AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724200

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724200 MtrunA17_Chr5g0415291 85.892 241 32 1 1 241 1 239 6.87e-155 429
Msa0724200 MtrunA17_Chr8g0363921 61.132 265 65 8 5 240 22 277 6.89e-94 276
Msa0724200 MtrunA17_Chr7g0234761 66.387 119 36 1 77 195 284 398 4.05e-45 157
Msa0724200 MtrunA17_Chr8g0339091 58.571 140 40 1 74 195 233 372 7.81e-45 156
Msa0724200 MtrunA17_Chr3g0144641 61.364 132 43 2 71 196 150 279 3.95e-42 147
Msa0724200 MtrunA17_Chr4g0035101 61.600 125 46 2 79 202 109 232 9.78e-42 145
Msa0724200 MtrunA17_Chr5g0421111 58.462 130 52 2 93 220 343 472 5.19e-40 144
Msa0724200 MtrunA17_Chr8g0365941 66.972 109 33 2 78 185 270 376 8.28e-40 142
Msa0724200 MtrunA17_Chr3g0131771 82.278 79 14 0 107 185 140 218 3.28e-39 138
Msa0724200 MtrunA17_Chr8g0385911 85.333 75 11 0 111 185 142 216 5.10e-39 137
Msa0724200 MtrunA17_Chr1g0152131 72.043 93 25 1 94 185 239 331 1.80e-38 138
Msa0724200 MtrunA17_Chr1g0174161 78.667 75 16 0 111 185 157 231 4.78e-36 130
Msa0724200 MtrunA17_Chr7g0258161 75.000 80 20 0 108 187 167 246 4.63e-35 127
Msa0724200 MtrunA17_Chr6g0484271 50.365 137 57 2 64 200 116 241 8.54e-35 125
Msa0724200 MtrunA17_Chr4g0074161 66.667 66 21 1 114 179 206 270 2.09e-20 89.0
Msa0724200 MtrunA17_Chr1g0190731 56.962 79 33 1 101 179 180 257 2.67e-20 88.2
Msa0724200 MtrunA17_Chr1g0182791 47.500 80 40 2 116 195 319 396 4.21e-15 73.9
Msa0724200 MtrunA17_Chr1g0184841 38.158 152 86 3 58 207 67 212 4.44e-15 72.8
Msa0724200 MtrunA17_Chr4g0032951 53.846 65 30 0 114 178 355 419 3.06e-14 71.2
Msa0724200 MtrunA17_Chr1g0193321 35.659 129 66 4 55 179 411 526 3.29e-14 71.6
Msa0724200 MtrunA17_Chr4g0014771 47.692 65 34 0 114 178 118 182 4.17e-13 65.9
Msa0724200 MtrunA17_Chr2g0329041 49.231 65 33 0 112 176 330 394 6.24e-13 67.4
Msa0724200 MtrunA17_Chr1g0174271 49.254 67 34 0 114 180 298 364 2.38e-12 65.9
Msa0724200 MtrunA17_Chr5g0393721 32.298 161 94 5 26 178 134 287 2.70e-12 65.5
Msa0724200 MtrunA17_Chr3g0134741 44.565 92 42 3 90 178 207 292 4.74e-12 64.7
Msa0724200 MtrunA17_Chr1g0153241 35.106 94 55 2 87 180 63 150 5.61e-12 63.9
Msa0724200 MtrunA17_Chr7g0258181 46.269 67 36 0 114 180 243 309 7.94e-12 63.9
Msa0724200 MtrunA17_Chr1g0152651 47.692 65 33 1 114 178 274 337 1.95e-11 63.2
Msa0724200 MtrunA17_Chr8g0351881 47.692 65 34 0 114 178 316 380 2.09e-11 63.2
Msa0724200 MtrunA17_Chr7g0262691 38.710 93 51 3 108 195 246 337 5.04e-11 62.0
Msa0724200 MtrunA17_Chr7g0270871 45.455 55 29 1 125 179 213 266 7.91e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724200 AT1G59640.1 53.237 278 79 8 1 241 1 264 3.62e-82 246
Msa0724200 AT1G59640.2 47.925 265 84 9 1 225 1 251 5.64e-58 187
Msa0724200 AT5G62610.2 56.425 179 64 4 75 240 103 280 1.95e-56 181
Msa0724200 AT5G62610.1 56.425 179 64 4 75 240 103 280 1.95e-56 181
Msa0724200 AT1G68920.1 57.432 148 60 3 75 220 264 410 6.58e-45 157
Msa0724200 AT1G68920.4 57.432 148 60 3 75 220 264 410 6.58e-45 157
Msa0724200 AT1G68920.2 57.432 148 60 3 75 220 264 410 6.58e-45 157
Msa0724200 AT1G68920.3 57.432 148 60 3 75 220 263 409 6.97e-45 157
Msa0724200 AT3G23690.1 56.774 155 53 3 47 187 110 264 7.80e-44 151
Msa0724200 AT3G07340.2 53.143 175 57 5 13 187 182 331 1.67e-43 152
Msa0724200 AT3G07340.1 51.913 183 63 6 13 195 182 339 2.55e-43 152
Msa0724200 AT5G48560.2 63.200 125 42 1 61 185 252 372 1.53e-42 150
Msa0724200 AT5G48560.1 63.200 125 42 1 61 185 252 372 3.25e-42 150
Msa0724200 AT5G50915.3 49.383 162 78 2 27 185 47 207 4.33e-42 144
Msa0724200 AT5G50915.4 49.383 162 78 2 27 185 47 207 4.33e-42 144
Msa0724200 AT5G50915.1 49.689 161 77 2 27 184 47 206 1.41e-41 143
Msa0724200 AT5G50915.2 49.689 161 77 2 27 184 47 206 1.41e-41 143
Msa0724200 AT4G34530.1 47.159 176 85 2 13 188 79 246 2.03e-41 144
Msa0724200 AT2G18300.2 45.810 179 72 4 37 210 121 279 2.91e-40 141
Msa0724200 AT2G18300.3 45.810 179 72 4 37 210 121 279 7.59e-40 141
Msa0724200 AT4G36540.1 53.247 154 64 4 59 207 82 232 1.65e-39 139
Msa0724200 AT1G26260.3 52.258 155 58 3 47 185 89 243 2.97e-39 139
Msa0724200 AT1G26260.5 52.258 155 58 3 47 185 118 272 4.36e-39 139
Msa0724200 AT1G10120.2 73.563 87 23 0 99 185 191 277 4.80e-39 139
Msa0724200 AT1G10120.1 73.563 87 23 0 99 185 191 277 4.80e-39 139
Msa0724200 AT2G18300.1 45.251 179 71 4 37 210 121 277 5.04e-39 138
Msa0724200 AT1G26260.4 52.258 155 58 3 47 185 140 294 9.55e-39 139
Msa0724200 AT1G26260.1 52.258 155 58 3 47 185 140 294 9.55e-39 139
Msa0724200 AT1G26260.6 52.258 155 58 3 47 185 140 294 9.55e-39 139
Msa0724200 AT1G26260.2 52.258 155 58 3 47 185 140 294 9.55e-39 139
Msa0724200 AT4G36540.2 57.576 132 50 3 59 185 82 212 1.15e-38 136
Msa0724200 AT2G42300.4 73.750 80 21 0 108 187 179 258 9.04e-36 128
Msa0724200 AT3G57800.2 73.810 84 22 0 104 187 194 277 1.89e-35 130
Msa0724200 AT2G42300.1 73.750 80 21 0 108 187 179 258 6.56e-35 127
Msa0724200 AT1G73830.1 54.167 120 55 0 67 186 100 219 1.28e-34 125
Msa0724200 AT1G73830.2 54.167 120 55 0 67 186 100 219 1.30e-34 125
Msa0724200 AT1G18400.2 73.333 75 20 0 112 186 143 217 1.53e-33 121
Msa0724200 AT1G18400.1 73.333 75 20 0 112 186 143 217 2.27e-33 121
Msa0724200 AT1G25330.1 69.231 78 24 0 109 186 99 176 2.31e-33 120
Msa0724200 AT3G57800.1 47.328 131 22 1 104 187 194 324 1.11e-26 107
Msa0724200 AT2G24260.2 60.274 73 28 1 107 179 28 99 2.22e-21 89.7
Msa0724200 AT4G30980.1 66.667 66 21 1 114 179 130 194 1.46e-20 88.6
Msa0724200 AT5G58010.1 66.667 66 21 1 114 179 99 163 1.68e-20 88.6
Msa0724200 AT2G24260.1 60.274 73 28 1 107 179 131 202 2.09e-20 89.0
Msa0724200 AT4G30980.2 66.667 66 21 1 114 179 178 242 2.30e-20 89.0
Msa0724200 AT2G42300.5 80.435 46 9 0 108 153 179 224 5.15e-19 83.2
Msa0724200 AT2G42300.3 80.435 46 9 0 108 153 179 224 5.15e-19 83.2
Msa0724200 AT2G42300.2 80.435 46 9 0 108 153 179 224 5.97e-19 83.2
Msa0724200 AT2G20180.7 37.864 103 55 2 77 179 178 271 1.04e-14 73.2
Msa0724200 AT2G20180.1 37.864 103 55 2 77 179 178 271 1.04e-14 73.2
Msa0724200 AT2G20180.5 37.864 103 55 2 77 179 178 271 1.04e-14 73.2
Msa0724200 AT2G20180.4 37.864 103 55 2 77 179 249 342 1.50e-14 72.8
Msa0724200 AT2G20180.6 37.864 103 55 2 77 179 249 342 1.50e-14 72.8
Msa0724200 AT2G20180.2 37.864 103 55 2 77 179 249 342 1.50e-14 72.8
Msa0724200 AT2G20180.3 37.864 103 55 2 77 179 249 342 1.50e-14 72.8
Msa0724200 AT1G09530.3 48.438 64 32 1 116 179 339 401 4.57e-14 71.6
Msa0724200 AT1G09530.2 48.438 64 32 1 116 179 339 401 4.57e-14 71.6
Msa0724200 AT1G09530.5 48.438 64 32 1 116 179 339 401 4.57e-14 71.6
Msa0724200 AT1G09530.1 48.438 64 32 1 116 179 339 401 4.57e-14 71.6
Msa0724200 AT1G09530.4 48.438 64 32 1 116 179 339 401 4.57e-14 71.6
Msa0724200 AT1G09530.6 48.438 64 32 1 116 179 339 401 4.57e-14 71.6
Msa0724200 AT4G02590.3 42.623 122 59 4 58 179 37 147 1.15e-13 68.9
Msa0724200 AT4G28815.2 45.946 74 38 2 117 189 71 143 1.54e-13 68.2
Msa0724200 AT4G02590.2 42.623 122 59 4 58 179 100 210 3.52e-13 68.2
Msa0724200 AT4G02590.1 42.623 122 59 4 58 179 100 210 3.52e-13 68.2
Msa0724200 AT4G28800.1 50.000 62 30 1 117 178 252 312 4.46e-13 68.6
Msa0724200 AT4G28815.1 45.946 74 38 2 117 189 147 219 4.79e-13 67.8
Msa0724200 AT2G20180.8 38.000 100 53 2 77 176 249 339 8.28e-13 67.4
Msa0724200 AT1G51140.1 51.562 64 31 0 114 177 304 367 1.09e-12 67.0
Msa0724200 AT4G36930.1 34.821 112 69 3 120 229 197 306 1.14e-12 67.0
Msa0724200 AT4G28800.2 36.220 127 58 5 117 222 264 388 1.17e-12 67.4
Msa0724200 AT1G03040.2 59.091 66 26 1 114 179 139 203 1.77e-12 65.9
Msa0724200 AT1G03040.1 59.091 66 26 1 114 179 144 208 2.18e-12 65.9
Msa0724200 AT1G03040.3 48.837 86 43 1 114 199 144 228 2.62e-12 65.9
Msa0724200 AT1G35460.1 40.000 75 45 0 114 188 181 255 5.92e-12 64.3
Msa0724200 AT4G28790.1 28.481 158 103 3 31 179 179 335 6.97e-12 64.7
Msa0724200 AT2G42280.1 46.154 65 35 0 114 178 279 343 1.16e-11 63.9
Msa0724200 AT4G09180.1 43.284 67 38 0 112 178 182 248 1.37e-11 63.2
Msa0724200 AT2G46970.1 42.105 76 38 2 109 179 213 287 1.50e-11 63.9
Msa0724200 AT2G46970.2 37.895 95 53 2 90 179 163 256 1.51e-11 63.9
Msa0724200 AT2G46970.3 37.895 95 53 2 90 179 172 265 1.61e-11 63.9
Msa0724200 AT2G42280.3 48.485 66 32 1 114 177 279 344 1.94e-11 63.5
Msa0724200 AT4G00050.2 47.692 65 33 1 114 178 105 168 2.72e-11 62.8
Msa0724200 AT1G27740.1 35.780 109 64 2 75 178 123 230 2.93e-11 62.0
Msa0724200 AT2G43140.2 46.377 69 37 0 114 182 231 299 3.06e-11 62.4
Msa0724200 AT2G43140.1 46.377 69 37 0 114 182 134 202 4.47e-11 60.8
Msa0724200 AT4G00050.1 47.692 65 33 1 114 178 207 270 5.06e-11 62.4
Msa0724200 AT4G00050.3 47.692 65 33 1 114 178 207 270 6.03e-11 62.0

Find 95 sgRNAs with CRISPR-Local

Find 207 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CACCTTGAGTATATGATTTA+TGG 0.135504 5_1:+22491983 None:intergenic
TCCTATTTGCATTTACTATC+TGG 0.242293 5_1:+22492030 None:intergenic
ATCAGTAGCTTGACCCCTTC+TGG 0.262138 5_1:+22493897 None:intergenic
GGGGCTAAACTGCGGTCTTC+TGG 0.273092 5_1:+22495038 None:intergenic
TCAGATTTCGAATCTTTCTA+TGG 0.279173 5_1:-22495094 Msa0724200:exon
ACATGGATGTAGTCTTTCTT+AGG 0.315186 5_1:+22493925 None:intergenic
GTGGGAGTGGTGACCGAAAA+AGG 0.325213 5_1:-22494026 Msa0724200:CDS
TGAAAGGATGAAAACTCTTC+AGG 0.347449 5_1:-22493054 Msa0724200:CDS
TCTATACCACAGGGTCGTTT+TGG 0.349836 5_1:-22491928 Msa0724200:three_prime_UTR
GACCCTGTGGTATAGAAAAC+TGG 0.360558 5_1:+22491935 None:intergenic
TGCTTGTTCTGAATACATAA+TGG 0.367797 5_1:-22491778 Msa0724200:three_prime_UTR
ACTGGAATCAAGTGTCCATT+TGG 0.368001 5_1:+22491953 None:intergenic
ACCTTGAGTATATGATTTAT+GGG 0.371471 5_1:+22491984 None:intergenic
ATACTCTTTCTGCAAGACTA+TGG 0.386857 5_1:+22493872 None:intergenic
CGTATCATCTCCCGGAGATC+TGG 0.389824 5_1:-22495065 Msa0724200:CDS
GCCACGGCCACCACCATTGC+CGG 0.392661 5_1:+22494906 None:intergenic
ACCAGATAGTAAATGCAAAT+AGG 0.393969 5_1:-22492031 Msa0724200:three_prime_UTR
AAAGGAGAAGAAAACAGTTC+AGG 0.396640 5_1:-22493982 Msa0724200:CDS
CATTGGAAAATCTCCGAAGC+TGG 0.412609 5_1:+22495017 None:intergenic
CTTCTGGACTGCCAGATCTC+CGG 0.419175 5_1:+22495054 None:intergenic
ACACTGATGGACAGGCTAGA+AGG 0.430987 5_1:-22493088 Msa0724200:intron
ACCGGCAATGGTGGTGGCCG+TGG 0.436369 5_1:-22494907 Msa0724200:CDS
TGCATTTGTTATTAGTGTGC+TGG 0.440251 5_1:-22491889 Msa0724200:three_prime_UTR
TTCTGGACTGCCAGATCTCC+GGG 0.448211 5_1:+22495055 None:intergenic
ACTCTTCAGGATTTAGTCCC+TGG 0.449489 5_1:-22493041 Msa0724200:CDS
ATCATTGTTGTTGTAAAAGA+AGG 0.459016 5_1:-22491802 Msa0724200:three_prime_UTR
CTACTTGGTGGTGAAGTGAT+TGG 0.461423 5_1:+22492740 None:intergenic
GTGGGCAATTACCACGTTGT+TGG 0.465601 5_1:+22494879 None:intergenic
ATGTAGTCTTTCTTAGGATG+TGG 0.471510 5_1:+22493931 None:intergenic
ACAGTGAATGAATAATGATA+TGG 0.477523 5_1:+22495214 None:intergenic
TCAAGGTGTTGAAGTCCAAA+TGG 0.481629 5_1:-22491968 Msa0724200:three_prime_UTR
CCGCAGTTTAGCCCCAGCTT+CGG 0.487641 5_1:-22495030 Msa0724200:CDS
AACCATACCTTGTTGCAACC+AGG 0.489186 5_1:+22493023 None:intergenic
CAAGTTGTAGAGAGAGTGAA+TGG 0.498361 5_1:+22495190 None:intergenic
TTACATATGCAGCTGGGAGG+TGG 0.500933 5_1:-22492089 Msa0724200:CDS
TCAGTTAAATGCGTTTCTAC+CGG 0.501738 5_1:-22494925 Msa0724200:CDS
AGATAATTCACACCTCTACT+TGG 0.503743 5_1:+22492725 None:intergenic
AGAGTGGTTACATATGCAGC+TGG 0.504135 5_1:-22492096 Msa0724200:CDS
ATTGGAAAATCTCCGAAGCT+GGG 0.505786 5_1:+22495018 None:intergenic
GTTTCTACCGGCAATGGTGG+TGG 0.505900 5_1:-22494913 Msa0724200:CDS
CACTGATGGACAGGCTAGAA+GGG 0.507526 5_1:-22493087 Msa0724200:intron
GACCCCTTCTGGCTCGAACA+TGG 0.511902 5_1:+22493908 None:intergenic
GGGTTTGTGCAGAATGATGA+TGG 0.512242 5_1:-22494048 Msa0724200:intron
TCAGGTTATTGGAAAAGCAT+TGG 0.514448 5_1:-22492788 Msa0724200:intron
AACAGCGAGGGAGGGAAGAA+TGG 0.520840 5_1:+22495142 None:intergenic
AATAATGATATGGTTGGAGT+TGG 0.521622 5_1:+22495224 None:intergenic
GCATTTGTTATTAGTGTGCT+GGG 0.525751 5_1:-22491888 Msa0724200:three_prime_UTR
AAGACATCAGGGAACAGTAA+AGG 0.528363 5_1:-22494000 Msa0724200:CDS
CAGAATGATGATGGTGGGAG+TGG 0.528513 5_1:-22494039 Msa0724200:CDS
CTTGTAGCTTGTGAAGTGAA+TGG 0.532061 5_1:+22492143 None:intergenic
CATCCATGTTCGAGCCAGAA+GGG 0.533625 5_1:-22493911 Msa0724200:CDS
AAGACCAACTCCTGGTATTG+AGG 0.535318 5_1:-22492590 Msa0724200:CDS
AAATGCGTTTCTACCGGCAA+TGG 0.547123 5_1:-22494919 Msa0724200:CDS
AGAGGAAACGCCTCAATACC+AGG 0.549144 5_1:+22492580 None:intergenic
TGCGTTTCTACCGGCAATGG+TGG 0.555816 5_1:-22494916 Msa0724200:CDS
TATAATTGATTATCTCATCA+AGG 0.561459 5_1:+22492764 None:intergenic
ACTATAGAGTTTAACAGCGA+GGG 0.566410 5_1:+22495130 None:intergenic
GGATCCAGCGTATCATCTCC+CGG 0.570528 5_1:-22495073 Msa0724200:CDS
ACCATACCTTGTTGCAACCA+GGG 0.571972 5_1:+22493024 None:intergenic
GAAGGGAAAAGATTAGTGAA+AGG 0.577890 5_1:-22493070 Msa0724200:CDS
TCAGTACTGAGATCTTCCAT+TGG 0.581952 5_1:+22495000 None:intergenic
TAATTCACACCTCTACTTGG+TGG 0.582744 5_1:+22492728 None:intergenic
AACGCCTCAATACCAGGAGT+TGG 0.584696 5_1:+22492586 None:intergenic
ACATCCATGTTCGAGCCAGA+AGG 0.584719 5_1:-22493912 Msa0724200:CDS
TCCCATAAATCATATACTCA+AGG 0.586272 5_1:-22491985 Msa0724200:three_prime_UTR
ATATGGTTGGAGTTGGACAC+TGG 0.590001 5_1:+22495231 None:intergenic
CCACGTTGTTGGAATTGCCA+CGG 0.590128 5_1:+22494890 None:intergenic
GTAAATTCAAGACCAACTCC+TGG 0.595020 5_1:-22492598 Msa0724200:CDS
TTGTGCAGAATGATGATGGT+GGG 0.595694 5_1:-22494044 Msa0724200:intron
ATCCATGTTCGAGCCAGAAG+GGG 0.611344 5_1:-22493910 Msa0724200:CDS
ATAGAGTTTAACAGCGAGGG+AGG 0.612384 5_1:+22495133 None:intergenic
AGCTGCATATGTAACCACTC+TGG 0.617342 5_1:+22492098 None:intergenic
GAAAAGTAGAATAGAGACGA+AGG 0.620221 5_1:-22494953 Msa0724200:CDS
TTGGAAAATCTCCGAAGCTG+GGG 0.627605 5_1:+22495019 None:intergenic
TTTAGTCCCTGGTTGCAACA+AGG 0.628236 5_1:-22493030 Msa0724200:intron
ATCTCCGGGAGATGATACGC+TGG 0.632287 5_1:+22495069 None:intergenic
TACTATAGAGTTTAACAGCG+AGG 0.633809 5_1:+22495129 None:intergenic
ATCACTTCACCACCAAGTAG+AGG 0.638957 5_1:-22492737 Msa0724200:intron
TGAATGAATAATGATATGGT+TGG 0.644933 5_1:+22495218 None:intergenic
TTGTGAAGTGAATGGTATGG+TGG 0.648457 5_1:+22492151 None:intergenic
TAGAGTTTAACAGCGAGGGA+GGG 0.649003 5_1:+22495134 None:intergenic
GAGTGGTTACATATGCAGCT+GGG 0.656275 5_1:-22492095 Msa0724200:CDS
TTTGTGCAGAATGATGATGG+TGG 0.665463 5_1:-22494045 Msa0724200:intron
ACCACTCTGGTGATGCACCT+CGG 0.668855 5_1:+22492111 None:intergenic
TGAGTTGTATGGGAGTCCCA+AGG 0.674979 5_1:-22495333 None:intergenic
GCTACAAGAGAGTACAGCCG+AGG 0.682744 5_1:-22492128 Msa0724200:CDS
TACAAACCAAAACGACCCTG+TGG 0.687298 5_1:+22491922 None:intergenic
AGCTTGTGAAGTGAATGGTA+TGG 0.687656 5_1:+22492148 None:intergenic
AAACAGTTCAGGAAAGCATG+CGG 0.691753 5_1:-22493971 Msa0724200:CDS
CCGAAGCTGGGGCTAAACTG+CGG 0.692738 5_1:+22495030 None:intergenic
GCCGAGGTGCATCACCAGAG+TGG 0.699435 5_1:-22492112 Msa0724200:CDS
TGGTTACATATGCAGCTGGG+AGG 0.711832 5_1:-22492092 Msa0724200:CDS
CACTGGACAGTGTAGCGTGG+TGG 0.717387 5_1:+22495248 None:intergenic
CCGTGGCAATTCCAACAACG+TGG 0.733634 5_1:-22494890 Msa0724200:intron
GGACACTGGACAGTGTAGCG+TGG 0.741944 5_1:+22495245 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAACTTTTTAATATTTAATA+TGG + chr5_1:22492599-22492618 None:intergenic 10.0%
!!! GCTTTATTTTATTTTTATTA+TGG - chr5_1:22492679-22492698 Msa0724200:intron 10.0%
!!! TTACTATTTTTTTTTTTTGT+TGG - chr5_1:22492914-22492933 Msa0724200:intron 10.0%
!! AATAAAACCTATATAAATTT+AGG + chr5_1:22493492-22493511 None:intergenic 10.0%
!!! ACATTAAATTTTTAGAAAAA+AGG + chr5_1:22494336-22494355 None:intergenic 10.0%
!!! TTTATTTGAGTTTTTTTTAC+CGG - chr5_1:22492349-22492368 Msa0724200:intron 15.0%
!! TACAATTTAGTATTACAATA+TGG - chr5_1:22492868-22492887 Msa0724200:intron 15.0%
!! AACAATTCCTAAATTTATAT+AGG - chr5_1:22493482-22493501 Msa0724200:intron 15.0%
!! AAACATAATAAATCTATTTG+AGG - chr5_1:22494669-22494688 Msa0724200:intron 15.0%
!! TTATGTTATCTTAATTACGA+AGG - chr5_1:22492200-22492219 Msa0724200:intron 20.0%
!! ACGAAGGAAAAAATATATAT+TGG - chr5_1:22492216-22492235 Msa0724200:intron 20.0%
!! CGAAGGAAAAAATATATATT+GGG - chr5_1:22492217-22492236 Msa0724200:intron 20.0%
!!! ATTTAGTTCTACTAGAAAAT+TGG - chr5_1:22492245-22492264 Msa0724200:intron 20.0%
!!! AATAAAGCTATTTTCATGTA+AGG + chr5_1:22492667-22492686 None:intergenic 20.0%
!!! TCACAAAGTGTATTTTTATA+TGG - chr5_1:22493192-22493211 Msa0724200:intron 20.0%
!!! TATTACTTTTTTTGACAACT+TGG - chr5_1:22493289-22493308 Msa0724200:intron 20.0%
!!! AGTAAATTGTGTTTCTATTT+GGG + chr5_1:22493429-22493448 None:intergenic 20.0%
!!! TAGTAAATTGTGTTTCTATT+TGG + chr5_1:22493430-22493449 None:intergenic 20.0%
!!! TTAATGGTTGTTTTAGTTTT+AGG - chr5_1:22493686-22493705 Msa0724200:intron 20.0%
!! AGTTATACACATAAAAAATG+CGG + chr5_1:22494061-22494080 None:intergenic 20.0%
!!! GATTTGTTTTTAATGTATTC+AGG - chr5_1:22494217-22494236 Msa0724200:intron 20.0%
!!! TTTTAATGTATTCAGGTTAT+TGG - chr5_1:22494224-22494243 Msa0724200:intron 20.0%
!! TATAATTGATTATCTCATCA+AGG + chr5_1:22494262-22494281 None:intergenic 20.0%
!!! TAAATACTTACAGTTTTAAG+AGG + chr5_1:22494464-22494483 None:intergenic 20.0%
!! TTATTCTATATAATGTCCTT+TGG - chr5_1:22494544-22494563 Msa0724200:intron 20.0%
!!! TTTAGTCCTCAAATTTTTAA+CGG + chr5_1:22494699-22494718 None:intergenic 20.0%
! TGAATGAATAATGATATGGT+TGG + chr5_1:22491808-22491827 None:intergenic 25.0%
! ACAGTGAATGAATAATGATA+TGG + chr5_1:22491812-22491831 None:intergenic 25.0%
! AAAAGATAGCATAATTGAGT+GGG + chr5_1:22492165-22492184 None:intergenic 25.0%
! AAAAAGATAGCATAATTGAG+TGG + chr5_1:22492166-22492185 None:intergenic 25.0%
! TGTATTAACCAAGTAGTTAA+AGG - chr5_1:22492293-22492312 Msa0724200:intron 25.0%
!!! GAGTTTTTAAAACAACTGTT+TGG - chr5_1:22492399-22492418 Msa0724200:intron 25.0%
!!! GTTGTTTTTGTAAGCTATAT+TGG - chr5_1:22492505-22492524 Msa0724200:intron 25.0%
!! ATATTTAATATGGGCTTGTT+TGG + chr5_1:22492589-22492608 None:intergenic 25.0%
! TAGTATTACAATATGGAGAA+TGG - chr5_1:22492875-22492894 Msa0724200:intron 25.0%
! AAAAAATAGTAATCCGCAAT+AGG + chr5_1:22492906-22492925 None:intergenic 25.0%
!! TTCTTATATTTAAGACCAGA+GGG + chr5_1:22493372-22493391 None:intergenic 25.0%
!!! TTTAGGAATTGTTTTTGAGA+AGG + chr5_1:22493475-22493494 None:intergenic 25.0%
! AAATGAAACTGTTACGTAAA+TGG - chr5_1:22493841-22493860 Msa0724200:intron 25.0%
! AATGAAACTGTTACGTAAAT+GGG - chr5_1:22493842-22493861 Msa0724200:intron 25.0%
!! TATTTTGCAATCAGTGTTAT+TGG - chr5_1:22493886-22493905 Msa0724200:CDS 25.0%
! TAAAAACAAATCAAGCCATA+AGG + chr5_1:22494209-22494228 None:intergenic 25.0%
!! ATGCTATATATTCTAGAAGT+TGG - chr5_1:22494510-22494529 Msa0724200:intron 25.0%
!!! TAAACTCTTTAATTTGGACT+AGG + chr5_1:22494756-22494775 None:intergenic 25.0%
! GCACTTTAAACTCTTTAATT+TGG + chr5_1:22494762-22494781 None:intergenic 25.0%
! GAAGATAGATTTAGCTAAAA+AGG + chr5_1:22494798-22494817 None:intergenic 25.0%
! ACCTTGAGTATATGATTTAT+GGG + chr5_1:22495042-22495061 None:intergenic 25.0%
!! ATCATTGTTGTTGTAAAAGA+AGG - chr5_1:22495221-22495240 Msa0724200:five_prime_UTR 25.0%
AATAATGATATGGTTGGAGT+TGG + chr5_1:22491802-22491821 None:intergenic 30.0%
TCAGATTTCGAATCTTTCTA+TGG - chr5_1:22491929-22491948 Msa0724200:three_prime_UTR 30.0%
TAACCAAGTAGTTAAAGGTT+AGG - chr5_1:22492298-22492317 Msa0724200:intron 30.0%
ATTCTCATAAGTCTTTAAGC+CGG + chr5_1:22492371-22492390 None:intergenic 30.0%
!!! GCAACTTGTTTTTGTATATG+TGG - chr5_1:22492479-22492498 Msa0724200:intron 30.0%
! AATTGTCAGAAGTTGTTTCA+TGG - chr5_1:22492540-22492559 Msa0724200:intron 30.0%
GATTAAGATGTTTATCCAAG+TGG - chr5_1:22492740-22492759 Msa0724200:CDS 30.0%
TACTCAATAAAACTTCCACT+TGG + chr5_1:22492758-22492777 None:intergenic 30.0%
! TGGTAATTTAGAGTTTGACT+AGG + chr5_1:22492803-22492822 None:intergenic 30.0%
AGTCAAACTCTAAATTACCA+AGG - chr5_1:22492803-22492822 Msa0724200:intron 30.0%
AAACTCTAAATTACCAAGGT+CGG - chr5_1:22492807-22492826 Msa0724200:intron 30.0%
! TGGAATTCAAGCATTGTTAT+TGG - chr5_1:22492934-22492953 Msa0724200:intron 30.0%
CTTTGTGAGAATTAGAAAGT+TGG + chr5_1:22493180-22493199 None:intergenic 30.0%
TTAGATAATGTTGATCCTGA+AGG - chr5_1:22493232-22493251 Msa0724200:intron 30.0%
! CTTCTTATATTTAAGACCAG+AGG + chr5_1:22493373-22493392 None:intergenic 30.0%
CAAGTTTCATGTTCTTAACT+GGG - chr5_1:22493731-22493750 Msa0724200:intron 30.0%
!! GGGAGGTAATATTGATTTAT+TGG - chr5_1:22493862-22493881 Msa0724200:intron 30.0%
TGAATATTGATGAACACTGA+TGG - chr5_1:22493922-22493941 Msa0724200:CDS 30.0%
TGAGCTGAAAATATTCCTTA+TGG - chr5_1:22494191-22494210 Msa0724200:intron 30.0%
GCATTCAACGTAAAAGAATT+AGG + chr5_1:22494494-22494513 None:intergenic 30.0%
AAAAAAGCTTCTAACCAAAC+TGG + chr5_1:22494608-22494627 None:intergenic 30.0%
! GGTTTTCCGTTAAAAATTTG+AGG - chr5_1:22494690-22494709 Msa0724200:intron 30.0%
TTGGTCACTCAATGATTATT+GGG + chr5_1:22494726-22494745 None:intergenic 30.0%
TTTGGTCACTCAATGATTAT+TGG + chr5_1:22494727-22494746 None:intergenic 30.0%
ACCAGATAGTAAATGCAAAT+AGG - chr5_1:22494992-22495011 Msa0724200:CDS 30.0%
TCCTATTTGCATTTACTATC+TGG + chr5_1:22494996-22495015 None:intergenic 30.0%
TCCCATAAATCATATACTCA+AGG - chr5_1:22495038-22495057 Msa0724200:CDS 30.0%
CACCTTGAGTATATGATTTA+TGG + chr5_1:22495043-22495062 None:intergenic 30.0%
! TTACATAAGATCTAGCTTAG+TGG - chr5_1:22495169-22495188 Msa0724200:five_prime_UTR 30.0%
! TGCTTGTTCTGAATACATAA+TGG - chr5_1:22495245-22495264 Msa0724200:five_prime_UTR 30.0%
! TTTTCAGACACATCTACCTT+GGG + chr5_1:22491709-22491728 None:intergenic 35.0%
ACTATAGAGTTTAACAGCGA+GGG + chr5_1:22491896-22491915 None:intergenic 35.0%
TACTATAGAGTTTAACAGCG+AGG + chr5_1:22491897-22491916 None:intergenic 35.0%
!! TCGTCTCTATTCTACTTTTC+CGG + chr5_1:22492070-22492089 None:intergenic 35.0%
GAAAAGTAGAATAGAGACGA+AGG - chr5_1:22492070-22492089 Msa0724200:CDS 35.0%
TCAGTTAAATGCGTTTCTAC+CGG - chr5_1:22492098-22492117 Msa0724200:CDS 35.0%
GAACCTAACCTTTAACTACT+TGG + chr5_1:22492304-22492323 None:intergenic 35.0%
AAGGTTAGGTTCAACTCTTA+AGG - chr5_1:22492312-22492331 Msa0724200:intron 35.0%
TTTCAAAAGTAAACCGACCT+TGG + chr5_1:22492823-22492842 None:intergenic 35.0%
! AAGCATTGTTATTGGAGTAG+AGG - chr5_1:22492942-22492961 Msa0724200:intron 35.0%
! CTGATGTCTTACTCCTTTTT+CGG + chr5_1:22493013-22493032 None:intergenic 35.0%
GAAAAAGGAGTAAGACATCA+GGG - chr5_1:22493012-22493031 Msa0724200:intron 35.0%
AAAGGAGAAGAAAACAGTTC+AGG - chr5_1:22493041-22493060 Msa0724200:CDS 35.0%
ATGTAGTCTTTCTTAGGATG+TGG + chr5_1:22493095-22493114 None:intergenic 35.0%
ACATGGATGTAGTCTTTCTT+AGG + chr5_1:22493101-22493120 None:intergenic 35.0%
ATACTCTTTCTGCAAGACTA+TGG + chr5_1:22493154-22493173 None:intergenic 35.0%
TTTGACAACTTGGAATCAGT+AGG - chr5_1:22493299-22493318 Msa0724200:intron 35.0%
CGGTCTCGATTATAAACAAA+AGG + chr5_1:22493652-22493671 None:intergenic 35.0%
TGTTTATAATCGAGACCGAA+TGG - chr5_1:22493654-22493673 Msa0724200:intron 35.0%
CATTAAGCAAAACCACCATT+CGG + chr5_1:22493672-22493691 None:intergenic 35.0%
GCAAGTTTCATGTTCTTAAC+TGG - chr5_1:22493730-22493749 Msa0724200:intron 35.0%
CTGGGATAATTGTAATACTG+AGG - chr5_1:22493749-22493768 Msa0724200:intron 35.0%
GAAGGGAAAAGATTAGTGAA+AGG - chr5_1:22493953-22493972 Msa0724200:CDS 35.0%
TGAAAGGATGAAAACTCTTC+AGG - chr5_1:22493969-22493988 Msa0724200:CDS 35.0%
! TCAGGTTATTGGAAAAGCAT+TGG - chr5_1:22494235-22494254 Msa0724200:intron 35.0%
AGATAATTCACACCTCTACT+TGG + chr5_1:22494301-22494320 None:intergenic 35.0%
AGTTATACTCATCTCACCAA+AGG + chr5_1:22494563-22494582 None:intergenic 35.0%
GGTATCCTTGCGATAAAAAA+GGG + chr5_1:22494587-22494606 None:intergenic 35.0%
TGGTATCCTTGCGATAAAAA+AGG + chr5_1:22494588-22494607 None:intergenic 35.0%
!! ATTTGGACTAGGTCTGATTT+TGG + chr5_1:22494745-22494764 None:intergenic 35.0%
! CATATGTTTGCTGATCAAAC+TGG + chr5_1:22494846-22494865 None:intergenic 35.0%
! ATTCCAGTTTTCTATACCAC+AGG - chr5_1:22495085-22495104 Msa0724200:exon 35.0%
! TTCCAGTTTTCTATACCACA+GGG - chr5_1:22495086-22495105 Msa0724200:exon 35.0%
!! TGCATTTGTTATTAGTGTGC+TGG - chr5_1:22495134-22495153 Msa0724200:five_prime_UTR 35.0%
!! GCATTTGTTATTAGTGTGCT+GGG - chr5_1:22495135-22495154 Msa0724200:five_prime_UTR 35.0%
! GTTTTCAGACACATCTACCT+TGG + chr5_1:22491710-22491729 None:intergenic 40.0%
CAAGTTGTAGAGAGAGTGAA+TGG + chr5_1:22491836-22491855 None:intergenic 40.0%
ATTGGAAAATCTCCGAAGCT+GGG + chr5_1:22492008-22492027 None:intergenic 40.0%
! TCAGTACTGAGATCTTCCAT+TGG + chr5_1:22492026-22492045 None:intergenic 40.0%
GAACAAAAACCACTGAACCA+TGG - chr5_1:22492044-22492063 Msa0724200:three_prime_UTR 40.0%
GTTCAACTCTTAAGGTGTGT+TGG - chr5_1:22492320-22492339 Msa0724200:intron 40.0%
TGGAGTAGAGGTAGTGAATT+TGG - chr5_1:22492954-22492973 Msa0724200:intron 40.0%
GGAGTAGAGGTAGTGAATTT+GGG - chr5_1:22492955-22492974 Msa0724200:intron 40.0%
!! TTTGTGCAGAATGATGATGG+TGG - chr5_1:22492978-22492997 Msa0724200:intron 40.0%
!! TTGTGCAGAATGATGATGGT+GGG - chr5_1:22492979-22492998 Msa0724200:intron 40.0%
CGAAAAAGGAGTAAGACATC+AGG - chr5_1:22493011-22493030 Msa0724200:intron 40.0%
AAGACATCAGGGAACAGTAA+AGG - chr5_1:22493023-22493042 Msa0724200:intron 40.0%
! AAACAGTTCAGGAAAGCATG+CGG - chr5_1:22493052-22493071 Msa0724200:CDS 40.0%
TCAAGCAAGCAATATCCTTC+AGG + chr5_1:22493250-22493269 None:intergenic 40.0%
ACCAAATTCTATACTCCCTC+TGG - chr5_1:22493354-22493373 Msa0724200:intron 40.0%
! ACCAGAGGGAGTATAGAATT+TGG + chr5_1:22493358-22493377 None:intergenic 40.0%
TTATAATCGAGACCGAATGG+TGG - chr5_1:22493657-22493676 Msa0724200:intron 40.0%
!! CGAATGGTGGTTTTGCTTAA+TGG - chr5_1:22493670-22493689 Msa0724200:intron 40.0%
GAAACTGTTACGTAAATGGG+AGG - chr5_1:22493845-22493864 Msa0724200:intron 40.0%
! ATTGATGAACACTGATGGAC+AGG - chr5_1:22493927-22493946 Msa0724200:CDS 40.0%
TAATTCACACCTCTACTTGG+TGG + chr5_1:22494298-22494317 None:intergenic 40.0%
GTAAATTCAAGACCAACTCC+TGG - chr5_1:22494425-22494444 Msa0724200:intron 40.0%
!!! AACTGCCCTTTTTTATCGCA+AGG - chr5_1:22494579-22494598 Msa0724200:intron 40.0%
TTATCGCAAGGATACCAGTT+TGG - chr5_1:22494591-22494610 Msa0724200:intron 40.0%
GATTAGTAGATAGTAGCAGC+AGG - chr5_1:22494642-22494661 Msa0724200:intron 40.0%
TTGTGAAGTGAATGGTATGG+TGG + chr5_1:22494875-22494894 None:intergenic 40.0%
AGCTTGTGAAGTGAATGGTA+TGG + chr5_1:22494878-22494897 None:intergenic 40.0%
! CTTGTAGCTTGTGAAGTGAA+TGG + chr5_1:22494883-22494902 None:intergenic 40.0%
!! TCAAGGTGTTGAAGTCCAAA+TGG - chr5_1:22495055-22495074 Msa0724200:CDS 40.0%
ACTGGAATCAAGTGTCCATT+TGG + chr5_1:22495073-22495092 None:intergenic 40.0%
ATATGGTTGGAGTTGGACAC+TGG + chr5_1:22491795-22491814 None:intergenic 45.0%
TAGAGTTTAACAGCGAGGGA+GGG + chr5_1:22491892-22491911 None:intergenic 45.0%
ATAGAGTTTAACAGCGAGGG+AGG + chr5_1:22491893-22491912 None:intergenic 45.0%
TTGGAAAATCTCCGAAGCTG+GGG + chr5_1:22492007-22492026 None:intergenic 45.0%
CATTGGAAAATCTCCGAAGC+TGG + chr5_1:22492009-22492028 None:intergenic 45.0%
! CAGCTTCGGAGATTTTCCAA+TGG - chr5_1:22492007-22492026 Msa0724200:three_prime_UTR 45.0%
AAAAACCACTGAACCATGGC+CGG - chr5_1:22492048-22492067 Msa0724200:three_prime_UTR 45.0%
!! CTATTCTACTTTTCCGGCCA+TGG + chr5_1:22492064-22492083 None:intergenic 45.0%
AAATGCGTTTCTACCGGCAA+TGG - chr5_1:22492104-22492123 Msa0724200:CDS 45.0%
GAGAATGGATCTGCCTATTG+CGG - chr5_1:22492890-22492909 Msa0724200:intron 45.0%
GGGTTTGTGCAGAATGATGA+TGG - chr5_1:22492975-22492994 Msa0724200:intron 45.0%
ACTCTTCAGGATTTAGTCCC+TGG - chr5_1:22493982-22494001 Msa0724200:CDS 45.0%
TTTAGTCCCTGGTTGCAACA+AGG - chr5_1:22493993-22494012 Msa0724200:CDS 45.0%
ACCATACCTTGTTGCAACCA+GGG + chr5_1:22494002-22494021 None:intergenic 45.0%
AACCATACCTTGTTGCAACC+AGG + chr5_1:22494003-22494022 None:intergenic 45.0%
!! CTACTTGGTGGTGAAGTGAT+TGG + chr5_1:22494286-22494305 None:intergenic 45.0%
ATCACTTCACCACCAAGTAG+AGG - chr5_1:22494286-22494305 Msa0724200:intron 45.0%
AAGACCAACTCCTGGTATTG+AGG - chr5_1:22494433-22494452 Msa0724200:intron 45.0%
AGTAGATAGTAGCAGCAGGT+AGG - chr5_1:22494646-22494665 Msa0724200:intron 45.0%
AGCTGCATATGTAACCACTC+TGG + chr5_1:22494928-22494947 None:intergenic 45.0%
AGAGTGGTTACATATGCAGC+TGG - chr5_1:22494927-22494946 Msa0724200:CDS 45.0%
GAGTGGTTACATATGCAGCT+GGG - chr5_1:22494928-22494947 Msa0724200:CDS 45.0%
GACCCTGTGGTATAGAAAAC+TGG + chr5_1:22495091-22495110 None:intergenic 45.0%
! TCTATACCACAGGGTCGTTT+TGG - chr5_1:22495095-22495114 Msa0724200:exon 45.0%
TACAAACCAAAACGACCCTG+TGG + chr5_1:22495104-22495123 None:intergenic 45.0%
!!! AACTTTTTAATATTTAATAT+GGG + chr5_1:22492598-22492617 None:intergenic 5.0%
CCACGTTGTTGGAATTGCCA+CGG + chr5_1:22492136-22492155 None:intergenic 50.0%
GTGGGCAATTACCACGTTGT+TGG + chr5_1:22492147-22492166 None:intergenic 50.0%
!! CAGAATGATGATGGTGGGAG+TGG - chr5_1:22492984-22493003 Msa0724200:intron 50.0%
ACATCCATGTTCGAGCCAGA+AGG - chr5_1:22493111-22493130 Msa0724200:intron 50.0%
CATCCATGTTCGAGCCAGAA+GGG - chr5_1:22493112-22493131 Msa0724200:intron 50.0%
ATCCATGTTCGAGCCAGAAG+GGG - chr5_1:22493113-22493132 Msa0724200:intron 50.0%
ATCAGTAGCTTGACCCCTTC+TGG + chr5_1:22493129-22493148 None:intergenic 50.0%
! ACACTGATGGACAGGCTAGA+AGG - chr5_1:22493935-22493954 Msa0724200:CDS 50.0%
! CACTGATGGACAGGCTAGAA+GGG - chr5_1:22493936-22493955 Msa0724200:CDS 50.0%
TCCCTGGTTGCAACAAGGTA+TGG - chr5_1:22493998-22494017 Msa0724200:CDS 50.0%
AACGCCTCAATACCAGGAGT+TGG + chr5_1:22494440-22494459 None:intergenic 50.0%
AGAGGAAACGCCTCAATACC+AGG + chr5_1:22494446-22494465 None:intergenic 50.0%
TGGTTACATATGCAGCTGGG+AGG - chr5_1:22494931-22494950 Msa0724200:CDS 50.0%
TTACATATGCAGCTGGGAGG+TGG - chr5_1:22494934-22494953 Msa0724200:CDS 50.0%
AACAGCGAGGGAGGGAAGAA+TGG + chr5_1:22491884-22491903 None:intergenic 55.0%
GGATCCAGCGTATCATCTCC+CGG - chr5_1:22491950-22491969 Msa0724200:three_prime_UTR 55.0%
ATCTCCGGGAGATGATACGC+TGG + chr5_1:22491957-22491976 None:intergenic 55.0%
CGTATCATCTCCCGGAGATC+TGG - chr5_1:22491958-22491977 Msa0724200:three_prime_UTR 55.0%
TTCTGGACTGCCAGATCTCC+GGG + chr5_1:22491971-22491990 None:intergenic 55.0%
CTTCTGGACTGCCAGATCTC+CGG + chr5_1:22491972-22491991 None:intergenic 55.0%
! CTTTTCCGGCCATGGTTCAG+TGG + chr5_1:22492056-22492075 None:intergenic 55.0%
TGCGTTTCTACCGGCAATGG+TGG - chr5_1:22492107-22492126 Msa0724200:CDS 55.0%
GTTTCTACCGGCAATGGTGG+TGG - chr5_1:22492110-22492129 Msa0724200:CDS 55.0%
CCGTGGCAATTCCAACAACG+TGG - chr5_1:22492133-22492152 Msa0724200:CDS 55.0%
GTGGGAGTGGTGACCGAAAA+AGG - chr5_1:22492997-22493016 Msa0724200:intron 55.0%
! CTGAGGCTGACACACTGACT+CGG - chr5_1:22493766-22493785 Msa0724200:intron 55.0%
!! CTGACACACTGACTCGGCTA+TGG - chr5_1:22493772-22493791 Msa0724200:intron 55.0%
! GCTACAAGAGAGTACAGCCG+AGG - chr5_1:22494895-22494914 Msa0724200:CDS 55.0%
! ACCACTCTGGTGATGCACCT+CGG + chr5_1:22494915-22494934 None:intergenic 55.0%
CACTGGACAGTGTAGCGTGG+TGG + chr5_1:22491778-22491797 None:intergenic 60.0%
GGACACTGGACAGTGTAGCG+TGG + chr5_1:22491781-22491800 None:intergenic 60.0%
GGGGCTAAACTGCGGTCTTC+TGG + chr5_1:22491988-22492007 None:intergenic 60.0%
CCGAAGCTGGGGCTAAACTG+CGG + chr5_1:22491996-22492015 None:intergenic 60.0%
CCGCAGTTTAGCCCCAGCTT+CGG - chr5_1:22491993-22492012 Msa0724200:three_prime_UTR 60.0%
!! GACCCCTTCTGGCTCGAACA+TGG + chr5_1:22493118-22493137 None:intergenic 60.0%
GCCGAGGTGCATCACCAGAG+TGG - chr5_1:22494911-22494930 Msa0724200:CDS 65.0%
!! ACCGGCAATGGTGGTGGCCG+TGG - chr5_1:22492116-22492135 Msa0724200:CDS 70.0%
GCCACGGCCACCACCATTGC+CGG + chr5_1:22492120-22492139 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 22491698 22495347 22491698 ID=Msa0724200;Name=Msa0724200
chr5_1 mRNA 22491698 22495347 22491698 ID=Msa0724200-mRNA-1;Parent=Msa0724200;Name=Msa0724200-mRNA-1;_AED=0.07;_eAED=0.07;_QI=250|1|1|1|0.83|0.71|7|346|241
chr5_1 exon 22491698 22491835 22491698 ID=Msa0724200-mRNA-1:exon:8539;Parent=Msa0724200-mRNA-1
chr5_1 exon 22491862 22492198 22491862 ID=Msa0724200-mRNA-1:exon:8538;Parent=Msa0724200-mRNA-1
chr5_1 exon 22492573 22492644 22492573 ID=Msa0724200-mRNA-1:exon:8537;Parent=Msa0724200-mRNA-1
chr5_1 exon 22492738 22492806 22492738 ID=Msa0724200-mRNA-1:exon:8536;Parent=Msa0724200-mRNA-1
chr5_1 exon 22493031 22493096 22493031 ID=Msa0724200-mRNA-1:exon:8535;Parent=Msa0724200-mRNA-1
chr5_1 exon 22493876 22494058 22493876 ID=Msa0724200-mRNA-1:exon:8534;Parent=Msa0724200-mRNA-1
chr5_1 exon 22494891 22495347 22494891 ID=Msa0724200-mRNA-1:exon:8533;Parent=Msa0724200-mRNA-1
chr5_1 five_prime_UTR 22495098 22495347 22495098 ID=Msa0724200-mRNA-1:five_prime_utr;Parent=Msa0724200-mRNA-1
chr5_1 CDS 22494891 22495097 22494891 ID=Msa0724200-mRNA-1:cds;Parent=Msa0724200-mRNA-1
chr5_1 CDS 22493876 22494058 22493876 ID=Msa0724200-mRNA-1:cds;Parent=Msa0724200-mRNA-1
chr5_1 CDS 22493031 22493096 22493031 ID=Msa0724200-mRNA-1:cds;Parent=Msa0724200-mRNA-1
chr5_1 CDS 22492738 22492806 22492738 ID=Msa0724200-mRNA-1:cds;Parent=Msa0724200-mRNA-1
chr5_1 CDS 22492573 22492644 22492573 ID=Msa0724200-mRNA-1:cds;Parent=Msa0724200-mRNA-1
chr5_1 CDS 22492070 22492198 22492070 ID=Msa0724200-mRNA-1:cds;Parent=Msa0724200-mRNA-1
chr5_1 three_prime_UTR 22491862 22492069 22491862 ID=Msa0724200-mRNA-1:three_prime_utr;Parent=Msa0724200-mRNA-1
chr5_1 three_prime_UTR 22491698 22491835 22491698 ID=Msa0724200-mRNA-1:three_prime_utr;Parent=Msa0724200-mRNA-1
Gene Sequence

>Msa0724200

ATGGATCCAGCGTATCATCTCCCGGAGATCTGGCAGTCCAGAAGACCGCAGTTTAGCCCCAGCTTCGGAGATTTTCCAATGGAAGATCTCAGTACTGAACAAAAACCACTGAACCATGGCCGGAAAAGTAGAATAGAGACGAAGGAAGATTCAGTTAAATGCGTTTCTACCGGCAATGGTGGTGGCCGTGGCAATTCCAACAACGTGAATGATGATGGTGGGAGTGGTGACCGAAAAAGGAGTAAGACATCAGGGAACAGTAAAGGAGAAGAAAACAGTTCAGGAAAGCATGCGGAAGAAACTAGTGTTGAGCCACATCCTAAGAAAGACTACATCCATGTTCGAGCCAGAAGGGGTCAAGCTACTGATAGCCATAGTCTTGCAGAAAGAGCTAGAAGGGAAAAGATTAGTGAAAGGATGAAAACTCTTCAGGATTTAGTCCCTGGTTGCAACAAGGTTATTGGAAAAGCATTGGTCCTTGATGAGATAATCAATTATATCCAATCACTTCACCACCAAGTAGAGTTTTTGTCGATGAAGCTTGAAGCAGTAAATTCAAGACCAACTCCTGGTATTGAGGCGTTTCCTCTTAAAACTTTTGATCAGCAAACATATGATACAACCACCATACCATTCACTTCACAAGCTACAAGAGAGTACAGCCGAGGTGCATCACCAGAGTGGTTACATATGCAGCTGGGAGGTGGTTTTGAAAGAACAGCATAA
Protein sequence

>Msa0724200

MDPAYHLPEIWQSRRPQFSPSFGDFPMEDLSTEQKPLNHGRKSRIETKEDSVKCVSTGNGGGRGNSNNVNDDGGSGDRKRSKTSGNSKGEENSSGKHAEETSVEPHPKKDYIHVRARRGQATDSHSLAERARREKISERMKTLQDLVPGCNKVIGKALVLDEIINYIQSLHHQVEFLSMKLEAVNSRPTPGIEAFPLKTFDQQTYDTTTIPFTSQATREYSRGASPEWLHMQLGGGFERTA*