AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0724690

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724690 MtrunA17_Chr5g0415941 95.195 333 7 1 1 333 1 324 0.0 642
Msa0724690 MtrunA17_Chr8g0362751 51.818 330 98 7 10 333 12 286 3.23e-97 289
Msa0724690 MtrunA17_Chr4g0060031 47.293 351 151 11 1 333 1 335 6.97e-79 244
Msa0724690 MtrunA17_Chr6g0450991 47.716 197 89 3 87 280 67 252 1.23e-42 149
Msa0724690 MtrunA17_Chr6g0453021 43.388 242 95 10 39 261 41 259 5.89e-40 141
Msa0724690 MtrunA17_Chr8g0381741 64.815 108 37 1 77 183 43 150 2.17e-39 141
Msa0724690 MtrunA17_Chr3g0123691 49.697 165 64 3 70 219 47 207 5.76e-39 139
Msa0724690 MtrunA17_Chr3g0119291 66.327 98 33 0 87 184 59 156 2.26e-37 134
Msa0724690 MtrunA17_Chr8g0362151 66.667 96 32 0 87 182 77 172 6.96e-37 134
Msa0724690 MtrunA17_Chr5g0416391 60.169 118 46 1 66 182 55 172 7.51e-37 134
Msa0724690 MtrunA17_Chr7g0217111 57.658 111 45 1 74 182 65 175 3.79e-31 118
Msa0724690 MtrunA17_Chr1g0179581 56.250 96 35 1 82 177 23 111 1.28e-27 104
Msa0724690 MtrunA17_Chr7g0265521 55.670 97 36 1 87 183 63 152 5.95e-27 106
Msa0724690 MtrunA17_Chr3g0127511 54.945 91 41 0 89 179 40 130 8.06e-26 103
Msa0724690 MtrunA17_Chr8g0346251 35.849 212 109 6 91 294 45 237 1.66e-24 100
Msa0724690 MtrunA17_Chr5g0403701 60.563 71 28 0 87 157 53 123 8.86e-20 86.3
Msa0724690 MtrunA17_Chr4g0055851 45.902 122 53 4 67 186 103 213 1.81e-19 87.0
Msa0724690 MtrunA17_Chr5g0399491 39.535 172 77 6 20 185 78 228 1.95e-19 87.0
Msa0724690 MtrunA17_Chr5g0403691 60.563 71 28 0 87 157 53 123 3.09e-19 85.1
Msa0724690 MtrunA17_Chr4g0071411 48.352 91 40 2 90 180 91 174 2.88e-17 79.3
Msa0724690 MtrunA17_Chr7g0258831 47.872 94 42 1 87 180 160 246 2.90e-17 80.9
Msa0724690 MtrunA17_Chr2g0308611 44.340 106 52 1 75 180 188 286 4.36e-17 80.9
Msa0724690 MtrunA17_Chr5g0400781 44.860 107 50 2 75 181 113 210 8.92e-17 79.0
Msa0724690 MtrunA17_Chr1g0175651 46.809 94 43 1 87 180 154 240 1.78e-16 78.6
Msa0724690 MtrunA17_Chr8g0335131 47.525 101 45 2 87 186 146 239 1.89e-16 78.6
Msa0724690 MtrunA17_Chr4g0054421 43.925 107 52 2 74 180 115 213 8.16e-16 76.3
Msa0724690 MtrunA17_Chr1g0151971 46.316 95 44 1 87 181 130 217 1.41e-15 75.9
Msa0724690 MtrunA17_Chr4g0044091 37.121 132 62 3 87 218 65 175 1.43e-15 74.3
Msa0724690 MtrunA17_Chr3g0135331 48.611 72 37 0 87 158 145 216 3.61e-13 69.3
Msa0724690 MtrunA17_Chr2g0299031 41.489 94 48 1 87 180 82 168 2.67e-12 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0724690 AT3G01470.1 41.991 231 103 7 51 273 30 237 2.05e-42 148
Msa0724690 AT4G40060.1 55.385 130 52 2 76 202 45 171 3.26e-42 148
Msa0724690 AT2G22430.1 69.072 97 30 0 87 183 62 158 2.75e-40 144
Msa0724690 AT5G65310.2 68.041 97 31 0 87 183 54 150 1.26e-38 139
Msa0724690 AT5G65310.1 68.041 97 31 0 87 183 72 168 1.53e-38 139
Msa0724690 AT1G69780.1 64.545 110 38 1 74 182 71 180 2.45e-38 138
Msa0724690 AT3G01220.1 49.068 161 68 3 50 198 46 204 1.16e-36 134
Msa0724690 AT5G15150.1 60.000 115 44 1 66 180 96 208 4.19e-36 133
Msa0724690 AT1G27045.1 45.963 161 65 4 37 197 36 174 5.82e-33 122
Msa0724690 AT1G26960.1 58.182 110 45 1 74 182 57 166 1.08e-32 122
Msa0724690 AT1G27045.5 57.658 111 43 1 87 197 25 131 4.93e-32 118
Msa0724690 AT1G27045.3 57.658 111 43 1 87 197 25 131 4.93e-32 118
Msa0724690 AT1G27045.2 57.658 111 43 1 87 197 17 123 7.45e-32 117
Msa0724690 AT1G27045.4 46.259 147 60 4 37 183 36 163 2.61e-30 115
Msa0724690 AT2G46680.1 49.541 109 55 0 83 191 28 136 2.01e-28 111
Msa0724690 AT3G61890.1 52.381 105 49 1 90 194 33 136 1.17e-27 108
Msa0724690 AT2G46680.2 44.800 125 68 1 83 207 28 151 7.82e-27 107
Msa0724690 AT5G03790.1 53.608 97 38 1 87 183 77 166 1.66e-25 102
Msa0724690 AT5G03790.2 54.839 93 35 1 87 179 77 162 1.73e-24 99.0
Msa0724690 AT2G36610.1 47.222 108 42 2 84 183 68 168 6.23e-24 97.1
Msa0724690 AT4G36740.1 50.485 103 44 1 87 189 55 150 1.98e-22 94.0
Msa0724690 AT4G36740.2 50.485 103 44 1 87 189 56 151 2.00e-22 94.0
Msa0724690 AT2G18550.1 45.378 119 58 1 87 205 61 172 2.67e-22 93.6
Msa0724690 AT5G53980.1 46.392 97 52 0 87 183 11 107 1.01e-20 87.8
Msa0724690 AT5G66700.1 58.333 72 30 0 87 158 71 142 5.30e-20 87.8
Msa0724690 AT5G06710.1 47.368 95 43 1 87 181 190 277 3.73e-17 81.6
Msa0724690 AT4G17460.1 45.217 115 49 4 75 186 125 228 6.50e-17 80.1
Msa0724690 AT5G47370.1 39.695 131 64 3 57 186 107 223 2.14e-16 78.6
Msa0724690 AT2G01430.1 39.706 136 64 4 50 180 103 225 2.51e-16 78.2
Msa0724690 AT2G44910.1 47.000 100 45 2 87 185 163 255 3.17e-16 78.6
Msa0724690 AT3G60390.1 47.000 100 45 2 87 185 162 254 5.68e-16 77.8
Msa0724690 AT4G16780.1 46.000 100 46 2 87 185 129 221 1.65e-15 76.3
Msa0724690 AT2G22800.1 44.211 95 46 1 87 181 113 200 7.13e-15 73.9
Msa0724690 AT4G37790.1 43.617 94 46 1 87 180 126 212 1.45e-14 73.2
Msa0724690 AT5G06710.4 58.491 53 22 0 87 139 190 242 1.63e-12 67.4
Msa0724690 AT1G70920.1 43.299 97 48 1 84 180 66 155 2.36e-12 65.9
Msa0724690 AT1G70920.2 43.299 97 48 1 84 180 36 125 3.17e-12 64.7
Msa0724690 AT2G01430.2 41.053 95 45 3 50 139 103 191 3.90e-12 65.1

Find 97 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATGAAAATTCTTGTAATTT+TGG 0.015177 5_1:+23621436 Msa0724690:CDS
CTGAAGCCCTTGAATCTCTT+TGG 0.177337 5_1:+23619772 Msa0724690:CDS
TCAATTACAAATTCAGAAAA+TGG 0.179632 5_1:+23621145 Msa0724690:CDS
TGAACCTTGCCCTTCTGTTT+TGG 0.204900 5_1:-23620494 None:intergenic
CCAAAAGTTCTTTCCCTATA+AGG 0.235655 5_1:+23619668 Msa0724690:five_prime_UTR
CCTTATAGGGAAAGAACTTT+TGG 0.238704 5_1:-23619668 None:intergenic
ATTACTGGGAGAAATATTTA+AGG 0.241712 5_1:-23619444 None:intergenic
TTCTCTTTCTCTTTATCTCT+TGG 0.249115 5_1:-23621052 None:intergenic
TGCCATAAGAACAGCCTTAT+AGG 0.265185 5_1:-23619682 None:intergenic
GCAAGTTGAACTTTCCTATC+AGG 0.270065 5_1:-23620429 None:intergenic
TAGCAAACATCTTCAACTTT+TGG 0.273698 5_1:-23621403 None:intergenic
TCCCTATAAGGCTGTTCTTA+TGG 0.281279 5_1:+23619680 Msa0724690:exon
TGAAGCCCTTGAATCTCTTT+GGG 0.300479 5_1:+23619773 Msa0724690:CDS
TGAGGTGAATTGATTGCTTC+TGG 0.314138 5_1:-23621094 None:intergenic
CAAAGTGTCACTCCATAATA+TGG 0.334237 5_1:+23621171 Msa0724690:CDS
AACCAAGGCAAGTTGCTATA+TGG 0.341312 5_1:+23620469 Msa0724690:CDS
GTGGAAATTTAAATTCAATA+AGG 0.341810 5_1:-23621493 None:intergenic
TCTCTTTCTCTTTATCTCTT+GGG 0.342274 5_1:-23621051 None:intergenic
TAAATATTTCTCCCAGTAAT+GGG 0.359910 5_1:+23619447 Msa0724690:five_prime_UTR
CAAAAGGTTTGATCTTCAAC+AGG 0.362492 5_1:-23621463 None:intergenic
AAAATTAAAGTTTCAAACTT+TGG 0.368181 5_1:-23621651 None:intergenic
GGAGAGATCATACCCATTAC+TGG 0.378520 5_1:-23619459 None:intergenic
TTTCTCAAGTTGTTGAAAGA+AGG 0.381022 5_1:-23620283 None:intergenic
TAATCTAAAACTCTCTTGTA+AGG 0.385396 5_1:+23619621 Msa0724690:five_prime_UTR
TACTATAATGTGGGAATTGT+GGG 0.397120 5_1:-23619487 None:intergenic
GCCATAAGAACAGCCTTATA+GGG 0.397680 5_1:-23619681 None:intergenic
GTAATTGAGGTTATATCCAT+TGG 0.401260 5_1:-23621130 None:intergenic
TCAGAGAGAAGAGGGTAGAC+AGG 0.407332 5_1:-23619344 None:intergenic
TACTAAAGAATAAAATCAAA+AGG 0.409706 5_1:+23621578 Msa0724690:three_prime_UTR
GATAGCCCACATTGCAATGA+TGG 0.423802 5_1:+23621250 Msa0724690:CDS
ATTGGATCTTTGTTGTTATG+AGG 0.430991 5_1:-23621112 None:intergenic
TTAAATATTTCTCCCAGTAA+TGG 0.437861 5_1:+23619446 Msa0724690:five_prime_UTR
CACTGCAGATGTAACTCTAC+TGG 0.447664 5_1:+23621513 Msa0724690:three_prime_UTR
TTCTCAAGTTGTTGAAAGAA+GGG 0.453337 5_1:-23620282 None:intergenic
CATATTATGGAGTGACACTT+TGG 0.455719 5_1:-23621170 None:intergenic
GGGTGTCAGAAGTAATAAAT+TGG 0.458938 5_1:-23619420 None:intergenic
TTACTATAATGTGGGAATTG+TGG 0.463869 5_1:-23619488 None:intergenic
AAAGTTTCAAACTTTGGCTA+AGG 0.472120 5_1:-23621645 None:intergenic
GTTCAACTTGCAAAAGAGCT+TGG 0.481261 5_1:+23620441 Msa0724690:CDS
AACCATATAGCAACTTGCCT+TGG 0.481745 5_1:-23620471 None:intergenic
TGTGAGAAATCTGAATGATC+AGG 0.485138 5_1:-23621325 None:intergenic
GGTTGGGGAGAGTTGAGAGT+TGG 0.492028 5_1:-23619320 None:intergenic
GATTCTTTCTTATGTGTGGT+GGG 0.495733 5_1:-23619259 None:intergenic
GAATGACAAGTTAAAAGAAG+AGG 0.495747 5_1:+23620602 Msa0724690:CDS
TATAAGGCTGTTCTTATGGC+AGG 0.496797 5_1:+23619684 Msa0724690:exon
TTACTGGGAGAAATATTTAA+GGG 0.498128 5_1:-23619443 None:intergenic
CAGAGAGAAGAGGGTAGACA+GGG 0.502286 5_1:-23619343 None:intergenic
ATCAACAAGGAAAGAAAAGA+AGG 0.502471 5_1:+23620346 Msa0724690:CDS
CAATTACAAATTCAGAAAAT+GGG 0.504151 5_1:+23621146 Msa0724690:CDS
TCAATAAGGCCAGAAACAAA+AGG 0.504416 5_1:-23621479 None:intergenic
AAAACAAGCTTGAACCTGAT+AGG 0.509669 5_1:+23620415 Msa0724690:CDS
AAGAGCTTGGTTTGCAACCA+AGG 0.513381 5_1:+23620454 Msa0724690:CDS
GAGAGATTCTTTCTTATGTG+TGG 0.519324 5_1:-23619263 None:intergenic
AGATTCTTTCTTATGTGTGG+TGG 0.520280 5_1:-23619260 None:intergenic
AGATCACCTTGAAAAGAAGC+AGG 0.525676 5_1:-23619804 None:intergenic
TGTGAACCCAAAGAGATTCA+AGG 0.525903 5_1:-23619779 None:intergenic
AATAAATTGGTGGTCAGAGA+AGG 0.539262 5_1:-23619407 None:intergenic
GTTGAGGATTACTATAATGT+GGG 0.546123 5_1:-23619496 None:intergenic
AGATTTCTCACAAGATGAAG+AGG 0.546898 5_1:+23621336 Msa0724690:CDS
ATTCTTTCTTATGTGTGGTG+GGG 0.548077 5_1:-23619258 None:intergenic
TGTTCCCATCATTGCAATGT+GGG 0.548653 5_1:-23621255 None:intergenic
ACTAAAGAATAAAATCAAAA+GGG 0.549706 5_1:+23621579 Msa0724690:three_prime_UTR
GAATTTATGACGAAAGAAGC+AGG 0.555083 5_1:-23619520 None:intergenic
TGTTGAGGATTACTATAATG+TGG 0.560635 5_1:-23619497 None:intergenic
GGTAGGTTGGTATGTGTGTG+TGG 0.563071 5_1:-23619646 None:intergenic
TCATAACAACAAAGATCCAA+TGG 0.563990 5_1:+23621114 Msa0724690:CDS
GGATTCAGGTTCAAATTCAG+TGG 0.566281 5_1:+23620212 Msa0724690:intron
GCAGAAGGTCAGAGAGAAGA+GGG 0.566324 5_1:-23619352 None:intergenic
TCAAGGGCTTCAGAAGTACA+AGG 0.569376 5_1:-23619762 None:intergenic
GACGAAAGAAGCAGGTGTTG+AGG 0.573372 5_1:-23619512 None:intergenic
CTATATGGTTCCAAAACAGA+AGG 0.583686 5_1:+23620484 Msa0724690:CDS
ATAGCCCACATTGCAATGAT+GGG 0.583931 5_1:+23621251 Msa0724690:CDS
CAGTAGAGTTACATCTGCAG+TGG 0.590442 5_1:-23621512 None:intergenic
GTGAACCCAAAGAGATTCAA+GGG 0.591669 5_1:-23619778 None:intergenic
ATGTGGGAATTGTGGGAGTG+AGG 0.596949 5_1:-23619480 None:intergenic
CTTGAGAAAGAAGAGAATTG+TGG 0.599550 5_1:+23620297 Msa0724690:CDS
GGGTTACATTGTTATTAACA+AGG 0.600439 5_1:+23621599 Msa0724690:three_prime_UTR
GATCACCTTGAAAAGAAGCA+GGG 0.602083 5_1:-23619803 None:intergenic
TGTCAGAAGTAATAAATTGG+TGG 0.604676 5_1:-23619417 None:intergenic
TGTGGTGGGGAACTTTGATG+TGG 0.605956 5_1:-23619245 None:intergenic
GAGAGATCATACCCATTACT+GGG 0.606961 5_1:-23619458 None:intergenic
GGCAGAAGGTCAGAGAGAAG+AGG 0.608301 5_1:-23619353 None:intergenic
AAAGCATGTGAAGAATCTGT+AGG 0.619583 5_1:-23621298 None:intergenic
TACTGGGAGAAATATTTAAG+GGG 0.628855 5_1:-23619442 None:intergenic
CTGGGAGAAATATTTAAGGG+GGG 0.644250 5_1:-23619440 None:intergenic
TTGTTCCCATCATTGCAATG+TGG 0.645404 5_1:-23621256 None:intergenic
ACTGGGAGAAATATTTAAGG+GGG 0.646785 5_1:-23619441 None:intergenic
AAGGCTGTTCTTATGGCAGG+TGG 0.647915 5_1:+23619687 Msa0724690:exon
ATCACCTTGAAAAGAAGCAG+GGG 0.648333 5_1:-23619802 None:intergenic
GGTTCCAAAACAGAAGGGCA+AGG 0.651221 5_1:+23620490 Msa0724690:CDS
GAGAGAAGAGGGTAGACAGG+GGG 0.669788 5_1:-23619341 None:intergenic
TATATGGTTCCAAAACAGAA+GGG 0.680215 5_1:+23620485 Msa0724690:CDS
AGAGAGAAGAGGGTAGACAG+GGG 0.680491 5_1:-23619342 None:intergenic
AAAAGGTTTGATCTTCAACA+GGG 0.685076 5_1:-23621462 None:intergenic
GAAGCATGCTACCATCAACA+AGG 0.695864 5_1:+23620333 Msa0724690:CDS
CAAGGGCTTCAGAAGTACAA+GGG 0.720149 5_1:-23619761 None:intergenic
TGGTGGTGGAAGCAACAGAG+TGG 0.722441 5_1:+23620248 Msa0724690:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTACTTCTTA+TGG + chr5_1:23619576-23619595 Msa0724690:five_prime_UTR 10.0%
!!! TTTTTTTTTTTACTTCTTAT+GGG + chr5_1:23619577-23619596 Msa0724690:five_prime_UTR 10.0%
!!! AAAAAAGACTATTTTTTTTA+TGG - chr5_1:23620103-23620122 None:intergenic 10.0%
!!! ATTTTTTATTTTGTTACAAT+AGG + chr5_1:23621003-23621022 Msa0724690:intron 10.0%
!!! TTTTTTTTTTTTACTTCTTA+TGG + chr5_1:23619576-23619595 Msa0724690:five_prime_UTR 10.0%
!!! TTTTTTTTTTTACTTCTTAT+GGG + chr5_1:23619577-23619596 Msa0724690:five_prime_UTR 10.0%
!!! AAAAAAGACTATTTTTTTTA+TGG - chr5_1:23620103-23620122 None:intergenic 10.0%
!!! ATTTTTTATTTTGTTACAAT+AGG + chr5_1:23621003-23621022 Msa0724690:intron 10.0%
!!! TTTTTTTTTTACTTCTTATG+GGG + chr5_1:23619578-23619597 Msa0724690:five_prime_UTR 15.0%
!!! TGAAAAAGACTAATTTTATA+TGG - chr5_1:23620139-23620158 None:intergenic 15.0%
!!! ATGAAAATTCTTGTAATTTT+GGG + chr5_1:23621437-23621456 Msa0724690:CDS 15.0%
!! TACTAAAGAATAAAATCAAA+AGG + chr5_1:23621578-23621597 Msa0724690:three_prime_UTR 15.0%
!! ACTAAAGAATAAAATCAAAA+GGG + chr5_1:23621579-23621598 Msa0724690:three_prime_UTR 15.0%
!! AAAATTAAAGTTTCAAACTT+TGG - chr5_1:23621654-23621673 None:intergenic 15.0%
!!! TTTTTTTTTTACTTCTTATG+GGG + chr5_1:23619578-23619597 Msa0724690:five_prime_UTR 15.0%
!!! TGAAAAAGACTAATTTTATA+TGG - chr5_1:23620139-23620158 None:intergenic 15.0%
!!! ATGAAAATTCTTGTAATTTT+GGG + chr5_1:23621437-23621456 Msa0724690:CDS 15.0%
!! TACTAAAGAATAAAATCAAA+AGG + chr5_1:23621578-23621597 Msa0724690:three_prime_UTR 15.0%
!! ACTAAAGAATAAAATCAAAA+GGG + chr5_1:23621579-23621598 Msa0724690:three_prime_UTR 15.0%
!! AAAATTAAAGTTTCAAACTT+TGG - chr5_1:23621654-23621673 None:intergenic 15.0%
!!! AAAAAGTGTTGATTTTCAAA+GGG - chr5_1:23619560-23619579 None:intergenic 20.0%
!!! AAAAAAGTGTTGATTTTCAA+AGG - chr5_1:23619561-23619580 None:intergenic 20.0%
!! TGAAAATCTACATTAGAATT+TGG - chr5_1:23620740-23620759 None:intergenic 20.0%
!! AATGAGTTAATGATTGAATA+TGG + chr5_1:23620966-23620985 Msa0724690:intron 20.0%
!! ATGAGTTAATGATTGAATAT+GGG + chr5_1:23620967-23620986 Msa0724690:intron 20.0%
!!! ATTTTCTGAATTTGTAATTG+AGG - chr5_1:23621146-23621165 None:intergenic 20.0%
!! TCAATTACAAATTCAGAAAA+TGG + chr5_1:23621145-23621164 Msa0724690:CDS 20.0%
!! CAATTACAAATTCAGAAAAT+GGG + chr5_1:23621146-23621165 Msa0724690:CDS 20.0%
!!! TACATTTTAGTACCATATTA+TGG - chr5_1:23621186-23621205 None:intergenic 20.0%
!!! AATTACAAGAATTTTCATGT+GGG - chr5_1:23621435-23621454 None:intergenic 20.0%
!!! AAATTACAAGAATTTTCATG+TGG - chr5_1:23621436-23621455 None:intergenic 20.0%
!!! CATGAAAATTCTTGTAATTT+TGG + chr5_1:23621436-23621455 Msa0724690:CDS 20.0%
!! GTGGAAATTTAAATTCAATA+AGG - chr5_1:23621496-23621515 None:intergenic 20.0%
!!! TGATTTTATTCTTTAGTAGA+AGG - chr5_1:23621576-23621595 None:intergenic 20.0%
!!! AAAAAGTGTTGATTTTCAAA+GGG - chr5_1:23619560-23619579 None:intergenic 20.0%
!!! AAAAAAGTGTTGATTTTCAA+AGG - chr5_1:23619561-23619580 None:intergenic 20.0%
!! TGAAAATCTACATTAGAATT+TGG - chr5_1:23620740-23620759 None:intergenic 20.0%
!! AATGAGTTAATGATTGAATA+TGG + chr5_1:23620966-23620985 Msa0724690:intron 20.0%
!! ATGAGTTAATGATTGAATAT+GGG + chr5_1:23620967-23620986 Msa0724690:intron 20.0%
!!! ATTTTCTGAATTTGTAATTG+AGG - chr5_1:23621146-23621165 None:intergenic 20.0%
!! TCAATTACAAATTCAGAAAA+TGG + chr5_1:23621145-23621164 Msa0724690:CDS 20.0%
!! CAATTACAAATTCAGAAAAT+GGG + chr5_1:23621146-23621165 Msa0724690:CDS 20.0%
!!! TACATTTTAGTACCATATTA+TGG - chr5_1:23621186-23621205 None:intergenic 20.0%
!!! AATTACAAGAATTTTCATGT+GGG - chr5_1:23621435-23621454 None:intergenic 20.0%
!!! AAATTACAAGAATTTTCATG+TGG - chr5_1:23621436-23621455 None:intergenic 20.0%
!!! CATGAAAATTCTTGTAATTT+TGG + chr5_1:23621436-23621455 Msa0724690:CDS 20.0%
!! GTGGAAATTTAAATTCAATA+AGG - chr5_1:23621496-23621515 None:intergenic 20.0%
!!! TGATTTTATTCTTTAGTAGA+AGG - chr5_1:23621576-23621595 None:intergenic 20.0%
! TTACTGGGAGAAATATTTAA+GGG - chr5_1:23619446-23619465 None:intergenic 25.0%
! ATTACTGGGAGAAATATTTA+AGG - chr5_1:23619447-23619466 None:intergenic 25.0%
! TTAAATATTTCTCCCAGTAA+TGG + chr5_1:23619446-23619465 Msa0724690:five_prime_UTR 25.0%
! TAAATATTTCTCCCAGTAAT+GGG + chr5_1:23619447-23619466 Msa0724690:five_prime_UTR 25.0%
!!! CAAGAGAGTTTTAGATTAAA+GGG - chr5_1:23619619-23619638 None:intergenic 25.0%
!!! ACAAGAGAGTTTTAGATTAA+AGG - chr5_1:23619620-23619639 None:intergenic 25.0%
!! TAATCTAAAACTCTCTTGTA+AGG + chr5_1:23619621-23619640 Msa0724690:five_prime_UTR 25.0%
! CAATTCAAATATACACATGA+TGG - chr5_1:23619898-23619917 None:intergenic 25.0%
! CATGTGTATATTTGAATTGA+CGG + chr5_1:23619899-23619918 Msa0724690:intron 25.0%
! CAATTGAAAGTTTGTATTGA+CGG - chr5_1:23619976-23619995 None:intergenic 25.0%
!! TTTTCTTAACATCATGAAAG+TGG + chr5_1:23620053-23620072 Msa0724690:intron 25.0%
! TTTCTTAACATCATGAAAGT+GGG + chr5_1:23620054-23620073 Msa0724690:intron 25.0%
! CATAGAGTTGAATTATAACA+TGG + chr5_1:23620172-23620191 Msa0724690:intron 25.0%
!! ATTTCTTGAAAAGAGTTTTG+AGG + chr5_1:23620389-23620408 Msa0724690:CDS 25.0%
! AAACAGCTTGAAAAAGATTA+TGG + chr5_1:23620522-23620541 Msa0724690:CDS 25.0%
! TGAGTTAATGATTGAATATG+GGG + chr5_1:23620968-23620987 Msa0724690:intron 25.0%
! TCTACTGGAAGAAATAAAAA+TGG + chr5_1:23621528-23621547 Msa0724690:three_prime_UTR 25.0%
! TTACTGGGAGAAATATTTAA+GGG - chr5_1:23619446-23619465 None:intergenic 25.0%
! ATTACTGGGAGAAATATTTA+AGG - chr5_1:23619447-23619466 None:intergenic 25.0%
! TTAAATATTTCTCCCAGTAA+TGG + chr5_1:23619446-23619465 Msa0724690:five_prime_UTR 25.0%
! TAAATATTTCTCCCAGTAAT+GGG + chr5_1:23619447-23619466 Msa0724690:five_prime_UTR 25.0%
!!! CAAGAGAGTTTTAGATTAAA+GGG - chr5_1:23619619-23619638 None:intergenic 25.0%
!!! ACAAGAGAGTTTTAGATTAA+AGG - chr5_1:23619620-23619639 None:intergenic 25.0%
!! TAATCTAAAACTCTCTTGTA+AGG + chr5_1:23619621-23619640 Msa0724690:five_prime_UTR 25.0%
! CAATTCAAATATACACATGA+TGG - chr5_1:23619898-23619917 None:intergenic 25.0%
! CATGTGTATATTTGAATTGA+CGG + chr5_1:23619899-23619918 Msa0724690:intron 25.0%
! CAATTGAAAGTTTGTATTGA+CGG - chr5_1:23619976-23619995 None:intergenic 25.0%
!! TTTTCTTAACATCATGAAAG+TGG + chr5_1:23620053-23620072 Msa0724690:intron 25.0%
! TTTCTTAACATCATGAAAGT+GGG + chr5_1:23620054-23620073 Msa0724690:intron 25.0%
! CATAGAGTTGAATTATAACA+TGG + chr5_1:23620172-23620191 Msa0724690:intron 25.0%
!! ATTTCTTGAAAAGAGTTTTG+AGG + chr5_1:23620389-23620408 Msa0724690:CDS 25.0%
! AAACAGCTTGAAAAAGATTA+TGG + chr5_1:23620522-23620541 Msa0724690:CDS 25.0%
! TGAGTTAATGATTGAATATG+GGG + chr5_1:23620968-23620987 Msa0724690:intron 25.0%
! TCTACTGGAAGAAATAAAAA+TGG + chr5_1:23621528-23621547 Msa0724690:three_prime_UTR 25.0%
TGTCAGAAGTAATAAATTGG+TGG - chr5_1:23619420-23619439 None:intergenic 30.0%
TACTGGGAGAAATATTTAAG+GGG - chr5_1:23619445-23619464 None:intergenic 30.0%
TACTATAATGTGGGAATTGT+GGG - chr5_1:23619490-23619509 None:intergenic 30.0%
TTACTATAATGTGGGAATTG+TGG - chr5_1:23619491-23619510 None:intergenic 30.0%
GTTGAGGATTACTATAATGT+GGG - chr5_1:23619499-23619518 None:intergenic 30.0%
TGTTGAGGATTACTATAATG+TGG - chr5_1:23619500-23619519 None:intergenic 30.0%
! CTTATAGGGAAAGAACTTTT+GGG - chr5_1:23619670-23619689 None:intergenic 30.0%
AAAAGAAGTGAGAAGAATTG+AGG - chr5_1:23619836-23619855 None:intergenic 30.0%
CGTCAATACAAACTTTCAAT+TGG + chr5_1:23619974-23619993 Msa0724690:intron 30.0%
!! TCAGTGGTTAATTTTGAGAA+TGG + chr5_1:23620228-23620247 Msa0724690:CDS 30.0%
! TTCTCAAGTTGTTGAAAGAA+GGG - chr5_1:23620285-23620304 None:intergenic 30.0%
! TTTCTCAAGTTGTTGAAAGA+AGG - chr5_1:23620286-23620305 None:intergenic 30.0%
! TTCTTTTCTTTCCTTGTTGA+TGG - chr5_1:23620347-23620366 None:intergenic 30.0%
ATCAACAAGGAAAGAAAAGA+AGG + chr5_1:23620346-23620365 Msa0724690:CDS 30.0%
TATATGGTTCCAAAACAGAA+GGG + chr5_1:23620485-23620504 Msa0724690:CDS 30.0%
GAATGACAAGTTAAAAGAAG+AGG + chr5_1:23620602-23620621 Msa0724690:CDS 30.0%
!!! ATGTGTATGTGTGTTTTGAT+AGG - chr5_1:23620867-23620886 None:intergenic 30.0%
TCTCTTTCTCTTTATCTCTT+GGG - chr5_1:23621054-23621073 None:intergenic 30.0%
TTCTCTTTCTCTTTATCTCT+TGG - chr5_1:23621055-23621074 None:intergenic 30.0%
!! ATTGGATCTTTGTTGTTATG+AGG - chr5_1:23621115-23621134 None:intergenic 30.0%
TCATAACAACAAAGATCCAA+TGG + chr5_1:23621114-23621133 Msa0724690:CDS 30.0%
GTAATTGAGGTTATATCCAT+TGG - chr5_1:23621133-23621152 None:intergenic 30.0%
! TAGCAAACATCTTCAACTTT+TGG - chr5_1:23621406-23621425 None:intergenic 30.0%
AAAAGGTTTGATCTTCAACA+GGG - chr5_1:23621465-23621484 None:intergenic 30.0%
!! AAGATCAAACCTTTTGTTTC+TGG + chr5_1:23621470-23621489 Msa0724690:CDS 30.0%
! GGGTTACATTGTTATTAACA+AGG + chr5_1:23621599-23621618 Msa0724690:three_prime_UTR 30.0%
AAAGTTTCAAACTTTGGCTA+AGG - chr5_1:23621648-23621667 None:intergenic 30.0%
TGTCAGAAGTAATAAATTGG+TGG - chr5_1:23619420-23619439 None:intergenic 30.0%
TACTGGGAGAAATATTTAAG+GGG - chr5_1:23619445-23619464 None:intergenic 30.0%
TACTATAATGTGGGAATTGT+GGG - chr5_1:23619490-23619509 None:intergenic 30.0%
TTACTATAATGTGGGAATTG+TGG - chr5_1:23619491-23619510 None:intergenic 30.0%
GTTGAGGATTACTATAATGT+GGG - chr5_1:23619499-23619518 None:intergenic 30.0%
TGTTGAGGATTACTATAATG+TGG - chr5_1:23619500-23619519 None:intergenic 30.0%
! CTTATAGGGAAAGAACTTTT+GGG - chr5_1:23619670-23619689 None:intergenic 30.0%
AAAAGAAGTGAGAAGAATTG+AGG - chr5_1:23619836-23619855 None:intergenic 30.0%
CGTCAATACAAACTTTCAAT+TGG + chr5_1:23619974-23619993 Msa0724690:intron 30.0%
!! TCAGTGGTTAATTTTGAGAA+TGG + chr5_1:23620228-23620247 Msa0724690:CDS 30.0%
! TTCTCAAGTTGTTGAAAGAA+GGG - chr5_1:23620285-23620304 None:intergenic 30.0%
! TTTCTCAAGTTGTTGAAAGA+AGG - chr5_1:23620286-23620305 None:intergenic 30.0%
! TTCTTTTCTTTCCTTGTTGA+TGG - chr5_1:23620347-23620366 None:intergenic 30.0%
ATCAACAAGGAAAGAAAAGA+AGG + chr5_1:23620346-23620365 Msa0724690:CDS 30.0%
TATATGGTTCCAAAACAGAA+GGG + chr5_1:23620485-23620504 Msa0724690:CDS 30.0%
GAATGACAAGTTAAAAGAAG+AGG + chr5_1:23620602-23620621 Msa0724690:CDS 30.0%
!!! ATGTGTATGTGTGTTTTGAT+AGG - chr5_1:23620867-23620886 None:intergenic 30.0%
TCTCTTTCTCTTTATCTCTT+GGG - chr5_1:23621054-23621073 None:intergenic 30.0%
TTCTCTTTCTCTTTATCTCT+TGG - chr5_1:23621055-23621074 None:intergenic 30.0%
!! ATTGGATCTTTGTTGTTATG+AGG - chr5_1:23621115-23621134 None:intergenic 30.0%
TCATAACAACAAAGATCCAA+TGG + chr5_1:23621114-23621133 Msa0724690:CDS 30.0%
GTAATTGAGGTTATATCCAT+TGG - chr5_1:23621133-23621152 None:intergenic 30.0%
! TAGCAAACATCTTCAACTTT+TGG - chr5_1:23621406-23621425 None:intergenic 30.0%
AAAAGGTTTGATCTTCAACA+GGG - chr5_1:23621465-23621484 None:intergenic 30.0%
!! AAGATCAAACCTTTTGTTTC+TGG + chr5_1:23621470-23621489 Msa0724690:CDS 30.0%
! GGGTTACATTGTTATTAACA+AGG + chr5_1:23621599-23621618 Msa0724690:three_prime_UTR 30.0%
AAAGTTTCAAACTTTGGCTA+AGG - chr5_1:23621648-23621667 None:intergenic 30.0%
ATTCTTTCTTATGTGTGGTG+GGG - chr5_1:23619261-23619280 None:intergenic 35.0%
GATTCTTTCTTATGTGTGGT+GGG - chr5_1:23619262-23619281 None:intergenic 35.0%
AGATTCTTTCTTATGTGTGG+TGG - chr5_1:23619263-23619282 None:intergenic 35.0%
GAGAGATTCTTTCTTATGTG+TGG - chr5_1:23619266-23619285 None:intergenic 35.0%
! TGCTTGTGAGTTTTCAAAGA+GGG - chr5_1:23619378-23619397 None:intergenic 35.0%
! ATGCTTGTGAGTTTTCAAAG+AGG - chr5_1:23619379-23619398 None:intergenic 35.0%
! AATAAATTGGTGGTCAGAGA+AGG - chr5_1:23619410-23619429 None:intergenic 35.0%
GGGTGTCAGAAGTAATAAAT+TGG - chr5_1:23619423-23619442 None:intergenic 35.0%
ACTGGGAGAAATATTTAAGG+GGG - chr5_1:23619444-23619463 None:intergenic 35.0%
GAATTTATGACGAAAGAAGC+AGG - chr5_1:23619523-23619542 None:intergenic 35.0%
! CCTTATAGGGAAAGAACTTT+TGG - chr5_1:23619671-23619690 None:intergenic 35.0%
CCAAAAGTTCTTTCCCTATA+AGG + chr5_1:23619668-23619687 Msa0724690:five_prime_UTR 35.0%
! ATGGTTTGTGTTTGATGACA+TGG + chr5_1:23620191-23620210 Msa0724690:intron 35.0%
!! GTGGTTAATTTTGAGAATGG+TGG + chr5_1:23620231-23620250 Msa0724690:CDS 35.0%
!! GTTAATTTTGAGAATGGTGG+TGG + chr5_1:23620234-23620253 Msa0724690:CDS 35.0%
CTTGAGAAAGAAGAGAATTG+TGG + chr5_1:23620297-23620316 Msa0724690:CDS 35.0%
AAAACAAGCTTGAACCTGAT+AGG + chr5_1:23620415-23620434 Msa0724690:CDS 35.0%
CTATATGGTTCCAAAACAGA+AGG + chr5_1:23620484-23620503 Msa0724690:CDS 35.0%
AGTTGACACACAAACGAAAT+TGG + chr5_1:23620640-23620659 Msa0724690:intron 35.0%
GTTAGCACATCAGTAAATGT+TGG + chr5_1:23620698-23620717 Msa0724690:intron 35.0%
CATATTATGGAGTGACACTT+TGG - chr5_1:23621173-23621192 None:intergenic 35.0%
! CAAAGTGTCACTCCATAATA+TGG + chr5_1:23621171-23621190 Msa0724690:CDS 35.0%
AAAGCATGTGAAGAATCTGT+AGG - chr5_1:23621301-23621320 None:intergenic 35.0%
TGTGAGAAATCTGAATGATC+AGG - chr5_1:23621328-23621347 None:intergenic 35.0%
AGATTTCTCACAAGATGAAG+AGG + chr5_1:23621336-23621355 Msa0724690:CDS 35.0%
! TCTTCAACTTTTGGTAAGCA+AGG - chr5_1:23621397-23621416 None:intergenic 35.0%
CAAAAGGTTTGATCTTCAAC+AGG - chr5_1:23621466-23621485 None:intergenic 35.0%
TCAATAAGGCCAGAAACAAA+AGG - chr5_1:23621482-23621501 None:intergenic 35.0%
ATTCTTTCTTATGTGTGGTG+GGG - chr5_1:23619261-23619280 None:intergenic 35.0%
GATTCTTTCTTATGTGTGGT+GGG - chr5_1:23619262-23619281 None:intergenic 35.0%
AGATTCTTTCTTATGTGTGG+TGG - chr5_1:23619263-23619282 None:intergenic 35.0%
GAGAGATTCTTTCTTATGTG+TGG - chr5_1:23619266-23619285 None:intergenic 35.0%
! TGCTTGTGAGTTTTCAAAGA+GGG - chr5_1:23619378-23619397 None:intergenic 35.0%
! ATGCTTGTGAGTTTTCAAAG+AGG - chr5_1:23619379-23619398 None:intergenic 35.0%
! AATAAATTGGTGGTCAGAGA+AGG - chr5_1:23619410-23619429 None:intergenic 35.0%
GGGTGTCAGAAGTAATAAAT+TGG - chr5_1:23619423-23619442 None:intergenic 35.0%
ACTGGGAGAAATATTTAAGG+GGG - chr5_1:23619444-23619463 None:intergenic 35.0%
GAATTTATGACGAAAGAAGC+AGG - chr5_1:23619523-23619542 None:intergenic 35.0%
! CCTTATAGGGAAAGAACTTT+TGG - chr5_1:23619671-23619690 None:intergenic 35.0%
CCAAAAGTTCTTTCCCTATA+AGG + chr5_1:23619668-23619687 Msa0724690:five_prime_UTR 35.0%
! ATGGTTTGTGTTTGATGACA+TGG + chr5_1:23620191-23620210 Msa0724690:intron 35.0%
!! GTGGTTAATTTTGAGAATGG+TGG + chr5_1:23620231-23620250 Msa0724690:CDS 35.0%
!! GTTAATTTTGAGAATGGTGG+TGG + chr5_1:23620234-23620253 Msa0724690:CDS 35.0%
CTTGAGAAAGAAGAGAATTG+TGG + chr5_1:23620297-23620316 Msa0724690:CDS 35.0%
AAAACAAGCTTGAACCTGAT+AGG + chr5_1:23620415-23620434 Msa0724690:CDS 35.0%
CTATATGGTTCCAAAACAGA+AGG + chr5_1:23620484-23620503 Msa0724690:CDS 35.0%
AGTTGACACACAAACGAAAT+TGG + chr5_1:23620640-23620659 Msa0724690:intron 35.0%
GTTAGCACATCAGTAAATGT+TGG + chr5_1:23620698-23620717 Msa0724690:intron 35.0%
CATATTATGGAGTGACACTT+TGG - chr5_1:23621173-23621192 None:intergenic 35.0%
! CAAAGTGTCACTCCATAATA+TGG + chr5_1:23621171-23621190 Msa0724690:CDS 35.0%
AAAGCATGTGAAGAATCTGT+AGG - chr5_1:23621301-23621320 None:intergenic 35.0%
TGTGAGAAATCTGAATGATC+AGG - chr5_1:23621328-23621347 None:intergenic 35.0%
AGATTTCTCACAAGATGAAG+AGG + chr5_1:23621336-23621355 Msa0724690:CDS 35.0%
! TCTTCAACTTTTGGTAAGCA+AGG - chr5_1:23621397-23621416 None:intergenic 35.0%
CAAAAGGTTTGATCTTCAAC+AGG - chr5_1:23621466-23621485 None:intergenic 35.0%
TCAATAAGGCCAGAAACAAA+AGG - chr5_1:23621482-23621501 None:intergenic 35.0%
! GCTTGTGAGTTTTCAAAGAG+GGG - chr5_1:23619377-23619396 None:intergenic 40.0%
CTGGGAGAAATATTTAAGGG+GGG - chr5_1:23619443-23619462 None:intergenic 40.0%
GAGAGATCATACCCATTACT+GGG - chr5_1:23619461-23619480 None:intergenic 40.0%
!! GAAAGAACTTTTGGGTAGGT+TGG - chr5_1:23619662-23619681 None:intergenic 40.0%
!! TAGGGAAAGAACTTTTGGGT+AGG - chr5_1:23619666-23619685 None:intergenic 40.0%
TCCCTATAAGGCTGTTCTTA+TGG + chr5_1:23619680-23619699 Msa0724690:exon 40.0%
! GCCATAAGAACAGCCTTATA+GGG - chr5_1:23619684-23619703 None:intergenic 40.0%
! TGCCATAAGAACAGCCTTAT+AGG - chr5_1:23619685-23619704 None:intergenic 40.0%
TATAAGGCTGTTCTTATGGC+AGG + chr5_1:23619684-23619703 Msa0724690:exon 40.0%
TGAAGCCCTTGAATCTCTTT+GGG + chr5_1:23619773-23619792 Msa0724690:CDS 40.0%
GTGAACCCAAAGAGATTCAA+GGG - chr5_1:23619781-23619800 None:intergenic 40.0%
TGTGAACCCAAAGAGATTCA+AGG - chr5_1:23619782-23619801 None:intergenic 40.0%
ATCACCTTGAAAAGAAGCAG+GGG - chr5_1:23619805-23619824 None:intergenic 40.0%
GATCACCTTGAAAAGAAGCA+GGG - chr5_1:23619806-23619825 None:intergenic 40.0%
AGATCACCTTGAAAAGAAGC+AGG - chr5_1:23619807-23619826 None:intergenic 40.0%
AGAAGTGAGAAGAATTGAGG+AGG - chr5_1:23619833-23619852 None:intergenic 40.0%
! GTGTTTGATGACATGGATTC+AGG + chr5_1:23620198-23620217 Msa0724690:intron 40.0%
! GGATTCAGGTTCAAATTCAG+TGG + chr5_1:23620212-23620231 Msa0724690:intron 40.0%
! GCAAGTTGAACTTTCCTATC+AGG - chr5_1:23620432-23620451 None:intergenic 40.0%
GTTCAACTTGCAAAAGAGCT+TGG + chr5_1:23620441-23620460 Msa0724690:CDS 40.0%
AACCAAGGCAAGTTGCTATA+TGG + chr5_1:23620469-23620488 Msa0724690:CDS 40.0%
AACCATATAGCAACTTGCCT+TGG - chr5_1:23620474-23620493 None:intergenic 40.0%
!!! TGTGTGTTTTGATAGGTGAC+CGG - chr5_1:23620860-23620879 None:intergenic 40.0%
TGAGGTGAATTGATTGCTTC+TGG - chr5_1:23621097-23621116 None:intergenic 40.0%
!! CACATCACTTTTAGCTGAGT+TGG - chr5_1:23621221-23621240 None:intergenic 40.0%
ATAGCCCACATTGCAATGAT+GGG + chr5_1:23621251-23621270 Msa0724690:CDS 40.0%
TGTTCCCATCATTGCAATGT+GGG - chr5_1:23621258-23621277 None:intergenic 40.0%
TTGTTCCCATCATTGCAATG+TGG - chr5_1:23621259-23621278 None:intergenic 40.0%
! GCTTGTGAGTTTTCAAAGAG+GGG - chr5_1:23619377-23619396 None:intergenic 40.0%
CTGGGAGAAATATTTAAGGG+GGG - chr5_1:23619443-23619462 None:intergenic 40.0%
GAGAGATCATACCCATTACT+GGG - chr5_1:23619461-23619480 None:intergenic 40.0%
!! GAAAGAACTTTTGGGTAGGT+TGG - chr5_1:23619662-23619681 None:intergenic 40.0%
!! TAGGGAAAGAACTTTTGGGT+AGG - chr5_1:23619666-23619685 None:intergenic 40.0%
TCCCTATAAGGCTGTTCTTA+TGG + chr5_1:23619680-23619699 Msa0724690:exon 40.0%
! GCCATAAGAACAGCCTTATA+GGG - chr5_1:23619684-23619703 None:intergenic 40.0%
! TGCCATAAGAACAGCCTTAT+AGG - chr5_1:23619685-23619704 None:intergenic 40.0%
TATAAGGCTGTTCTTATGGC+AGG + chr5_1:23619684-23619703 Msa0724690:exon 40.0%
TGAAGCCCTTGAATCTCTTT+GGG + chr5_1:23619773-23619792 Msa0724690:CDS 40.0%
GTGAACCCAAAGAGATTCAA+GGG - chr5_1:23619781-23619800 None:intergenic 40.0%
TGTGAACCCAAAGAGATTCA+AGG - chr5_1:23619782-23619801 None:intergenic 40.0%
ATCACCTTGAAAAGAAGCAG+GGG - chr5_1:23619805-23619824 None:intergenic 40.0%
GATCACCTTGAAAAGAAGCA+GGG - chr5_1:23619806-23619825 None:intergenic 40.0%
AGATCACCTTGAAAAGAAGC+AGG - chr5_1:23619807-23619826 None:intergenic 40.0%
AGAAGTGAGAAGAATTGAGG+AGG - chr5_1:23619833-23619852 None:intergenic 40.0%
! GTGTTTGATGACATGGATTC+AGG + chr5_1:23620198-23620217 Msa0724690:intron 40.0%
! GGATTCAGGTTCAAATTCAG+TGG + chr5_1:23620212-23620231 Msa0724690:intron 40.0%
! GCAAGTTGAACTTTCCTATC+AGG - chr5_1:23620432-23620451 None:intergenic 40.0%
GTTCAACTTGCAAAAGAGCT+TGG + chr5_1:23620441-23620460 Msa0724690:CDS 40.0%
AACCAAGGCAAGTTGCTATA+TGG + chr5_1:23620469-23620488 Msa0724690:CDS 40.0%
AACCATATAGCAACTTGCCT+TGG - chr5_1:23620474-23620493 None:intergenic 40.0%
!!! TGTGTGTTTTGATAGGTGAC+CGG - chr5_1:23620860-23620879 None:intergenic 40.0%
TGAGGTGAATTGATTGCTTC+TGG - chr5_1:23621097-23621116 None:intergenic 40.0%
!! CACATCACTTTTAGCTGAGT+TGG - chr5_1:23621221-23621240 None:intergenic 40.0%
ATAGCCCACATTGCAATGAT+GGG + chr5_1:23621251-23621270 Msa0724690:CDS 40.0%
TGTTCCCATCATTGCAATGT+GGG - chr5_1:23621258-23621277 None:intergenic 40.0%
TTGTTCCCATCATTGCAATG+TGG - chr5_1:23621259-23621278 None:intergenic 40.0%
! AGTTTTCAAAGAGGGGCAGA+AGG - chr5_1:23619370-23619389 None:intergenic 45.0%
GGAGAGATCATACCCATTAC+TGG - chr5_1:23619462-23619481 None:intergenic 45.0%
! CAAGGGCTTCAGAAGTACAA+GGG - chr5_1:23619764-23619783 None:intergenic 45.0%
! TCAAGGGCTTCAGAAGTACA+AGG - chr5_1:23619765-23619784 None:intergenic 45.0%
CTGAAGCCCTTGAATCTCTT+TGG + chr5_1:23619772-23619791 Msa0724690:CDS 45.0%
GAAGCATGCTACCATCAACA+AGG + chr5_1:23620333-23620352 Msa0724690:CDS 45.0%
!! AAGAGCTTGGTTTGCAACCA+AGG + chr5_1:23620454-23620473 Msa0724690:CDS 45.0%
! TGAACCTTGCCCTTCTGTTT+TGG - chr5_1:23620497-23620516 None:intergenic 45.0%
GATAGCCCACATTGCAATGA+TGG + chr5_1:23621250-23621269 Msa0724690:CDS 45.0%
CAGTAGAGTTACATCTGCAG+TGG - chr5_1:23621515-23621534 None:intergenic 45.0%
CACTGCAGATGTAACTCTAC+TGG + chr5_1:23621513-23621532 Msa0724690:three_prime_UTR 45.0%
! AGTTTTCAAAGAGGGGCAGA+AGG - chr5_1:23619370-23619389 None:intergenic 45.0%
GGAGAGATCATACCCATTAC+TGG - chr5_1:23619462-23619481 None:intergenic 45.0%
! CAAGGGCTTCAGAAGTACAA+GGG - chr5_1:23619764-23619783 None:intergenic 45.0%
! TCAAGGGCTTCAGAAGTACA+AGG - chr5_1:23619765-23619784 None:intergenic 45.0%
CTGAAGCCCTTGAATCTCTT+TGG + chr5_1:23619772-23619791 Msa0724690:CDS 45.0%
GAAGCATGCTACCATCAACA+AGG + chr5_1:23620333-23620352 Msa0724690:CDS 45.0%
!! AAGAGCTTGGTTTGCAACCA+AGG + chr5_1:23620454-23620473 Msa0724690:CDS 45.0%
! TGAACCTTGCCCTTCTGTTT+TGG - chr5_1:23620497-23620516 None:intergenic 45.0%
GATAGCCCACATTGCAATGA+TGG + chr5_1:23621250-23621269 Msa0724690:CDS 45.0%
CAGTAGAGTTACATCTGCAG+TGG - chr5_1:23621515-23621534 None:intergenic 45.0%
CACTGCAGATGTAACTCTAC+TGG + chr5_1:23621513-23621532 Msa0724690:three_prime_UTR 45.0%
! TGTGGTGGGGAACTTTGATG+TGG - chr5_1:23619248-23619267 None:intergenic 50.0%
AGAGAGAAGAGGGTAGACAG+GGG - chr5_1:23619345-23619364 None:intergenic 50.0%
CAGAGAGAAGAGGGTAGACA+GGG - chr5_1:23619346-23619365 None:intergenic 50.0%
TCAGAGAGAAGAGGGTAGAC+AGG - chr5_1:23619347-23619366 None:intergenic 50.0%
GCAGAAGGTCAGAGAGAAGA+GGG - chr5_1:23619355-23619374 None:intergenic 50.0%
ATGTGGGAATTGTGGGAGTG+AGG - chr5_1:23619483-23619502 None:intergenic 50.0%
! GACGAAAGAAGCAGGTGTTG+AGG - chr5_1:23619515-23619534 None:intergenic 50.0%
!! GGTAGGTTGGTATGTGTGTG+TGG - chr5_1:23619649-23619668 None:intergenic 50.0%
AAGGCTGTTCTTATGGCAGG+TGG + chr5_1:23619687-23619706 Msa0724690:exon 50.0%
! ATGGCAGGTGGCAAGCTTTT+TGG + chr5_1:23619699-23619718 Msa0724690:CDS 50.0%
! CACACCCCTGCTTCTTTTCA+AGG + chr5_1:23619798-23619817 Msa0724690:CDS 50.0%
GGTTCCAAAACAGAAGGGCA+AGG + chr5_1:23620490-23620509 Msa0724690:CDS 50.0%
! GTGGTGGGGAACTTTGATGT+GGG - chr5_1:23619247-23619266 None:intergenic 50.0%
! TGTGGTGGGGAACTTTGATG+TGG - chr5_1:23619248-23619267 None:intergenic 50.0%
AGAGAGAAGAGGGTAGACAG+GGG - chr5_1:23619345-23619364 None:intergenic 50.0%
CAGAGAGAAGAGGGTAGACA+GGG - chr5_1:23619346-23619365 None:intergenic 50.0%
TCAGAGAGAAGAGGGTAGAC+AGG - chr5_1:23619347-23619366 None:intergenic 50.0%
GCAGAAGGTCAGAGAGAAGA+GGG - chr5_1:23619355-23619374 None:intergenic 50.0%
ATGTGGGAATTGTGGGAGTG+AGG - chr5_1:23619483-23619502 None:intergenic 50.0%
! GACGAAAGAAGCAGGTGTTG+AGG - chr5_1:23619515-23619534 None:intergenic 50.0%
!! GGTAGGTTGGTATGTGTGTG+TGG - chr5_1:23619649-23619668 None:intergenic 50.0%
AAGGCTGTTCTTATGGCAGG+TGG + chr5_1:23619687-23619706 Msa0724690:exon 50.0%
! ATGGCAGGTGGCAAGCTTTT+TGG + chr5_1:23619699-23619718 Msa0724690:CDS 50.0%
! CACACCCCTGCTTCTTTTCA+AGG + chr5_1:23619798-23619817 Msa0724690:CDS 50.0%
GGTTCCAAAACAGAAGGGCA+AGG + chr5_1:23620490-23620509 Msa0724690:CDS 50.0%
GGTTGGGGAGAGTTGAGAGT+TGG - chr5_1:23619323-23619342 None:intergenic 55.0%
AAGAGGGTAGACAGGGGGTT+GGG - chr5_1:23619339-23619358 None:intergenic 55.0%
GAGAGAAGAGGGTAGACAGG+GGG - chr5_1:23619344-23619363 None:intergenic 55.0%
GGCAGAAGGTCAGAGAGAAG+AGG - chr5_1:23619356-23619375 None:intergenic 55.0%
! GCAGGTGGCAAGCTTTTTGG+TGG + chr5_1:23619702-23619721 Msa0724690:CDS 55.0%
!! TGGTGGTGGAAGCAACAGAG+TGG + chr5_1:23620248-23620267 Msa0724690:CDS 55.0%
CATTCCGAGAGTCAGCACAC+CGG + chr5_1:23620838-23620857 Msa0724690:intron 55.0%
GGTTGGGGAGAGTTGAGAGT+TGG - chr5_1:23619323-23619342 None:intergenic 55.0%
AAGAGGGTAGACAGGGGGTT+GGG - chr5_1:23619339-23619358 None:intergenic 55.0%
GAGAGAAGAGGGTAGACAGG+GGG - chr5_1:23619344-23619363 None:intergenic 55.0%
GGCAGAAGGTCAGAGAGAAG+AGG - chr5_1:23619356-23619375 None:intergenic 55.0%
! GCAGGTGGCAAGCTTTTTGG+TGG + chr5_1:23619702-23619721 Msa0724690:CDS 55.0%
!! TGGTGGTGGAAGCAACAGAG+TGG + chr5_1:23620248-23620267 Msa0724690:CDS 55.0%
CATTCCGAGAGTCAGCACAC+CGG + chr5_1:23620838-23620857 Msa0724690:intron 55.0%
AGAGGGTAGACAGGGGGTTG+GGG - chr5_1:23619338-23619357 None:intergenic 60.0%
GAAGAGGGTAGACAGGGGGT+TGG - chr5_1:23619340-23619359 None:intergenic 60.0%
!! GTGACCGGTGTGCTGACTCT+CGG - chr5_1:23620845-23620864 None:intergenic 60.0%
AGAGGGTAGACAGGGGGTTG+GGG - chr5_1:23619338-23619357 None:intergenic 60.0%
GAAGAGGGTAGACAGGGGGT+TGG - chr5_1:23619340-23619359 None:intergenic 60.0%
!! GTGACCGGTGTGCTGACTCT+CGG - chr5_1:23620845-23620864 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 23619245 23621688 23619245 ID=Msa0724690;Name=Msa0724690
chr5_1 mRNA 23619245 23621688 23619245 ID=Msa0724690-mRNA-1;Parent=Msa0724690;Name=Msa0724690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=454|1|1|1|1|1|3|187|333
chr5_1 exon 23619245 23619819 23619245 ID=Msa0724690-mRNA-1:exon:8741;Parent=Msa0724690-mRNA-1
chr5_1 exon 23620220 23620623 23620220 ID=Msa0724690-mRNA-1:exon:8742;Parent=Msa0724690-mRNA-1
chr5_1 exon 23621025 23621688 23621025 ID=Msa0724690-mRNA-1:exon:8743;Parent=Msa0724690-mRNA-1
chr5_1 five_prime_UTR 23619245 23619698 23619245 ID=Msa0724690-mRNA-1:five_prime_utr;Parent=Msa0724690-mRNA-1
chr5_1 CDS 23619699 23619819 23619699 ID=Msa0724690-mRNA-1:cds;Parent=Msa0724690-mRNA-1
chr5_1 CDS 23620220 23620623 23620220 ID=Msa0724690-mRNA-1:cds;Parent=Msa0724690-mRNA-1
chr5_1 CDS 23621025 23621501 23621025 ID=Msa0724690-mRNA-1:cds;Parent=Msa0724690-mRNA-1
chr5_1 three_prime_UTR 23621502 23621688 23621502 ID=Msa0724690-mRNA-1:three_prime_utr;Parent=Msa0724690-mRNA-1
Gene Sequence

>Msa0724690

ATGGCAGGTGGCAAGCTTTTTGGTGGTTCTAATATGTCACTTTTGCTTCAAAATGAAAGACTCCCTTGTACTTCTGAAGCCCTTGAATCTCTTTGGGTTCACACCCCTGCTTCTTTTCAAGGTTCAAATTCAGTGGTTAATTTTGAGAATGGTGGTGGAAGCAACAGAGTGGTAACAGATAGACCCTTCTTTCAACAACTTGAGAAAGAAGAGAATTGTGGTGATGAAGATTATGAAGCATGCTACCATCAACAAGGAAAGAAAAGAAGGCTTTCAAGTGAACAAGTTCAATTTCTTGAAAAGAGTTTTGAGGTAGAAAACAAGCTTGAACCTGATAGGAAAGTTCAACTTGCAAAAGAGCTTGGTTTGCAACCAAGGCAAGTTGCTATATGGTTCCAAAACAGAAGGGCAAGGTTCAAAACTAAACAGCTTGAAAAAGATTATGGCACATTGAAAGCAAGCTTTGATAGTCTCAAACATGATTATGATAATCTTCTTCAAGAGAATGACAAGTTAAAAGAAGAGGTGAATTCTCTCAAGAACAAATTGATCCCAAGAGATAAAGAGAAAGAGAATTCAGAAGACAAATCATCACCAGAAGCAATCAATTCACCTCATAACAACAAAGATCCAATGGATATAACCTCAATTACAAATTCAGAAAATGGGTCCAAAGTGTCACTCCATAATATGGTACTAAAATGTAAGCAAGAAGATGCCAACTCAGCTAAAAGTGATGTGCTTGATTCTGATAGCCCACATTGCAATGATGGGAACAATCTTTCTTCTTTCATAGAGCCTACAGATTCTTCACATGCTTTTGAACCTGATCATTCAGATTTCTCACAAGATGAAGAGGATAATGATAACTTGAGTCATAATCTTTTGACTCTTCCTTGCTTACCAAAAGTTGAAGATGTTTGCTATGATGACCCACATGAAAATTCTTGTAATTTTGGGTTCCCTGTTGAAGATCAAACCTTTTGTTTCTGGCCTTATTGA
Protein sequence

>Msa0724690

MAGGKLFGGSNMSLLLQNERLPCTSEALESLWVHTPASFQGSNSVVNFENGGGSNRVVTDRPFFQQLEKEENCGDEDYEACYHQQGKKRRLSSEQVQFLEKSFEVENKLEPDRKVQLAKELGLQPRQVAIWFQNRRARFKTKQLEKDYGTLKASFDSLKHDYDNLLQENDKLKEEVNSLKNKLIPRDKEKENSEDKSSPEAINSPHNNKDPMDITSITNSENGSKVSLHNMVLKCKQEDANSAKSDVLDSDSPHCNDGNNLSSFIEPTDSSHAFEPDHSDFSQDEEDNDNLSHNLLTLPCLPKVEDVCYDDPHENSCNFGFPVEDQTFCFWPY*