Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723170 | AES96258.2 | 75.871 | 373 | 45 | 3 | 1 | 364 | 1 | 337 | 0.0 | 532 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723170 | sp|Q647G4|OL102_ARAHY | 55.474 | 137 | 60 | 1 | 10 | 146 | 1 | 136 | 3.00e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723170 | G7K2T2 | 75.871 | 373 | 45 | 3 | 1 | 364 | 1 | 337 | 0.0 | 532 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0723170 | TR | GNAT |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723170 | MtrunA17_Chr5g0414001 | 78.378 | 296 | 43 | 2 | 1 | 287 | 1 | 284 | 3.90e-154 | 436 |
| Msa0723170 | MtrunA17_Chr5g0414031 | 55.926 | 270 | 61 | 7 | 153 | 364 | 22 | 291 | 4.94e-77 | 241 |
| Msa0723170 | MtrunA17_Chr7g0227501 | 73.333 | 135 | 33 | 2 | 14 | 146 | 15 | 148 | 2.69e-43 | 149 |
| Msa0723170 | MtrunA17_Chr5g0413991 | 95.833 | 48 | 2 | 0 | 317 | 364 | 20 | 67 | 1.27e-26 | 102 |
| Msa0723170 | MtrunA17_Chr4g0058681 | 55.422 | 83 | 37 | 0 | 44 | 126 | 36 | 118 | 3.20e-24 | 99.0 |
| Msa0723170 | MtrunA17_Chr6g0449621 | 43.590 | 117 | 66 | 0 | 27 | 143 | 41 | 157 | 1.72e-16 | 77.4 |
| Msa0723170 | MtrunA17_Chr3g0139191 | 35.135 | 111 | 71 | 1 | 36 | 146 | 24 | 133 | 3.65e-16 | 75.5 |
| Msa0723170 | MtrunA17_Chr1g0196841 | 36.111 | 108 | 69 | 0 | 43 | 150 | 56 | 163 | 7.64e-16 | 75.1 |
| Msa0723170 | MtrunA17_Chr5g0414011 | 83.871 | 31 | 5 | 0 | 334 | 364 | 1 | 31 | 2.02e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0723170 | AT1G24040.3 | 56.701 | 194 | 69 | 2 | 185 | 363 | 80 | 273 | 2.90e-67 | 216 |
| Msa0723170 | AT1G24040.2 | 56.701 | 194 | 69 | 2 | 185 | 363 | 80 | 273 | 2.90e-67 | 216 |
| Msa0723170 | AT1G24040.1 | 56.701 | 194 | 69 | 2 | 185 | 363 | 80 | 273 | 2.90e-67 | 216 |
| Msa0723170 | AT3G01570.1 | 43.885 | 139 | 75 | 3 | 17 | 155 | 7 | 142 | 3.25e-30 | 115 |
| Msa0723170 | AT3G27660.1 | 50.000 | 116 | 57 | 1 | 40 | 155 | 43 | 157 | 7.40e-21 | 90.1 |
| Msa0723170 | AT3G27660.2 | 50.000 | 116 | 57 | 1 | 40 | 155 | 43 | 157 | 7.40e-21 | 90.1 |
| Msa0723170 | AT5G40420.1 | 53.846 | 104 | 48 | 0 | 43 | 146 | 48 | 151 | 2.50e-19 | 85.9 |
| Msa0723170 | AT5G51210.1 | 39.773 | 88 | 53 | 0 | 39 | 126 | 17 | 104 | 2.72e-17 | 78.6 |
| Msa0723170 | AT4G25140.1 | 38.776 | 98 | 55 | 1 | 28 | 125 | 27 | 119 | 6.72e-14 | 69.7 |
| Msa0723170 | AT5G07550.2 | 36.250 | 80 | 51 | 0 | 48 | 127 | 3 | 82 | 1.72e-11 | 60.8 |
| Msa0723170 | AT2G25890.2 | 44.828 | 87 | 48 | 0 | 40 | 126 | 44 | 130 | 3.04e-11 | 62.4 |
| Msa0723170 | AT2G25890.1 | 36.937 | 111 | 70 | 0 | 40 | 150 | 19 | 129 | 7.19e-11 | 60.5 |
Find 94 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACCAAATCCGGTTCAATTT+TGG | 0.113243 | 5_1:-20791659 | Msa0723170:CDS |
| CTTGCTGGACTCTCCCTTCT+TGG | 0.217986 | 5_1:-20792090 | Msa0723170:CDS |
| CCTGTAGAGGCCCTTGATCC+TGG | 0.232255 | 5_1:+20791902 | None:intergenic |
| ACATGTTGATATAACATTTC+GGG | 0.273357 | 5_1:+20791560 | None:intergenic |
| AACCAAAATTGAACCGGATT+TGG | 0.284192 | 5_1:+20791657 | None:intergenic |
| TTGAACCGGATTTGGTGTTT+TGG | 0.312879 | 5_1:+20791665 | None:intergenic |
| AACATGTTGATATAACATTT+CGG | 0.331289 | 5_1:+20791559 | None:intergenic |
| CAAGTGCTTGCCGTAATTAC+CGG | 0.339584 | 5_1:-20792141 | Msa0723170:CDS |
| GTTCCAGCCACCATTGTCAT+TGG | 0.345015 | 5_1:-20792009 | Msa0723170:CDS |
| TAATCAAATATTGTTTCATA+AGG | 0.361459 | 5_1:+20791530 | None:intergenic |
| TCTTGGAACACTCACTGGAC+TGG | 0.377988 | 5_1:-20792073 | Msa0723170:CDS |
| GAGGACTCGACGAGTGGTTT+TGG | 0.383378 | 5_1:+20791738 | None:intergenic |
| CTTGGAACACTCACTGGACT+GGG | 0.386557 | 5_1:-20792072 | Msa0723170:CDS |
| TGGCACTGTCCTTGTTCTCA+TGG | 0.386698 | 5_1:-20791942 | Msa0723170:CDS |
| GGAAGGATTCGAGGTGTTGC+AGG | 0.387564 | 5_1:+20791695 | None:intergenic |
| GGTGTACTGCTTGCACTTGC+TGG | 0.398295 | 5_1:-20792105 | Msa0723170:CDS |
| GTGTTGCAGGTTGGTTAGTT+CGG | 0.403050 | 5_1:+20791708 | None:intergenic |
| ATGGTGGCTGGAACAAGAAC+AGG | 0.405324 | 5_1:+20792018 | None:intergenic |
| TACTCGAACCAAAATTGAAC+CGG | 0.409292 | 5_1:+20791651 | None:intergenic |
| TACAGGAAGGCCGGTAATTA+CGG | 0.409924 | 5_1:+20792131 | None:intergenic |
| TCTGCGAGTAAACAGACTAT+TGG | 0.411736 | 5_1:+20791607 | None:intergenic |
| TTCGTCTCTGCAACATCAGC+AGG | 0.418356 | 5_1:+20790320 | None:intergenic |
| CTGTAGAGGCCCTTGATCCT+GGG | 0.419299 | 5_1:+20791903 | None:intergenic |
| CCTTAGGCCCTCAAAATCAT+TGG | 0.420597 | 5_1:-20791771 | Msa0723170:CDS |
| TATTTGATTAAACGAAGGAT+TGG | 0.433371 | 5_1:-20791517 | Msa0723170:CDS |
| ATTTGATTAAACGAAGGATT+GGG | 0.434126 | 5_1:-20791516 | Msa0723170:CDS |
| TCCCTTCTTGGAACACTCAC+TGG | 0.449866 | 5_1:-20792078 | Msa0723170:CDS |
| ATTCTTTCACTCTCCTCCTT+AGG | 0.453455 | 5_1:-20791787 | Msa0723170:CDS |
| CTGCGAGTAAACAGACTATT+GGG | 0.455560 | 5_1:+20791608 | None:intergenic |
| GGAAGTAGAGGAAGGATTCG+AGG | 0.455777 | 5_1:+20791686 | None:intergenic |
| ATAAGCGTAAGGCGAATCCT+TGG | 0.465649 | 5_1:+20791387 | None:intergenic |
| ATTCCCTCCAGGAGGGGCAT+TGG | 0.469054 | 5_1:-20790491 | Msa0723170:intron |
| TACTTCCAAAACACCAAATC+CGG | 0.469207 | 5_1:-20791670 | Msa0723170:CDS |
| CAAGTGAGGAACTGATTTCT+CGG | 0.471299 | 5_1:-20790451 | Msa0723170:CDS |
| CCGTGGATAAATCTCTTAGA+AGG | 0.481490 | 5_1:-20791357 | Msa0723170:intron |
| GGCACTGTCCTTGTTCTCAT+GGG | 0.495063 | 5_1:-20791941 | Msa0723170:CDS |
| GCAAGCACTTGAGAAGTTGA+TGG | 0.495981 | 5_1:+20792153 | None:intergenic |
| CCAGGATCAAGGGCCTCTAC+AGG | 0.506135 | 5_1:-20791902 | Msa0723170:CDS |
| TAAGCGTAAGGCGAATCCTT+GGG | 0.511314 | 5_1:+20791388 | None:intergenic |
| TCCAGTGAGTGTTCCAAGAA+GGG | 0.516170 | 5_1:+20792077 | None:intergenic |
| AATTACATACCCCAGGATCA+AGG | 0.516525 | 5_1:-20791913 | Msa0723170:CDS |
| TTCGCCTTACGCTTATAGCT+TGG | 0.517762 | 5_1:-20791380 | Msa0723170:CDS |
| TTTCTTCAGTTCTATTACCA+TGG | 0.524414 | 5_1:-20791815 | Msa0723170:CDS |
| AGTTTACTTGCATTGCAGAA+TGG | 0.524955 | 5_1:-20790411 | Msa0723170:CDS |
| GTCCAGTGAGTGTTCCAAGA+AGG | 0.526230 | 5_1:+20792076 | None:intergenic |
| TGCTTCACCCACTCCTCCCA+AGG | 0.526357 | 5_1:-20791404 | Msa0723170:CDS |
| CCTCAACATCGTTATGAAGT+TGG | 0.529388 | 5_1:-20792210 | Msa0723170:CDS |
| GGCTGAAGAGGATGAAAAGT+GGG | 0.530470 | 5_1:+20792040 | None:intergenic |
| AAGCCAATGACAATGGTGGC+TGG | 0.533271 | 5_1:+20792006 | None:intergenic |
| GAACAAGAACAGGGCTGAAG+AGG | 0.534164 | 5_1:+20792028 | None:intergenic |
| GGCGAATCCTTGGGAGGAGT+GGG | 0.537228 | 5_1:+20791397 | None:intergenic |
| GCAAGCAGTACACCGCCTAC+AGG | 0.537513 | 5_1:+20792114 | None:intergenic |
| TCTACAGGAGCAACTCGAGT+TGG | 0.549387 | 5_1:-20791887 | Msa0723170:CDS |
| CAACTTCATAACGATGTTGA+GGG | 0.550235 | 5_1:+20792211 | None:intergenic |
| AGGCGAATCCTTGGGAGGAG+TGG | 0.550564 | 5_1:+20791396 | None:intergenic |
| AACAATATTTGATTAAACGA+AGG | 0.558233 | 5_1:-20791522 | Msa0723170:CDS |
| CCTCCAGGAGGGGCATTGGA+CGG | 0.559072 | 5_1:-20790487 | Msa0723170:intron |
| TTACGCTTATAGCTTGGCCG+TGG | 0.563922 | 5_1:-20791374 | Msa0723170:CDS |
| AACTCGAGTTGCTCCTGTAG+AGG | 0.565489 | 5_1:+20791889 | None:intergenic |
| CAACATCGTTATGAAGTTGG+TGG | 0.571137 | 5_1:-20792207 | Msa0723170:CDS |
| TTTGAAGGCATAGTTAGGAG+AGG | 0.572561 | 5_1:+20790274 | None:intergenic |
| GTTTGTGAGGACTCGACGAG+TGG | 0.581088 | 5_1:+20791732 | None:intergenic |
| TGTAGAGGCCCTTGATCCTG+GGG | 0.582357 | 5_1:+20791904 | None:intergenic |
| TGGTTAGTTCGGAGTTTGTG+AGG | 0.583118 | 5_1:+20791719 | None:intergenic |
| GTTCTGACATTGTTGATGAG+AGG | 0.584108 | 5_1:+20792268 | None:intergenic |
| ATTACATACCCCAGGATCAA+GGG | 0.590997 | 5_1:-20791912 | Msa0723170:CDS |
| GGATTCGAGGTGTTGCAGGT+TGG | 0.596620 | 5_1:+20791699 | None:intergenic |
| CCAACTTCATAACGATGTTG+AGG | 0.597401 | 5_1:+20792210 | None:intergenic |
| GAGTGAAAGAATTGCTGCCA+TGG | 0.598782 | 5_1:+20791798 | None:intergenic |
| TGGAACACTCACTGGACTGG+GGG | 0.600169 | 5_1:-20792070 | Msa0723170:CDS |
| TACTCATAGTCATCGGAACA+TGG | 0.601957 | 5_1:+20790241 | None:intergenic |
| GGTGAAGAAATGCAGTTGGC+TGG | 0.602521 | 5_1:-20791472 | Msa0723170:CDS |
| GCTTATGGTGGAGTGGTGGT+CGG | 0.603978 | 5_1:-20791857 | Msa0723170:CDS |
| ATTCATGACCCATGAGAACA+AGG | 0.605807 | 5_1:+20791933 | None:intergenic |
| GGTCATGAATTACATACCCC+AGG | 0.611661 | 5_1:-20791920 | Msa0723170:CDS |
| GTAATTACCGGCCTTCCTGT+AGG | 0.612160 | 5_1:-20792129 | Msa0723170:CDS |
| TACACCGCCTACAGGAAGGC+CGG | 0.615441 | 5_1:+20792122 | None:intergenic |
| GGGCTGAAGAGGATGAAAAG+TGG | 0.618573 | 5_1:+20792039 | None:intergenic |
| AACAGCTTATGGTGGAGTGG+TGG | 0.622508 | 5_1:-20791861 | Msa0723170:CDS |
| GACAGCAAAGCCAATGACAA+TGG | 0.626525 | 5_1:+20791999 | None:intergenic |
| CCTTCTAAGAGATTTATCCA+CGG | 0.626878 | 5_1:+20791357 | None:intergenic |
| ACGGCCAAGCTATAAGCGTA+AGG | 0.627421 | 5_1:+20791376 | None:intergenic |
| TGGTGGAGTGGTGGTCGGAG+TGG | 0.638660 | 5_1:-20791852 | Msa0723170:CDS |
| GCAGTACACCGCCTACAGGA+AGG | 0.642229 | 5_1:+20792118 | None:intergenic |
| TTGGAACACTCACTGGACTG+GGG | 0.646592 | 5_1:-20792071 | Msa0723170:CDS |
| ACGATGTTGAGGGGTAACAC+TGG | 0.650096 | 5_1:+20792221 | None:intergenic |
| TGATGGTGAAGAAATGCAGT+TGG | 0.661675 | 5_1:-20791476 | Msa0723170:CDS |
| GCGTAAGGCGAATCCTTGGG+AGG | 0.670081 | 5_1:+20791391 | None:intergenic |
| AACTTCATAACGATGTTGAG+GGG | 0.671058 | 5_1:+20792212 | None:intergenic |
| AGCAAAGCCAATGACAATGG+TGG | 0.674104 | 5_1:+20792002 | None:intergenic |
| TGGTGGCTGGAACAAGAACA+GGG | 0.708517 | 5_1:+20792019 | None:intergenic |
| ATTACCGGCCTTCCTGTAGG+CGG | 0.711293 | 5_1:-20792126 | Msa0723170:CDS |
| CTGGTATCGTAACAGCGTGG+TGG | 0.712087 | 5_1:+20792240 | None:intergenic |
| ACACTGGTATCGTAACAGCG+TGG | 0.804350 | 5_1:+20792237 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATCAAATATTGTTTCATA+AGG | + | chr5_1:20791005-20791024 | None:intergenic | 15.0% |
| !! | TAATCAAATATTGTTTCATA+AGG | + | chr5_1:20791005-20791024 | None:intergenic | 15.0% |
| !! | AACATGTTGATATAACATTT+CGG | + | chr5_1:20790976-20790995 | None:intergenic | 20.0% |
| !! | AACAATATTTGATTAAACGA+AGG | - | chr5_1:20791010-20791029 | Msa0723170:intron | 20.0% |
| !!! | GAGATTTGTTTTGATAAAAA+TGG | - | chr5_1:20791090-20791109 | Msa0723170:intron | 20.0% |
| !! | TTTCGATTATTCAAAGATTA+AGG | - | chr5_1:20791356-20791375 | Msa0723170:intron | 20.0% |
| !! | AGCTTAATTATTTAAATTGC+AGG | + | chr5_1:20791868-20791887 | None:intergenic | 20.0% |
| !! | AACATGTTGATATAACATTT+CGG | + | chr5_1:20790976-20790995 | None:intergenic | 20.0% |
| !! | AACAATATTTGATTAAACGA+AGG | - | chr5_1:20791010-20791029 | Msa0723170:intron | 20.0% |
| !!! | GAGATTTGTTTTGATAAAAA+TGG | - | chr5_1:20791090-20791109 | Msa0723170:intron | 20.0% |
| !! | TTTCGATTATTCAAAGATTA+AGG | - | chr5_1:20791356-20791375 | Msa0723170:intron | 20.0% |
| !! | AGCTTAATTATTTAAATTGC+AGG | + | chr5_1:20791868-20791887 | None:intergenic | 20.0% |
| ! | ACATGTTGATATAACATTTC+GGG | + | chr5_1:20790975-20790994 | None:intergenic | 25.0% |
| ! | TATTTGATTAAACGAAGGAT+TGG | - | chr5_1:20791015-20791034 | Msa0723170:intron | 25.0% |
| ! | ATTTGATTAAACGAAGGATT+GGG | - | chr5_1:20791016-20791035 | Msa0723170:intron | 25.0% |
| !! | TTGGTCAAATTAGTTCTTTA+TGG | + | chr5_1:20791273-20791292 | None:intergenic | 25.0% |
| ! | ATAAAGAACTAATTTGACCA+AGG | - | chr5_1:20791272-20791291 | Msa0723170:intron | 25.0% |
| ! | TAAAGAACTAATTTGACCAA+GGG | - | chr5_1:20791273-20791292 | Msa0723170:intron | 25.0% |
| ! | TATTCTTGGTCTAATTTGAT+TGG | - | chr5_1:20791302-20791321 | Msa0723170:intron | 25.0% |
| !! | CTACAAACTGAAACATTTTT+GGG | - | chr5_1:20791420-20791439 | Msa0723170:CDS | 25.0% |
| ! | ATAATAGCAACAAGAAAATG+TGG | + | chr5_1:20791569-20791588 | None:intergenic | 25.0% |
| ! | TTTCACATATAGATACACTT+GGG | + | chr5_1:20791640-20791659 | None:intergenic | 25.0% |
| ! | AGATTATGTAGGATATTTCT+TGG | - | chr5_1:20791733-20791752 | Msa0723170:CDS | 25.0% |
| ! | GATTATGTAGGATATTTCTT+GGG | - | chr5_1:20791734-20791753 | Msa0723170:CDS | 25.0% |
| ! | ACATGTTGATATAACATTTC+GGG | + | chr5_1:20790975-20790994 | None:intergenic | 25.0% |
| ! | TATTTGATTAAACGAAGGAT+TGG | - | chr5_1:20791015-20791034 | Msa0723170:intron | 25.0% |
| ! | ATTTGATTAAACGAAGGATT+GGG | - | chr5_1:20791016-20791035 | Msa0723170:intron | 25.0% |
| !! | TTGGTCAAATTAGTTCTTTA+TGG | + | chr5_1:20791273-20791292 | None:intergenic | 25.0% |
| ! | ATAAAGAACTAATTTGACCA+AGG | - | chr5_1:20791272-20791291 | Msa0723170:intron | 25.0% |
| ! | TAAAGAACTAATTTGACCAA+GGG | - | chr5_1:20791273-20791292 | Msa0723170:intron | 25.0% |
| ! | TATTCTTGGTCTAATTTGAT+TGG | - | chr5_1:20791302-20791321 | Msa0723170:intron | 25.0% |
| !! | CTACAAACTGAAACATTTTT+GGG | - | chr5_1:20791420-20791439 | Msa0723170:CDS | 25.0% |
| ! | ATAATAGCAACAAGAAAATG+TGG | + | chr5_1:20791569-20791588 | None:intergenic | 25.0% |
| ! | TTTCACATATAGATACACTT+GGG | + | chr5_1:20791640-20791659 | None:intergenic | 25.0% |
| ! | AGATTATGTAGGATATTTCT+TGG | - | chr5_1:20791733-20791752 | Msa0723170:CDS | 25.0% |
| ! | GATTATGTAGGATATTTCTT+GGG | - | chr5_1:20791734-20791753 | Msa0723170:CDS | 25.0% |
| TTTCTTCAGTTCTATTACCA+TGG | - | chr5_1:20790717-20790736 | Msa0723170:intron | 30.0% | |
| ! | TGTTGAACCAATGATTTTGA+GGG | + | chr5_1:20790771-20790790 | None:intergenic | 30.0% |
| ! | ATGTTGAACCAATGATTTTG+AGG | + | chr5_1:20790772-20790791 | None:intergenic | 30.0% |
| AAATGCAAATTTCAGCAACT+TGG | + | chr5_1:20791220-20791239 | None:intergenic | 30.0% | |
| TGCTGAAATTTGCATTTCTT+TGG | - | chr5_1:20791223-20791242 | Msa0723170:intron | 30.0% | |
| GATTAAGGCTGTATTTAGAT+TGG | - | chr5_1:20791371-20791390 | Msa0723170:CDS | 30.0% | |
| CCAAAAATGTTTCAGTTTGT+AGG | + | chr5_1:20791422-20791441 | None:intergenic | 30.0% | |
| ! | CCTACAAACTGAAACATTTT+TGG | - | chr5_1:20791419-20791438 | Msa0723170:CDS | 30.0% |
| AATAAGCTGAAATCAGCTTA+TGG | + | chr5_1:20791485-20791504 | None:intergenic | 30.0% | |
| TGTGTTCAAAAACTATCCTT+GGG | + | chr5_1:20791518-20791537 | None:intergenic | 30.0% | |
| TTGTGTTCAAAAACTATCCT+TGG | + | chr5_1:20791519-20791538 | None:intergenic | 30.0% | |
| TTCACATATAGATACACTTG+GGG | + | chr5_1:20791639-20791658 | None:intergenic | 30.0% | |
| CTTTCACATATAGATACACT+TGG | + | chr5_1:20791641-20791660 | None:intergenic | 30.0% | |
| ! | GATATTTCTTGGGTGAATTT+TGG | - | chr5_1:20791744-20791763 | Msa0723170:CDS | 30.0% |
| !! | TCATCAGTAGCAATTTTAGT+TGG | - | chr5_1:20791837-20791856 | Msa0723170:CDS | 30.0% |
| !!! | CATCAGTAGCAATTTTAGTT+GGG | - | chr5_1:20791838-20791857 | Msa0723170:CDS | 30.0% |
| GGTTACTTGAATCTTAAACT+TGG | + | chr5_1:20791892-20791911 | None:intergenic | 30.0% | |
| ! | TTGCGACGAGAATATATTTT+CGG | + | chr5_1:20791913-20791932 | None:intergenic | 30.0% |
| TGTTTGAAAATGTGAGCTAT+GGG | + | chr5_1:20791940-20791959 | None:intergenic | 30.0% | |
| ! | GCTTTTGTATACATGTTAAG+TGG | + | chr5_1:20792158-20792177 | None:intergenic | 30.0% |
| TTTCTTCAGTTCTATTACCA+TGG | - | chr5_1:20790717-20790736 | Msa0723170:intron | 30.0% | |
| ! | TGTTGAACCAATGATTTTGA+GGG | + | chr5_1:20790771-20790790 | None:intergenic | 30.0% |
| ! | ATGTTGAACCAATGATTTTG+AGG | + | chr5_1:20790772-20790791 | None:intergenic | 30.0% |
| AAATGCAAATTTCAGCAACT+TGG | + | chr5_1:20791220-20791239 | None:intergenic | 30.0% | |
| TGCTGAAATTTGCATTTCTT+TGG | - | chr5_1:20791223-20791242 | Msa0723170:intron | 30.0% | |
| GATTAAGGCTGTATTTAGAT+TGG | - | chr5_1:20791371-20791390 | Msa0723170:CDS | 30.0% | |
| CCAAAAATGTTTCAGTTTGT+AGG | + | chr5_1:20791422-20791441 | None:intergenic | 30.0% | |
| ! | CCTACAAACTGAAACATTTT+TGG | - | chr5_1:20791419-20791438 | Msa0723170:CDS | 30.0% |
| AATAAGCTGAAATCAGCTTA+TGG | + | chr5_1:20791485-20791504 | None:intergenic | 30.0% | |
| TGTGTTCAAAAACTATCCTT+GGG | + | chr5_1:20791518-20791537 | None:intergenic | 30.0% | |
| TTGTGTTCAAAAACTATCCT+TGG | + | chr5_1:20791519-20791538 | None:intergenic | 30.0% | |
| TTCACATATAGATACACTTG+GGG | + | chr5_1:20791639-20791658 | None:intergenic | 30.0% | |
| CTTTCACATATAGATACACT+TGG | + | chr5_1:20791641-20791660 | None:intergenic | 30.0% | |
| ! | GATATTTCTTGGGTGAATTT+TGG | - | chr5_1:20791744-20791763 | Msa0723170:CDS | 30.0% |
| !! | TCATCAGTAGCAATTTTAGT+TGG | - | chr5_1:20791837-20791856 | Msa0723170:CDS | 30.0% |
| !!! | CATCAGTAGCAATTTTAGTT+GGG | - | chr5_1:20791838-20791857 | Msa0723170:CDS | 30.0% |
| GGTTACTTGAATCTTAAACT+TGG | + | chr5_1:20791892-20791911 | None:intergenic | 30.0% | |
| ! | TTGCGACGAGAATATATTTT+CGG | + | chr5_1:20791913-20791932 | None:intergenic | 30.0% |
| TGTTTGAAAATGTGAGCTAT+GGG | + | chr5_1:20791940-20791959 | None:intergenic | 30.0% | |
| ! | GCTTTTGTATACATGTTAAG+TGG | + | chr5_1:20792158-20792177 | None:intergenic | 30.0% |
| AACTTCATAACGATGTTGAG+GGG | + | chr5_1:20790323-20790342 | None:intergenic | 35.0% | |
| CAACTTCATAACGATGTTGA+GGG | + | chr5_1:20790324-20790343 | None:intergenic | 35.0% | |
| !!! | ATTTGGTGTTTTGGAAGTAG+AGG | + | chr5_1:20790861-20790880 | None:intergenic | 35.0% |
| TACTTCCAAAACACCAAATC+CGG | - | chr5_1:20790862-20790881 | Msa0723170:intron | 35.0% | |
| AACCAAAATTGAACCGGATT+TGG | + | chr5_1:20790878-20790897 | None:intergenic | 35.0% | |
| TACTCGAACCAAAATTGAAC+CGG | + | chr5_1:20790884-20790903 | None:intergenic | 35.0% | |
| ! | TTTTATAGAGGAGTTGCTGA+TGG | - | chr5_1:20791039-20791058 | Msa0723170:intron | 35.0% |
| ! | CCTTCTAAGAGATTTATCCA+CGG | + | chr5_1:20791178-20791197 | None:intergenic | 35.0% |
| ACCAAGGGAATACATATTCT+TGG | - | chr5_1:20791288-20791307 | Msa0723170:intron | 35.0% | |
| ACCAAGAATATGTATTCCCT+TGG | + | chr5_1:20791292-20791311 | None:intergenic | 35.0% | |
| ATTGGCTATATGCATATCCA+GGG | - | chr5_1:20791320-20791339 | Msa0723170:intron | 35.0% | |
| AAAGCTAGAACTACTAGATG+CGG | - | chr5_1:20791657-20791676 | Msa0723170:CDS | 35.0% | |
| ACTCTTCTGCTAGATTATGT+AGG | - | chr5_1:20791722-20791741 | Msa0723170:CDS | 35.0% | |
| GTGTTTGAAAATGTGAGCTA+TGG | + | chr5_1:20791941-20791960 | None:intergenic | 35.0% | |
| ! | AGCTCACATTTTCAAACACA+TGG | - | chr5_1:20791942-20791961 | Msa0723170:CDS | 35.0% |
| TCTGATATTTAATTCCCTCC+AGG | - | chr5_1:20792030-20792049 | Msa0723170:CDS | 35.0% | |
| ATATTTAATTCCCTCCAGGA+GGG | - | chr5_1:20792034-20792053 | Msa0723170:CDS | 35.0% | |
| AGTTTACTTGCATTGCAGAA+TGG | - | chr5_1:20792121-20792140 | Msa0723170:CDS | 35.0% | |
| !!! | CTGTTTTTGAAGGCATAGTT+AGG | + | chr5_1:20792266-20792285 | None:intergenic | 35.0% |
| AACTTCATAACGATGTTGAG+GGG | + | chr5_1:20790323-20790342 | None:intergenic | 35.0% | |
| CAACTTCATAACGATGTTGA+GGG | + | chr5_1:20790324-20790343 | None:intergenic | 35.0% | |
| !!! | ATTTGGTGTTTTGGAAGTAG+AGG | + | chr5_1:20790861-20790880 | None:intergenic | 35.0% |
| TACTTCCAAAACACCAAATC+CGG | - | chr5_1:20790862-20790881 | Msa0723170:intron | 35.0% | |
| AACCAAAATTGAACCGGATT+TGG | + | chr5_1:20790878-20790897 | None:intergenic | 35.0% | |
| TACTCGAACCAAAATTGAAC+CGG | + | chr5_1:20790884-20790903 | None:intergenic | 35.0% | |
| ! | TTTTATAGAGGAGTTGCTGA+TGG | - | chr5_1:20791039-20791058 | Msa0723170:intron | 35.0% |
| ! | CCTTCTAAGAGATTTATCCA+CGG | + | chr5_1:20791178-20791197 | None:intergenic | 35.0% |
| ACCAAGGGAATACATATTCT+TGG | - | chr5_1:20791288-20791307 | Msa0723170:intron | 35.0% | |
| ACCAAGAATATGTATTCCCT+TGG | + | chr5_1:20791292-20791311 | None:intergenic | 35.0% | |
| ATTGGCTATATGCATATCCA+GGG | - | chr5_1:20791320-20791339 | Msa0723170:intron | 35.0% | |
| AAAGCTAGAACTACTAGATG+CGG | - | chr5_1:20791657-20791676 | Msa0723170:CDS | 35.0% | |
| ACTCTTCTGCTAGATTATGT+AGG | - | chr5_1:20791722-20791741 | Msa0723170:CDS | 35.0% | |
| GTGTTTGAAAATGTGAGCTA+TGG | + | chr5_1:20791941-20791960 | None:intergenic | 35.0% | |
| ! | AGCTCACATTTTCAAACACA+TGG | - | chr5_1:20791942-20791961 | Msa0723170:CDS | 35.0% |
| TCTGATATTTAATTCCCTCC+AGG | - | chr5_1:20792030-20792049 | Msa0723170:CDS | 35.0% | |
| ATATTTAATTCCCTCCAGGA+GGG | - | chr5_1:20792034-20792053 | Msa0723170:CDS | 35.0% | |
| AGTTTACTTGCATTGCAGAA+TGG | - | chr5_1:20792121-20792140 | Msa0723170:CDS | 35.0% | |
| !!! | CTGTTTTTGAAGGCATAGTT+AGG | + | chr5_1:20792266-20792285 | None:intergenic | 35.0% |
| ! | GTTCTGACATTGTTGATGAG+AGG | + | chr5_1:20790267-20790286 | None:intergenic | 40.0% |
| CCAACTTCATAACGATGTTG+AGG | + | chr5_1:20790325-20790344 | None:intergenic | 40.0% | |
| CCTCAACATCGTTATGAAGT+TGG | - | chr5_1:20790322-20790341 | Msa0723170:CDS | 40.0% | |
| CAACATCGTTATGAAGTTGG+TGG | - | chr5_1:20790325-20790344 | Msa0723170:CDS | 40.0% | |
| ATTCATGACCCATGAGAACA+AGG | + | chr5_1:20790602-20790621 | None:intergenic | 40.0% | |
| AATTACATACCCCAGGATCA+AGG | - | chr5_1:20790619-20790638 | Msa0723170:intron | 40.0% | |
| ATTACATACCCCAGGATCAA+GGG | - | chr5_1:20790620-20790639 | Msa0723170:intron | 40.0% | |
| ! | CGAGTTGGAAAAACAGCTTA+TGG | - | chr5_1:20790660-20790679 | Msa0723170:intron | 40.0% |
| GTTGGAAAAACAGCTTATGG+TGG | - | chr5_1:20790663-20790682 | Msa0723170:intron | 40.0% | |
| ! | AAAAACAGCTTATGGTGGAG+TGG | - | chr5_1:20790668-20790687 | Msa0723170:intron | 40.0% |
| ATTCTTTCACTCTCCTCCTT+AGG | - | chr5_1:20790745-20790764 | Msa0723170:intron | 40.0% | |
| !!! | TTGAACCGGATTTGGTGTTT+TGG | + | chr5_1:20790870-20790889 | None:intergenic | 40.0% |
| ! | CACCAAATCCGGTTCAATTT+TGG | - | chr5_1:20790873-20790892 | Msa0723170:intron | 40.0% |
| CTGCGAGTAAACAGACTATT+GGG | + | chr5_1:20790927-20790946 | None:intergenic | 40.0% | |
| TCTGCGAGTAAACAGACTAT+TGG | + | chr5_1:20790928-20790947 | None:intergenic | 40.0% | |
| !! | CGAAGGATTGGGTTTTATAG+AGG | - | chr5_1:20791027-20791046 | Msa0723170:intron | 40.0% |
| ! | TGATGGTGAAGAAATGCAGT+TGG | - | chr5_1:20791056-20791075 | Msa0723170:intron | 40.0% |
| CCGTGGATAAATCTCTTAGA+AGG | - | chr5_1:20791175-20791194 | Msa0723170:intron | 40.0% | |
| ! | GATTGGCTATATGCATATCC+AGG | - | chr5_1:20791319-20791338 | Msa0723170:intron | 40.0% |
| TTGGCTATATGCATATCCAG+GGG | - | chr5_1:20791321-20791340 | Msa0723170:intron | 40.0% | |
| CTTATTCCAACAAACTCCCA+AGG | - | chr5_1:20791499-20791518 | Msa0723170:CDS | 40.0% | |
| AACTATCCTTGGGAGTTTGT+TGG | + | chr5_1:20791508-20791527 | None:intergenic | 40.0% | |
| AAGCTAGAACTACTAGATGC+GGG | - | chr5_1:20791658-20791677 | Msa0723170:CDS | 40.0% | |
| GATATTTAATTCCCTCCAGG+AGG | - | chr5_1:20792033-20792052 | Msa0723170:CDS | 40.0% | |
| TATTTAATTCCCTCCAGGAG+GGG | - | chr5_1:20792035-20792054 | Msa0723170:CDS | 40.0% | |
| ! | CATTGGACGGCATCTTTTAA+AGG | - | chr5_1:20792058-20792077 | Msa0723170:CDS | 40.0% |
| !! | GCATCTTTTAAAGGCAAGTG+AGG | - | chr5_1:20792067-20792086 | Msa0723170:CDS | 40.0% |
| ! | CAAGTGAGGAACTGATTTCT+CGG | - | chr5_1:20792081-20792100 | Msa0723170:CDS | 40.0% |
| ! | TTTGAAGGCATAGTTAGGAG+AGG | + | chr5_1:20792261-20792280 | None:intergenic | 40.0% |
| !!! | CATGGCACATCTGTTTTTGA+AGG | + | chr5_1:20792276-20792295 | None:intergenic | 40.0% |
| ! | GTTCTGACATTGTTGATGAG+AGG | + | chr5_1:20790267-20790286 | None:intergenic | 40.0% |
| CCAACTTCATAACGATGTTG+AGG | + | chr5_1:20790325-20790344 | None:intergenic | 40.0% | |
| CCTCAACATCGTTATGAAGT+TGG | - | chr5_1:20790322-20790341 | Msa0723170:CDS | 40.0% | |
| CAACATCGTTATGAAGTTGG+TGG | - | chr5_1:20790325-20790344 | Msa0723170:CDS | 40.0% | |
| ATTCATGACCCATGAGAACA+AGG | + | chr5_1:20790602-20790621 | None:intergenic | 40.0% | |
| AATTACATACCCCAGGATCA+AGG | - | chr5_1:20790619-20790638 | Msa0723170:intron | 40.0% | |
| ATTACATACCCCAGGATCAA+GGG | - | chr5_1:20790620-20790639 | Msa0723170:intron | 40.0% | |
| ! | CGAGTTGGAAAAACAGCTTA+TGG | - | chr5_1:20790660-20790679 | Msa0723170:intron | 40.0% |
| GTTGGAAAAACAGCTTATGG+TGG | - | chr5_1:20790663-20790682 | Msa0723170:intron | 40.0% | |
| ! | AAAAACAGCTTATGGTGGAG+TGG | - | chr5_1:20790668-20790687 | Msa0723170:intron | 40.0% |
| ATTCTTTCACTCTCCTCCTT+AGG | - | chr5_1:20790745-20790764 | Msa0723170:intron | 40.0% | |
| !!! | TTGAACCGGATTTGGTGTTT+TGG | + | chr5_1:20790870-20790889 | None:intergenic | 40.0% |
| ! | CACCAAATCCGGTTCAATTT+TGG | - | chr5_1:20790873-20790892 | Msa0723170:intron | 40.0% |
| CTGCGAGTAAACAGACTATT+GGG | + | chr5_1:20790927-20790946 | None:intergenic | 40.0% | |
| TCTGCGAGTAAACAGACTAT+TGG | + | chr5_1:20790928-20790947 | None:intergenic | 40.0% | |
| !! | CGAAGGATTGGGTTTTATAG+AGG | - | chr5_1:20791027-20791046 | Msa0723170:intron | 40.0% |
| ! | TGATGGTGAAGAAATGCAGT+TGG | - | chr5_1:20791056-20791075 | Msa0723170:intron | 40.0% |
| CCGTGGATAAATCTCTTAGA+AGG | - | chr5_1:20791175-20791194 | Msa0723170:intron | 40.0% | |
| ! | GATTGGCTATATGCATATCC+AGG | - | chr5_1:20791319-20791338 | Msa0723170:intron | 40.0% |
| TTGGCTATATGCATATCCAG+GGG | - | chr5_1:20791321-20791340 | Msa0723170:intron | 40.0% | |
| CTTATTCCAACAAACTCCCA+AGG | - | chr5_1:20791499-20791518 | Msa0723170:CDS | 40.0% | |
| AACTATCCTTGGGAGTTTGT+TGG | + | chr5_1:20791508-20791527 | None:intergenic | 40.0% | |
| AAGCTAGAACTACTAGATGC+GGG | - | chr5_1:20791658-20791677 | Msa0723170:CDS | 40.0% | |
| GATATTTAATTCCCTCCAGG+AGG | - | chr5_1:20792033-20792052 | Msa0723170:CDS | 40.0% | |
| TATTTAATTCCCTCCAGGAG+GGG | - | chr5_1:20792035-20792054 | Msa0723170:CDS | 40.0% | |
| ! | CATTGGACGGCATCTTTTAA+AGG | - | chr5_1:20792058-20792077 | Msa0723170:CDS | 40.0% |
| !! | GCATCTTTTAAAGGCAAGTG+AGG | - | chr5_1:20792067-20792086 | Msa0723170:CDS | 40.0% |
| ! | CAAGTGAGGAACTGATTTCT+CGG | - | chr5_1:20792081-20792100 | Msa0723170:CDS | 40.0% |
| ! | TTTGAAGGCATAGTTAGGAG+AGG | + | chr5_1:20792261-20792280 | None:intergenic | 40.0% |
| !!! | CATGGCACATCTGTTTTTGA+AGG | + | chr5_1:20792276-20792295 | None:intergenic | 40.0% |
| GCAAGCACTTGAGAAGTTGA+TGG | + | chr5_1:20790382-20790401 | None:intergenic | 45.0% | |
| CAAGTGCTTGCCGTAATTAC+CGG | - | chr5_1:20790391-20790410 | Msa0723170:CDS | 45.0% | |
| TACAGGAAGGCCGGTAATTA+CGG | + | chr5_1:20790404-20790423 | None:intergenic | 45.0% | |
| TCCAGTGAGTGTTCCAAGAA+GGG | + | chr5_1:20790458-20790477 | None:intergenic | 45.0% | |
| GGCTGAAGAGGATGAAAAGT+GGG | + | chr5_1:20790495-20790514 | None:intergenic | 45.0% | |
| AGCAAAGCCAATGACAATGG+TGG | + | chr5_1:20790533-20790552 | None:intergenic | 45.0% | |
| GACAGCAAAGCCAATGACAA+TGG | + | chr5_1:20790536-20790555 | None:intergenic | 45.0% | |
| !! | CTTTGCTGTCGCTGTCTTTT+TGG | - | chr5_1:20790546-20790565 | Msa0723170:intron | 45.0% |
| GGTCATGAATTACATACCCC+AGG | - | chr5_1:20790612-20790631 | Msa0723170:intron | 45.0% | |
| GAGTGAAAGAATTGCTGCCA+TGG | + | chr5_1:20790737-20790756 | None:intergenic | 45.0% | |
| !! | ATGATTTTGAGGGCCTAAGG+AGG | + | chr5_1:20790761-20790780 | None:intergenic | 45.0% |
| !! | CCAATGATTTTGAGGGCCTA+AGG | + | chr5_1:20790764-20790783 | None:intergenic | 45.0% |
| CCTTAGGCCCTCAAAATCAT+TGG | - | chr5_1:20790761-20790780 | Msa0723170:intron | 45.0% | |
| ! | TGGTTAGTTCGGAGTTTGTG+AGG | + | chr5_1:20790816-20790835 | None:intergenic | 45.0% |
| !! | GTGTTGCAGGTTGGTTAGTT+CGG | + | chr5_1:20790827-20790846 | None:intergenic | 45.0% |
| !!! | GGTGTTTTGGAAGTAGAGGA+AGG | + | chr5_1:20790857-20790876 | None:intergenic | 45.0% |
| TAAGCGTAAGGCGAATCCTT+GGG | + | chr5_1:20791147-20791166 | None:intergenic | 45.0% | |
| ATAAGCGTAAGGCGAATCCT+TGG | + | chr5_1:20791148-20791167 | None:intergenic | 45.0% | |
| TTCGCCTTACGCTTATAGCT+TGG | - | chr5_1:20791152-20791171 | Msa0723170:intron | 45.0% | |
| GCAAGCACTTGAGAAGTTGA+TGG | + | chr5_1:20790382-20790401 | None:intergenic | 45.0% | |
| CAAGTGCTTGCCGTAATTAC+CGG | - | chr5_1:20790391-20790410 | Msa0723170:CDS | 45.0% | |
| TACAGGAAGGCCGGTAATTA+CGG | + | chr5_1:20790404-20790423 | None:intergenic | 45.0% | |
| TCCAGTGAGTGTTCCAAGAA+GGG | + | chr5_1:20790458-20790477 | None:intergenic | 45.0% | |
| GGCTGAAGAGGATGAAAAGT+GGG | + | chr5_1:20790495-20790514 | None:intergenic | 45.0% | |
| AGCAAAGCCAATGACAATGG+TGG | + | chr5_1:20790533-20790552 | None:intergenic | 45.0% | |
| GACAGCAAAGCCAATGACAA+TGG | + | chr5_1:20790536-20790555 | None:intergenic | 45.0% | |
| !! | CTTTGCTGTCGCTGTCTTTT+TGG | - | chr5_1:20790546-20790565 | Msa0723170:intron | 45.0% |
| GGTCATGAATTACATACCCC+AGG | - | chr5_1:20790612-20790631 | Msa0723170:intron | 45.0% | |
| GAGTGAAAGAATTGCTGCCA+TGG | + | chr5_1:20790737-20790756 | None:intergenic | 45.0% | |
| !! | ATGATTTTGAGGGCCTAAGG+AGG | + | chr5_1:20790761-20790780 | None:intergenic | 45.0% |
| !! | CCAATGATTTTGAGGGCCTA+AGG | + | chr5_1:20790764-20790783 | None:intergenic | 45.0% |
| CCTTAGGCCCTCAAAATCAT+TGG | - | chr5_1:20790761-20790780 | Msa0723170:intron | 45.0% | |
| ! | TGGTTAGTTCGGAGTTTGTG+AGG | + | chr5_1:20790816-20790835 | None:intergenic | 45.0% |
| !! | GTGTTGCAGGTTGGTTAGTT+CGG | + | chr5_1:20790827-20790846 | None:intergenic | 45.0% |
| !!! | GGTGTTTTGGAAGTAGAGGA+AGG | + | chr5_1:20790857-20790876 | None:intergenic | 45.0% |
| TAAGCGTAAGGCGAATCCTT+GGG | + | chr5_1:20791147-20791166 | None:intergenic | 45.0% | |
| ATAAGCGTAAGGCGAATCCT+TGG | + | chr5_1:20791148-20791167 | None:intergenic | 45.0% | |
| TTCGCCTTACGCTTATAGCT+TGG | - | chr5_1:20791152-20791171 | Msa0723170:intron | 45.0% | |
| ACACTGGTATCGTAACAGCG+TGG | + | chr5_1:20790298-20790317 | None:intergenic | 50.0% | |
| ACGATGTTGAGGGGTAACAC+TGG | + | chr5_1:20790314-20790333 | None:intergenic | 50.0% | |
| GTAATTACCGGCCTTCCTGT+AGG | - | chr5_1:20790403-20790422 | Msa0723170:CDS | 50.0% | |
| TCCCTTCTTGGAACACTCAC+TGG | - | chr5_1:20790454-20790473 | Msa0723170:CDS | 50.0% | |
| GTCCAGTGAGTGTTCCAAGA+AGG | + | chr5_1:20790459-20790478 | None:intergenic | 50.0% | |
| TCTTGGAACACTCACTGGAC+TGG | - | chr5_1:20790459-20790478 | Msa0723170:CDS | 50.0% | |
| CTTGGAACACTCACTGGACT+GGG | - | chr5_1:20790460-20790479 | Msa0723170:CDS | 50.0% | |
| TTGGAACACTCACTGGACTG+GGG | - | chr5_1:20790461-20790480 | Msa0723170:CDS | 50.0% | |
| GGGCTGAAGAGGATGAAAAG+TGG | + | chr5_1:20790496-20790515 | None:intergenic | 50.0% | |
| GAACAAGAACAGGGCTGAAG+AGG | + | chr5_1:20790507-20790526 | None:intergenic | 50.0% | |
| TGGTGGCTGGAACAAGAACA+GGG | + | chr5_1:20790516-20790535 | None:intergenic | 50.0% | |
| ATGGTGGCTGGAACAAGAAC+AGG | + | chr5_1:20790517-20790536 | None:intergenic | 50.0% | |
| GTTCCAGCCACCATTGTCAT+TGG | - | chr5_1:20790523-20790542 | Msa0723170:intron | 50.0% | |
| AAGCCAATGACAATGGTGGC+TGG | + | chr5_1:20790529-20790548 | None:intergenic | 50.0% | |
| !! | TGTCGCTGTCTTTTTGGCGT+CGG | - | chr5_1:20790552-20790571 | Msa0723170:intron | 50.0% |
| !!! | TTTTTGGCGTCGGCAGCTTT+TGG | - | chr5_1:20790562-20790581 | Msa0723170:intron | 50.0% |
| !!! | TTTTGGCGTCGGCAGCTTTT+GGG | - | chr5_1:20790563-20790582 | Msa0723170:intron | 50.0% |
| TGGCACTGTCCTTGTTCTCA+TGG | - | chr5_1:20790590-20790609 | Msa0723170:intron | 50.0% | |
| GGCACTGTCCTTGTTCTCAT+GGG | - | chr5_1:20790591-20790610 | Msa0723170:intron | 50.0% | |
| ! | AACTCGAGTTGCTCCTGTAG+AGG | + | chr5_1:20790646-20790665 | None:intergenic | 50.0% |
| TCTACAGGAGCAACTCGAGT+TGG | - | chr5_1:20790645-20790664 | Msa0723170:intron | 50.0% | |
| ! | AACAGCTTATGGTGGAGTGG+TGG | - | chr5_1:20790671-20790690 | Msa0723170:intron | 50.0% |
| GGAAGTAGAGGAAGGATTCG+AGG | + | chr5_1:20790849-20790868 | None:intergenic | 50.0% | |
| GGTGAAGAAATGCAGTTGGC+TGG | - | chr5_1:20791060-20791079 | Msa0723170:intron | 50.0% | |
| ACGGCCAAGCTATAAGCGTA+AGG | + | chr5_1:20791159-20791178 | None:intergenic | 50.0% | |
| TTACGCTTATAGCTTGGCCG+TGG | - | chr5_1:20791158-20791177 | Msa0723170:intron | 50.0% | |
| GAAACTACACATTCAGCCCC+TGG | + | chr5_1:20791340-20791359 | None:intergenic | 50.0% | |
| TTCGTCTCTGCAACATCAGC+AGG | + | chr5_1:20792215-20792234 | None:intergenic | 50.0% | |
| ACACTGGTATCGTAACAGCG+TGG | + | chr5_1:20790298-20790317 | None:intergenic | 50.0% | |
| ACGATGTTGAGGGGTAACAC+TGG | + | chr5_1:20790314-20790333 | None:intergenic | 50.0% | |
| GTAATTACCGGCCTTCCTGT+AGG | - | chr5_1:20790403-20790422 | Msa0723170:CDS | 50.0% | |
| TCCCTTCTTGGAACACTCAC+TGG | - | chr5_1:20790454-20790473 | Msa0723170:CDS | 50.0% | |
| GTCCAGTGAGTGTTCCAAGA+AGG | + | chr5_1:20790459-20790478 | None:intergenic | 50.0% | |
| TCTTGGAACACTCACTGGAC+TGG | - | chr5_1:20790459-20790478 | Msa0723170:CDS | 50.0% | |
| CTTGGAACACTCACTGGACT+GGG | - | chr5_1:20790460-20790479 | Msa0723170:CDS | 50.0% | |
| TTGGAACACTCACTGGACTG+GGG | - | chr5_1:20790461-20790480 | Msa0723170:CDS | 50.0% | |
| GGGCTGAAGAGGATGAAAAG+TGG | + | chr5_1:20790496-20790515 | None:intergenic | 50.0% | |
| GAACAAGAACAGGGCTGAAG+AGG | + | chr5_1:20790507-20790526 | None:intergenic | 50.0% | |
| TGGTGGCTGGAACAAGAACA+GGG | + | chr5_1:20790516-20790535 | None:intergenic | 50.0% | |
| ATGGTGGCTGGAACAAGAAC+AGG | + | chr5_1:20790517-20790536 | None:intergenic | 50.0% | |
| GTTCCAGCCACCATTGTCAT+TGG | - | chr5_1:20790523-20790542 | Msa0723170:intron | 50.0% | |
| AAGCCAATGACAATGGTGGC+TGG | + | chr5_1:20790529-20790548 | None:intergenic | 50.0% | |
| !! | TGTCGCTGTCTTTTTGGCGT+CGG | - | chr5_1:20790552-20790571 | Msa0723170:intron | 50.0% |
| !!! | TTTTTGGCGTCGGCAGCTTT+TGG | - | chr5_1:20790562-20790581 | Msa0723170:intron | 50.0% |
| !!! | TTTTGGCGTCGGCAGCTTTT+GGG | - | chr5_1:20790563-20790582 | Msa0723170:intron | 50.0% |
| TGGCACTGTCCTTGTTCTCA+TGG | - | chr5_1:20790590-20790609 | Msa0723170:intron | 50.0% | |
| GGCACTGTCCTTGTTCTCAT+GGG | - | chr5_1:20790591-20790610 | Msa0723170:intron | 50.0% | |
| ! | AACTCGAGTTGCTCCTGTAG+AGG | + | chr5_1:20790646-20790665 | None:intergenic | 50.0% |
| TCTACAGGAGCAACTCGAGT+TGG | - | chr5_1:20790645-20790664 | Msa0723170:intron | 50.0% | |
| ! | AACAGCTTATGGTGGAGTGG+TGG | - | chr5_1:20790671-20790690 | Msa0723170:intron | 50.0% |
| GGAAGTAGAGGAAGGATTCG+AGG | + | chr5_1:20790849-20790868 | None:intergenic | 50.0% | |
| GGTGAAGAAATGCAGTTGGC+TGG | - | chr5_1:20791060-20791079 | Msa0723170:intron | 50.0% | |
| ACGGCCAAGCTATAAGCGTA+AGG | + | chr5_1:20791159-20791178 | None:intergenic | 50.0% | |
| TTACGCTTATAGCTTGGCCG+TGG | - | chr5_1:20791158-20791177 | Msa0723170:intron | 50.0% | |
| GAAACTACACATTCAGCCCC+TGG | + | chr5_1:20791340-20791359 | None:intergenic | 50.0% | |
| TTCGTCTCTGCAACATCAGC+AGG | + | chr5_1:20792215-20792234 | None:intergenic | 50.0% | |
| CTGGTATCGTAACAGCGTGG+TGG | + | chr5_1:20790295-20790314 | None:intergenic | 55.0% | |
| ATTACCGGCCTTCCTGTAGG+CGG | - | chr5_1:20790406-20790425 | Msa0723170:CDS | 55.0% | |
| GGTGTACTGCTTGCACTTGC+TGG | - | chr5_1:20790427-20790446 | Msa0723170:CDS | 55.0% | |
| CTTGCTGGACTCTCCCTTCT+TGG | - | chr5_1:20790442-20790461 | Msa0723170:CDS | 55.0% | |
| ! | TGGAACACTCACTGGACTGG+GGG | - | chr5_1:20790462-20790481 | Msa0723170:CDS | 55.0% |
| TGTAGAGGCCCTTGATCCTG+GGG | + | chr5_1:20790631-20790650 | None:intergenic | 55.0% | |
| CTGTAGAGGCCCTTGATCCT+GGG | + | chr5_1:20790632-20790651 | None:intergenic | 55.0% | |
| ! | GCTTATGGTGGAGTGGTGGT+CGG | - | chr5_1:20790675-20790694 | Msa0723170:intron | 55.0% |
| ! | GAGGACTCGACGAGTGGTTT+TGG | + | chr5_1:20790797-20790816 | None:intergenic | 55.0% |
| GTTTGTGAGGACTCGACGAG+TGG | + | chr5_1:20790803-20790822 | None:intergenic | 55.0% | |
| !! | GGATTCGAGGTGTTGCAGGT+TGG | + | chr5_1:20790836-20790855 | None:intergenic | 55.0% |
| !! | GGAAGGATTCGAGGTGTTGC+AGG | + | chr5_1:20790840-20790859 | None:intergenic | 55.0% |
| CTGGTATCGTAACAGCGTGG+TGG | + | chr5_1:20790295-20790314 | None:intergenic | 55.0% | |
| ATTACCGGCCTTCCTGTAGG+CGG | - | chr5_1:20790406-20790425 | Msa0723170:CDS | 55.0% | |
| GGTGTACTGCTTGCACTTGC+TGG | - | chr5_1:20790427-20790446 | Msa0723170:CDS | 55.0% | |
| CTTGCTGGACTCTCCCTTCT+TGG | - | chr5_1:20790442-20790461 | Msa0723170:CDS | 55.0% | |
| ! | TGGAACACTCACTGGACTGG+GGG | - | chr5_1:20790462-20790481 | Msa0723170:CDS | 55.0% |
| TGTAGAGGCCCTTGATCCTG+GGG | + | chr5_1:20790631-20790650 | None:intergenic | 55.0% | |
| CTGTAGAGGCCCTTGATCCT+GGG | + | chr5_1:20790632-20790651 | None:intergenic | 55.0% | |
| ! | GCTTATGGTGGAGTGGTGGT+CGG | - | chr5_1:20790675-20790694 | Msa0723170:intron | 55.0% |
| ! | GAGGACTCGACGAGTGGTTT+TGG | + | chr5_1:20790797-20790816 | None:intergenic | 55.0% |
| GTTTGTGAGGACTCGACGAG+TGG | + | chr5_1:20790803-20790822 | None:intergenic | 55.0% | |
| !! | GGATTCGAGGTGTTGCAGGT+TGG | + | chr5_1:20790836-20790855 | None:intergenic | 55.0% |
| !! | GGAAGGATTCGAGGTGTTGC+AGG | + | chr5_1:20790840-20790859 | None:intergenic | 55.0% |
| TACACCGCCTACAGGAAGGC+CGG | + | chr5_1:20790413-20790432 | None:intergenic | 60.0% | |
| GCAGTACACCGCCTACAGGA+AGG | + | chr5_1:20790417-20790436 | None:intergenic | 60.0% | |
| GCAAGCAGTACACCGCCTAC+AGG | + | chr5_1:20790421-20790440 | None:intergenic | 60.0% | |
| ! | GTCGGCAGCTTTTGGGCTGA+TGG | - | chr5_1:20790570-20790589 | Msa0723170:intron | 60.0% |
| CCTGTAGAGGCCCTTGATCC+TGG | + | chr5_1:20790633-20790652 | None:intergenic | 60.0% | |
| CCAGGATCAAGGGCCTCTAC+AGG | - | chr5_1:20790630-20790649 | Msa0723170:intron | 60.0% | |
| TGCTTCACCCACTCCTCCCA+AGG | - | chr5_1:20791128-20791147 | Msa0723170:intron | 60.0% | |
| GGCGAATCCTTGGGAGGAGT+GGG | + | chr5_1:20791138-20791157 | None:intergenic | 60.0% | |
| AGGCGAATCCTTGGGAGGAG+TGG | + | chr5_1:20791139-20791158 | None:intergenic | 60.0% | |
| GCGTAAGGCGAATCCTTGGG+AGG | + | chr5_1:20791144-20791163 | None:intergenic | 60.0% | |
| ! | ATTCCCTCCAGGAGGGGCAT+TGG | - | chr5_1:20792041-20792060 | Msa0723170:CDS | 60.0% |
| TACACCGCCTACAGGAAGGC+CGG | + | chr5_1:20790413-20790432 | None:intergenic | 60.0% | |
| GCAGTACACCGCCTACAGGA+AGG | + | chr5_1:20790417-20790436 | None:intergenic | 60.0% | |
| GCAAGCAGTACACCGCCTAC+AGG | + | chr5_1:20790421-20790440 | None:intergenic | 60.0% | |
| ! | GTCGGCAGCTTTTGGGCTGA+TGG | - | chr5_1:20790570-20790589 | Msa0723170:intron | 60.0% |
| CCTGTAGAGGCCCTTGATCC+TGG | + | chr5_1:20790633-20790652 | None:intergenic | 60.0% | |
| CCAGGATCAAGGGCCTCTAC+AGG | - | chr5_1:20790630-20790649 | Msa0723170:intron | 60.0% | |
| TGCTTCACCCACTCCTCCCA+AGG | - | chr5_1:20791128-20791147 | Msa0723170:intron | 60.0% | |
| GGCGAATCCTTGGGAGGAGT+GGG | + | chr5_1:20791138-20791157 | None:intergenic | 60.0% | |
| AGGCGAATCCTTGGGAGGAG+TGG | + | chr5_1:20791139-20791158 | None:intergenic | 60.0% | |
| GCGTAAGGCGAATCCTTGGG+AGG | + | chr5_1:20791144-20791163 | None:intergenic | 60.0% | |
| ! | ATTCCCTCCAGGAGGGGCAT+TGG | - | chr5_1:20792041-20792060 | Msa0723170:CDS | 60.0% |
| TGGTGGAGTGGTGGTCGGAG+TGG | - | chr5_1:20790680-20790699 | Msa0723170:intron | 65.0% | |
| CGTCCAATGCCCCTCCTGGA+GGG | + | chr5_1:20792047-20792066 | None:intergenic | 65.0% | |
| !! | CCTCCAGGAGGGGCATTGGA+CGG | - | chr5_1:20792045-20792064 | Msa0723170:CDS | 65.0% |
| ATGCCGTCCAATGCCCCTCC+TGG | + | chr5_1:20792051-20792070 | None:intergenic | 65.0% | |
| TGGTGGAGTGGTGGTCGGAG+TGG | - | chr5_1:20790680-20790699 | Msa0723170:intron | 65.0% | |
| CGTCCAATGCCCCTCCTGGA+GGG | + | chr5_1:20792047-20792066 | None:intergenic | 65.0% | |
| !! | CCTCCAGGAGGGGCATTGGA+CGG | - | chr5_1:20792045-20792064 | Msa0723170:CDS | 65.0% |
| ATGCCGTCCAATGCCCCTCC+TGG | + | chr5_1:20792051-20792070 | None:intergenic | 65.0% | |
| CCGTCCAATGCCCCTCCTGG+AGG | + | chr5_1:20792048-20792067 | None:intergenic | 70.0% | |
| CCGTCCAATGCCCCTCCTGG+AGG | + | chr5_1:20792048-20792067 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 20790250 | 20792304 | 20790250 | ID=Msa0723170;Name=Msa0723170 |
| chr5_1 | mRNA | 20790250 | 20792304 | 20790250 | ID=Msa0723170-mRNA-1;Parent=Msa0723170;Name=Msa0723170-mRNA-1;_AED=0.40;_eAED=0.45;_QI=0|0|0|1|1|1|2|0|399 |
| chr5_1 | exon | 20791358 | 20792304 | 20791358 | ID=Msa0723170-mRNA-1:exon:7974;Parent=Msa0723170-mRNA-1 |
| chr5_1 | exon | 20790250 | 20790502 | 20790250 | ID=Msa0723170-mRNA-1:exon:7973;Parent=Msa0723170-mRNA-1 |
| chr5_1 | CDS | 20791358 | 20792304 | 20791358 | ID=Msa0723170-mRNA-1:cds;Parent=Msa0723170-mRNA-1 |
| chr5_1 | CDS | 20790250 | 20790502 | 20790250 | ID=Msa0723170-mRNA-1:cds;Parent=Msa0723170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
