AlfalfaGEDB | Msa0721290

M. sativa cultivar zhongmu-4 / Msa0721290

KEGG: -
GO: GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007275 GO:0008150 GO:0009719 GO:0009725 GO:0009733 GO:0009791 GO:0009889 GO:0009908 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048367 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0090567 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721290	XP_003616115.1	96.292	863	10	1	1	863	1	841	0.0	1710

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721290	sp\|Q9FGV1\|ARFH_ARATH	66.981	848	220	15	1	834	1	802	0.0	1061

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721290	G7KFN6	96.292	863	10	1	1	863	1	841	0.0	1710

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TFs/TRs:

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Gene ID	Type	Classification
Msa0721290	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721290	MtrunA17_Chr5g0433301	96.292	863	10	1	1	863	1	841	0.0	1710
Msa0721290	MtrunA17_Chr3g0109391	80.114	875	136	13	1	863	1	849	0.0	1348
Msa0721290	MtrunA17_Chr2g0285461	57.388	934	301	21	1	863	1	908	0.0	911
Msa0721290	MtrunA17_Chr8g0376771	73.450	516	103	11	1	512	1	486	0.0	731
Msa0721290	MtrunA17_Chr1g0156321	43.330	877	395	24	16	842	35	859	0.0	592
Msa0721290	MtrunA17_Chr4g0070181	63.341	431	132	8	16	444	15	421	3.92e-168	518
Msa0721290	MtrunA17_Chr4g0070181	50.459	109	54	0	717	825	974	1082	3.62e-29	125
Msa0721290	MtrunA17_Chr2g0301251	70.027	367	104	6	1	366	1	362	8.51e-165	509
Msa0721290	MtrunA17_Chr2g0301251	59.341	91	37	0	739	829	988	1078	1.10e-29	127
Msa0721290	MtrunA17_Chr8g0389081	69.591	342	102	2	21	361	29	369	1.90e-152	476

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721290	AT5G37020.1	66.981	848	220	15	1	834	1	802	0.0	1061
Msa0721290	AT5G37020.2	67.155	819	209	15	1	805	1	773	0.0	1021
Msa0721290	AT5G37020.3	64.447	751	209	14	98	834	1	707	0.0	878
Msa0721290	AT1G19220.1	55.491	519	193	11	1	509	1	491	6.84e-166	511
Msa0721290	AT1G19220.1	55.446	101	45	0	739	839	960	1060	2.22e-29	126
Msa0721290	AT1G19850.2	62.634	372	134	3	11	380	30	398	4.86e-158	485
Msa0721290	AT1G19850.2	53.684	95	44	0	739	833	784	878	2.26e-26	116
Msa0721290	AT1G19850.1	62.634	372	134	3	11	380	41	409	5.59e-158	485
Msa0721290	AT1G19850.1	53.684	95	44	0	739	833	795	889	2.16e-26	116
Msa0721290	AT5G20730.2	67.480	369	114	6	4	370	5	369	3.90e-157	490

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Find 261 sgRNAs with CRISPR-Local

Find 677 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGTGTCTTTATAAAG+AGG	0.421389	5_1:+17752928	Msa0721290:five_prime_UTR
AAACCAGATTTCATAGATTC+AGG	0.326405	5_1:+17760581	Msa0721290:CDS
AAACGACACCTTCTTACCAC+AGG	0.613976	5_1:+17757138	Msa0721290:CDS
AAAGATTCTCCGCTAGCCCT+TGG	0.539997	5_1:-17760421	None:intergenic
AACAAATACACTCCAGCCTG+TGG	0.623923	5_1:-17757154	None:intergenic
AACAGTCACCTCAACAATCA+TGG	0.424537	5_1:+17760717	Msa0721290:CDS
AACATCAGGAATGAGTCAGC+AGG	0.513653	5_1:+17752987	Msa0721290:CDS
AACTAGAGTGTTGCTTCTGA+TGG	0.464826	5_1:-17760538	None:intergenic
AAGATCCTCTTAGATCAGGC+TGG	0.555768	5_1:+17761278	Msa0721290:CDS
AAGGGAATGTAGATCTATTA+AGG	0.311704	5_1:+17760270	Msa0721290:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTCTTCAGTTTCATTTCAA+TGG	+	chr5_1:17752480-17752499	Msa0721290:five_prime_UTR	30.0%
CCTTAAAAAACCAACATCAT+GGG	-	chr5_1:17752748-17752767	None:intergenic	30.0%
ACCTTAAAAAACCAACATCA+TGG	-	chr5_1:17752749-17752768	None:intergenic	30.0%
GGTATGAGTGAATGTAATAA+TGG	+	chr5_1:17752844-17752863	Msa0721290:five_prime_UTR	30.0%
ATTGAAGCATAAACAAAAGG+GGG	-	chr5_1:17753286-17753305	None:intergenic	30.0%
TGTGAAATTATGGTAATAGG+AGG	+	chr5_1:17753345-17753364	Msa0721290:intron	30.0%
GTGAAATTATGGTAATAGGA+GGG	+	chr5_1:17753346-17753365	Msa0721290:intron	30.0%
TGAAATTATGGTAATAGGAG+GGG	+	chr5_1:17753347-17753366	Msa0721290:intron	30.0%
AAACAATAAGGAGTTGTAGT+AGG	-	chr5_1:17753504-17753523	None:intergenic	30.0%
TACACAACACTGAAACAATA+AGG	-	chr5_1:17753516-17753535	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	17752345	17762282	17752345	ID=Msa0721290;Name=Msa0721290
chr5_1	mRNA	17752345	17762282	17752345	ID=Msa0721290-mRNA-1;Parent=Msa0721290;Name=Msa0721290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=631\|0.92\|0.92\|1\|1\|1\|14\|389\|863
chr5_1	exon	17752345	17753018	17752345	ID=Msa0721290-mRNA-1:exon:6773;Parent=Msa0721290-mRNA-1
chr5_1	exon	17753364	17753479	17753364	ID=Msa0721290-mRNA-1:exon:6774;Parent=Msa0721290-mRNA-1
chr5_1	exon	17753669	17753767	17753669	ID=Msa0721290-mRNA-1:exon:6775;Parent=Msa0721290-mRNA-1
chr5_1	exon	17753876	17753932	17753876	ID=Msa0721290-mRNA-1:exon:6776;Parent=Msa0721290-mRNA-1
chr5_1	exon	17754021	17754176	17754021	ID=Msa0721290-mRNA-1:exon:6777;Parent=Msa0721290-mRNA-1
chr5_1	exon	17754259	17754343	17754259	ID=Msa0721290-mRNA-1:exon:6778;Parent=Msa0721290-mRNA-1
chr5_1	exon	17757130	17757220	17757130	ID=Msa0721290-mRNA-1:exon:6779;Parent=Msa0721290-mRNA-1
chr5_1	exon	17757316	17757480	17757316	ID=Msa0721290-mRNA-1:exon:6780;Parent=Msa0721290-mRNA-1
chr5_1	exon	17757566	17757688	17757566	ID=Msa0721290-mRNA-1:exon:6781;Parent=Msa0721290-mRNA-1
chr5_1	exon	17759071	17759146	17759071	ID=Msa0721290-mRNA-1:exon:6782;Parent=Msa0721290-mRNA-1
chr5_1	exon	17759657	17759804	17759657	ID=Msa0721290-mRNA-1:exon:6783;Parent=Msa0721290-mRNA-1
chr5_1	exon	17760012	17761075	17760012	ID=Msa0721290-mRNA-1:exon:6784;Parent=Msa0721290-mRNA-1
chr5_1	exon	17761169	17761359	17761169	ID=Msa0721290-mRNA-1:exon:6785;Parent=Msa0721290-mRNA-1
chr5_1	exon	17761716	17762282	17761716	ID=Msa0721290-mRNA-1:exon:6786;Parent=Msa0721290-mRNA-1
chr5_1	five_prime_UTR	17752345	17752975	17752345	ID=Msa0721290-mRNA-1:five_prime_utr;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17752976	17753018	17752976	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17753364	17753479	17753364	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17753669	17753767	17753669	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17753876	17753932	17753876	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17754021	17754176	17754021	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17754259	17754343	17754259	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17757130	17757220	17757130	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17757316	17757480	17757316	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17757566	17757688	17757566	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17759071	17759146	17759071	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17759657	17759804	17759657	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17760012	17761075	17760012	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17761169	17761359	17761169	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	CDS	17761716	17761893	17761716	ID=Msa0721290-mRNA-1:cds;Parent=Msa0721290-mRNA-1
chr5_1	three_prime_UTR	17761894	17762282	17761894	ID=Msa0721290-mRNA-1:three_prime_utr;Parent=Msa0721290-mRNA-1

Gene Sequence

>Msa0721290

ATGAAGCTTTCAACATCAGGAATGAGTCAGCAGGGTCATGAAGGAGGGGAGAAAAAGTGTTTGAATTCTGAGCTATGGCATGCATGTGCGGGTCCCTTAGTTTCTCTACCAACTTCAGGGACTCGTGTGGTTTACTTCCCTCAAGGTCATAGTGAGCAGGTTTCTGCCACAACCAACAGAGAAATTGATGGACAAATTCCGAATTATCCTAGCTTGCCGCCTCAGTTGATATGCCAACTTCATAATGTTACAATGCATGCAGATGTTGAAACAGATGAAGTGTATGCTCAGATGACGCTACAGCCGTTGACTCCGCAAGAGCAGAAAGATACGTTTCTTCCTATGGAATTAGGGATTCCAAGTAAGCAGCCTACAAATTATTTTTGCAAGACATTGACGGCGAGTGATACAAGCACACATGGAGGGTTCTCTGTTCCTCGTCGTGCAGCTGAGAAAGTTTTTCCTCCATTGGATTTCTCACAGCAACCTCCTGCTCAAGAACTAATTGCTAGGGATCTCCATGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGACACCTTCTTACCACAGGCTGGAGTGTATTTGTTAGTGCAAAAAGACTAGTAGCTGGAGATTCTGTGCTTTTCATTTGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGTGCCAGTAGGCCACAAACTGTTATGCCATCATCAGTTCTTTCAAGCGATAGCATGCACATTGGACTTCTTGCAGCTGCAGCACATGCTGCAGCAACTAATAGCTGCTTTACGGTGTTCTTTAATCCAAGGGCTAGTCCATCCGAATTCGTCATACCACTCTCCAAATATATCAAAGCTGTGTACCATACACGCGTTTCTGTCGGTATGCGTTTCAGGATGCTTTTTGAGACTGAAGAATCAAGTGTCCGCAGGTACATGGGTACTATAACTAGCATAAGTGACATGGATCCTGTTCGGTGGCCAAATTCTCATTGGAGGTCTGTTAAGGTTGGTTGGGATGAATCGACAGCTGGGGAGAGACAGCCACGGGTATCGTTATGGGAAATTGAGCCCTTAACTACATTTCCAATGTATCCATCACTATTTCCCCTTAGATTGAAACGACCATGGCATCCTGGCACTTCTTCTTTTCTTGTTGGCTGTGGTGGTTTTGAGGACACACTTCTTTTGTCTCCTTTCTTTACAAAGGATGTTGTTACAGATGGCAGAGATGAGGCAACTAATGGACTGATGTGGATGCGAGGCGGTCCTGGAGACCATGGTCTTAACTCCATGAATTTTCAAGGTGCTGGATTGTTGCCCTGGATGCAGCCAAGACTCGATCCAACTTTGCTAGGAAATGATCATAATCAGCAATACCAAGCCATGTTGGCTGCTGCTGGTTTGCAGAACCAAGGGAATGTAGATCTATTAAGGCAACAGATGATGAATTTTCAACAGCCTTTCAACTATCAACAATCAGGAAACCTCAGTCCTATGCAGCTTCAGCAACAGCAAGCAATTCAACAATCCGTATCGACTAATAATATCATGCAACCACAAGGCCAAGGGCTAGCGGAGAATCTTTCTCAGCACATCCTTCAGAAATCGCACAACAATCGTGAAAACCAAACACAGCAACAAAGTTATCAAGATTCAGTTTTAATTCAAGGTGATCCGCTCCATCAGAAGCAACACTCTAGTTTGCCTTCACCGTCATACTCAAAACCAGATTTCATAGATTCAGGCATGAAGTTTGCTGCTTCGGTTTCACCGGGTCAAAACATGCTTGGTTCACTTTCTTCTGAAGGGAGTGGCAATCTGTTGAATTTATCCAGAAGTGGTCATTCTATGCTGACTGAACAGTCACCTCAACAATCATGGGCCTCAAAGTATTCACCTTCGCAGGTTGATGCCATTGGCAATTCGATGTCGCATGTGCAGTATTCCGGAAGAGATACATCGATCGTACAACCACATGGCAACTCAGATGCCCAAAATTCTGTTCTGTTTGGGGTCAATATCGATTCGTCTGGCCTTCTGCTCCCTACCACTGTCCCCCGTTATACTACTGCATCATCTCATGCCGATGCATCGACAATGCCGTTAGGGGAGTCTAGTTTCCAGGGTTCTCCATATCCTTGCATGCAAGATTCATCGGAGTTGTTGCAAAGTGCAGGGCAAGTTGATGCGCAAAACCAGACACCGATATTTGTGAAGGTATACAAATCAGGTTCAGTAGGGCGCTCACTTGACATCTCGCGGTTCAACAGCTATCACGAGCTGCGGGAGGAGTTGGCTCAGATGTTTGGAATTGAGGGGAAATTTGAAGATCCTCTTAGATCAGGCTGGCAGCTTGTATTTGTCGACAGGGAGAACGATGTTCTTCTCCTTGGAGACGATCCGTGGGAATCATTTGTGAATAATGTTTGGTATATCAAAATACTTTCTCCTGAAGATATTCAGAAAATGGGAGAAGAAGCCATAGAATCCCTTGGTCCAAGTTCTGGACAAAGGATGAACAACGCTGGTGCAGAATCTCACGACATTGTTTCTGGACTACCATCATTAGGCTCACTTGAATACTGA

Protein sequence

>Msa0721290

MKLSTSGMSQQGHEGGEKKCLNSELWHACAGPLVSLPTSGTRVVYFPQGHSEQVSATTNREIDGQIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKDTFLPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRASRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITSISDMDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWHPGTSSFLVGCGGFEDTLLLSPFFTKDVVTDGRDEATNGLMWMRGGPGDHGLNSMNFQGAGLLPWMQPRLDPTLLGNDHNQQYQAMLAAAGLQNQGNVDLLRQQMMNFQQPFNYQQSGNLSPMQLQQQQAIQQSVSTNNIMQPQGQGLAENLSQHILQKSHNNRENQTQQQSYQDSVLIQGDPLHQKQHSSLPSPSYSKPDFIDSGMKFAASVSPGQNMLGSLSSEGSGNLLNLSRSGHSMLTEQSPQQSWASKYSPSQVDAIGNSMSHVQYSGRDTSIVQPHGNSDAQNSVLFGVNIDSSGLLLPTTVPRYTTASSHADASTMPLGESSFQGSPYPCMQDSSELLQSAGQVDAQNQTPIFVKVYKSGSVGRSLDISRFNSYHELREELAQMFGIEGKFEDPLRSGWQLVFVDRENDVLLLGDDPWESFVNNVWYIKILSPEDIQKMGEEAIESLGPSSGQRMNNAGAESHDIVSGLPSLGSLEY*