AlfalfaGEDB | Msa0721760

M. sativa cultivar zhongmu-4 / Msa0721760

KEGG: -
GO: GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0036211 GO:0038023 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0140096 GO:1901564
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721760	XP_003613165.2	98.013	604	12	0	1	604	1	604	0.0	1231

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721760	sp\|F4IB81\|LYK3_ARATH	50.932	322	152	1	289	604	321	642	2.86e-111	350

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721760	G7JZ13	98.013	604	12	0	1	604	1	604	0.0	1231

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721760	MtrunA17_Chr5g0413071	98.013	604	12	0	1	604	1	604	0.0	1231
Msa0721760	MtrunA17_Chr8g0340721	35.276	635	340	14	34	604	31	658	5.53e-123	378
Msa0721760	MtrunA17_Chr5g0439631	35.171	526	296	14	86	585	86	592	1.98e-90	292
Msa0721760	MtrunA17_Chr2g0289131	34.122	592	338	18	43	596	22	599	2.68e-90	291
Msa0721760	MtrunA17_Chr5g0439561	31.877	618	337	23	31	596	36	621	2.11e-87	285
Msa0721760	MtrunA17_Chr5g0439701	33.209	536	322	14	86	604	87	603	1.47e-86	281
Msa0721760	MtrunA17_Chr3g0119241	43.631	314	172	3	292	605	305	613	1.64e-85	279
Msa0721760	MtrunA17_Chr5g0439801	32.933	583	298	21	38	585	23	547	5.02e-81	266
Msa0721760	MtrunA17_Chr5g0439571	33.016	630	337	22	14	598	24	613	1.66e-77	258
Msa0721760	MtrunA17_Chr5g0439601	33.272	544	295	22	86	588	85	601	5.71e-76	254

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0721760	AT1G51940.1	50.932	322	152	1	289	604	321	642	2.91e-112	350
Msa0721760	AT3G21630.1	36.111	540	310	15	85	606	86	608	6.21e-95	304
Msa0721760	AT5G02800.1	39.597	298	168	6	297	589	61	351	1.72e-65	219
Msa0721760	AT2G28590.1	39.667	300	169	6	297	591	86	378	9.79e-65	219
Msa0721760	AT4G02010.1	35.222	406	224	14	215	608	299	677	1.24e-64	226
Msa0721760	AT3G20530.1	38.487	304	176	5	296	594	69	366	2.32e-64	217
Msa0721760	AT1G61860.1	40.339	295	164	6	296	585	72	359	5.50e-64	216
Msa0721760	AT1G07870.1	36.196	326	194	7	288	608	82	398	2.61e-63	215
Msa0721760	AT5G18610.1	38.413	315	182	6	296	605	70	377	3.37e-63	217
Msa0721760	AT5G18610.2	38.413	315	182	6	296	605	70	377	3.37e-63	217

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Find 107 sgRNAs with CRISPR-Local

Find 244 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTGATGTATTTGCATT+TGG	0.311886	5_1:+18750660	Msa0721760:CDS
AAAATATCCACTAAGATCTT+TGG	0.347454	5_1:-18747930	None:intergenic
AAAGGGTCGCCACTTTACCA+TGG	0.600953	5_1:+18748268	Msa0721760:CDS
AAATGCTACCATTGATGGCA+TGG	0.604146	5_1:+18748168	Msa0721760:CDS
AACATTCATAGATATTGGTT+GGG	0.476299	5_1:+18748222	Msa0721760:CDS
AACCAATATCTATGAATGTT+GGG	0.434477	5_1:-18748219	None:intergenic
AACCCAACATTCATAGATAT+TGG	0.283001	5_1:+18748217	Msa0721760:CDS
AATATTCCAAGATGAGGACC+CGG	0.659586	5_1:+18750914	Msa0721760:CDS
AATGGGAAGCATCACTAGGT+GGG	0.567871	5_1:+18751832	Msa0721760:CDS
ACAACGATCTCTTTCATTTC+AGG	0.260966	5_1:-18751777	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAACACCAAAGATCTTAG+TGG	+	chr5_1:18747923-18747942	Msa0721760:CDS	30.0%
ATATCCACAGAAGTTTCATT+AGG	-	chr5_1:18747980-18747999	None:intergenic	30.0%
TTATTTATAGTGGTCAAGCT+TGG	+	chr5_1:18748008-18748027	Msa0721760:CDS	30.0%
GTAACAATACATATTCCTTG+TGG	+	chr5_1:18748064-18748083	Msa0721760:CDS	30.0%
AGCAAAAGAGAAATTGATGT+TGG	-	chr5_1:18748148-18748167	None:intergenic	30.0%
ATATCTATGAATGTTGGGTT+AGG	-	chr5_1:18748217-18748236	None:intergenic	30.0%
AACCCAACATTCATAGATAT+TGG	+	chr5_1:18748217-18748236	Msa0721760:CDS	30.0%
CAACCAATATCTATGAATGT+TGG	-	chr5_1:18748223-18748242	None:intergenic	30.0%
CAACATTCATAGATATTGGT+TGG	+	chr5_1:18748221-18748240	Msa0721760:CDS	30.0%
CCTTAGAATGAAAATGATCA+AGG	-	chr5_1:18748938-18748957	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	18747647	18752184	18747647	ID=Msa0721760;Name=Msa0721760
chr5_1	mRNA	18747647	18752184	18747647	ID=Msa0721760-mRNA-1;Parent=Msa0721760;Name=Msa0721760-mRNA-1;_AED=0.06;_eAED=0.07;_QI=0\|0\|0\|0.90\|1\|1\|11\|0\|615
chr5_1	exon	18747647	18748295	18747647	ID=Msa0721760-mRNA-1:exon:7022;Parent=Msa0721760-mRNA-1
chr5_1	exon	18748869	18749072	18748869	ID=Msa0721760-mRNA-1:exon:7023;Parent=Msa0721760-mRNA-1
chr5_1	exon	18749318	18749457	18749318	ID=Msa0721760-mRNA-1:exon:7024;Parent=Msa0721760-mRNA-1
chr5_1	exon	18749565	18749654	18749565	ID=Msa0721760-mRNA-1:exon:7025;Parent=Msa0721760-mRNA-1
chr5_1	exon	18749944	18750049	18749944	ID=Msa0721760-mRNA-1:exon:7026;Parent=Msa0721760-mRNA-1
chr5_1	exon	18750183	18750334	18750183	ID=Msa0721760-mRNA-1:exon:7027;Parent=Msa0721760-mRNA-1
chr5_1	exon	18750418	18750515	18750418	ID=Msa0721760-mRNA-1:exon:7028;Parent=Msa0721760-mRNA-1
chr5_1	exon	18750632	18750770	18750632	ID=Msa0721760-mRNA-1:exon:7029;Parent=Msa0721760-mRNA-1
chr5_1	exon	18750906	18751004	18750906	ID=Msa0721760-mRNA-1:exon:7030;Parent=Msa0721760-mRNA-1
chr5_1	exon	18751729	18751863	18751729	ID=Msa0721760-mRNA-1:exon:7031;Parent=Msa0721760-mRNA-1
chr5_1	exon	18752149	18752184	18752149	ID=Msa0721760-mRNA-1:exon:7032;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18747647	18748295	18747647	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18748869	18749072	18748869	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18749318	18749457	18749318	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18749565	18749654	18749565	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18749944	18750049	18749944	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18750183	18750334	18750183	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18750418	18750515	18750418	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18750632	18750770	18750632	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18750906	18751004	18750906	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18751729	18751863	18751729	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1
chr5_1	CDS	18752149	18752184	18752149	ID=Msa0721760-mRNA-1:cds;Parent=Msa0721760-mRNA-1

Gene Sequence

>Msa0721760

ATGGCTTCTCTAATTCAACTTCTTTCAATTTTTCTACCTCTTCTAGCATCTTCATTACCAACTATATTTTCCATTGAAGTTTCAATGAAAAAAGCTTACATGGAACCTTTTAAATGCTCTACAAAGATGAGAACATGCAATGCATCACTCTACCATATAAACTACAATCACAACATAGAACAAATAGCTAATTTTTATTCTATTGATCCTTCACAAATCAAACCAATAATTCGTAGCACAAAACAAGATTACCTAGTAAAAGTGCCTTGTTCTTGCAAAAACACCAAAGATCTTAGTGGATATTTTTACGAAACAACCTACAAAGTGAGTCCTAATGAAACTTCTGTGGATATTATGAATCTTATTTATAGTGGTCAAGCTTGGCAAGTTAACGAAGATTTGGTTGCAAATGAGAATGTAACAATACATATTCCTTGTGGATGTTCAGAATTTGAGTCGCAAATTGTTGTTACATATTCTGTTCAGCAGGGTGATACACCAACATCAATTTCTCTTTTGCTAAATGCTACCATTGATGGCATGGTGAGAATGAACCAAATTTTGGGTCCTAACCCAACATTCATAGATATTGGTTGGGTGTTATATGTTCCTAAGGAATTAAAAGGGTCGCCACTTTACCATGGAAAAGAAAAGAAACACAAGTGGGTGATAATTATTGGTATCTTAGTGAGTGTGACATTACTTTCAGTTGTTACCTTGATCATTTTCATTCTAAGGAGAAATAAAGCTTATGAAACCAGCAAATATGATCCAAAAACTGTCTCTAAAAGATCATTTGGCAATAGAACTATTTCCTTAAGGAATCATGAGTTTCATAAAGAATATATGGAAGATGCAACACAATTTGATTCAGAAAGACCAGTAATTTATGATTTTGAGGAGATTGAACATGCTACAAATAACTTTGATGAAACTAGAAGGATTGGAGTTGGTGGATATGGTACGGTCTATTTTGGAATGCTGGAAGAGAAAGAGGTTGCTGTGAAGAAAATGAAGTCTAACAAATCCAAAGAGTTCTATGCAGAACTCAAAGCCTTATGCAAGATCCATCATATCAATATTGTGGAGTTGTTAGGATATGCAAGTGGAGATGATCACCTTTATTTGGTGTATGAGTATGTTCCTAATGGATCTCTAAGTGAGCACCTTCATGATCCCCTATTGAAAGGTCATCAACCTCTTTCTTGGTGTGCAAGAACTCAAATTGCACTTGATTCAGCAAAAGGTATTGAATACATACATGATTACACCAAAGCGCAATATGTGCACCGTGATATAAAGACTAGTAATATTCTTCTTGATGAGAAGCTGCGAGCCAAGGTAGCCGATTTCGGACTTGCAAAGCTAGTAGAAAGAACCAATGATGAAGAATTTCTAGCAACAAGACTTGTTGGAACACCAGGCTACCTTCCACCAGAATCTGTGAAGGAGCTTCAAGTGACAATAAAAACTGATGTATTTGCATTTGGAGTGGTTATGTCTGAATTGATAACAGGGAAACGTGCATTATTTCGTGACAACAAAGAAACTAATAGTATGAAATCACTTATTGCAGTTGTTAACAAAATATTCCAAGATGAGGACCCGGTTGCTGCTTTAGAAGCTGTTGTAGATGGAAATCTTCGACGTAATTATCCTATAGAAGGTGTCTACAAGATGGCAGAATTATCACGTTGGTGTTTGAGTGAAGAACCAGTGGACAGACCTGAAATGAAAGAGATCGTTGTGGCAGTGTCAAAGATAGTTATGTCTTCAATAGAATGGGAAGCATCACTAGGTGGGGACAGTCAGAATAAGAAGCCACTTGGTGGTCAAATTCCCAATTAG

Protein sequence

>Msa0721760

MASLIQLLSIFLPLLASSLPTIFSIEVSMKKAYMEPFKCSTKMRTCNASLYHINYNHNIEQIANFYSIDPSQIKPIIRSTKQDYLVKVPCSCKNTKDLSGYFYETTYKVSPNETSVDIMNLIYSGQAWQVNEDLVANENVTIHIPCGCSEFESQIVVTYSVQQGDTPTSISLLLNATIDGMVRMNQILGPNPTFIDIGWVLYVPKELKGSPLYHGKEKKHKWVIIIGILVSVTLLSVVTLIIFILRRNKAYETSKYDPKTVSKRSFGNRTISLRNHEFHKEYMEDATQFDSERPVIYDFEEIEHATNNFDETRRIGVGGYGTVYFGMLEEKEVAVKKMKSNKSKEFYAELKALCKIHHINIVELLGYASGDDHLYLVYEYVPNGSLSEHLHDPLLKGHQPLSWCARTQIALDSAKGIEYIHDYTKAQYVHRDIKTSNILLDEKLRAKVADFGLAKLVERTNDEEFLATRLVGTPGYLPPESVKELQVTIKTDVFAFGVVMSELITGKRALFRDNKETNSMKSLIAVVNKIFQDEDPVAALEAVVDGNLRRNYPIEGVYKMAELSRWCLSEEPVDRPEMKEIVVAVSKIVMSSIEWEASLGGDSQNKKPLGGQIPN*