Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719360 | XP_003612667.1 | 88.626 | 211 | 21 | 2 | 3 | 213 | 2 | 209 | 1.55e-125 | 364 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719360 | sp|Q8S9H7|DIV_ANTMA | 38.674 | 181 | 92 | 5 | 30 | 204 | 65 | 232 | 8.32e-26 | 105 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719360 | G7K885 | 88.626 | 211 | 21 | 2 | 3 | 213 | 2 | 209 | 7.41e-126 | 364 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0719360 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719360 | MtrunA17_Chr5g0409841 | 88.626 | 211 | 21 | 2 | 3 | 213 | 2 | 209 | 1.43e-129 | 364 |
| Msa0719360 | MtrunA17_Chr5g0440731 | 69.048 | 210 | 57 | 4 | 3 | 210 | 18 | 221 | 5.57e-87 | 259 |
| Msa0719360 | MtrunA17_Chr5g0440741 | 68.571 | 210 | 53 | 6 | 3 | 210 | 18 | 216 | 1.37e-83 | 250 |
| Msa0719360 | MtrunA17_Chr5g0409831 | 64.398 | 191 | 50 | 3 | 3 | 192 | 2 | 175 | 7.90e-74 | 223 |
| Msa0719360 | MtrunA17_Chr1g0210471 | 38.824 | 170 | 86 | 4 | 56 | 221 | 82 | 237 | 6.48e-26 | 100 |
| Msa0719360 | MtrunA17_Chr5g0436501 | 35.610 | 205 | 111 | 5 | 30 | 220 | 66 | 263 | 1.27e-25 | 100 |
| Msa0719360 | MtrunA17_Chr1g0162081 | 53.333 | 90 | 39 | 2 | 82 | 171 | 110 | 196 | 2.73e-25 | 100 |
| Msa0719360 | MtrunA17_Chr4g0062741 | 32.195 | 205 | 106 | 6 | 29 | 206 | 45 | 243 | 8.81e-24 | 96.7 |
| Msa0719360 | MtrunA17_Chr3g0104071 | 43.902 | 123 | 61 | 2 | 85 | 207 | 137 | 251 | 6.46e-23 | 94.4 |
| Msa0719360 | MtrunA17_Chr7g0241761 | 44.094 | 127 | 58 | 4 | 84 | 208 | 129 | 244 | 7.52e-23 | 94.4 |
| Msa0719360 | MtrunA17_Chr5g0429521 | 56.790 | 81 | 32 | 2 | 85 | 164 | 122 | 200 | 2.15e-22 | 92.8 |
| Msa0719360 | MtrunA17_Chr4g0055931 | 37.931 | 116 | 68 | 2 | 45 | 160 | 47 | 158 | 2.38e-21 | 90.1 |
| Msa0719360 | MtrunA17_Chr2g0331031 | 51.389 | 72 | 33 | 1 | 91 | 162 | 105 | 174 | 3.01e-20 | 87.4 |
| Msa0719360 | MtrunA17_Chr3g0135671 | 42.478 | 113 | 59 | 3 | 62 | 171 | 59 | 168 | 6.79e-20 | 84.7 |
| Msa0719360 | MtrunA17_Chr6g0488471 | 54.286 | 70 | 30 | 1 | 91 | 160 | 93 | 160 | 3.38e-19 | 84.0 |
| Msa0719360 | MtrunA17_Chr8g0365011 | 39.316 | 117 | 54 | 2 | 65 | 169 | 67 | 178 | 6.21e-19 | 83.2 |
| Msa0719360 | MtrunA17_Chr8g0389241 | 52.857 | 70 | 30 | 1 | 91 | 160 | 101 | 167 | 2.13e-18 | 81.6 |
| Msa0719360 | MtrunA17_Chr5g0415191 | 51.852 | 81 | 31 | 2 | 66 | 142 | 73 | 149 | 4.07e-18 | 81.3 |
| Msa0719360 | MtrunA17_Chr4g0059701 | 55.738 | 61 | 27 | 0 | 81 | 141 | 70 | 130 | 9.34e-18 | 79.7 |
| Msa0719360 | MtrunA17_Chr8g0364731 | 51.515 | 66 | 32 | 0 | 104 | 169 | 10 | 75 | 2.23e-17 | 77.0 |
| Msa0719360 | MtrunA17_Chr3g0092621 | 42.105 | 76 | 42 | 1 | 90 | 165 | 79 | 152 | 1.49e-16 | 74.3 |
| Msa0719360 | MtrunA17_Chr5g0432921 | 50.562 | 89 | 36 | 4 | 96 | 182 | 114 | 196 | 4.93e-16 | 74.3 |
| Msa0719360 | MtrunA17_Chr1g0192061 | 41.026 | 117 | 49 | 3 | 54 | 169 | 38 | 135 | 7.70e-16 | 72.8 |
| Msa0719360 | MtrunA17_Chr6g0452791 | 42.500 | 80 | 46 | 0 | 95 | 174 | 80 | 159 | 7.09e-15 | 70.1 |
| Msa0719360 | MtrunA17_Chr8g0370121 | 47.761 | 67 | 35 | 0 | 90 | 156 | 95 | 161 | 7.90e-15 | 71.2 |
| Msa0719360 | MtrunA17_Chr5g0432941 | 39.516 | 124 | 63 | 5 | 65 | 182 | 79 | 196 | 9.44e-15 | 70.5 |
| Msa0719360 | MtrunA17_Chr5g0409951 | 36.885 | 122 | 59 | 4 | 2 | 121 | 25 | 130 | 1.56e-13 | 67.8 |
| Msa0719360 | MtrunA17_Chr8g0370131 | 41.096 | 73 | 43 | 0 | 90 | 162 | 98 | 170 | 4.80e-13 | 65.9 |
| Msa0719360 | MtrunA17_Chr3g0113121 | 46.250 | 80 | 35 | 3 | 96 | 168 | 96 | 174 | 9.57e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719360 | AT5G08520.1 | 44.355 | 124 | 55 | 2 | 60 | 171 | 71 | 192 | 7.68e-26 | 102 |
| Msa0719360 | AT5G23650.1 | 45.299 | 117 | 59 | 2 | 55 | 171 | 83 | 194 | 7.47e-24 | 97.8 |
| Msa0719360 | AT3G10580.2 | 34.043 | 188 | 97 | 7 | 22 | 206 | 39 | 202 | 9.68e-24 | 95.9 |
| Msa0719360 | AT5G04760.1 | 53.012 | 83 | 37 | 1 | 80 | 162 | 84 | 164 | 1.56e-23 | 94.4 |
| Msa0719360 | AT3G10580.1 | 34.043 | 188 | 97 | 7 | 22 | 206 | 39 | 202 | 2.31e-23 | 95.5 |
| Msa0719360 | AT5G58900.1 | 60.000 | 75 | 27 | 2 | 91 | 164 | 137 | 209 | 6.55e-23 | 94.4 |
| Msa0719360 | AT1G49010.1 | 50.000 | 86 | 40 | 2 | 87 | 171 | 126 | 209 | 7.90e-23 | 94.4 |
| Msa0719360 | AT2G38090.1 | 53.659 | 82 | 35 | 2 | 84 | 164 | 130 | 209 | 2.62e-21 | 90.1 |
| Msa0719360 | AT3G11280.2 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 8.01e-21 | 88.2 |
| Msa0719360 | AT3G11280.1 | 40.769 | 130 | 69 | 3 | 83 | 206 | 115 | 242 | 8.01e-21 | 88.2 |
| Msa0719360 | AT5G47390.1 | 45.455 | 99 | 47 | 3 | 84 | 181 | 89 | 181 | 1.81e-20 | 88.6 |
| Msa0719360 | AT5G01200.1 | 56.000 | 75 | 30 | 2 | 91 | 164 | 142 | 214 | 2.21e-20 | 87.0 |
| Msa0719360 | AT5G61620.1 | 53.750 | 80 | 31 | 2 | 84 | 163 | 101 | 174 | 7.48e-20 | 86.3 |
| Msa0719360 | AT5G05790.2 | 37.086 | 151 | 81 | 3 | 83 | 221 | 119 | 267 | 7.72e-20 | 85.9 |
| Msa0719360 | AT5G05790.1 | 37.086 | 151 | 81 | 3 | 83 | 221 | 119 | 267 | 7.72e-20 | 85.9 |
| Msa0719360 | AT5G56840.1 | 52.857 | 70 | 32 | 1 | 91 | 160 | 87 | 155 | 1.80e-18 | 81.3 |
| Msa0719360 | AT3G16350.1 | 52.703 | 74 | 33 | 2 | 70 | 142 | 112 | 184 | 1.18e-17 | 80.9 |
| Msa0719360 | AT1G70000.1 | 60.345 | 58 | 19 | 1 | 85 | 142 | 92 | 145 | 3.79e-17 | 78.2 |
| Msa0719360 | AT1G70000.2 | 60.345 | 58 | 19 | 1 | 85 | 142 | 92 | 145 | 3.79e-17 | 78.2 |
| Msa0719360 | AT1G19000.2 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 4.96e-17 | 78.2 |
| Msa0719360 | AT1G19000.1 | 51.948 | 77 | 31 | 2 | 65 | 141 | 78 | 148 | 4.96e-17 | 78.2 |
| Msa0719360 | AT1G74840.2 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 6.25e-17 | 77.4 |
| Msa0719360 | AT1G74840.1 | 52.632 | 76 | 32 | 1 | 66 | 141 | 71 | 142 | 7.59e-17 | 77.4 |
| Msa0719360 | AT4G09450.1 | 50.000 | 74 | 35 | 1 | 90 | 163 | 86 | 157 | 1.14e-16 | 75.9 |
| Msa0719360 | AT3G10590.1 | 42.708 | 96 | 51 | 2 | 69 | 163 | 84 | 176 | 5.35e-15 | 71.2 |
Find 41 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTCTACATCTTTCACATTT+TGG | 0.117923 | 5_1:-14440932 | None:intergenic |
| TGTGATGTATAGGTTGTTTC+TGG | 0.185558 | 5_1:+14440800 | Msa0719360:intron |
| TCCAATCGGTTCTACAATTC+CGG | 0.270420 | 5_1:+14441140 | Msa0719360:CDS |
| TTAGCTTCATTACTTCCTTC+AGG | 0.334459 | 5_1:-14439949 | None:intergenic |
| TTCTCAAGTTTCTCTATATC+CGG | 0.389268 | 5_1:-14441159 | None:intergenic |
| GCATGGCTAGCAATTTGAAT+TGG | 0.406712 | 5_1:-14440891 | None:intergenic |
| AGATATTTCAAAAGAATTTG+TGG | 0.448838 | 5_1:+14440857 | Msa0719360:CDS |
| TGTGCTTTGCTTTGTCCAAT+CGG | 0.462933 | 5_1:+14441126 | Msa0719360:CDS |
| AATGAGCGGACTTCAATTCA+AGG | 0.465890 | 5_1:+14439802 | Msa0719360:CDS |
| CGGAAGGAATACCATCTTGT+TGG | 0.479644 | 5_1:-14441028 | None:intergenic |
| CAAAGAGAGGGCGTAGGGAA+AGG | 0.497543 | 5_1:+14440013 | Msa0719360:CDS |
| AAAGAGAGGGCGTAGGGAAA+GGG | 0.499642 | 5_1:+14440014 | Msa0719360:CDS |
| TTCATTAGAGTTTAGAATTG+CGG | 0.501416 | 5_1:-14439899 | None:intergenic |
| TGTTATAGGAACATGGAAGA+AGG | 0.512958 | 5_1:+14439742 | None:intergenic |
| GGAAGTAATGAAGCTAACTT+AGG | 0.518501 | 5_1:+14439955 | Msa0719360:CDS |
| GACACAAGCTTAAACAAGAA+TGG | 0.520303 | 5_1:+14440981 | Msa0719360:CDS |
| ATGTATAGGTTGTTTCTGGA+GGG | 0.542704 | 5_1:+14440804 | Msa0719360:intron |
| GACAAAGCAAAGCACAACAT+TGG | 0.543606 | 5_1:-14441119 | None:intergenic |
| GTCTGTTGCATTCCTTGAGG+AGG | 0.550846 | 5_1:-14441071 | None:intergenic |
| TGTTCCATGCTATTCTCAGA+GGG | 0.555847 | 5_1:-14439826 | None:intergenic |
| TTGTTCCATGCTATTCTCAG+AGG | 0.560192 | 5_1:-14439827 | None:intergenic |
| TAGGGAAAGGGTACATTGGA+CGG | 0.560493 | 5_1:+14440026 | Msa0719360:CDS |
| TCCGGAATTGTAGAACCGAT+TGG | 0.561152 | 5_1:-14441141 | None:intergenic |
| TGTATAGGTTGTTTCTGGAG+GGG | 0.562950 | 5_1:+14440805 | Msa0719360:intron |
| GTGAAGCAAAGAGAGGGCGT+AGG | 0.568855 | 5_1:+14440007 | Msa0719360:CDS |
| GGCGTAGGGAAAGGGTACAT+TGG | 0.572735 | 5_1:+14440022 | Msa0719360:CDS |
| CTCGCTGTTGACCAACAAGA+TGG | 0.575706 | 5_1:+14441017 | Msa0719360:CDS |
| CAAAATGAGACTCCTCCTCA+AGG | 0.583176 | 5_1:+14441059 | Msa0719360:CDS |
| GAAAGGGTACATTGGACGGA+AGG | 0.588233 | 5_1:+14440030 | Msa0719360:CDS |
| TGAAGCAAAGAGAGGGCGTA+GGG | 0.595570 | 5_1:+14440008 | Msa0719360:CDS |
| CAAGCTGAGTCAGTACAAGA+AGG | 0.604309 | 5_1:+14439979 | Msa0719360:CDS |
| GATGTATAGGTTGTTTCTGG+AGG | 0.607647 | 5_1:+14440803 | Msa0719360:intron |
| CAAGCTGAGTCAGTACCTGA+AGG | 0.616539 | 5_1:+14439934 | Msa0719360:CDS |
| CGACACTGATGTCATTGAGT+CGG | 0.619037 | 5_1:+14439867 | Msa0719360:CDS |
| ATCATATCGATTTAAATGAG+CGG | 0.624082 | 5_1:+14439788 | Msa0719360:CDS |
| TCATTTAAATCGATATGATG+AGG | 0.628741 | 5_1:-14439784 | None:intergenic |
| GGAAGTCGTGAAGCAAAGAG+AGG | 0.632062 | 5_1:+14440000 | Msa0719360:CDS |
| AGGTCCCTCTGAGAATAGCA+TGG | 0.632380 | 5_1:+14439822 | Msa0719360:CDS |
| GAAGTCGTGAAGCAAAGAGA+GGG | 0.647998 | 5_1:+14440001 | Msa0719360:CDS |
| ATTAGAGTTTAGAATTGCGG+CGG | 0.650972 | 5_1:-14439896 | None:intergenic |
| TGTGTCTGTTGCATTCCTTG+AGG | 0.673315 | 5_1:-14441074 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAAATATAAATTTTGTTT+TGG | + | chr5_1:14440146-14440165 | Msa0719360:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | - | chr5_1:14440280-14440299 | None:intergenic | 10.0% |
| !!! | TTTTTTCAATTCTATATTTT+AGG | + | chr5_1:14440286-14440305 | Msa0719360:intron | 10.0% |
| !!! | TACAAATATAAATTTTGTTT+TGG | + | chr5_1:14440146-14440165 | Msa0719360:intron | 10.0% |
| !! | TAGAATTGAAAAAAAAAATA+TGG | - | chr5_1:14440280-14440299 | None:intergenic | 10.0% |
| !!! | TTTTTTCAATTCTATATTTT+AGG | + | chr5_1:14440286-14440305 | Msa0719360:intron | 10.0% |
| !! | AAAAATATATATAACTTCCA+AGG | - | chr5_1:14440082-14440101 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | + | chr5_1:14440082-14440101 | Msa0719360:intron | 15.0% |
| !! | AAAAATATATATAACTTCCA+AGG | - | chr5_1:14440082-14440101 | None:intergenic | 15.0% |
| !!! | TGGAAGTTATATATATTTTT+TGG | + | chr5_1:14440082-14440101 | Msa0719360:intron | 15.0% |
| !! | GTAAATTAGTACATATCAAT+TGG | - | chr5_1:14440494-14440513 | None:intergenic | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | chr5_1:14440857-14440876 | Msa0719360:CDS | 20.0% |
| !! | GTAAATTAGTACATATCAAT+TGG | - | chr5_1:14440494-14440513 | None:intergenic | 20.0% |
| !! | AGATATTTCAAAAGAATTTG+TGG | + | chr5_1:14440857-14440876 | Msa0719360:CDS | 20.0% |
| ! | TCATTTAAATCGATATGATG+AGG | - | chr5_1:14439787-14439806 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | + | chr5_1:14439788-14439807 | Msa0719360:CDS | 25.0% |
| !! | TTCATTAGAGTTTAGAATTG+CGG | - | chr5_1:14439902-14439921 | None:intergenic | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | chr5_1:14440623-14440642 | Msa0719360:intron | 25.0% |
| !! | TTCTATAACTTGTGATGTAT+AGG | + | chr5_1:14440790-14440809 | Msa0719360:intron | 25.0% |
| !!! | TTGGTGGATAAAGAATTTTT+GGG | - | chr5_1:14440916-14440935 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGAATTTT+TGG | - | chr5_1:14440917-14440936 | None:intergenic | 25.0% |
| ! | TCATTTAAATCGATATGATG+AGG | - | chr5_1:14439787-14439806 | None:intergenic | 25.0% |
| !!! | ATCATATCGATTTAAATGAG+CGG | + | chr5_1:14439788-14439807 | Msa0719360:CDS | 25.0% |
| !! | TTCATTAGAGTTTAGAATTG+CGG | - | chr5_1:14439902-14439921 | None:intergenic | 25.0% |
| ! | AGATGCAAATTAATCTTTCT+AGG | + | chr5_1:14440623-14440642 | Msa0719360:intron | 25.0% |
| !! | TTCTATAACTTGTGATGTAT+AGG | + | chr5_1:14440790-14440809 | Msa0719360:intron | 25.0% |
| !!! | TTGGTGGATAAAGAATTTTT+GGG | - | chr5_1:14440916-14440935 | None:intergenic | 25.0% |
| !!! | TTTGGTGGATAAAGAATTTT+TGG | - | chr5_1:14440917-14440936 | None:intergenic | 25.0% |
| GTAAGTATTCAATCTATCCT+TGG | + | chr5_1:14440062-14440081 | Msa0719360:intron | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | - | chr5_1:14440483-14440502 | None:intergenic | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | + | chr5_1:14440684-14440703 | Msa0719360:intron | 30.0% |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | + | chr5_1:14440685-14440704 | Msa0719360:intron | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | - | chr5_1:14440935-14440954 | None:intergenic | 30.0% |
| GTAAGTATTCAATCTATCCT+TGG | + | chr5_1:14440062-14440081 | Msa0719360:intron | 30.0% | |
| ! | CATATCAATTGGTAGTTACA+AGG | - | chr5_1:14440483-14440502 | None:intergenic | 30.0% |
| ! | TTCAAGTGTTTGCATTGTTT+TGG | + | chr5_1:14440684-14440703 | Msa0719360:intron | 30.0% |
| ! | TCAAGTGTTTGCATTGTTTT+GGG | + | chr5_1:14440685-14440704 | Msa0719360:intron | 30.0% |
| ! | TCTCTACATCTTTCACATTT+TGG | - | chr5_1:14440935-14440954 | None:intergenic | 30.0% |
| ! | ATTAGAGTTTAGAATTGCGG+CGG | - | chr5_1:14439899-14439918 | None:intergenic | 35.0% |
| TTAGCTTCATTACTTCCTTC+AGG | - | chr5_1:14439952-14439971 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | + | chr5_1:14439955-14439974 | Msa0719360:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | - | chr5_1:14440255-14440274 | None:intergenic | 35.0% | |
| ! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5_1:14440800-14440819 | Msa0719360:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5_1:14440804-14440823 | Msa0719360:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | + | chr5_1:14440825-14440844 | Msa0719360:CDS | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | + | chr5_1:14440832-14440851 | Msa0719360:CDS | 35.0% | |
| !! | GGATAAAGAATTTTTGGGCA+TGG | - | chr5_1:14440911-14440930 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | - | chr5_1:14440932-14440951 | None:intergenic | 35.0% |
| GACACAAGCTTAAACAAGAA+TGG | + | chr5_1:14440981-14441000 | Msa0719360:CDS | 35.0% | |
| ! | ATTAGAGTTTAGAATTGCGG+CGG | - | chr5_1:14439899-14439918 | None:intergenic | 35.0% |
| TTAGCTTCATTACTTCCTTC+AGG | - | chr5_1:14439952-14439971 | None:intergenic | 35.0% | |
| GGAAGTAATGAAGCTAACTT+AGG | + | chr5_1:14439955-14439974 | Msa0719360:CDS | 35.0% | |
| AATGTTAACTAGTGTCCCAA+GGG | - | chr5_1:14440255-14440274 | None:intergenic | 35.0% | |
| ! | TGTGATGTATAGGTTGTTTC+TGG | + | chr5_1:14440800-14440819 | Msa0719360:intron | 35.0% |
| !! | ATGTATAGGTTGTTTCTGGA+GGG | + | chr5_1:14440804-14440823 | Msa0719360:intron | 35.0% |
| GGGCTAGAAAAATATGGTAA+GGG | + | chr5_1:14440825-14440844 | Msa0719360:CDS | 35.0% | |
| AAAAATATGGTAAGGGACGT+TGG | + | chr5_1:14440832-14440851 | Msa0719360:CDS | 35.0% | |
| !! | GGATAAAGAATTTTTGGGCA+TGG | - | chr5_1:14440911-14440930 | None:intergenic | 35.0% |
| ! | CTACATCTTTCACATTTTGG+TGG | - | chr5_1:14440932-14440951 | None:intergenic | 35.0% |
| GACACAAGCTTAAACAAGAA+TGG | + | chr5_1:14440981-14441000 | Msa0719360:CDS | 35.0% | |
| ! | AATGAGCGGACTTCAATTCA+AGG | + | chr5_1:14439802-14439821 | Msa0719360:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | - | chr5_1:14439829-14439848 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | - | chr5_1:14439830-14439849 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | - | chr5_1:14440124-14440143 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | - | chr5_1:14440125-14440144 | None:intergenic | 40.0% | |
| AATGCTTAACCAATGCCCTT+GGG | + | chr5_1:14440237-14440256 | Msa0719360:intron | 40.0% | |
| GAATGTTAACTAGTGTCCCA+AGG | - | chr5_1:14440256-14440275 | None:intergenic | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | + | chr5_1:14440414-14440433 | Msa0719360:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | - | chr5_1:14440465-14440484 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5_1:14440803-14440822 | Msa0719360:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5_1:14440805-14440824 | Msa0719360:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | + | chr5_1:14440824-14440843 | Msa0719360:CDS | 40.0% | |
| GCATGGCTAGCAATTTGAAT+TGG | - | chr5_1:14440894-14440913 | None:intergenic | 40.0% | |
| ! | AGTCTCATTTTGTTGCTCGA+CGG | - | chr5_1:14441051-14441070 | None:intergenic | 40.0% |
| GACAAAGCAAAGCACAACAT+TGG | - | chr5_1:14441122-14441141 | None:intergenic | 40.0% | |
| TGTGCTTTGCTTTGTCCAAT+CGG | + | chr5_1:14441126-14441145 | Msa0719360:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | + | chr5_1:14441140-14441159 | Msa0719360:CDS | 40.0% |
| ! | AATGAGCGGACTTCAATTCA+AGG | + | chr5_1:14439802-14439821 | Msa0719360:CDS | 40.0% |
| TGTTCCATGCTATTCTCAGA+GGG | - | chr5_1:14439829-14439848 | None:intergenic | 40.0% | |
| TTGTTCCATGCTATTCTCAG+AGG | - | chr5_1:14439830-14439849 | None:intergenic | 40.0% | |
| TTCCTTAACCATTGCCCTAA+GGG | - | chr5_1:14440124-14440143 | None:intergenic | 40.0% | |
| ATTCCTTAACCATTGCCCTA+AGG | - | chr5_1:14440125-14440144 | None:intergenic | 40.0% | |
| AATGCTTAACCAATGCCCTT+GGG | + | chr5_1:14440237-14440256 | Msa0719360:intron | 40.0% | |
| GAATGTTAACTAGTGTCCCA+AGG | - | chr5_1:14440256-14440275 | None:intergenic | 40.0% | |
| AGTGACTAGACACTCAACTT+TGG | + | chr5_1:14440414-14440433 | Msa0719360:intron | 40.0% | |
| CAAGGATGTTGATCTACATG+CGG | - | chr5_1:14440465-14440484 | None:intergenic | 40.0% | |
| !! | GATGTATAGGTTGTTTCTGG+AGG | + | chr5_1:14440803-14440822 | Msa0719360:intron | 40.0% |
| !! | TGTATAGGTTGTTTCTGGAG+GGG | + | chr5_1:14440805-14440824 | Msa0719360:intron | 40.0% |
| GGGGCTAGAAAAATATGGTA+AGG | + | chr5_1:14440824-14440843 | Msa0719360:CDS | 40.0% | |
| GCATGGCTAGCAATTTGAAT+TGG | - | chr5_1:14440894-14440913 | None:intergenic | 40.0% | |
| ! | AGTCTCATTTTGTTGCTCGA+CGG | - | chr5_1:14441051-14441070 | None:intergenic | 40.0% |
| GACAAAGCAAAGCACAACAT+TGG | - | chr5_1:14441122-14441141 | None:intergenic | 40.0% | |
| TGTGCTTTGCTTTGTCCAAT+CGG | + | chr5_1:14441126-14441145 | Msa0719360:CDS | 40.0% | |
| ! | TCCAATCGGTTCTACAATTC+CGG | + | chr5_1:14441140-14441159 | Msa0719360:CDS | 40.0% |
| CGACACTGATGTCATTGAGT+CGG | + | chr5_1:14439867-14439886 | Msa0719360:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | + | chr5_1:14439979-14439998 | Msa0719360:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5_1:14440001-14440020 | Msa0719360:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5_1:14440026-14440045 | Msa0719360:CDS | 45.0% |
| TCTTGCCAACAAATGCCCTT+AGG | + | chr5_1:14440106-14440125 | Msa0719360:intron | 45.0% | |
| CTTGCCAACAAATGCCCTTA+GGG | + | chr5_1:14440107-14440126 | Msa0719360:intron | 45.0% | |
| !! | ATTGCCCTAAGGGCATTTGT+TGG | - | chr5_1:14440114-14440133 | None:intergenic | 45.0% |
| AACAAATGCCCTTAGGGCAA+TGG | + | chr5_1:14440113-14440132 | Msa0719360:intron | 45.0% | |
| GAATGCTTAACCAATGCCCT+TGG | + | chr5_1:14440236-14440255 | Msa0719360:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | + | chr5_1:14440819-14440838 | Msa0719360:CDS | 45.0% | |
| CGGAAGGAATACCATCTTGT+TGG | - | chr5_1:14441031-14441050 | None:intergenic | 45.0% | |
| ! | TCATTTTGTTGCTCGACGGA+AGG | - | chr5_1:14441047-14441066 | None:intergenic | 45.0% |
| CAAAATGAGACTCCTCCTCA+AGG | + | chr5_1:14441059-14441078 | Msa0719360:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | - | chr5_1:14441077-14441096 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | - | chr5_1:14441144-14441163 | None:intergenic | 45.0% | |
| CGACACTGATGTCATTGAGT+CGG | + | chr5_1:14439867-14439886 | Msa0719360:CDS | 45.0% | |
| CAAGCTGAGTCAGTACAAGA+AGG | + | chr5_1:14439979-14439998 | Msa0719360:CDS | 45.0% | |
| GAAGTCGTGAAGCAAAGAGA+GGG | + | chr5_1:14440001-14440020 | Msa0719360:CDS | 45.0% | |
| ! | TAGGGAAAGGGTACATTGGA+CGG | + | chr5_1:14440026-14440045 | Msa0719360:CDS | 45.0% |
| TCTTGCCAACAAATGCCCTT+AGG | + | chr5_1:14440106-14440125 | Msa0719360:intron | 45.0% | |
| CTTGCCAACAAATGCCCTTA+GGG | + | chr5_1:14440107-14440126 | Msa0719360:intron | 45.0% | |
| !! | ATTGCCCTAAGGGCATTTGT+TGG | - | chr5_1:14440114-14440133 | None:intergenic | 45.0% |
| AACAAATGCCCTTAGGGCAA+TGG | + | chr5_1:14440113-14440132 | Msa0719360:intron | 45.0% | |
| GAATGCTTAACCAATGCCCT+TGG | + | chr5_1:14440236-14440255 | Msa0719360:intron | 45.0% | |
| CTGGAGGGGCTAGAAAAATA+TGG | + | chr5_1:14440819-14440838 | Msa0719360:CDS | 45.0% | |
| CGGAAGGAATACCATCTTGT+TGG | - | chr5_1:14441031-14441050 | None:intergenic | 45.0% | |
| ! | TCATTTTGTTGCTCGACGGA+AGG | - | chr5_1:14441047-14441066 | None:intergenic | 45.0% |
| CAAAATGAGACTCCTCCTCA+AGG | + | chr5_1:14441059-14441078 | Msa0719360:CDS | 45.0% | |
| TGTGTCTGTTGCATTCCTTG+AGG | - | chr5_1:14441077-14441096 | None:intergenic | 45.0% | |
| TCCGGAATTGTAGAACCGAT+TGG | - | chr5_1:14441144-14441163 | None:intergenic | 45.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | + | chr5_1:14439822-14439841 | Msa0719360:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | + | chr5_1:14439934-14439953 | Msa0719360:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5_1:14440000-14440019 | Msa0719360:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5_1:14440008-14440027 | Msa0719360:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5_1:14440014-14440033 | Msa0719360:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | + | chr5_1:14440030-14440049 | Msa0719360:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | + | chr5_1:14440119-14440138 | Msa0719360:intron | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5_1:14440249-14440268 | None:intergenic | 50.0% |
| CTCGCTGTTGACCAACAAGA+TGG | + | chr5_1:14441017-14441036 | Msa0719360:CDS | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | - | chr5_1:14441074-14441093 | None:intergenic | 50.0% | |
| ! | AGGTCCCTCTGAGAATAGCA+TGG | + | chr5_1:14439822-14439841 | Msa0719360:CDS | 50.0% |
| CAAGCTGAGTCAGTACCTGA+AGG | + | chr5_1:14439934-14439953 | Msa0719360:CDS | 50.0% | |
| GGAAGTCGTGAAGCAAAGAG+AGG | + | chr5_1:14440000-14440019 | Msa0719360:CDS | 50.0% | |
| ! | TGAAGCAAAGAGAGGGCGTA+GGG | + | chr5_1:14440008-14440027 | Msa0719360:CDS | 50.0% |
| ! | AAAGAGAGGGCGTAGGGAAA+GGG | + | chr5_1:14440014-14440033 | Msa0719360:CDS | 50.0% |
| ! | GAAAGGGTACATTGGACGGA+AGG | + | chr5_1:14440030-14440049 | Msa0719360:CDS | 50.0% |
| TGCCCTTAGGGCAATGGTTA+AGG | + | chr5_1:14440119-14440138 | Msa0719360:intron | 50.0% | |
| ! | AACTAGTGTCCCAAGGGCAT+TGG | - | chr5_1:14440249-14440268 | None:intergenic | 50.0% |
| CTCGCTGTTGACCAACAAGA+TGG | + | chr5_1:14441017-14441036 | Msa0719360:CDS | 50.0% | |
| GTCTGTTGCATTCCTTGAGG+AGG | - | chr5_1:14441074-14441093 | None:intergenic | 50.0% | |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5_1:14440007-14440026 | Msa0719360:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5_1:14440013-14440032 | Msa0719360:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5_1:14440022-14440041 | Msa0719360:CDS | 55.0% |
| ! | GTGAAGCAAAGAGAGGGCGT+AGG | + | chr5_1:14440007-14440026 | Msa0719360:CDS | 55.0% |
| ! | CAAAGAGAGGGCGTAGGGAA+AGG | + | chr5_1:14440013-14440032 | Msa0719360:CDS | 55.0% |
| ! | GGCGTAGGGAAAGGGTACAT+TGG | + | chr5_1:14440022-14440041 | Msa0719360:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 14439754 | 14441178 | 14439754 | ID=Msa0719360;Name=Msa0719360 |
| chr5_1 | mRNA | 14439754 | 14441178 | 14439754 | ID=Msa0719360-mRNA-1;Parent=Msa0719360;Name=Msa0719360-mRNA-1;_AED=0.03;_eAED=0.09;_QI=0|0|0|1|1|1|2|0|224 |
| chr5_1 | exon | 14439754 | 14440061 | 14439754 | ID=Msa0719360-mRNA-1:exon:5668;Parent=Msa0719360-mRNA-1 |
| chr5_1 | exon | 14440812 | 14441178 | 14440812 | ID=Msa0719360-mRNA-1:exon:5669;Parent=Msa0719360-mRNA-1 |
| chr5_1 | CDS | 14439754 | 14440061 | 14439754 | ID=Msa0719360-mRNA-1:cds;Parent=Msa0719360-mRNA-1 |
| chr5_1 | CDS | 14440812 | 14441178 | 14440812 | ID=Msa0719360-mRNA-1:cds;Parent=Msa0719360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
