTT+TGG | - | chr5_1:13461361-13461380 | None:intergenic | 40.0% | |
| TTGACTTTCAACTGACCTTG+CGG | - | chr5_1:13461681-13461700 | None:intergenic | 40.0% | |
| TCAGTTGAAAGTCAACCATC+TGG | + | chr5_1:13461686-13461705 | Msa0718980:CDS | 40.0% | |
| AACACTAGAGAATCAGTCAC+CGG | + | chr5_1:13461739-13461758 | Msa0718980:CDS | 40.0% | |
| CATTCATCAACTCTAAGTCC+CGG | - | chr5_1:13461761-13461780 | None:intergenic | 40.0% | |
| CTCAGCATAATCAGATTCTC+TGG | + | chr5_1:13462047-13462066 | Msa0718980:intron | 40.0% | |
| CATAATCAGATTCTCTGGTC+TGG | + | chr5_1:13462052-13462071 | Msa0718980:intron | 40.0% | |
| ! | ATGCAATTGGTTCCCAACTT+TGG | - | chr5_1:13462146-13462165 | None:intergenic | 40.0% |
| ! | GTTTTTAACCCAAGTCCAAG+TGG | + | chr5_1:13462191-13462210 | Msa0718980:intron | 40.0% |
| TAAACACACCACTTGGACTT+GGG | - | chr5_1:13462202-13462221 | None:intergenic | 40.0% | |
| TTAAACACACCACTTGGACT+TGG | - | chr5_1:13462203-13462222 | None:intergenic | 40.0% | |
| ATGTCGAGAAGTGATTGAAC+AGG | + | chr5_1:13462236-13462255 | Msa0718980:intron | 40.0% | |
| !!! | ATTAGCCTTTTATTGCAGGC+TGG | + | chr5_1:13462527-13462546 | Msa0718980:intron | 40.0% |
| !! | ATGGTGTTGTTGTGGATTGT+TGG | + | chr5_1:13462630-13462649 | Msa0718980:CDS | 40.0% |
| ! | TGTTGTTGTGGATTGTTGGT+GGG | + | chr5_1:13462634-13462653 | Msa0718980:CDS | 40.0% |
| AATATGTGTGGTCTGGGTAT+AGG | + | chr5_1:13462684-13462703 | Msa0718980:CDS | 40.0% | |
| ATATGTGTGGTCTGGGTATA+GGG | + | chr5_1:13462685-13462704 | Msa0718980:CDS | 40.0% | |
| CATGCATCCATCCTTCAAAA+TGG | + | chr5_1:13462786-13462805 | Msa0718980:intron | 40.0% | |
| !! | CAAGAGTGTCATTTCTGGTT+AGG | + | chr5_1:13462905-13462924 | Msa0718980:intron | 40.0% |
| CACTACATGAAGGACTGAAT+AGG | + | chr5_1:13462975-13462994 | Msa0718980:intron | 40.0% | |
| AATAGGGAACACAGAGAATG+TGG | + | chr5_1:13462992-13463011 | Msa0718980:intron | 40.0% | |
| ATGGCATTTCATGAATGTGG+AGG | + | chr5_1:13463271-13463290 | Msa0718980:CDS | 40.0% | |
| TGGCATTTCATGAATGTGGA+GGG | + | chr5_1:13463272-13463291 | Msa0718980:CDS | 40.0% | |
| ! | ATTGATTTCCCTCCCACAAT+GGG | + | chr5_1:13463312-13463331 | Msa0718980:CDS | 40.0% |
| CCAATATCCAAAACCCATTG+TGG | - | chr5_1:13463328-13463347 | None:intergenic | 40.0% | |
| !!! | CCACAATGGGTTTTGGATAT+TGG | + | chr5_1:13463325-13463344 | Msa0718980:CDS | 40.0% |
| GGATATTGGAAAAGACAACC+AGG | + | chr5_1:13463339-13463358 | Msa0718980:CDS | 40.0% | |
| ! | TTTTCACAGATCGTGAAGGA+CGG | + | chr5_1:13463368-13463387 | Msa0718980:CDS | 40.0% |
| CTTTGTCAATTCCCCAAGAT+AGG | - | chr5_1:13463408-13463427 | None:intergenic | 40.0% | |
| CAAAGGAAGAACTGGAATTG+AGG | + | chr5_1:13463438-13463457 | Msa0718980:CDS | 40.0% | |
| CAGATGAAATGCAGATACAC+TGG | - | chr5_1:13463559-13463578 | None:intergenic | 40.0% | |
| ! | TTTGATGACCTGTTTGCAGA+AGG | + | chr5_1:13463769-13463788 | Msa0718980:CDS | 40.0% |
| CAATCATACCTTCTGCAAAC+AGG | - | chr5_1:13463780-13463799 | None:intergenic | 40.0% | |
| TGATGCTGTAGAAATTGGTC+TGG | + | chr5_1:13463798-13463817 | Msa0718980:CDS | 40.0% | |
| ! | GATGCTGTAGAAATTGGTCT+GGG | + | chr5_1:13463799-13463818 | Msa0718980:CDS | 40.0% |
| ! | CCATCCTTTCTGAAAAGGAA+GGG | - | chr5_1:13463846-13463865 | None:intergenic | 40.0% |
| ! | CCTTCCTTTTCAGAAAGGAT+GGG | + | chr5_1:13463844-13463863 | Msa0718980:CDS | 40.0% |
| ! | CTTCCTTTTCAGAAAGGATG+GGG | + | chr5_1:13463845-13463864 | Msa0718980:CDS | 40.0% |
| !! | TTTCAGGTACCTCGTTCTTT+TGG | + | chr5_1:13463892-13463911 | Msa0718980:intron | 40.0% |
| CAAAAGAATCCAGTCTCATG+TGG | - | chr5_1:13464132-13464151 | None:intergenic | 40.0% | |
| ATGGACGCTTCTTCTTACAT+TGG | + | chr5_1:13464178-13464197 | Msa0718980:CDS | 40.0% | |
| TGCATGGTCTACTAAAGTCT+GGG | - | chr5_1:13464208-13464227 | None:intergenic | 40.0% | |
| !! | TCTTGCAAACCTTGCTTTTG+AGG | + | chr5_1:13464242-13464261 | Msa0718980:CDS | 40.0% |
| !! | CTTGCAAACCTTGCTTTTGA+GGG | + | chr5_1:13464243-13464262 | Msa0718980:CDS | 40.0% |
| TGGTACCTATAGAGTCAGTT+TGG | + | chr5_1:13464396-13464415 | Msa0718980:three_prime_UTR | 40.0% | |
| ! | GCATACCAAACTGACTCTAT+AGG | - | chr5_1:13464404-13464423 | None:intergenic | 40.0% |
| TTCTACTCGTGATAGCTCGA+CGG | - | chr5_1:13460655-13460674 | None:intergenic | 45.0% | |
| GTATGGTAATTTCCCTCTCC+CGG | + | chr5_1:13460694-13460713 | Msa0718980:CDS | 45.0% | |
| AACCAACCATGTTGGAAGGA+GGG | - | chr5_1:13460811-13460830 | None:intergenic | 45.0% | |
| ATGCAACCAACCATGTTGGA+AGG | - | chr5_1:13460815-13460834 | None:intergenic | 45.0% | |
| AGGAATGCAACCAACCATGT+TGG | - | chr5_1:13460819-13460838 | None:intergenic | 45.0% | |
| AGCTACCTAGCACCACATTT+CGG | + | chr5_1:13460942-13460961 | Msa0718980:intron | 45.0% | |
| ! | TTAACCACATGTGTCGGTGT+TGG | - | chr5_1:13460989-13461008 | None:intergenic | 45.0% |
| AACTAAGGGCCAGTTTGGAT+CGG | - | chr5_1:13461356-13461375 | None:intergenic | 45.0% | |
| GTTGAAAGTCAACCATCTGG+TGG | + | chr5_1:13461689-13461708 | Msa0718980:CDS | 45.0% | |
| ! | GTTCTCAAAGTACCACCAGA+TGG | - | chr5_1:13461704-13461723 | None:intergenic | 45.0% |
| ACACTAGAGAATCAGTCACC+GGG | + | chr5_1:13461740-13461759 | Msa0718980:CDS | 45.0% | |
| GCAGAAAGGGACTCAAAGAA+TGG | + | chr5_1:13461815-13461834 | Msa0718980:CDS | 45.0% | |
| CAATTCAACTGACTGCTTGG+AGG | + | chr5_1:13461862-13461881 | Msa0718980:CDS | 45.0% | |
| ! | TCACTTAGCGTGTCCTTTTG+AGG | + | chr5_1:13462461-13462480 | Msa0718980:intron | 45.0% |
| !! | TGATGGATCCTGAAGGCATT+AGG | + | chr5_1:13462573-13462592 | Msa0718980:CDS | 45.0% |
| ! | GTGTTGTTGTGGATTGTTGG+TGG | + | chr5_1:13462633-13462652 | Msa0718980:CDS | 45.0% |
| ! | GTTGTTGTGGATTGTTGGTG+GGG | + | chr5_1:13462635-13462654 | Msa0718980:CDS | 45.0% |
| GGAACTCCCAGAAATATGTG+TGG | + | chr5_1:13462672-13462691 | Msa0718980:CDS | 45.0% | |
| TCCCAGAAATATGTGTGGTC+TGG | + | chr5_1:13462677-13462696 | Msa0718980:CDS | 45.0% | |
| CCCAGACCACACATATTTCT+GGG | - | chr5_1:13462681-13462700 | None:intergenic | 45.0% | |
| CCCAGAAATATGTGTGGTCT+GGG | + | chr5_1:13462678-13462697 | Msa0718980:CDS | 45.0% | |
| ACCCAGACCACACATATTTC+TGG | - | chr5_1:13462682-13462701 | None:intergenic | 45.0% | |
| ACAGAGAATGTGGCGAAGTA+CGG | + | chr5_1:13463002-13463021 | Msa0718980:intron | 45.0% | |
| !! | CATTGATTTCCCTCCCACAA+TGG | + | chr5_1:13463311-13463330 | Msa0718980:CDS | 45.0% |
| ATCCAAAACCCATTGTGGGA+GGG | - | chr5_1:13463323-13463342 | None:intergenic | 45.0% | |
| TATCCAAAACCCATTGTGGG+AGG | - | chr5_1:13463324-13463343 | None:intergenic | 45.0% | |
| GACAAAGAGCGAGTTCTCAA+AGG | + | chr5_1:13463421-13463440 | Msa0718980:CDS | 45.0% | |
| CGAGTTCTCAAAGGAAGAAC+TGG | + | chr5_1:13463430-13463449 | Msa0718980:CDS | 45.0% | |
| !! | AAATTGGTCTGGGAGCATCT+GGG | + | chr5_1:13463809-13463828 | Msa0718980:CDS | 45.0% |
| ! | CCCTTCCTTTTCAGAAAGGA+TGG | + | chr5_1:13463843-13463862 | Msa0718980:CDS | 45.0% |
| ! | CCCATCCTTTCTGAAAAGGA+AGG | - | chr5_1:13463847-13463866 | None:intergenic | 45.0% |
| !! | TCCTGGTATTGGTGAGTTTC+AGG | + | chr5_1:13463876-13463895 | Msa0718980:CDS | 45.0% |
| ACCTGAAACTCACCAATACC+AGG | - | chr5_1:13463880-13463899 | None:intergenic | 45.0% | |
| AAAAGAGTGACCGCGTAGTT+TGG | - | chr5_1:13464067-13464086 | None:intergenic | 45.0% | |
| ! | AACTACGCGGTCACTCTTTT+TGG | + | chr5_1:13464067-13464086 | Msa0718980:CDS | 45.0% |
| ! | ACTACGCGGTCACTCTTTTT+GGG | + | chr5_1:13464068-13464087 | Msa0718980:CDS | 45.0% |
| ! | CTAGAGGACCTGATAATGCT+GGG | + | chr5_1:13464091-13464110 | Msa0718980:CDS | 45.0% |
| TTGTAGTGCCCAGCATTATC+AGG | - | chr5_1:13464102-13464121 | None:intergenic | 45.0% | |
| AACTCTATGCCACATGAGAC+TGG | + | chr5_1:13464120-13464139 | Msa0718980:CDS | 45.0% | |
| ! | ACTGGATTCTTTTGTGAGCG+AGG | + | chr5_1:13464138-13464157 | Msa0718980:CDS | 45.0% |
| CTGCATGGTCTACTAAAGTC+TGG | - | chr5_1:13464209-13464228 | None:intergenic | 45.0% | |
| TGGATGATGTTAGTTGCTGC+TGG | + | chr5_1:13464347-13464366 | Msa0718980:exon | 45.0% | |
| TTGTGGGTCGAGATCTTGTG+TGG | - | chr5_1:13460486-13460505 | None:intergenic | 50.0% | |
| GGGACAAATTCCACCGGAAA+AGG | + | chr5_1:13460578-13460597 | Msa0718980:CDS | 50.0% | |
| TTAGCTGGACTCCGTCAGTA+TGG | + | chr5_1:13460677-13460696 | Msa0718980:intron | 50.0% | |
| TCATTCATATCAGCACGCGC+CGG | - | chr5_1:13460716-13460735 | None:intergenic | 50.0% | |
| GGTTGGATTGTTGATGCCGA+TGG | + | chr5_1:13460764-13460783 | Msa0718980:CDS | 50.0% | |
| CTGGCGATAGGTAGTTCCAT+CGG | - | chr5_1:13460783-13460802 | None:intergenic | 50.0% | |
| CAACCAACCATGTTGGAAGG+AGG | - | chr5_1:13460812-13460831 | None:intergenic | 50.0% | |
| ! | CTTCTGATTGAAGGCGTGTC+CGG | + | chr5_1:13460867-13460886 | Msa0718980:intron | 50.0% |
| GAACGCACTAACACAGACAC+CGG | - | chr5_1:13460889-13460908 | None:intergenic | 50.0% | |
| ! | ATGTGGTGCTAGGTAGCTTC+TGG | - | chr5_1:13460940-13460959 | None:intergenic | 50.0% |
| GCTACCTAGCACCACATTTC+GGG | + | chr5_1:13460943-13460962 | Msa0718980:intron | 50.0% | |
| AACACCCGAAATGTGGTGCT+AGG | - | chr5_1:13460950-13460969 | None:intergenic | 50.0% | |
| GTCGTGTAGGATGGTAACTC+TGG | + | chr5_1:13461037-13461056 | Msa0718980:intron | 50.0% | |
| ! | GGAGGCTGATCAGGTGATTT+TGG | + | chr5_1:13461880-13461899 | Msa0718980:intron | 50.0% |
| !! | TGCCAGTTGATGGATCCTGA+AGG | + | chr5_1:13462566-13462585 | Msa0718980:CDS | 50.0% |
| TGCCTTCAGGATCCATCAAC+TGG | - | chr5_1:13462571-13462590 | None:intergenic | 50.0% | |
| !! | TGTTGGTGGGGCATTGTTGA+AGG | + | chr5_1:13462647-13462666 | Msa0718980:CDS | 50.0% |
| AGAATGTGGCGAAGTACGGA+GGG | + | chr5_1:13463006-13463025 | Msa0718980:intron | 50.0% | |
| !! | TTCCCTCCCACAATGGGTTT+TGG | + | chr5_1:13463318-13463337 | Msa0718980:CDS | 50.0% |
| !! | GAAATTGGTCTGGGAGCATC+TGG | + | chr5_1:13463808-13463827 | Msa0718980:CDS | 50.0% |
| !! | AATTGGTCTGGGAGCATCTG+GGG | + | chr5_1:13463810-13463829 | Msa0718980:CDS | 50.0% |
| ! | CCACCCCATCCTTTCTGAAA+AGG | - | chr5_1:13463851-13463870 | None:intergenic | 50.0% |
| ! | CCTTTTCAGAAAGGATGGGG+TGG | + | chr5_1:13463848-13463867 | Msa0718980:CDS | 50.0% |
| TTTCAGAAAGGATGGGGTGG+AGG | + | chr5_1:13463851-13463870 | Msa0718980:CDS | 50.0% | |
| GAAATGGGGCCAAAAGAACG+AGG | - | chr5_1:13463904-13463923 | None:intergenic | 50.0% | |
| !! | GGTCACTCTTTTTGGGCTAG+AGG | + | chr5_1:13464075-13464094 | Msa0718980:CDS | 50.0% |
| ! | GCTAGAGGACCTGATAATGC+TGG | + | chr5_1:13464090-13464109 | Msa0718980:CDS | 50.0% |
| GGGGTAAGTAATCGGAGCTG+TGG | - | chr5_1:13460514-13460533 | None:intergenic | 55.0% | |
| CATTCATATCAGCACGCGCC+GGG | - | chr5_1:13460715-13460734 | None:intergenic | 55.0% | |
| TGTTGGAAGGAGGGAGACAC+TGG | - | chr5_1:13460802-13460821 | None:intergenic | 55.0% | |
| GTGTCTCCCTCCTTCCAACA+TGG | + | chr5_1:13460802-13460821 | Msa0718980:CDS | 55.0% | |
| CTCCCTCCTTCCAACATGGT+TGG | + | chr5_1:13460806-13460825 | Msa0718980:intron | 55.0% | |
| TGCGTCGAACACCCGAAATG+TGG | - | chr5_1:13460957-13460976 | None:intergenic | 55.0% | |
| GTGTCCAACACCGACACATG+TGG | + | chr5_1:13460982-13461001 | Msa0718980:intron | 55.0% | |
| TCCAGGGATCATTTGCCGCA+AGG | + | chr5_1:13461663-13461682 | Msa0718980:intron | 55.0% | |
| ACCTTGCGGCAAATGATCCC+TGG | - | chr5_1:13461667-13461686 | None:intergenic | 55.0% | |
| TGACTGCTTGGAGGCTGATC+AGG | + | chr5_1:13461871-13461890 | Msa0718980:CDS | 55.0% | |
| !! | GGATCCTGAAGGCATTAGGC+AGG | + | chr5_1:13462577-13462596 | Msa0718980:CDS | 55.0% |
| AGCTCCTGCCTAATGCCTTC+AGG | - | chr5_1:13462584-13462603 | None:intergenic | 55.0% | |
| GAGAATGTGGCGAAGTACGG+AGG | + | chr5_1:13463005-13463024 | Msa0718980:intron | 55.0% | |
| AGTACGGAGGGCAAACGTAG+TGG | + | chr5_1:13463018-13463037 | Msa0718980:intron | 55.0% | |
| !! | GGGTGGAGGTATCCTGGTAT+TGG | + | chr5_1:13463865-13463884 | Msa0718980:CDS | 55.0% |
| ! | CGGAGCTGTGGTCGCTTTGT+GGG | - | chr5_1:13460502-13460521 | None:intergenic | 60.0% |
| ! | TCGGAGCTGTGGTCGCTTTG+TGG | - | chr5_1:13460503-13460522 | None:intergenic | 60.0% |
| AGGAGGGAGACACTGGCGAT+AGG | - | chr5_1:13460795-13460814 | None:intergenic | 60.0% | |
| TTCGGGTGTTCGACGCATGC+TGG | + | chr5_1:13460960-13460979 | Msa0718980:intron | 60.0% | |
| !! | GGTGGGGCATTGTTGAAGGC+TGG | + | chr5_1:13462651-13462670 | Msa0718980:CDS | 60.0% |
| CGGAGGGCAAACGTAGTGGT+TGG | + | chr5_1:13463022-13463041 | Msa0718980:intron | 60.0% | |
| !! | AGGATGGGGTGGAGGTATCC+TGG | + | chr5_1:13463859-13463878 | Msa0718980:CDS | 60.0% |
| CGCAGAGCTGCCAAACTACG+CGG | + | chr5_1:13464054-13464073 | Msa0718980:CDS | 60.0% | |
| TAGGCGGCGGGGTTGTGGTT+GGG | - | chr5_1:13460534-13460553 | None:intergenic | 65.0% | |
| GCGGCGGGGACAAATTCCAC+CGG | + | chr5_1:13460572-13460591 | Msa0718980:CDS | 65.0% | |
| TATCAGCACGCGCCGGGAGA+GGG | - | chr5_1:13460709-13460728 | None:intergenic | 65.0% | |
| ATATCAGCACGCGCCGGGAG+AGG | - | chr5_1:13460710-13460729 | None:intergenic | 65.0% | |
| ! | ACTTGCTGCTCTCGCGCGTG+AGG | + | chr5_1:13460739-13460758 | Msa0718980:CDS | 65.0% |
| AGGCGGCGGGGTTGTGGTTG+GGG | - | chr5_1:13460533-13460552 | None:intergenic | 70.0% | |
| GTAGGCGGCGGGGTTGTGGT+TGG | - | chr5_1:13460535-13460554 | None:intergenic | 70.0% | |
| ATTTGTCCCCGCCGCCGTGG+CGG | - | chr5_1:13460567-13460586 | None:intergenic | 70.0% | |
| GGAATTTGTCCCCGCCGCCG+TGG | - | chr5_1:13460570-13460589 | None:intergenic | 70.0% | |
| CTCTCGCGCGTGAGGCTGGT+TGG | + | chr5_1:13460747-13460766 | Msa0718980:CDS | 70.0% | |
| CCACAACCCCGCCGCCTACG+CGG | + | chr5_1:13460536-13460555 | Msa0718980:CDS | 75.0% | |
| TGGCGGCGAAGCCGCGTAGG+CGG | - | chr5_1:13460550-13460569 | None:intergenic | 75.0% | |
| CCTACGCGGCTTCGCCGCCA+CGG | + | chr5_1:13460550-13460569 | Msa0718980:CDS | 75.0% | |
| GCTGCTCTCGCGCGTGAGGC+TGG | + | chr5_1:13460743-13460762 | Msa0718980:CDS | 75.0% | |
| ! | CCGCGTAGGCGGCGGGGTTG+TGG | - | chr5_1:13460539-13460558 | None:intergenic | 80.0% |
| ! | GCGAAGCCGCGTAGGCGGCG+GGG | - | chr5_1:13460545-13460564 | None:intergenic | 80.0% |
| ! | GGCGAAGCCGCGTAGGCGGC+GGG | - | chr5_1:13460546-13460565 | None:intergenic | 80.0% |
| ! | CGGCGAAGCCGCGTAGGCGG+CGG | - | chr5_1:13460547-13460566 | None:intergenic | 80.0% |
| ! | CCGTGGCGGCGAAGCCGCGT+AGG | - | chr5_1:13460553-13460572 | None:intergenic | 80.0% |
| ! | ACGCGGCTTCGCCGCCACGG+CGG | + | chr5_1:13460553-13460572 | Msa0718980:CDS | 80.0% |
| ! | CGGCTTCGCCGCCACGGCGG+CGG | + | chr5_1:13460556-13460575 | Msa0718980:CDS | 85.0% |
| ! | GGCTTCGCCGCCACGGCGGC+GGG | + | chr5_1:13460557-13460576 | Msa0718980:CDS | 85.0% |
| ! | GCTTCGCCGCCACGGCGGCG+GGG | + | chr5_1:13460558-13460577 | Msa0718980:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 13460455 | 13464494 | 13460455 | ID=Msa0718980;Name=Msa0718980 |
| chr5_1 | mRNA | 13460455 | 13464494 | 13460455 | ID=Msa0718980-mRNA-1;Parent=Msa0718980;Name=Msa0718980-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0.85|0.75|1|0.85|0.75|8|141|518 |
| chr5_1 | exon | 13460455 | 13460668 | 13460455 | ID=Msa0718980-mRNA-1:exon:5461;Parent=Msa0718980-mRNA-1 |
| chr5_1 | exon | 13460681 | 13460823 | 13460681 | ID=Msa0718980-mRNA-1:exon:5462;Parent=Msa0718980-mRNA-1 |
| chr5_1 | exon | 13461668 | 13461892 | 13461668 | ID=Msa0718980-mRNA-1:exon:5463;Parent=Msa0718980-mRNA-1 |
| chr5_1 | exon | 13462289 | 13462369 | 13462289 | ID=Msa0718980-mRNA-1:exon:5464;Parent=Msa0718980-mRNA-1 |
| chr5_1 | exon | 13462545 | 13462748 | 13462545 | ID=Msa0718980-mRNA-1:exon:5465;Parent=Msa0718980-mRNA-1 |
| chr5_1 | exon | 13463265 | 13463459 | 13463265 | ID=Msa0718980-mRNA-1:exon:5466;Parent=Msa0718980-mRNA-1 |
| chr5_1 | exon | 13463733 | 13463897 | 13463733 | ID=Msa0718980-mRNA-1:exon:5467;Parent=Msa0718980-mRNA-1 |
| chr5_1 | exon | 13464024 | 13464494 | 13464024 | ID=Msa0718980-mRNA-1:exon:5468;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13460455 | 13460668 | 13460455 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13460681 | 13460823 | 13460681 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13461668 | 13461892 | 13461668 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13462289 | 13462369 | 13462289 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13462545 | 13462748 | 13462545 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13463265 | 13463459 | 13463265 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13463733 | 13463897 | 13463733 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | CDS | 13464024 | 13464353 | 13464024 | ID=Msa0718980-mRNA-1:cds;Parent=Msa0718980-mRNA-1 |
| chr5_1 | three_prime_UTR | 13464354 | 13464494 | 13464354 | ID=Msa0718980-mRNA-1:three_prime_utr;Parent=Msa0718980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
