Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719800 | XP_003612774.2 | 94.527 | 402 | 22 | 0 | 1 | 402 | 1 | 402 | 0.0 | 788 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719800 | sp|Q501B2|BZP16_ARATH | 62.683 | 410 | 128 | 9 | 1 | 396 | 1 | 399 | 3.90e-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719800 | G7KB04 | 94.527 | 402 | 22 | 0 | 1 | 402 | 1 | 402 | 0.0 | 788 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0719800 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719800 | MtrunA17_Chr5g0410531 | 94.527 | 402 | 22 | 0 | 1 | 402 | 1 | 402 | 0.0 | 788 |
| Msa0719800 | MtrunA17_Chr8g0369161 | 76.250 | 400 | 82 | 5 | 1 | 390 | 1 | 397 | 0.0 | 598 |
| Msa0719800 | MtrunA17_Chr7g0275321 | 38.542 | 384 | 191 | 16 | 1 | 375 | 1 | 348 | 9.57e-60 | 199 |
| Msa0719800 | MtrunA17_Chr8g0373571 | 37.468 | 387 | 170 | 17 | 1 | 375 | 1 | 327 | 2.11e-51 | 175 |
| Msa0719800 | MtrunA17_Chr8g0347741 | 35.610 | 410 | 200 | 15 | 1 | 398 | 1 | 358 | 1.09e-45 | 162 |
| Msa0719800 | MtrunA17_Chr1g0162721 | 34.021 | 97 | 62 | 1 | 286 | 380 | 198 | 294 | 1.25e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719800 | AT2G35530.1 | 62.683 | 410 | 128 | 9 | 1 | 396 | 1 | 399 | 3.97e-165 | 469 |
| Msa0719800 | AT1G32150.1 | 62.087 | 393 | 108 | 12 | 1 | 379 | 1 | 366 | 6.07e-150 | 430 |
| Msa0719800 | AT4G36730.1 | 37.568 | 370 | 138 | 14 | 14 | 375 | 5 | 289 | 2.25e-44 | 156 |
| Msa0719800 | AT4G36730.2 | 38.211 | 369 | 135 | 15 | 14 | 375 | 5 | 287 | 2.44e-43 | 154 |
| Msa0719800 | AT2G46270.1 | 35.200 | 375 | 167 | 15 | 19 | 375 | 10 | 326 | 7.88e-43 | 154 |
| Msa0719800 | AT2G46270.3 | 35.200 | 375 | 167 | 15 | 19 | 375 | 10 | 326 | 7.88e-43 | 154 |
| Msa0719800 | AT2G46270.2 | 30.027 | 373 | 166 | 15 | 19 | 375 | 10 | 303 | 3.38e-28 | 114 |
| Msa0719800 | AT2G46270.4 | 30.027 | 373 | 166 | 15 | 19 | 375 | 10 | 303 | 3.38e-28 | 114 |
| Msa0719800 | AT4G01120.1 | 42.500 | 120 | 59 | 2 | 267 | 378 | 202 | 319 | 1.65e-17 | 83.6 |
Find 173 sgRNAs with CRISPR-Local
Find 466 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTGACTGGGCCAGCTTTC+AGG | 0.108461 | 5_1:+15279982 | Msa0719800:CDS |
| GGTGCTCCTGGAGCTGTTTC+TGG | 0.143125 | 5_1:+15283100 | Msa0719800:CDS |
| ATTACCACTCAAAGAGAAAT+TGG | 0.187816 | 5_1:-15279232 | None:intergenic |
| TAAATATAGGAATGGATTAT+TGG | 0.223124 | 5_1:+15283137 | Msa0719800:CDS |
| GCGTAGGAAGAAGGTGAATT+TGG | 0.230889 | 5_1:-15279127 | None:intergenic |
| GTTGCGGGAGGGGTGGTTAC+TGG | 0.250650 | 5_1:+15283217 | Msa0719800:CDS |
| ACCTGGACACCCCACATATA+AGG | 0.260255 | 5_1:-15280143 | None:intergenic |
| TTCACTCATATATAAAAGTA+TGG | 0.270961 | 5_1:+15279770 | Msa0719800:exon |
| TCAGCGCATACTTCACAAAA+TGG | 0.279474 | 5_1:+15283013 | Msa0719800:CDS |
| AAAGACGAAAGCAGTCTAAT+AGG | 0.280364 | 5_1:+15284307 | Msa0719800:CDS |
| GCAAGAGCGCGATCTTGTTT+TGG | 0.326406 | 5_1:+15285240 | Msa0719800:three_prime_UTR |
| CGCGCTCTTGCTATTGAGTT+AGG | 0.337803 | 5_1:-15285228 | None:intergenic |
| CAGCACATGATGCCTCCTTA+TGG | 0.341092 | 5_1:+15281558 | Msa0719800:intron |
| GGTAGTTTGAACATGATTAC+AGG | 0.349225 | 5_1:+15282009 | Msa0719800:CDS |
| TTAAAAGTAAAAGACAAATT+AGG | 0.352751 | 5_1:-15285344 | None:intergenic |
| ACAGTAGGAGGGGTCAAAAT+TGG | 0.356551 | 5_1:-15279169 | None:intergenic |
| CCTATATTTAAGTTTGTTGC+GGG | 0.356569 | 5_1:-15283124 | None:intergenic |
| TTTCTGCATGAATAATTTAT+CGG | 0.361229 | 5_1:+15285495 | Msa0719800:three_prime_UTR |
| TACCTTGAGAGCTGCATTCT+CGG | 0.363000 | 5_1:-15284564 | None:intergenic |
| CCCTTATATGTGGGGTGTCC+AGG | 0.365670 | 5_1:+15280142 | Msa0719800:CDS |
| ATAGGGCTCTCAATTGAAAT+CGG | 0.375431 | 5_1:+15282822 | Msa0719800:intron |
| CGTAGGAAGAAGGTGAATTT+GGG | 0.375751 | 5_1:-15279126 | None:intergenic |
| AAAAGGTCAAAAGGAAGTTT+AGG | 0.381702 | 5_1:+15281988 | Msa0719800:CDS |
| GGTTGTGCAGGGTGGTCATT+AGG | 0.383561 | 5_1:+15285177 | Msa0719800:CDS |
| GGAGCACCACTTGCCGAGAT+AGG | 0.387899 | 5_1:-15283085 | None:intergenic |
| AATAGGAACGAAAATCTAAC+TGG | 0.388651 | 5_1:+15278933 | None:intergenic |
| TAATGCGATTTACTTCTAAT+CGG | 0.403981 | 5_1:-15284517 | None:intergenic |
| ATCTCGGCAAGTGGTGCTCC+TGG | 0.408534 | 5_1:+15283088 | Msa0719800:CDS |
| TTCTGCATGAATAATTTATC+GGG | 0.408970 | 5_1:+15285496 | Msa0719800:three_prime_UTR |
| GTCTACCACAGTTGCGGGAG+GGG | 0.409011 | 5_1:+15283207 | Msa0719800:CDS |
| GTAGGCATGGCATAAGGATA+TGG | 0.411726 | 5_1:-15281749 | None:intergenic |
| ACAGGTGAACCATCTCAAAA+TGG | 0.414873 | 5_1:+15282986 | Msa0719800:intron |
| TTACCACTCAAAGAGAAATT+GGG | 0.415228 | 5_1:-15279231 | None:intergenic |
| AAGACGAAAGCAGTCTAATA+GGG | 0.416680 | 5_1:+15284308 | Msa0719800:CDS |
| GTGCCGTCTACCACAGTTGC+GGG | 0.429081 | 5_1:+15283202 | Msa0719800:CDS |
| TATGCCTCCACATGGATTCA+TGG | 0.429306 | 5_1:+15280100 | Msa0719800:CDS |
| GGATCCTTCAGAGCTTGATC+TGG | 0.429740 | 5_1:-15279209 | None:intergenic |
| CATCACCTGCTTGCGCAACC+TGG | 0.437317 | 5_1:-15284346 | None:intergenic |
| CTCAATTGAAATCGGGAGAC+AGG | 0.442118 | 5_1:+15282830 | Msa0719800:CDS |
| CCCGCAACAAACTTAAATAT+AGG | 0.444449 | 5_1:+15283124 | Msa0719800:CDS |
| CCTGGACACCCCACATATAA+GGG | 0.445518 | 5_1:-15280142 | None:intergenic |
| ACCTGAAAGCTGGCCCAGTC+AGG | 0.449030 | 5_1:-15279983 | None:intergenic |
| CCACATATAAGGGTGAGCTT+GGG | 0.451082 | 5_1:-15280132 | None:intergenic |
| GAGGCCTCAGCAATACCGTT+TGG | 0.453005 | 5_1:-15281773 | None:intergenic |
| CCCACATATAAGGGTGAGCT+TGG | 0.455251 | 5_1:-15280133 | None:intergenic |
| CAGCGCATACTTCACAAAAT+GGG | 0.455379 | 5_1:+15283014 | Msa0719800:CDS |
| GGCACCTTTCCGCGGAGAGC+GGG | 0.455864 | 5_1:-15283184 | None:intergenic |
| GGGAATCTGCTCGGAGATCC+AGG | 0.457769 | 5_1:+15284328 | Msa0719800:CDS |
| TCCTATATTTAAGTTTGTTG+CGG | 0.459038 | 5_1:-15283125 | None:intergenic |
| ACAATATATATTAATGTAGC+TGG | 0.462375 | 5_1:+15285455 | Msa0719800:three_prime_UTR |
| TAAGATTGAATTGATGAGAA+GGG | 0.463946 | 5_1:-15279059 | None:intergenic |
| TTACCAATCAAAAGGTCAAA+AGG | 0.467960 | 5_1:+15281979 | Msa0719800:CDS |
| TTAATCTACAGGAGAGACTT+GGG | 0.468089 | 5_1:+15285095 | Msa0719800:intron |
| CCATCAGTTTCCATGCTGGC+AGG | 0.471564 | 5_1:-15281931 | None:intergenic |
| ACAGCGGGGACATCTGCTAA+TGG | 0.473912 | 5_1:+15282054 | Msa0719800:CDS |
| TTTAATCTACAGGAGAGACT+TGG | 0.481648 | 5_1:+15285094 | Msa0719800:intron |
| ATGGGGATACATTGCAACAT+AGG | 0.481817 | 5_1:-15281595 | None:intergenic |
| CCCAAGCTCACCCTTATATG+TGG | 0.482879 | 5_1:+15280132 | Msa0719800:CDS |
| ATTGAAATCGGGAGACAGGC+TGG | 0.486147 | 5_1:+15282834 | Msa0719800:CDS |
| TATGTCTGTCATTCCTATCT+CGG | 0.487110 | 5_1:+15283072 | Msa0719800:CDS |
| CCAAGCTCACCCTTATATGT+GGG | 0.487502 | 5_1:+15280133 | Msa0719800:CDS |
| TCAGTCACAACTTTGGCTAC+AGG | 0.487817 | 5_1:+15283258 | Msa0719800:CDS |
| AGAAATTGAGCGTAGGAAGA+AGG | 0.489937 | 5_1:-15279136 | None:intergenic |
| GTTTGATTAACCACTGTATG+AGG | 0.491464 | 5_1:-15283049 | None:intergenic |
| AGCAGTGAATATACAGTAGG+AGG | 0.491527 | 5_1:-15279181 | None:intergenic |
| TGGACAGACAGAGGTTGTGC+AGG | 0.495031 | 5_1:+15285165 | Msa0719800:CDS |
| GGGTGGTTACTGGTGGATCA+CGG | 0.495283 | 5_1:+15283227 | Msa0719800:CDS |
| TAAAAGACAAATTAGGAATG+AGG | 0.496924 | 5_1:-15285337 | None:intergenic |
| TAGGGCTCTCAATTGAAATC+GGG | 0.497622 | 5_1:+15282823 | Msa0719800:intron |
| GCGGGGCCAGAAACAGCTCC+AGG | 0.501668 | 5_1:-15283106 | None:intergenic |
| CTGGAACAGTTAATCCTGAC+TGG | 0.502822 | 5_1:+15279969 | Msa0719800:CDS |
| GGTGGTTACTGGTGGATCAC+GGG | 0.504171 | 5_1:+15283228 | Msa0719800:CDS |
| GTCAATTCAACCTGCGACGT+TGG | 0.508714 | 5_1:-15279846 | None:intergenic |
| AATGAACATGGTAAAACAGC+GGG | 0.512685 | 5_1:+15282039 | Msa0719800:CDS |
| GAGATCCAGGTTGCGCAAGC+AGG | 0.513179 | 5_1:+15284341 | Msa0719800:CDS |
| CTCTCCAGATCAAGCTCTGA+AGG | 0.513719 | 5_1:+15279205 | Msa0719800:five_prime_UTR |
| TGCTCATCCATCCATGCCTC+CGG | 0.520704 | 5_1:+15281629 | Msa0719800:CDS |
| GAGAGACTTGGGGAACAACC+AGG | 0.524711 | 5_1:+15285106 | Msa0719800:CDS |
| GGTGAAAGTGGAAGTTATGA+AGG | 0.527913 | 5_1:+15282617 | Msa0719800:CDS |
| ATGATTACCGGAGGCATGGA+TGG | 0.528642 | 5_1:-15281636 | None:intergenic |
| GCGGGAATGTTGGATGAAGT+TGG | 0.529481 | 5_1:-15283166 | None:intergenic |
| GCGATTTACTTCTAATCGGA+GGG | 0.529909 | 5_1:-15284513 | None:intergenic |
| GGAACTCGTGGGTCGTCGTA+CGG | 0.531318 | 5_1:-15278969 | None:intergenic |
| TGGGGATACATTGCAACATA+GGG | 0.533477 | 5_1:-15281594 | None:intergenic |
| AGTAGCAGTGAATATACAGT+AGG | 0.533650 | 5_1:-15279184 | None:intergenic |
| AGTTATGAAGGTACTAGTGA+AGG | 0.533947 | 5_1:+15282629 | Msa0719800:CDS |
| TAACTTTCACACTGAAAATG+AGG | 0.537434 | 5_1:-15285416 | None:intergenic |
| ATAGTGTTCAGTCACAACTT+TGG | 0.537639 | 5_1:+15283251 | Msa0719800:CDS |
| AAAAGACAAATTAGGAATGA+GGG | 0.537644 | 5_1:-15285336 | None:intergenic |
| CCTTCGACCACCACTAGCAC+TGG | 0.540309 | 5_1:+15279950 | Msa0719800:CDS |
| TTTGGAGTAGGCATGGCATA+AGG | 0.540351 | 5_1:-15281755 | None:intergenic |
| CAAATGTGTTGATCGTTCCC+TGG | 0.541615 | 5_1:-15285124 | None:intergenic |
| TGCGATTTACTTCTAATCGG+AGG | 0.542152 | 5_1:-15284514 | None:intergenic |
| TCAACCTGCGACGTTGGTGG+CGG | 0.543028 | 5_1:-15279840 | None:intergenic |
| GGATGTGGTGGAGTACCATA+AGG | 0.547567 | 5_1:-15281573 | None:intergenic |
| CGTCTACCACAGTTGCGGGA+GGG | 0.548049 | 5_1:+15283206 | Msa0719800:CDS |
| TTTACCATCAGTTTCCATGC+TGG | 0.549293 | 5_1:-15281935 | None:intergenic |
| ATCCCCAATTTCTCTTTGAG+TGG | 0.549840 | 5_1:+15279228 | Msa0719800:five_prime_UTR |
| AACAATGATTACCGGAGGCA+TGG | 0.549906 | 5_1:-15281640 | None:intergenic |
| GGGAAACACTCCTGCCAGCA+TGG | 0.550438 | 5_1:+15281921 | Msa0719800:intron |
| TATGCCATGCCTACTCCAAA+CGG | 0.550779 | 5_1:+15281758 | Msa0719800:CDS |
| TCACTCATATATAAAAGTAT+GGG | 0.552356 | 5_1:+15279771 | Msa0719800:exon |
| ATGAATCCATGTGGAGGCAT+AGG | 0.552720 | 5_1:-15280098 | None:intergenic |
| ACTCGTGGGTCGTCGTACGG+TGG | 0.552979 | 5_1:-15278966 | None:intergenic |
| TTAAGATTGAATTGATGAGA+AGG | 0.554419 | 5_1:-15279060 | None:intergenic |
| GTTAATGTGTTTGTTGTTCG+CGG | 0.554514 | 5_1:-15278995 | None:intergenic |
| TTCCGAGAATGCAGCTCTCA+AGG | 0.555646 | 5_1:+15284562 | Msa0719800:CDS |
| TGGATTTGCAGTGGTGAAAG+TGG | 0.559926 | 5_1:+15282605 | Msa0719800:intron |
| GACACCGCCACCAACGTCGC+AGG | 0.560468 | 5_1:+15279836 | Msa0719800:CDS |
| GCAGTGAATATACAGTAGGA+GGG | 0.561436 | 5_1:-15279180 | None:intergenic |
| TCCGCGGAGAGCGGGAATGT+TGG | 0.562352 | 5_1:-15283176 | None:intergenic |
| CATTCCCGCTCTCCGCGGAA+AGG | 0.563820 | 5_1:+15283180 | Msa0719800:CDS |
| CCGTCTACCACAGTTGCGGG+AGG | 0.565964 | 5_1:+15283205 | Msa0719800:CDS |
| GCGGGAGGGGTGGTTACTGG+TGG | 0.570321 | 5_1:+15283220 | Msa0719800:CDS |
| TACCACAGTTGCGGGAGGGG+TGG | 0.570983 | 5_1:+15283210 | Msa0719800:CDS |
| CTCGTGGGTCGTCGTACGGT+GGG | 0.572804 | 5_1:-15278965 | None:intergenic |
| AAGTATGGGCAATAATGAGA+TGG | 0.572969 | 5_1:+15279785 | Msa0719800:exon |
| CACATATAAGGGTGAGCTTG+GGG | 0.573392 | 5_1:-15280131 | None:intergenic |
| AAGATTGAATTGATGAGAAG+GGG | 0.573809 | 5_1:-15279058 | None:intergenic |
| TGGTAAACCTCCTGAAGTGA+AGG | 0.575107 | 5_1:+15281951 | Msa0719800:CDS |
| AATTCAACCTGCGACGTTGG+TGG | 0.576959 | 5_1:-15279843 | None:intergenic |
| TACATTGCAACATAGGGATG+TGG | 0.580807 | 5_1:-15281588 | None:intergenic |
| CTAATGGAATTCACTCAAAG+AGG | 0.581180 | 5_1:+15282070 | Msa0719800:CDS |
| ATTAACTGTTCCAGTGCTAG+TGG | 0.581363 | 5_1:-15279960 | None:intergenic |
| AACAAACTTAAATATAGGAA+TGG | 0.588482 | 5_1:+15283129 | Msa0719800:CDS |
| GGATAAAACAGCAAAAGAGA+AGG | 0.588848 | 5_1:+15279806 | Msa0719800:CDS |
| CGGCACCTTTCCGCGGAGAG+CGG | 0.591194 | 5_1:-15283185 | None:intergenic |
| AGCGCATACTTCACAAAATG+GGG | 0.595594 | 5_1:+15283015 | Msa0719800:CDS |
| CAAGCTCACCCTTATATGTG+GGG | 0.599058 | 5_1:+15280134 | Msa0719800:CDS |
| TACCACTCAAAGAGAAATTG+GGG | 0.600205 | 5_1:-15279230 | None:intergenic |
| TAACCCCATTCAAAACAACA+TGG | 0.603445 | 5_1:+15285364 | Msa0719800:three_prime_UTR |
| AACCACCCCTCCCGCAACTG+TGG | 0.605113 | 5_1:-15283212 | None:intergenic |
| AACTGTTCCAGTGCTAGTGG+TGG | 0.605841 | 5_1:-15279957 | None:intergenic |
| TCAGCAATACCGTTTGGAGT+AGG | 0.605905 | 5_1:-15281767 | None:intergenic |
| CCTCCCGCAACTGTGGTAGA+CGG | 0.610873 | 5_1:-15283205 | None:intergenic |
| GATGAGCATATATGCCACCA+TGG | 0.610974 | 5_1:-15281614 | None:intergenic |
| GTCATTCCTATCTCGGCAAG+TGG | 0.611010 | 5_1:+15283079 | Msa0719800:CDS |
| ATTGCAACATAGGGATGTGG+TGG | 0.613657 | 5_1:-15281585 | None:intergenic |
| TGTGTTTGTTGTTCGCGGAG+AGG | 0.619030 | 5_1:-15278990 | None:intergenic |
| AGATTGAATTGATGAGAAGG+GGG | 0.621107 | 5_1:-15279057 | None:intergenic |
| GTAGTTTGAACATGATTACA+GGG | 0.624590 | 5_1:+15282010 | Msa0719800:CDS |
| TGTAACGACACTCAACAAAG+TGG | 0.625936 | 5_1:+15285145 | Msa0719800:CDS |
| CCTGCCAGCATGGAAACTGA+TGG | 0.625964 | 5_1:+15281931 | Msa0719800:CDS |
| TGGAACAGTTAATCCTGACT+GGG | 0.626947 | 5_1:+15279970 | Msa0719800:CDS |
| ATGAGCATATATGCCACCAT+GGG | 0.627162 | 5_1:-15281613 | None:intergenic |
| TACTCCAAACGGTATTGCTG+AGG | 0.632684 | 5_1:+15281769 | Msa0719800:CDS |
| AATACCGTTTGGAGTAGGCA+TGG | 0.637188 | 5_1:-15281762 | None:intergenic |
| TGTTCGCGGAGAGGAACTCG+TGG | 0.639993 | 5_1:-15278981 | None:intergenic |
| TTTGACACGAAATATAACTC+AGG | 0.643259 | 5_1:-15285541 | None:intergenic |
| GGTGCCGTCTACCACAGTTG+CGG | 0.643744 | 5_1:+15283201 | Msa0719800:CDS |
| CCAGTGCTAGTGGTGGTCGA+AGG | 0.643910 | 5_1:-15279950 | None:intergenic |
| GGACAGACAGAGGTTGTGCA+GGG | 0.645924 | 5_1:+15285166 | Msa0719800:CDS |
| ACTTAATGCACCTCATACAG+TGG | 0.648863 | 5_1:+15283039 | Msa0719800:CDS |
| TAATCTACAGGAGAGACTTG+GGG | 0.650587 | 5_1:+15285096 | Msa0719800:intron |
| TATTCTCCTATGCCTCCACA+TGG | 0.653498 | 5_1:+15280092 | Msa0719800:CDS |
| GTTCGCGGAGAGGAACTCGT+GGG | 0.656197 | 5_1:-15278980 | None:intergenic |
| TGGTAGACGGCACCTTTCCG+CGG | 0.657685 | 5_1:-15283192 | None:intergenic |
| TATGTTGCAATGTATCCCCA+TGG | 0.658872 | 5_1:+15281597 | Msa0719800:CDS |
| GACGCCATGAATCCATGTGG+AGG | 0.660400 | 5_1:-15280104 | None:intergenic |
| TCAACAAAGTGGACAGACAG+AGG | 0.662687 | 5_1:+15285156 | Msa0719800:CDS |
| AGAGACTTGGGGAACAACCA+GGG | 0.664305 | 5_1:+15285107 | Msa0719800:CDS |
| CTATATTTAAGTTTGTTGCG+GGG | 0.664908 | 5_1:-15283123 | None:intergenic |
| TCCAACATTCCCGCTCTCCG+CGG | 0.674208 | 5_1:+15283175 | Msa0719800:CDS |
| AGTCTAATAGGGAATCTGCT+CGG | 0.674381 | 5_1:+15284319 | Msa0719800:CDS |
| CAGTGAATATACAGTAGGAG+GGG | 0.682502 | 5_1:-15279179 | None:intergenic |
| TGTGGTGGAGTACCATAAGG+AGG | 0.685282 | 5_1:-15281570 | None:intergenic |
| TAATGAACATGGTAAAACAG+CGG | 0.688598 | 5_1:+15282038 | Msa0719800:CDS |
| CAGACAGAGGTTGTGCAGGG+TGG | 0.709413 | 5_1:+15285169 | Msa0719800:CDS |
| GCGCATACTTCACAAAATGG+GGG | 0.717939 | 5_1:+15283016 | Msa0719800:CDS |
| CTTGACGCCATGAATCCATG+TGG | 0.723886 | 5_1:-15280107 | None:intergenic |
| TGAGCATATATGCCACCATG+GGG | 0.728314 | 5_1:-15281612 | None:intergenic |
| GTTGCAATGTATCCCCATGG+TGG | 0.737517 | 5_1:+15281600 | Msa0719800:CDS |
| ATGAACATGGTAAAACAGCG+GGG | 0.756524 | 5_1:+15282040 | Msa0719800:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTAATATTAAATATAT+TGG | + | chr5_1:15284783-15284802 | Msa0719800:intron | 0.0% |
| !!! | AAATTATAAGTTTTTAGATA+GGG | + | chr5_1:15280373-15280392 | Msa0719800:intron | 10.0% |
| !! | AAAATATCATAAATATAAAG+TGG | + | chr5_1:15280916-15280935 | Msa0719800:intron | 10.0% |
| !!! | TAAAATCAAAATTGGATTTT+TGG | + | chr5_1:15279446-15279465 | Msa0719800:intron | 15.0% |
| !! | AATATTTATATTGCATGTAT+AGG | - | chr5_1:15279553-15279572 | None:intergenic | 15.0% |
| !!! | GTTTTTAACTAGAATTTTTT+TGG | + | chr5_1:15280004-15280023 | Msa0719800:intron | 15.0% |
| !!! | ACACTATTTTCTATTATTTA+CGG | + | chr5_1:15280028-15280047 | Msa0719800:intron | 15.0% |
| !!! | TCTAAATTATTTTCAACATT+AGG | - | chr5_1:15280313-15280332 | None:intergenic | 15.0% |
| !!! | GAAATTATAAGTTTTTAGAT+AGG | + | chr5_1:15280372-15280391 | Msa0719800:intron | 15.0% |
| !! | AATGAGTAATAAATAGTAAA+GGG | + | chr5_1:15280708-15280727 | Msa0719800:intron | 15.0% |
| !!! | TTGTAAATTGACTTATAATT+TGG | + | chr5_1:15280767-15280786 | Msa0719800:intron | 15.0% |
| !!! | TGTAAATTGACTTATAATTT+GGG | + | chr5_1:15280768-15280787 | Msa0719800:intron | 15.0% |
| !! | TTAATTAACCAAATAAAACA+CGG | - | chr5_1:15281523-15281542 | None:intergenic | 15.0% |
| !! | AATCAGATAAAAATGTTAAA+AGG | - | chr5_1:15282347-15282366 | None:intergenic | 15.0% |
| !!! | TTTTGTATTTGTGTTTTTAT+AGG | + | chr5_1:15282804-15282823 | Msa0719800:intron | 15.0% |
| !!! | TTTGTATTTGTGTTTTTATA+GGG | + | chr5_1:15282805-15282824 | Msa0719800:intron | 15.0% |
| !! | CTGTAAAAGATTATTAATAA+TGG | - | chr5_1:15284226-15284245 | None:intergenic | 15.0% |
| !!! | ATATTTTCTGATTAACTTTT+AGG | + | chr5_1:15284263-15284282 | Msa0719800:intron | 15.0% |
| !! | AAAAATGAGATTAAATCTTT+AGG | - | chr5_1:15285048-15285067 | None:intergenic | 15.0% |
| !! | TTAAAAGTAAAAGACAAATT+AGG | - | chr5_1:15285347-15285366 | None:intergenic | 15.0% |
| !!! | ATAATTGAATTTGCTATGTT+AGG | + | chr5_1:15279404-15279423 | Msa0719800:intron | 20.0% |
| !! | ACATAGAGTAAAATCAAAAT+TGG | + | chr5_1:15279438-15279457 | Msa0719800:intron | 20.0% |
| !! | TTCACTCATATATAAAAGTA+TGG | + | chr5_1:15279770-15279789 | Msa0719800:exon | 20.0% |
| !!! | TCACTCATATATAAAAGTAT+GGG | + | chr5_1:15279771-15279790 | Msa0719800:exon | 20.0% |
| !! | TTATCTATACTGATAGTTAA+TGG | + | chr5_1:15279880-15279899 | Msa0719800:intron | 20.0% |
| !! | TAGCTAGATATTAGAATATT+TGG | - | chr5_1:15280254-15280273 | None:intergenic | 20.0% |
| !! | ACAATGATAATAGTTTGAAA+AGG | - | chr5_1:15280351-15280370 | None:intergenic | 20.0% |
| !!! | ATTTGTTTCCTTATTTACTT+AGG | - | chr5_1:15280476-15280495 | None:intergenic | 20.0% |
| !!! | GAAACATAGTTAATTTTGTA+TGG | + | chr5_1:15280603-15280622 | Msa0719800:intron | 20.0% |
| !! | ATTATCCTTCATTAATTATG+TGG | + | chr5_1:15280656-15280675 | Msa0719800:intron | 20.0% |
| !! | TTATCCTTCATTAATTATGT+GGG | + | chr5_1:15280657-15280676 | Msa0719800:intron | 20.0% |
| !! | GAATGAGTAATAAATAGTAA+AGG | + | chr5_1:15280707-15280726 | Msa0719800:intron | 20.0% |
| !! | ACATATCAATTAAAATTTCC+CGG | + | chr5_1:15281151-15281170 | Msa0719800:intron | 20.0% |
| !! | TAATTAACCAAATAAAACAC+GGG | - | chr5_1:15281522-15281541 | None:intergenic | 20.0% |
| !! | TCATAATTAACAATGATTAC+CGG | - | chr5_1:15281651-15281670 | None:intergenic | 20.0% |
| !! | CATTGTTAATTATGATTTCA+TGG | + | chr5_1:15281656-15281675 | Msa0719800:intron | 20.0% |
| !!! | ACACTAGAAAAAGTTTTAAT+AGG | - | chr5_1:15282208-15282227 | None:intergenic | 20.0% |
| !!! | TGCAATTTTTTAATACATCA+TGG | + | chr5_1:15282370-15282389 | Msa0719800:intron | 20.0% |
| !!! | GCAATTTTTTAATACATCAT+GGG | + | chr5_1:15282371-15282390 | Msa0719800:intron | 20.0% |
| !!! | TATGTTTTTTCAACTATCAT+AGG | + | chr5_1:15282781-15282800 | Msa0719800:intron | 20.0% |
| !! | GTGAAAATTAGAAACTATAT+TGG | - | chr5_1:15282898-15282917 | None:intergenic | 20.0% |
| !! | AACAAACTTAAATATAGGAA+TGG | + | chr5_1:15283129-15283148 | Msa0719800:CDS | 20.0% |
| !!! | TAAATATAGGAATGGATTAT+TGG | + | chr5_1:15283137-15283156 | Msa0719800:CDS | 20.0% |
| !!! | GCTTAATCTAATTGTATTTT+AGG | + | chr5_1:15283714-15283733 | Msa0719800:intron | 20.0% |
| !!! | ACTAAAATACAACTTTTATG+AGG | - | chr5_1:15283751-15283770 | None:intergenic | 20.0% |
| !!! | AAAGTTGTATTTTAGTGAAT+AGG | + | chr5_1:15283755-15283774 | Msa0719800:intron | 20.0% |
| !!! | TGTATGCTTTTTTTGTTAAA+AGG | + | chr5_1:15284599-15284618 | Msa0719800:intron | 20.0% |
| !! | AGGAATGAAAAGTTTAAAAA+AGG | + | chr5_1:15284619-15284638 | Msa0719800:intron | 20.0% |
| !! | GGAATGAAAAGTTTAAAAAA+GGG | + | chr5_1:15284620-15284639 | Msa0719800:intron | 20.0% |
| !!! | ACTACATTTGACTTATTTAT+TGG | + | chr5_1:15284734-15284753 | Msa0719800:intron | 20.0% |
| !! | TTATAAGAAATGATAAATCC+TGG | - | chr5_1:15284872-15284891 | None:intergenic | 20.0% |
| !! | TAGGTTAAGTCAAATAATTA+TGG | - | chr5_1:15285029-15285048 | None:intergenic | 20.0% |
| !!! | AGATCTTTTAAGACTATAAT+AGG | - | chr5_1:15285298-15285317 | None:intergenic | 20.0% |
| !! | ACAATATATATTAATGTAGC+TGG | + | chr5_1:15285455-15285474 | Msa0719800:three_prime_UTR | 20.0% |
| !! | TTTCTGCATGAATAATTTAT+CGG | + | chr5_1:15285495-15285514 | Msa0719800:three_prime_UTR | 20.0% |
| !! | ATCAAAAATTAGGGTTTGTT+GGG | - | chr5_1:15279020-15279039 | None:intergenic | 25.0% |
| ! | TAAGATTGAATTGATGAGAA+GGG | - | chr5_1:15279062-15279081 | None:intergenic | 25.0% |
| ! | TTAAGATTGAATTGATGAGA+AGG | - | chr5_1:15279063-15279082 | None:intergenic | 25.0% |
| !!! | TTGGTGAAAATTTTGATCTT+AGG | - | chr5_1:15279090-15279109 | None:intergenic | 25.0% |
| !!! | GGGATTTTATTTGAGAAATT+TGG | - | chr5_1:15279109-15279128 | None:intergenic | 25.0% |
| ! | TCAATTTCACTCTTTATCTT+TGG | + | chr5_1:15279342-15279361 | Msa0719800:intron | 25.0% |
| !!! | TCATATTGATTTTCTAGCTT+TGG | + | chr5_1:15279367-15279386 | Msa0719800:intron | 25.0% |
| ! | ATTTCTAATGAGAATGAGTA+TGG | + | chr5_1:15279677-15279696 | Msa0719800:intron | 25.0% |
| !!! | GAAACATTTATTGTTTTTCC+AGG | + | chr5_1:15279922-15279941 | Msa0719800:intron | 25.0% |
| !! | AGAATATGCCTATACAATTT+TGG | - | chr5_1:15280078-15280097 | None:intergenic | 25.0% |
| !!! | TATATTTTAAATGCCCGATT+CGG | + | chr5_1:15280175-15280194 | Msa0719800:intron | 25.0% |
| ! | CATTAATGATCAATAATACC+AGG | - | chr5_1:15280230-15280249 | None:intergenic | 25.0% |
| ! | CTGGTATTATTGATCATTAA+TGG | + | chr5_1:15280228-15280247 | Msa0719800:intron | 25.0% |
| !! | TTATTTTCAACATTAGGCAT+TGG | - | chr5_1:15280307-15280326 | None:intergenic | 25.0% |
| ! | AATCTGTTATTATGCGAATT+AGG | + | chr5_1:15280444-15280463 | Msa0719800:intron | 25.0% |
| !! | AAGTGACTTATAATTTGTGA+CGG | - | chr5_1:15280562-15280581 | None:intergenic | 25.0% |
| !! | GTTTCTTAATTTGAGTGAAA+TGG | - | chr5_1:15280588-15280607 | None:intergenic | 25.0% |
| !! | AATTGACTTATAATTTGGGA+CGG | + | chr5_1:15280772-15280791 | Msa0719800:intron | 25.0% |
| ! | AGAAGACTAATAAATAGTTG+AGG | - | chr5_1:15281403-15281422 | None:intergenic | 25.0% |
| ! | AATTAACCAAATAAAACACG+GGG | - | chr5_1:15281521-15281540 | None:intergenic | 25.0% |
| !!! | CAATCACTTTTTGTTAATTG+CGG | + | chr5_1:15281704-15281723 | Msa0719800:intron | 25.0% |
| !!! | ACTTTTTCCCTACTTATATA+AGG | - | chr5_1:15281883-15281902 | None:intergenic | 25.0% |
| ! | AGGAAAAATTACCAATCAAA+AGG | + | chr5_1:15281971-15281990 | Msa0719800:CDS | 25.0% |
| ! | TACTGTTTGATGAAAAAGAA+TGG | - | chr5_1:15282139-15282158 | None:intergenic | 25.0% |
| !!! | TATCAATGTTTTTGCTCTAT+TGG | + | chr5_1:15282501-15282520 | Msa0719800:intron | 25.0% |
| !!! | TCCTATATTTAAGTTTGTTG+CGG | - | chr5_1:15283128-15283147 | None:intergenic | 25.0% |
| ! | ATCGAAAGAATAAACATCAT+TGG | - | chr5_1:15283300-15283319 | None:intergenic | 25.0% |
| ! | ATACATAGTCACAATTTGAA+AGG | - | chr5_1:15283434-15283453 | None:intergenic | 25.0% |
| ! | CTTAAAAACAAGGAATATCT+TGG | - | chr5_1:15283493-15283512 | None:intergenic | 25.0% |
| ! | TTGTGACACTTATTAAATCT+TGG | + | chr5_1:15283787-15283806 | Msa0719800:intron | 25.0% |
| ! | CACTTATTAAATCTTGGTTT+AGG | + | chr5_1:15283793-15283812 | Msa0719800:intron | 25.0% |
| ! | TAATTCTAAATGTGTAAGTG+GGG | - | chr5_1:15284005-15284024 | None:intergenic | 25.0% |
| ! | GTAATTCTAAATGTGTAAGT+GGG | - | chr5_1:15284006-15284025 | None:intergenic | 25.0% |
| ! | TGTAATTCTAAATGTGTAAG+TGG | - | chr5_1:15284007-15284026 | None:intergenic | 25.0% |
| ! | AAAATTCTCTATCTGAGAAA+GGG | - | chr5_1:15284061-15284080 | None:intergenic | 25.0% |
| ! | AAAAATTCTCTATCTGAGAA+AGG | - | chr5_1:15284062-15284081 | None:intergenic | 25.0% |
| !! | TTCTCAGATAGAGAATTTTT+AGG | + | chr5_1:15284062-15284081 | Msa0719800:intron | 25.0% |
| !! | ACATTGCAAGTTATTGATTA+CGG | - | chr5_1:15284159-15284178 | None:intergenic | 25.0% |
| ! | TAATGCGATTTACTTCTAAT+CGG | - | chr5_1:15284520-15284539 | None:intergenic | 25.0% |
| !! | ATGATCTTTTACCAAAAAAG+AGG | - | chr5_1:15284697-15284716 | None:intergenic | 25.0% |
| !!! | ATTTTAAGGAAATCTACGAA+TGG | - | chr5_1:15284992-15285011 | None:intergenic | 25.0% |
| ! | TAGATTTCCTTAAAATGTGA+AGG | + | chr5_1:15284996-15285015 | Msa0719800:intron | 25.0% |
| !! | TAATAAGCCTTCACATTTTA+AGG | - | chr5_1:15285006-15285025 | None:intergenic | 25.0% |
| ! | AACCTAAAGATTTAATCTAC+AGG | + | chr5_1:15285084-15285103 | Msa0719800:intron | 25.0% |
| ! | AAAAGACAAATTAGGAATGA+GGG | - | chr5_1:15285339-15285358 | None:intergenic | 25.0% |
| ! | TAAAAGACAAATTAGGAATG+AGG | - | chr5_1:15285340-15285359 | None:intergenic | 25.0% |
| ! | TTCTGCATGAATAATTTATC+GGG | + | chr5_1:15285496-15285515 | Msa0719800:three_prime_UTR | 25.0% |
| GATCAAAAATTAGGGTTTGT+TGG | - | chr5_1:15279021-15279040 | None:intergenic | 30.0% | |
| TGGGGATAGATCAAAAATTA+GGG | - | chr5_1:15279029-15279048 | None:intergenic | 30.0% | |
| TTGGGGATAGATCAAAAATT+AGG | - | chr5_1:15279030-15279049 | None:intergenic | 30.0% | |
| AAGATTGAATTGATGAGAAG+GGG | - | chr5_1:15279061-15279080 | None:intergenic | 30.0% | |
| GAAAAATAGAAATTGAGCGT+AGG | - | chr5_1:15279146-15279165 | None:intergenic | 30.0% | |
| TTACCACTCAAAGAGAAATT+GGG | - | chr5_1:15279234-15279253 | None:intergenic | 30.0% | |
| ATTACCACTCAAAGAGAAAT+TGG | - | chr5_1:15279235-15279254 | None:intergenic | 30.0% | |
| !! | TGAATTTGCTATGTTAGGTT+TGG | + | chr5_1:15279409-15279428 | Msa0719800:intron | 30.0% |
| ! | TGGATGATTTTGCAATGATT+AGG | + | chr5_1:15279466-15279485 | Msa0719800:intron | 30.0% |
| ! | ATGATTTTGCAATGATTAGG+AGG | + | chr5_1:15279469-15279488 | Msa0719800:intron | 30.0% |
| ! | TGATTTTGCAATGATTAGGA+GGG | + | chr5_1:15279470-15279489 | Msa0719800:intron | 30.0% |
| ATCTTTACAGTTGTGGAATT+CGG | + | chr5_1:15279641-15279660 | Msa0719800:intron | 30.0% | |
| AAAATATATGCGTCATTACC+TGG | - | chr5_1:15280163-15280182 | None:intergenic | 30.0% | |
| TTGAATATTGCAAGTTAACC+TGG | + | chr5_1:15280209-15280228 | Msa0719800:intron | 30.0% | |
| !! | AAGTTTTTAGATAGGGTAGA+AGG | + | chr5_1:15280380-15280399 | Msa0719800:intron | 30.0% |
| CTTTCCCACATAATTAATGA+AGG | - | chr5_1:15280664-15280683 | None:intergenic | 30.0% | |
| ! | TAAATAGTAAAGGGTGTGAT+AGG | + | chr5_1:15280717-15280736 | Msa0719800:intron | 30.0% |
| ! | CTTTGAAAGATTTAGCACAA+AGG | - | chr5_1:15280860-15280879 | None:intergenic | 30.0% |
| GGAAAGCTAAGTTAGTAAAA+TGG | + | chr5_1:15281009-15281028 | Msa0719800:intron | 30.0% | |
| AGCTAAGTTAGTAAAATGGA+TGG | + | chr5_1:15281013-15281032 | Msa0719800:intron | 30.0% | |
| ! | TGCATGGAAATTTTTGCTAA+TGG | - | chr5_1:15281122-15281141 | None:intergenic | 30.0% |
| GATATGTATAATTGCATGCA+TGG | - | chr5_1:15281138-15281157 | None:intergenic | 30.0% | |
| ATAAAGTAGTCTTCATACAC+CGG | - | chr5_1:15281173-15281192 | None:intergenic | 30.0% | |
| ATTACATTCCTTAAGCTCTA+AGG | - | chr5_1:15281257-15281276 | None:intergenic | 30.0% | |
| AAACATCTATGTCTTAACGA+AGG | + | chr5_1:15281304-15281323 | Msa0719800:intron | 30.0% | |
| AACATCTATGTCTTAACGAA+GGG | + | chr5_1:15281305-15281324 | Msa0719800:intron | 30.0% | |
| GCTTGAAACTCAATAATGAA+TGG | + | chr5_1:15281331-15281350 | Msa0719800:intron | 30.0% | |
| ! | CTGAATTGTTCATTTTGTAG+TGG | - | chr5_1:15281372-15281391 | None:intergenic | 30.0% |
| ! | AACAAGATATTTTGTACTGC+TGG | - | chr5_1:15281489-15281508 | None:intergenic | 30.0% |
| TAATTAACAATGATTACCGG+AGG | - | chr5_1:15281648-15281667 | None:intergenic | 30.0% | |
| CGCAATTAACAAAAAGTGAT+TGG | - | chr5_1:15281706-15281725 | None:intergenic | 30.0% | |
| TAATTGCGGAAAATTTACAC+AGG | + | chr5_1:15281718-15281737 | Msa0719800:intron | 30.0% | |
| AATTGCGGAAAATTTACACA+GGG | + | chr5_1:15281719-15281738 | Msa0719800:intron | 30.0% | |
| AGGAACACAAAAATGTAGAA+GGG | - | chr5_1:15281812-15281831 | None:intergenic | 30.0% | |
| AAGGAACACAAAAATGTAGA+AGG | - | chr5_1:15281813-15281832 | None:intergenic | 30.0% | |
| TTACCAATCAAAAGGTCAAA+AGG | + | chr5_1:15281979-15281998 | Msa0719800:CDS | 30.0% | |
| AAAAGGTCAAAAGGAAGTTT+AGG | + | chr5_1:15281988-15282007 | Msa0719800:CDS | 30.0% | |
| GTAGTTTGAACATGATTACA+GGG | + | chr5_1:15282010-15282029 | Msa0719800:CDS | 30.0% | |
| ACAGGGAAAAATAATGAACA+TGG | + | chr5_1:15282027-15282046 | Msa0719800:CDS | 30.0% | |
| TAATGAACATGGTAAAACAG+CGG | + | chr5_1:15282038-15282057 | Msa0719800:CDS | 30.0% | |
| ! | TCACTCAAAGAGGTAAATTT+TGG | + | chr5_1:15282080-15282099 | Msa0719800:intron | 30.0% |
| ATACACGACATATTGAATCA+TGG | - | chr5_1:15282279-15282298 | None:intergenic | 30.0% | |
| TTAAAAGGATAACACATGAG+AGG | - | chr5_1:15282332-15282351 | None:intergenic | 30.0% | |
| AAATTGCCAGAATTTGCAAA+TGG | - | chr5_1:15282568-15282587 | None:intergenic | 30.0% | |
| ! | TTTATGCTGATTGGTAATCT+TGG | + | chr5_1:15282585-15282604 | Msa0719800:intron | 30.0% |
| TCAGAATGTAAGTTATGTGA+CGG | + | chr5_1:15282667-15282686 | Msa0719800:intron | 30.0% | |
| TTCTAACACACATACATCAT+GGG | - | chr5_1:15282939-15282958 | None:intergenic | 30.0% | |
| ! | TACCTTTTCTATTGAGTTAC+AGG | + | chr5_1:15282968-15282987 | Msa0719800:intron | 30.0% |
| !! | CTATATTTAAGTTTGTTGCG+GGG | - | chr5_1:15283126-15283145 | None:intergenic | 30.0% |
| !! | CCTATATTTAAGTTTGTTGC+GGG | - | chr5_1:15283127-15283146 | None:intergenic | 30.0% |
| ! | TTATTGCTGTTCAATGAATG+AGG | + | chr5_1:15283326-15283345 | Msa0719800:intron | 30.0% |
| AACATACCATGCTTTATGTT+TGG | + | chr5_1:15283394-15283413 | Msa0719800:intron | 30.0% | |
| AAATTGCCAAACATAAAGCA+TGG | - | chr5_1:15283403-15283422 | None:intergenic | 30.0% | |
| AGTACACTTGCTTAAAAACA+AGG | - | chr5_1:15283503-15283522 | None:intergenic | 30.0% | |
| ! | AATTACACACATTTTCATCG+AGG | + | chr5_1:15283528-15283547 | Msa0719800:intron | 30.0% |
| ! | TGAAAATCAGTGCTGTTAAA+TGG | - | chr5_1:15283689-15283708 | None:intergenic | 30.0% |
| GAGTATGTACATGTATGTTT+GGG | + | chr5_1:15283815-15283834 | Msa0719800:intron | 30.0% | |
| AGTATGTACATGTATGTTTG+GGG | + | chr5_1:15283816-15283835 | Msa0719800:intron | 30.0% | |
| TGTGAAGTTATGTTTGACAT+TGG | + | chr5_1:15283858-15283877 | Msa0719800:intron | 30.0% | |
| GTGAAGTTATGTTTGACATT+GGG | + | chr5_1:15283859-15283878 | Msa0719800:intron | 30.0% | |
| ! | TTCATGCTTTTCTTTTTCTG+TGG | + | chr5_1:15283949-15283968 | Msa0719800:intron | 30.0% |
| CTATTAAAACCTTAAACCGT+GGG | - | chr5_1:15284091-15284110 | None:intergenic | 30.0% | |
| AATTGTCACATTTCTGATTC+CGG | + | chr5_1:15284415-15284434 | Msa0719800:intron | 30.0% | |
| AGTTTAAAAAAGGGAACACA+TGG | + | chr5_1:15284629-15284648 | Msa0719800:intron | 30.0% | |
| TCAAACAGTGCATAAATAGA+TGG | + | chr5_1:15284930-15284949 | Msa0719800:intron | 30.0% | |
| CAAACAGTGCATAAATAGAT+GGG | + | chr5_1:15284931-15284950 | Msa0719800:intron | 30.0% | |
| CTCCTGTAGATTAAATCTTT+AGG | - | chr5_1:15285089-15285108 | None:intergenic | 30.0% | |
| !!! | TGATCCATGTTGTTTTGAAT+GGG | - | chr5_1:15285371-15285390 | None:intergenic | 30.0% |
| !!! | ATGATCCATGTTGTTTTGAA+TGG | - | chr5_1:15285372-15285391 | None:intergenic | 30.0% |
| TAACTTTCACACTGAAAATG+AGG | - | chr5_1:15285419-15285438 | None:intergenic | 30.0% | |
| TTTGACACGAAATATAACTC+AGG | - | chr5_1:15285544-15285563 | None:intergenic | 30.0% | |
| !! | GTTAATGTGTTTGTTGTTCG+CGG | - | chr5_1:15278998-15279017 | None:intergenic | 35.0% |
| AGATTGAATTGATGAGAAGG+GGG | - | chr5_1:15279060-15279079 | None:intergenic | 35.0% | |
| AGTAGCAGTGAATATACAGT+AGG | - | chr5_1:15279187-15279206 | None:intergenic | 35.0% | |
| TACCACTCAAAGAGAAATTG+GGG | - | chr5_1:15279233-15279252 | None:intergenic | 35.0% | |
| ! | GATTTTGCAATGATTAGGAG+GGG | + | chr5_1:15279471-15279490 | Msa0719800:intron | 35.0% |
| GTTAATGGAATGGTTCATTG+CGG | + | chr5_1:15279511-15279530 | Msa0719800:intron | 35.0% | |
| GTGAACTGTTTAGTCTAACA+TGG | + | chr5_1:15279616-15279635 | Msa0719800:intron | 35.0% | |
| CATGGTTATCTTTACAGTTG+TGG | + | chr5_1:15279634-15279653 | Msa0719800:intron | 35.0% | |
| GTTATGTGTATGTTGCAGAA+TGG | + | chr5_1:15279727-15279746 | Msa0719800:intron | 35.0% | |
| AAGTATGGGCAATAATGAGA+TGG | + | chr5_1:15279785-15279804 | Msa0719800:exon | 35.0% | |
| GGATAAAACAGCAAAAGAGA+AGG | + | chr5_1:15279806-15279825 | Msa0719800:CDS | 35.0% | |
| CTAGTTAAAAACCTGAAAGC+TGG | - | chr5_1:15279996-15280015 | None:intergenic | 35.0% | |
| !! | AGCTCAAGTAAGGAGTATTA+TGG | - | chr5_1:15280279-15280298 | None:intergenic | 35.0% |
| ! | TGACTTATAATTTGTGACGG+AGG | - | chr5_1:15280559-15280578 | None:intergenic | 35.0% |
| ! | GTGGACTACATAAAACATAG+TGG | + | chr5_1:15280935-15280954 | Msa0719800:intron | 35.0% |
| AACAATGCTTATCTCTGTGA+TGG | - | chr5_1:15280989-15281008 | None:intergenic | 35.0% | |
| ! | ATCACAGAGATAAGCATTGT+TGG | + | chr5_1:15280988-15281007 | Msa0719800:intron | 35.0% |
| GAGCTAGATAGAAATGTTGT+CGG | + | chr5_1:15281054-15281073 | Msa0719800:intron | 35.0% | |
| AAAATCTCTTCATCCTTGGT+TGG | - | chr5_1:15281083-15281102 | None:intergenic | 35.0% | |
| TAAAGTAGTCTTCATACACC+GGG | - | chr5_1:15281172-15281191 | None:intergenic | 35.0% | |
| !! | CCTTAAGCTCTAAGGAATTA+GGG | - | chr5_1:15281249-15281268 | None:intergenic | 35.0% |
| !! | TCCTTAAGCTCTAAGGAATT+AGG | - | chr5_1:15281250-15281269 | None:intergenic | 35.0% |
| ! | TCCTTTTCCTATTCTGTGAA+GGG | + | chr5_1:15281852-15281871 | Msa0719800:intron | 35.0% |
| GGCTTGTCCTTATATAAGTA+GGG | + | chr5_1:15281873-15281892 | Msa0719800:intron | 35.0% | |
| AGTAACACAAGTTTACATGC+AGG | + | chr5_1:15281900-15281919 | Msa0719800:intron | 35.0% | |
| GTAACACAAGTTTACATGCA+GGG | + | chr5_1:15281901-15281920 | Msa0719800:intron | 35.0% | |
| ! | AATTTTTCCTTCACTTCAGG+AGG | - | chr5_1:15281961-15281980 | None:intergenic | 35.0% |
| ! | GGTAATTTTTCCTTCACTTC+AGG | - | chr5_1:15281964-15281983 | None:intergenic | 35.0% |
| ! | CTTCCTTTTGACCTTTTGAT+TGG | - | chr5_1:15281985-15282004 | None:intergenic | 35.0% |
| GGTAGTTTGAACATGATTAC+AGG | + | chr5_1:15282009-15282028 | Msa0719800:CDS | 35.0% | |
| AATGAACATGGTAAAACAGC+GGG | + | chr5_1:15282039-15282058 | Msa0719800:CDS | 35.0% | |
| CTAATGGAATTCACTCAAAG+AGG | + | chr5_1:15282070-15282089 | Msa0719800:CDS | 35.0% | |
| TCTTGCTCAGACTTATTTGA+AGG | + | chr5_1:15282169-15282188 | Msa0719800:intron | 35.0% | |
| TATTTATCTCCTAATGCCTG+AGG | + | chr5_1:15282444-15282463 | Msa0719800:intron | 35.0% | |
| CAAATCAAGTAACTGTGTAG+GGG | - | chr5_1:15282471-15282490 | None:intergenic | 35.0% | |
| GCAAATCAAGTAACTGTGTA+GGG | - | chr5_1:15282472-15282491 | None:intergenic | 35.0% | |
| AGCAAATCAAGTAACTGTGT+AGG | - | chr5_1:15282473-15282492 | None:intergenic | 35.0% | |
| ! | ACTTTGCCATTTGCAAATTC+TGG | + | chr5_1:15282559-15282578 | Msa0719800:intron | 35.0% |
| TTCTGGCAATTTATGCTGAT+TGG | + | chr5_1:15282576-15282595 | Msa0719800:intron | 35.0% | |
| !! | AGTTATGAAGGTACTAGTGA+AGG | + | chr5_1:15282629-15282648 | Msa0719800:CDS | 35.0% |
| AGTGCAAAAATGTGTGTTTG+TGG | - | chr5_1:15282724-15282743 | None:intergenic | 35.0% | |
| ATAGGGCTCTCAATTGAAAT+CGG | + | chr5_1:15282822-15282841 | Msa0719800:intron | 35.0% | |
| CTTCTAACACACATACATCA+TGG | - | chr5_1:15282940-15282959 | None:intergenic | 35.0% | |
| CACCTGTAACTCAATAGAAA+AGG | - | chr5_1:15282973-15282992 | None:intergenic | 35.0% | |
| GTTTGATTAACCACTGTATG+AGG | - | chr5_1:15283052-15283071 | None:intergenic | 35.0% | |
| TATGTCTGTCATTCCTATCT+CGG | + | chr5_1:15283072-15283091 | Msa0719800:CDS | 35.0% | |
| CCCGCAACAAACTTAAATAT+AGG | + | chr5_1:15283124-15283143 | Msa0719800:CDS | 35.0% | |
| ATAGTGTTCAGTCACAACTT+TGG | + | chr5_1:15283251-15283270 | Msa0719800:CDS | 35.0% | |
| ATGTTGAATGTAAGCAAGAG+AGG | - | chr5_1:15283379-15283398 | None:intergenic | 35.0% | |
| ! | ATTTTCATCGAGGTTGTCAA+AGG | + | chr5_1:15283538-15283557 | Msa0719800:intron | 35.0% |
| !!! | GTGTTTATATGGTGGGTTTT+AGG | - | chr5_1:15283571-15283590 | None:intergenic | 35.0% |
| AAATGGCGTGTTTATATGGT+GGG | - | chr5_1:15283578-15283597 | None:intergenic | 35.0% | |
| AGCTCTTCACAAATTGTCTA+TGG | + | chr5_1:15283619-15283638 | Msa0719800:intron | 35.0% | |
| TCTTCACAAATTGTCTATGG+CGG | + | chr5_1:15283622-15283641 | Msa0719800:intron | 35.0% | |
| ! | AAATCAGTGCTGTTAAATGG+TGG | - | chr5_1:15283686-15283705 | None:intergenic | 35.0% |
| !!! | AACAGCACTGATTTTCATTG+AGG | + | chr5_1:15283692-15283711 | Msa0719800:intron | 35.0% |
| GGAGTATGTACATGTATGTT+TGG | + | chr5_1:15283814-15283833 | Msa0719800:intron | 35.0% | |
| !!! | GAGAATTTTTAGGTAACCCA+CGG | + | chr5_1:15284072-15284091 | Msa0719800:intron | 35.0% |
| GCTATTAAAACCTTAAACCG+TGG | - | chr5_1:15284092-15284111 | None:intergenic | 35.0% | |
| !!! | ATAGCTTGTAGCTTTTTTCC+TGG | + | chr5_1:15284107-15284126 | Msa0719800:intron | 35.0% |
| !!! | TAGCTTGTAGCTTTTTTCCT+GGG | + | chr5_1:15284108-15284127 | Msa0719800:intron | 35.0% |
| AAAAACGAGTTATATTCCCC+AGG | - | chr5_1:15284128-15284147 | None:intergenic | 35.0% | |
| AAAGACGAAAGCAGTCTAAT+AGG | + | chr5_1:15284307-15284326 | Msa0719800:CDS | 35.0% | |
| AAGACGAAAGCAGTCTAATA+GGG | + | chr5_1:15284308-15284327 | Msa0719800:CDS | 35.0% | |
| TGAAGGAAATAAAGGCTACA+TGG | - | chr5_1:15284379-15284398 | None:intergenic | 35.0% | |
| GCAAACACTGAAGGAAATAA+AGG | - | chr5_1:15284387-15284406 | None:intergenic | 35.0% | |
| TATGATCAAGCAAACACTGA+AGG | - | chr5_1:15284396-15284415 | None:intergenic | 35.0% | |
| AAAAAAGGGAACACATGGAA+AGG | + | chr5_1:15284634-15284653 | Msa0719800:intron | 35.0% | |
| AAAAAGGGAACACATGGAAA+GGG | + | chr5_1:15284635-15284654 | Msa0719800:intron | 35.0% | |
| !! | ACAGTTTTCACCTTATTTCC+AGG | + | chr5_1:15284840-15284859 | Msa0719800:intron | 35.0% |
| ! | CATAAATAGATGGGCTTAGA+TGG | + | chr5_1:15284940-15284959 | Msa0719800:intron | 35.0% |
| TTTAATCTACAGGAGAGACT+TGG | + | chr5_1:15285094-15285113 | Msa0719800:intron | 35.0% | |
| TTAATCTACAGGAGAGACTT+GGG | + | chr5_1:15285095-15285114 | Msa0719800:intron | 35.0% | |
| TAACCCCATTCAAAACAACA+TGG | + | chr5_1:15285364-15285383 | Msa0719800:three_prime_UTR | 35.0% | |
| !!! | GATCCATGTTGTTTTGAATG+GGG | - | chr5_1:15285370-15285389 | None:intergenic | 35.0% |
| CGTAGGAAGAAGGTGAATTT+GGG | - | chr5_1:15279129-15279148 | None:intergenic | 40.0% | |
| AGAAATTGAGCGTAGGAAGA+AGG | - | chr5_1:15279139-15279158 | None:intergenic | 40.0% | |
| CAGTGAATATACAGTAGGAG+GGG | - | chr5_1:15279182-15279201 | None:intergenic | 40.0% | |
| GCAGTGAATATACAGTAGGA+GGG | - | chr5_1:15279183-15279202 | None:intergenic | 40.0% | |
| AGCAGTGAATATACAGTAGG+AGG | - | chr5_1:15279184-15279203 | None:intergenic | 40.0% | |
| ATCCCCAATTTCTCTTTGAG+TGG | + | chr5_1:15279228-15279247 | Msa0719800:five_prime_UTR | 40.0% | |
| CAATGATTAGGAGGGGAATT+AGG | + | chr5_1:15279478-15279497 | Msa0719800:intron | 40.0% | |
| !! | TTAGGATGGTGGGTTGTTAA+TGG | + | chr5_1:15279496-15279515 | Msa0719800:intron | 40.0% |
| !! | ATGGTGGGTTGTTAATGGAA+TGG | + | chr5_1:15279501-15279520 | Msa0719800:intron | 40.0% |
| ! | TGGTACATTTTGTGTGACGA+AGG | + | chr5_1:15279900-15279919 | Msa0719800:intron | 40.0% |
| ATTAACTGTTCCAGTGCTAG+TGG | - | chr5_1:15279963-15279982 | None:intergenic | 40.0% | |
| TGGAACAGTTAATCCTGACT+GGG | + | chr5_1:15279970-15279989 | Msa0719800:CDS | 40.0% | |
| ACCCTGCTCCAAAATTGTAT+AGG | + | chr5_1:15280067-15280086 | Msa0719800:intron | 40.0% | |
| !!! | GCCTATACAATTTTGGAGCA+GGG | - | chr5_1:15280071-15280090 | None:intergenic | 40.0% |
| !!! | TGCCTATACAATTTTGGAGC+AGG | - | chr5_1:15280072-15280091 | None:intergenic | 40.0% |
| ! | GGCACTAGCCTAAGTAAATA+AGG | + | chr5_1:15280465-15280484 | Msa0719800:intron | 40.0% |
| ! | GACTTATAATTTGGGACGGA+TGG | + | chr5_1:15280776-15280795 | Msa0719800:intron | 40.0% |
| ATCTCTGTGATGGTTCTTTC+TGG | - | chr5_1:15280979-15280998 | None:intergenic | 40.0% | |
| CAGCAAAATCTCTTCATCCT+TGG | - | chr5_1:15281087-15281106 | None:intergenic | 40.0% | |
| ! | CAAGGATGAAGAGATTTTGC+TGG | + | chr5_1:15281085-15281104 | Msa0719800:intron | 40.0% |
| TTTATGCGCTCTCATGTGTT+AGG | + | chr5_1:15281188-15281207 | Msa0719800:intron | 40.0% | |
| CCCTAATTCCTTAGAGCTTA+AGG | + | chr5_1:15281246-15281265 | Msa0719800:intron | 40.0% | |
| !! | ACACTTCCCCGTGTTTTATT+TGG | + | chr5_1:15281512-15281531 | Msa0719800:intron | 40.0% |
| TACATTGCAACATAGGGATG+TGG | - | chr5_1:15281591-15281610 | None:intergenic | 40.0% | |
| TGGGGATACATTGCAACATA+GGG | - | chr5_1:15281597-15281616 | None:intergenic | 40.0% | |
| ATGGGGATACATTGCAACAT+AGG | - | chr5_1:15281598-15281617 | None:intergenic | 40.0% | |
| TATGTTGCAATGTATCCCCA+TGG | + | chr5_1:15281597-15281616 | Msa0719800:CDS | 40.0% | |
| ATGAGCATATATGCCACCAT+GGG | - | chr5_1:15281616-15281635 | None:intergenic | 40.0% | |
| CAGACAAAGAAGGAGAAAGA+AGG | - | chr5_1:15281832-15281851 | None:intergenic | 40.0% | |
| AGGAAAAGGACAGACAAAGA+AGG | - | chr5_1:15281842-15281861 | None:intergenic | 40.0% | |
| ! | GTCCTTTTCCTATTCTGTGA+AGG | + | chr5_1:15281851-15281870 | Msa0719800:intron | 40.0% |
| GGGCTTGTCCTTATATAAGT+AGG | + | chr5_1:15281872-15281891 | Msa0719800:intron | 40.0% | |
| TTTACCATCAGTTTCCATGC+TGG | - | chr5_1:15281938-15281957 | None:intergenic | 40.0% | |
| ATGAACATGGTAAAACAGCG+GGG | + | chr5_1:15282040-15282059 | Msa0719800:CDS | 40.0% | |
| CATGTCCAAGAGAAAGTTCT+TGG | + | chr5_1:15282230-15282249 | Msa0719800:intron | 40.0% | |
| AAGCACCAAGAACTTTCTCT+TGG | - | chr5_1:15282238-15282257 | None:intergenic | 40.0% | |
| !! | AGAGAAAGTTCTTGGTGCTT+TGG | + | chr5_1:15282238-15282257 | Msa0719800:intron | 40.0% |
| AGTAATGTACTCAACAGGCT+TGG | - | chr5_1:15282542-15282561 | None:intergenic | 40.0% | |
| GGCAAAGTAATGTACTCAAC+AGG | - | chr5_1:15282547-15282566 | None:intergenic | 40.0% | |
| TGGTAATCTTGGATTTGCAG+TGG | + | chr5_1:15282596-15282615 | Msa0719800:intron | 40.0% | |
| GGTGAAAGTGGAAGTTATGA+AGG | + | chr5_1:15282617-15282636 | Msa0719800:CDS | 40.0% | |
| TAGGGCTCTCAATTGAAATC+GGG | + | chr5_1:15282823-15282842 | Msa0719800:intron | 40.0% | |
| !! | GCTGGATTCTTTTGAAGGTT+TGG | + | chr5_1:15282852-15282871 | Msa0719800:intron | 40.0% |
| ACAGGTGAACCATCTCAAAA+TGG | + | chr5_1:15282986-15283005 | Msa0719800:intron | 40.0% | |
| TCAGCGCATACTTCACAAAA+TGG | + | chr5_1:15283013-15283032 | Msa0719800:CDS | 40.0% | |
| CAGCGCATACTTCACAAAAT+GGG | + | chr5_1:15283014-15283033 | Msa0719800:CDS | 40.0% | |
| AGCGCATACTTCACAAAATG+GGG | + | chr5_1:15283015-15283034 | Msa0719800:CDS | 40.0% | |
| ACTTAATGCACCTCATACAG+TGG | + | chr5_1:15283039-15283058 | Msa0719800:CDS | 40.0% | |
| ! | TCTTGGTGACAAATACTGAG+AGG | - | chr5_1:15283476-15283495 | None:intergenic | 40.0% |
| GAAATGGCGTGTTTATATGG+TGG | - | chr5_1:15283579-15283598 | None:intergenic | 40.0% | |
| GACGAAATGGCGTGTTTATA+TGG | - | chr5_1:15283582-15283601 | None:intergenic | 40.0% | |
| TAAACACGCCATTTCGTCTA+TGG | + | chr5_1:15283584-15283603 | Msa0719800:intron | 40.0% | |
| CAATTTGTGAAGAGCTGTCA+TGG | - | chr5_1:15283615-15283634 | None:intergenic | 40.0% | |
| TTTAGGTAACCCACGGTTTA+AGG | + | chr5_1:15284079-15284098 | Msa0719800:intron | 40.0% | |
| !!! | AGCTTGTAGCTTTTTTCCTG+GGG | + | chr5_1:15284109-15284128 | Msa0719800:intron | 40.0% |
| AGTCTAATAGGGAATCTGCT+CGG | + | chr5_1:15284319-15284338 | Msa0719800:CDS | 40.0% | |
| TCACATTTCTGATTCCGGTT+TGG | + | chr5_1:15284420-15284439 | Msa0719800:intron | 40.0% | |
| TGAAAACAGCACATCCAAAC+CGG | - | chr5_1:15284437-15284456 | None:intergenic | 40.0% | |
| GCGATTTACTTCTAATCGGA+GGG | - | chr5_1:15284516-15284535 | None:intergenic | 40.0% | |
| TGCGATTTACTTCTAATCGG+AGG | - | chr5_1:15284517-15284536 | None:intergenic | 40.0% | |
| AAAAGGGAACACATGGAAAG+GGG | + | chr5_1:15284636-15284655 | Msa0719800:intron | 40.0% | |
| !! | CGAATGGTGTAGGTTTTAGT+TGG | - | chr5_1:15284976-15284995 | None:intergenic | 40.0% |
| AGGAAATCTACGAATGGTGT+AGG | - | chr5_1:15284986-15285005 | None:intergenic | 40.0% | |
| TAATCTACAGGAGAGACTTG+GGG | + | chr5_1:15285096-15285115 | Msa0719800:intron | 40.0% | |
| TGTAACGACACTCAACAAAG+TGG | + | chr5_1:15285145-15285164 | Msa0719800:CDS | 40.0% | |
| TGAGAAGGGGGCAAAGAATT+GGG | - | chr5_1:15279048-15279067 | None:intergenic | 45.0% | |
| ATGAGAAGGGGGCAAAGAAT+TGG | - | chr5_1:15279049-15279068 | None:intergenic | 45.0% | |
| GCGTAGGAAGAAGGTGAATT+TGG | - | chr5_1:15279130-15279149 | None:intergenic | 45.0% | |
| ACAGTAGGAGGGGTCAAAAT+TGG | - | chr5_1:15279172-15279191 | None:intergenic | 45.0% | |
| GATTAGGAGGGGAATTAGGA+TGG | + | chr5_1:15279482-15279501 | Msa0719800:intron | 45.0% | |
| CTGGAACAGTTAATCCTGAC+TGG | + | chr5_1:15279969-15279988 | Msa0719800:CDS | 45.0% | |
| TATTCTCCTATGCCTCCACA+TGG | + | chr5_1:15280092-15280111 | Msa0719800:CDS | 45.0% | |
| ! | ATGAATCCATGTGGAGGCAT+AGG | - | chr5_1:15280101-15280120 | None:intergenic | 45.0% |
| TATGCCTCCACATGGATTCA+TGG | + | chr5_1:15280100-15280119 | Msa0719800:CDS | 45.0% | |
| CACATATAAGGGTGAGCTTG+GGG | - | chr5_1:15280134-15280153 | None:intergenic | 45.0% | |
| CCACATATAAGGGTGAGCTT+GGG | - | chr5_1:15280135-15280154 | None:intergenic | 45.0% | |
| CCAAGCTCACCCTTATATGT+GGG | + | chr5_1:15280133-15280152 | Msa0719800:CDS | 45.0% | |
| CAAGCTCACCCTTATATGTG+GGG | + | chr5_1:15280134-15280153 | Msa0719800:CDS | 45.0% | |
| ATTGGACTGCAGCTCAAGTA+AGG | - | chr5_1:15280289-15280308 | None:intergenic | 45.0% | |
| ATTGCAACATAGGGATGTGG+TGG | - | chr5_1:15281588-15281607 | None:intergenic | 45.0% | |
| TGAGCATATATGCCACCATG+GGG | - | chr5_1:15281615-15281634 | None:intergenic | 45.0% | |
| GATGAGCATATATGCCACCA+TGG | - | chr5_1:15281617-15281636 | None:intergenic | 45.0% | |
| AACAATGATTACCGGAGGCA+TGG | - | chr5_1:15281643-15281662 | None:intergenic | 45.0% | |
| GTAGGCATGGCATAAGGATA+TGG | - | chr5_1:15281752-15281771 | None:intergenic | 45.0% | |
| ! | TTTGGAGTAGGCATGGCATA+AGG | - | chr5_1:15281758-15281777 | None:intergenic | 45.0% |
| TATGCCATGCCTACTCCAAA+CGG | + | chr5_1:15281758-15281777 | Msa0719800:CDS | 45.0% | |
| ! | AATACCGTTTGGAGTAGGCA+TGG | - | chr5_1:15281765-15281784 | None:intergenic | 45.0% |
| ! | TCAGCAATACCGTTTGGAGT+AGG | - | chr5_1:15281770-15281789 | None:intergenic | 45.0% |
| TACTCCAAACGGTATTGCTG+AGG | + | chr5_1:15281769-15281788 | Msa0719800:CDS | 45.0% | |
| GAAGGGTGAAAAACTCACAG+AGG | - | chr5_1:15281795-15281814 | None:intergenic | 45.0% | |
| GCCCTTCACAGAATAGGAAA+AGG | - | chr5_1:15281856-15281875 | None:intergenic | 45.0% | |
| TGGTAAACCTCCTGAAGTGA+AGG | + | chr5_1:15281951-15281970 | Msa0719800:CDS | 45.0% | |
| !! | GAAAGTTCTTGGTGCTTTGG+AGG | + | chr5_1:15282241-15282260 | Msa0719800:intron | 45.0% |
| ATGAGAGGAAACATCAGCTG+CGG | - | chr5_1:15282317-15282336 | None:intergenic | 45.0% | |
| TGGATTTGCAGTGGTGAAAG+TGG | + | chr5_1:15282605-15282624 | Msa0719800:intron | 45.0% | |
| CTCAATTGAAATCGGGAGAC+AGG | + | chr5_1:15282830-15282849 | Msa0719800:CDS | 45.0% | |
| ! | GACAGGCTGGATTCTTTTGA+AGG | + | chr5_1:15282847-15282866 | Msa0719800:CDS | 45.0% |
| !!! | GCTGAACTGCCATTTTGAGA+TGG | - | chr5_1:15282998-15283017 | None:intergenic | 45.0% |
| GCGCATACTTCACAAAATGG+GGG | + | chr5_1:15283016-15283035 | Msa0719800:CDS | 45.0% | |
| TCAGTCACAACTTTGGCTAC+AGG | + | chr5_1:15283258-15283277 | Msa0719800:CDS | 45.0% | |
| TTTGTGAAGAGCTGTCATGG+CGG | - | chr5_1:15283612-15283631 | None:intergenic | 45.0% | |
| TGTTAAATGGTGGCACACCA+TGG | - | chr5_1:15283676-15283695 | None:intergenic | 45.0% | |
| ! | TTGACATTGGGCATTGTCAG+AGG | + | chr5_1:15283871-15283890 | Msa0719800:intron | 45.0% |
| TCGATAAACCCCTGTTCCAA+GGG | - | chr5_1:15283917-15283936 | None:intergenic | 45.0% | |
| TTCGATAAACCCCTGTTCCA+AGG | - | chr5_1:15283918-15283937 | None:intergenic | 45.0% | |
| !!! | GGTTTGGATGTGCTGTTTTC+AGG | + | chr5_1:15284436-15284455 | Msa0719800:intron | 45.0% |
| TACCTTGAGAGCTGCATTCT+CGG | - | chr5_1:15284567-15284586 | None:intergenic | 45.0% | |
| ! | TACTTCCCCTGGTTTGAACT+CGG | + | chr5_1:15284662-15284681 | Msa0719800:intron | 45.0% |
| !!! | GGGACTTGTGACCTCTTTTT+TGG | + | chr5_1:15284683-15284702 | Msa0719800:intron | 45.0% |
| ! | AGATGGGCTTAGATGGAGTT+TGG | + | chr5_1:15284947-15284966 | Msa0719800:intron | 45.0% |
| ! | CAAATGTGTTGATCGTTCCC+TGG | - | chr5_1:15285127-15285146 | None:intergenic | 45.0% |
| TCAACAAAGTGGACAGACAG+AGG | + | chr5_1:15285156-15285175 | Msa0719800:CDS | 45.0% | |
| !!! | TAAATTTTAAGATATATAAA+AGG | + | chr5_1:15282749-15282768 | Msa0719800:intron | 5.0% |
| !! | GAAAATATAAATATTAAAAT+AGG | - | chr5_1:15284251-15284270 | None:intergenic | 5.0% |
| !! | TGTGTTTGTTGTTCGCGGAG+AGG | - | chr5_1:15278993-15279012 | None:intergenic | 50.0% |
| GAGAAGGGGGCAAAGAATTG+GGG | - | chr5_1:15279047-15279066 | None:intergenic | 50.0% | |
| ! | CTCTCCAGATCAAGCTCTGA+AGG | + | chr5_1:15279205-15279224 | Msa0719800:five_prime_UTR | 50.0% |
| GGATCCTTCAGAGCTTGATC+TGG | - | chr5_1:15279212-15279231 | None:intergenic | 50.0% | |
| TAGGAGGGGAATTAGGATGG+TGG | + | chr5_1:15279485-15279504 | Msa0719800:intron | 50.0% | |
| AGGAGGGGAATTAGGATGGT+GGG | + | chr5_1:15279486-15279505 | Msa0719800:intron | 50.0% | |
| AATTCAACCTGCGACGTTGG+TGG | - | chr5_1:15279846-15279865 | None:intergenic | 50.0% | |
| GTCAATTCAACCTGCGACGT+TGG | - | chr5_1:15279849-15279868 | None:intergenic | 50.0% | |
| AACTGTTCCAGTGCTAGTGG+TGG | - | chr5_1:15279960-15279979 | None:intergenic | 50.0% | |
| CTTGACGCCATGAATCCATG+TGG | - | chr5_1:15280110-15280129 | None:intergenic | 50.0% | |
| CCCAAGCTCACCCTTATATG+TGG | + | chr5_1:15280132-15280151 | Msa0719800:CDS | 50.0% | |
| CCCACATATAAGGGTGAGCT+TGG | - | chr5_1:15280136-15280155 | None:intergenic | 50.0% | |
| CCTGGACACCCCACATATAA+GGG | - | chr5_1:15280145-15280164 | None:intergenic | 50.0% | |
| ACCTGGACACCCCACATATA+AGG | - | chr5_1:15280146-15280165 | None:intergenic | 50.0% | |
| AACACTGTCTGTGCCGAATC+GGG | - | chr5_1:15280191-15280210 | None:intergenic | 50.0% | |
| CAACACTGTCTGTGCCGAAT+CGG | - | chr5_1:15280192-15280211 | None:intergenic | 50.0% | |
| ATGTTGTCGGACTCCAACCA+AGG | + | chr5_1:15281067-15281086 | Msa0719800:intron | 50.0% | |
| CAGCACATGATGCCTCCTTA+TGG | + | chr5_1:15281558-15281577 | Msa0719800:intron | 50.0% | |
| ! | TGTGGTGGAGTACCATAAGG+AGG | - | chr5_1:15281573-15281592 | None:intergenic | 50.0% |
| ! | GGATGTGGTGGAGTACCATA+AGG | - | chr5_1:15281576-15281595 | None:intergenic | 50.0% |
| GTTGCAATGTATCCCCATGG+TGG | + | chr5_1:15281600-15281619 | Msa0719800:CDS | 50.0% | |
| ! | ATGATTACCGGAGGCATGGA+TGG | - | chr5_1:15281639-15281658 | None:intergenic | 50.0% |
| GGACAAGCCCTTCACAGAAT+AGG | - | chr5_1:15281862-15281881 | None:intergenic | 50.0% | |
| TGAGAGGAAACATCAGCTGC+GGG | - | chr5_1:15282316-15282335 | None:intergenic | 50.0% | |
| ATTGAAATCGGGAGACAGGC+TGG | + | chr5_1:15282834-15282853 | Msa0719800:CDS | 50.0% | |
| GTCATTCCTATCTCGGCAAG+TGG | + | chr5_1:15283079-15283098 | Msa0719800:CDS | 50.0% | |
| GCGGGAATGTTGGATGAAGT+TGG | - | chr5_1:15283169-15283188 | None:intergenic | 50.0% | |
| TCGAGGTTGTCAAAGGCAGA+AGG | + | chr5_1:15283545-15283564 | Msa0719800:intron | 50.0% | |
| TAAATGGTGGCACACCATGG+CGG | - | chr5_1:15283673-15283692 | None:intergenic | 50.0% | |
| TTCCGAGAATGCAGCTCTCA+AGG | + | chr5_1:15284562-15284581 | Msa0719800:CDS | 50.0% | |
| ! | ACTTCCCCTGGTTTGAACTC+GGG | + | chr5_1:15284663-15284682 | Msa0719800:intron | 50.0% |
| AAGTCCCGAGTTCAAACCAG+GGG | - | chr5_1:15284670-15284689 | None:intergenic | 50.0% | |
| CAAGTCCCGAGTTCAAACCA+GGG | - | chr5_1:15284671-15284690 | None:intergenic | 50.0% | |
| ACAAGTCCCGAGTTCAAACC+AGG | - | chr5_1:15284672-15284691 | None:intergenic | 50.0% | |
| CTGGAGAGCTCCTGGAAATA+AGG | - | chr5_1:15284853-15284872 | None:intergenic | 50.0% | |
| CTTATTTCCAGGAGCTCTCC+AGG | + | chr5_1:15284851-15284870 | Msa0719800:intron | 50.0% | |
| GATAAATCCTGGAGAGCTCC+TGG | - | chr5_1:15284861-15284880 | None:intergenic | 50.0% | |
| AGAGACTTGGGGAACAACCA+GGG | + | chr5_1:15285107-15285126 | Msa0719800:CDS | 50.0% | |
| !! | CGCGCTCTTGCTATTGAGTT+AGG | - | chr5_1:15285231-15285250 | None:intergenic | 50.0% |
| !! | GCAAGAGCGCGATCTTGTTT+TGG | + | chr5_1:15285240-15285259 | Msa0719800:three_prime_UTR | 50.0% |
| GACGCCATGAATCCATGTGG+AGG | - | chr5_1:15280107-15280126 | None:intergenic | 55.0% | |
| ! | CCCTTATATGTGGGGTGTCC+AGG | + | chr5_1:15280142-15280161 | Msa0719800:CDS | 55.0% |
| TGCTCATCCATCCATGCCTC+CGG | + | chr5_1:15281629-15281648 | Msa0719800:CDS | 55.0% | |
| GAGGCCTCAGCAATACCGTT+TGG | - | chr5_1:15281776-15281795 | None:intergenic | 55.0% | |
| CCATCAGTTTCCATGCTGGC+AGG | - | chr5_1:15281934-15281953 | None:intergenic | 55.0% | |
| CCTGCCAGCATGGAAACTGA+TGG | + | chr5_1:15281931-15281950 | Msa0719800:CDS | 55.0% | |
| ACAGCGGGGACATCTGCTAA+TGG | + | chr5_1:15282054-15282073 | Msa0719800:CDS | 55.0% | |
| TGGATGCACTACGTCACGCA+AGG | - | chr5_1:15282119-15282138 | None:intergenic | 55.0% | |
| TGTAGGGGTCCTCAGGCATT+AGG | - | chr5_1:15282456-15282475 | None:intergenic | 55.0% | |
| GTAACTGTGTAGGGGTCCTC+AGG | - | chr5_1:15282463-15282482 | None:intergenic | 55.0% | |
| ! | GGGTGGTTACTGGTGGATCA+CGG | + | chr5_1:15283227-15283246 | Msa0719800:CDS | 55.0% |
| ! | GGTGGTTACTGGTGGATCAC+GGG | + | chr5_1:15283228-15283247 | Msa0719800:CDS | 55.0% |
| !! | GTTCCAAGGGCGTCGAGTTA+TGG | - | chr5_1:15283904-15283923 | None:intergenic | 55.0% |
| TAACTCGACGCCCTTGGAAC+AGG | + | chr5_1:15283904-15283923 | Msa0719800:intron | 55.0% | |
| AACTCGACGCCCTTGGAACA+GGG | + | chr5_1:15283905-15283924 | Msa0719800:intron | 55.0% | |
| GAAAGGGGAGTTACTTCCCC+TGG | + | chr5_1:15284651-15284670 | Msa0719800:intron | 55.0% | |
| GAGAGACTTGGGGAACAACC+AGG | + | chr5_1:15285106-15285125 | Msa0719800:CDS | 55.0% | |
| TGGACAGACAGAGGTTGTGC+AGG | + | chr5_1:15285165-15285184 | Msa0719800:CDS | 55.0% | |
| GGACAGACAGAGGTTGTGCA+GGG | + | chr5_1:15285166-15285185 | Msa0719800:CDS | 55.0% | |
| GGTTGTGCAGGGTGGTCATT+AGG | + | chr5_1:15285177-15285196 | Msa0719800:CDS | 55.0% | |
| GGAACTCGTGGGTCGTCGTA+CGG | - | chr5_1:15278972-15278991 | None:intergenic | 60.0% | |
| GTTCGCGGAGAGGAACTCGT+GGG | - | chr5_1:15278983-15279002 | None:intergenic | 60.0% | |
| TGTTCGCGGAGAGGAACTCG+TGG | - | chr5_1:15278984-15279003 | None:intergenic | 60.0% | |
| ! | TCAACCTGCGACGTTGGTGG+CGG | - | chr5_1:15279843-15279862 | None:intergenic | 60.0% |
| CCAGTGCTAGTGGTGGTCGA+AGG | - | chr5_1:15279953-15279972 | None:intergenic | 60.0% | |
| CCTTCGACCACCACTAGCAC+TGG | + | chr5_1:15279950-15279969 | Msa0719800:CDS | 60.0% | |
| TCCTGACTGGGCCAGCTTTC+AGG | + | chr5_1:15279982-15280001 | Msa0719800:CDS | 60.0% | |
| ACCTGAAAGCTGGCCCAGTC+AGG | - | chr5_1:15279986-15280005 | None:intergenic | 60.0% | |
| GGGAAACACTCCTGCCAGCA+TGG | + | chr5_1:15281921-15281940 | Msa0719800:intron | 60.0% | |
| ! | GGAGCACCACTTGCCGAGAT+AGG | - | chr5_1:15283088-15283107 | None:intergenic | 60.0% |
| ATCTCGGCAAGTGGTGCTCC+TGG | + | chr5_1:15283088-15283107 | Msa0719800:CDS | 60.0% | |
| ! | GGTGCTCCTGGAGCTGTTTC+TGG | + | chr5_1:15283100-15283119 | Msa0719800:CDS | 60.0% |
| TCCAACATTCCCGCTCTCCG+CGG | + | chr5_1:15283175-15283194 | Msa0719800:CDS | 60.0% | |
| TGGTAGACGGCACCTTTCCG+CGG | - | chr5_1:15283195-15283214 | None:intergenic | 60.0% | |
| ! | GGTGCCGTCTACCACAGTTG+CGG | + | chr5_1:15283201-15283220 | Msa0719800:CDS | 60.0% |
| GTGCCGTCTACCACAGTTGC+GGG | + | chr5_1:15283202-15283221 | Msa0719800:CDS | 60.0% | |
| CCTCCCGCAACTGTGGTAGA+CGG | - | chr5_1:15283208-15283227 | None:intergenic | 60.0% | |
| CGTCTACCACAGTTGCGGGA+GGG | + | chr5_1:15283206-15283225 | Msa0719800:CDS | 60.0% | |
| GTCTACCACAGTTGCGGGAG+GGG | + | chr5_1:15283207-15283226 | Msa0719800:CDS | 60.0% | |
| TGGCGGCGCCATAGACGAAA+TGG | - | chr5_1:15283595-15283614 | None:intergenic | 60.0% | |
| TCCACCATGCCATTCCGCCA+TGG | + | chr5_1:15283656-15283675 | Msa0719800:intron | 60.0% | |
| ! | ACCATGGCGGAATGGCATGG+TGG | - | chr5_1:15283660-15283679 | None:intergenic | 60.0% |
| ! | CACACCATGGCGGAATGGCA+TGG | - | chr5_1:15283663-15283682 | None:intergenic | 60.0% |
| GAGCCATAACTCGACGCCCT+TGG | + | chr5_1:15283898-15283917 | Msa0719800:intron | 60.0% | |
| ACTCGACGCCCTTGGAACAG+GGG | + | chr5_1:15283906-15283925 | Msa0719800:intron | 60.0% | |
| GGGAATCTGCTCGGAGATCC+AGG | + | chr5_1:15284328-15284347 | Msa0719800:CDS | 60.0% | |
| GAGATCCAGGTTGCGCAAGC+AGG | + | chr5_1:15284341-15284360 | Msa0719800:CDS | 60.0% | |
| CATCACCTGCTTGCGCAACC+TGG | - | chr5_1:15284349-15284368 | None:intergenic | 60.0% | |
| CAGACAGAGGTTGTGCAGGG+TGG | + | chr5_1:15285169-15285188 | Msa0719800:CDS | 60.0% | |
| CTCGTGGGTCGTCGTACGGT+GGG | - | chr5_1:15278968-15278987 | None:intergenic | 65.0% | |
| ACTCGTGGGTCGTCGTACGG+TGG | - | chr5_1:15278969-15278988 | None:intergenic | 65.0% | |
| TGGTGGTCGAAGGCTGCTCC+TGG | - | chr5_1:15279943-15279962 | None:intergenic | 65.0% | |
| TCCGCGGAGAGCGGGAATGT+TGG | - | chr5_1:15283179-15283198 | None:intergenic | 65.0% | |
| CATTCCCGCTCTCCGCGGAA+AGG | + | chr5_1:15283180-15283199 | Msa0719800:CDS | 65.0% | |
| CCGTCTACCACAGTTGCGGG+AGG | + | chr5_1:15283205-15283224 | Msa0719800:CDS | 65.0% | |
| TACCACAGTTGCGGGAGGGG+TGG | + | chr5_1:15283210-15283229 | Msa0719800:CDS | 65.0% | |
| AACCACCCCTCCCGCAACTG+TGG | - | chr5_1:15283215-15283234 | None:intergenic | 65.0% | |
| GTTGCGGGAGGGGTGGTTAC+TGG | + | chr5_1:15283217-15283236 | Msa0719800:CDS | 65.0% | |
| ! | GGTGGCACACCATGGCGGAA+TGG | - | chr5_1:15283668-15283687 | None:intergenic | 65.0% |
| GACACCGCCACCAACGTCGC+AGG | + | chr5_1:15279836-15279855 | Msa0719800:CDS | 70.0% | |
| GCGGGGCCAGAAACAGCTCC+AGG | - | chr5_1:15283109-15283128 | None:intergenic | 70.0% | |
| GGCACCTTTCCGCGGAGAGC+GGG | - | chr5_1:15283187-15283206 | None:intergenic | 70.0% | |
| CGGCACCTTTCCGCGGAGAG+CGG | - | chr5_1:15283188-15283207 | None:intergenic | 70.0% | |
| GCGGGAGGGGTGGTTACTGG+TGG | + | chr5_1:15283220-15283239 | Msa0719800:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15278936 | 15285565 | 15278936 | ID=Msa0719800;Name=Msa0719800 |
| chr5_1 | mRNA | 15278936 | 15285565 | 15278936 | ID=Msa0719800-mRNA-1;Parent=Msa0719800;Name=Msa0719800-mRNA-1;_AED=0.06;_eAED=0.06;_QI=358|1|1|1|0.91|0.84|13|367|402 |
| chr5_1 | exon | 15278936 | 15279249 | 15278936 | ID=Msa0719800-mRNA-1:exon:5878;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15279745 | 15279857 | 15279745 | ID=Msa0719800-mRNA-1:exon:5879;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15279944 | 15280003 | 15279944 | ID=Msa0719800-mRNA-1:exon:5880;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15280089 | 15280163 | 15280089 | ID=Msa0719800-mRNA-1:exon:5881;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15281561 | 15281650 | 15281561 | ID=Msa0719800-mRNA-1:exon:5882;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15281740 | 15281796 | 15281740 | ID=Msa0719800-mRNA-1:exon:5883;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15281922 | 15282091 | 15281922 | ID=Msa0719800-mRNA-1:exon:5884;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15282616 | 15282673 | 15282616 | ID=Msa0719800-mRNA-1:exon:5885;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15282826 | 15282868 | 15282826 | ID=Msa0719800-mRNA-1:exon:5886;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15282990 | 15283279 | 15282990 | ID=Msa0719800-mRNA-1:exon:5887;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15284285 | 15284362 | 15284285 | ID=Msa0719800-mRNA-1:exon:5888;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15284458 | 15284583 | 15284458 | ID=Msa0719800-mRNA-1:exon:5889;Parent=Msa0719800-mRNA-1 |
| chr5_1 | exon | 15285106 | 15285565 | 15285106 | ID=Msa0719800-mRNA-1:exon:5890;Parent=Msa0719800-mRNA-1 |
| chr5_1 | five_prime_UTR | 15278936 | 15279249 | 15278936 | ID=Msa0719800-mRNA-1:five_prime_utr;Parent=Msa0719800-mRNA-1 |
| chr5_1 | five_prime_UTR | 15279745 | 15279788 | 15279745 | ID=Msa0719800-mRNA-1:five_prime_utr;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15279789 | 15279857 | 15279789 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15279944 | 15280003 | 15279944 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15280089 | 15280163 | 15280089 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15281561 | 15281650 | 15281561 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15281740 | 15281796 | 15281740 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15281922 | 15282091 | 15281922 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15282616 | 15282673 | 15282616 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15282826 | 15282868 | 15282826 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15282990 | 15283279 | 15282990 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15284285 | 15284362 | 15284285 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15284458 | 15284583 | 15284458 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | CDS | 15285106 | 15285198 | 15285106 | ID=Msa0719800-mRNA-1:cds;Parent=Msa0719800-mRNA-1 |
| chr5_1 | three_prime_UTR | 15285199 | 15285565 | 15285199 | ID=Msa0719800-mRNA-1:three_prime_utr;Parent=Msa0719800-mRNA-1 |
| Gene Sequence |
| Protein sequence |
