AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725320

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725320 MtrunA17_Chr5g0417001 92.020 401 20 3 1 399 1 391 0.0 738
Msa0725320 MtrunA17_Chr8g0361731 63.232 427 97 14 1 399 1 395 1.09e-172 488
Msa0725320 MtrunA17_Chr6g0453131 48.028 431 152 15 1 399 1 391 2.35e-116 344
Msa0725320 MtrunA17_Chr5g0442771 65.896 173 55 3 6 175 10 181 5.67e-78 243
Msa0725320 MtrunA17_Chr2g0311651 58.049 205 71 5 6 197 16 218 1.72e-75 237
Msa0725320 MtrunA17_Chr2g0311661 61.453 179 55 4 11 179 18 192 2.88e-73 230
Msa0725320 MtrunA17_Chr4g0047841 50.838 179 71 2 14 176 15 192 2.76e-61 201
Msa0725320 MtrunA17_Chr2g0318101 52.381 168 67 2 16 175 17 179 2.26e-60 199
Msa0725320 MtrunA17_Chr7g0252971 47.393 211 91 4 16 219 10 207 1.19e-59 197
Msa0725320 MtrunA17_Chr4g0076731 54.321 162 63 3 12 173 52 202 1.67e-59 199
Msa0725320 MtrunA17_Chr2g0326361 52.326 172 78 2 1 172 1 168 3.84e-59 195
Msa0725320 MtrunA17_Chr3g0124761 48.705 193 79 4 16 200 9 189 1.73e-58 192
Msa0725320 MtrunA17_Chr5g0417791 39.695 262 140 8 16 269 5 256 8.01e-58 189
Msa0725320 MtrunA17_Chr8g0384721 53.503 157 66 2 16 172 9 158 4.50e-56 186
Msa0725320 MtrunA17_Chr2g0318081 52.486 181 75 5 16 196 18 187 7.83e-56 187
Msa0725320 MtrunA17_Chr7g0263931 52.500 160 72 2 16 175 13 168 9.63e-55 184
Msa0725320 MtrunA17_Chr4g0042561 54.037 161 64 3 16 174 11 163 1.48e-54 181
Msa0725320 MtrunA17_Chr4g0018391 48.837 172 73 3 14 182 7 166 5.70e-54 182
Msa0725320 MtrunA17_Chr3g0130731 52.229 157 67 2 16 172 9 157 1.60e-53 179
Msa0725320 MtrunA17_Chr8g0359921 53.012 166 69 4 16 181 16 172 2.80e-53 180
Msa0725320 MtrunA17_Chr8g0372121 42.784 194 96 3 10 200 2 183 6.18e-53 178
Msa0725320 MtrunA17_Chr5g0398971 47.701 174 78 3 14 184 7 170 2.02e-52 178
Msa0725320 MtrunA17_Chr5g0405211 45.699 186 84 5 8 188 2 175 2.59e-52 178
Msa0725320 MtrunA17_Chr3g0091921 50.000 182 81 4 8 189 10 181 1.36e-51 174
Msa0725320 MtrunA17_Chr4g0060931 48.588 177 77 4 8 182 13 177 1.67e-51 176
Msa0725320 MtrunA17_Chr2g0309891 51.875 160 66 4 16 173 8 158 1.80e-51 176
Msa0725320 MtrunA17_Chr4g0056541 46.746 169 75 3 14 179 7 163 5.03e-51 175
Msa0725320 MtrunA17_Chr6g0453451 52.830 159 67 3 16 174 22 172 6.17e-50 171
Msa0725320 MtrunA17_Chr1g0200561 42.784 194 95 4 1 191 6 186 2.21e-49 170
Msa0725320 MtrunA17_Chr6g0481091 49.057 159 69 3 16 172 8 156 3.53e-49 166
Msa0725320 MtrunA17_Chr4g0038751 45.977 174 77 3 11 180 12 172 3.90e-49 168
Msa0725320 MtrunA17_Chr2g0316971 47.879 165 80 2 11 175 20 178 4.56e-49 170
Msa0725320 MtrunA17_Chr4g0017921 48.780 164 68 3 14 174 8 158 2.30e-48 167
Msa0725320 MtrunA17_Chr6g0461661 46.111 180 85 4 9 184 11 182 2.88e-48 168
Msa0725320 MtrunA17_Chr6g0484441 46.154 169 79 3 10 178 1 157 3.22e-48 166
Msa0725320 MtrunA17_Chr7g0253011 46.154 182 86 4 5 182 8 181 3.32e-48 168
Msa0725320 MtrunA17_Chr3g0139331 47.727 176 77 3 1 175 1 162 4.74e-48 167
Msa0725320 MtrunA17_Chr3g0109821 44.444 189 91 6 16 202 8 184 5.30e-48 173
Msa0725320 MtrunA17_Chr7g0214071 48.045 179 79 3 1 178 1 166 2.91e-47 162
Msa0725320 MtrunA17_Chr5g0433781 46.875 160 73 3 16 173 8 157 1.29e-46 169
Msa0725320 MtrunA17_Chr2g0309331 41.270 189 95 4 13 196 9 186 2.00e-46 162
Msa0725320 MtrunA17_Chr5g0400461 47.590 166 65 5 16 172 8 160 5.06e-46 161
Msa0725320 MtrunA17_Chr1g0147421 45.714 175 81 4 1 173 15 177 5.85e-46 161
Msa0725320 MtrunA17_Chr8g0346001 45.833 168 79 4 14 174 15 177 1.57e-45 162
Msa0725320 MtrunA17_Chr4g0054791 44.444 189 93 5 16 201 8 187 1.68e-45 159
Msa0725320 MtrunA17_Chr5g0428991 48.765 162 71 4 17 176 28 179 1.94e-45 165
Msa0725320 MtrunA17_Chr1g0183741 37.615 218 114 4 16 231 12 209 6.38e-45 156
Msa0725320 MtrunA17_Chr3g0128151 46.341 164 76 4 17 178 25 178 1.84e-44 162
Msa0725320 MtrunA17_Chr7g0217721 47.904 167 74 5 17 174 22 184 5.71e-44 156
Msa0725320 MtrunA17_Chr1g0201021 46.584 161 74 3 15 173 20 170 6.74e-44 160
Msa0725320 MtrunA17_Chr2g0312321 44.509 173 85 4 10 182 7 168 1.18e-43 154
Msa0725320 MtrunA17_Chr3g0130101 44.785 163 78 4 12 172 5 157 1.89e-43 155
Msa0725320 MtrunA17_Chr3g0144271 51.748 143 67 2 3 143 11 153 3.26e-43 155
Msa0725320 MtrunA17_Chr3g0128111 42.683 164 82 4 17 178 45 198 4.94e-43 150
Msa0725320 MtrunA17_Chr8g0364791 40.462 173 91 4 14 184 6 168 9.39e-43 155
Msa0725320 MtrunA17_Chr7g0217711 51.562 128 60 1 17 144 22 147 4.76e-42 145
Msa0725320 MtrunA17_Chr7g0261411 42.581 155 77 1 16 170 12 154 2.92e-41 147
Msa0725320 MtrunA17_Chr8g0384201 41.615 161 82 3 14 172 6 156 6.97e-41 150
Msa0725320 MtrunA17_Chr1g0197351 43.275 171 75 4 14 174 42 200 2.54e-40 149
Msa0725320 MtrunA17_Chr1g0197361 44.172 163 77 5 16 175 10 161 3.07e-40 150
Msa0725320 MtrunA17_Chr8g0385991 45.455 154 79 2 16 169 16 164 1.66e-39 140
Msa0725320 MtrunA17_Chr3g0092671 44.785 163 76 6 16 175 7 158 4.91e-39 146
Msa0725320 MtrunA17_Chr3g0131911 43.114 167 89 3 16 180 16 178 1.97e-36 133
Msa0725320 MtrunA17_Chr8g0345671 45.865 133 68 3 17 146 14 145 9.71e-34 129
Msa0725320 MtrunA17_Chr4g0026141 44.118 136 70 3 10 140 1 135 1.62e-33 125
Msa0725320 MtrunA17_Chr2g0321631 46.617 133 60 5 16 140 6 135 1.18e-32 123
Msa0725320 MtrunA17_Chr7g0266701 36.585 164 94 5 16 173 6 165 1.83e-32 123
Msa0725320 MtrunA17_Chr8g0345691 46.269 134 67 4 10 140 9 140 3.32e-32 125
Msa0725320 MtrunA17_Chr4g0050701 36.943 157 89 2 16 172 13 159 2.03e-29 112
Msa0725320 MtrunA17_Chr8g0345711 40.945 127 71 3 17 140 15 140 7.16e-28 108
Msa0725320 MtrunA17_Chr3g0113001 44.355 124 62 3 59 182 10 126 7.34e-28 111
Msa0725320 MtrunA17_Chr2g0321741 37.013 154 75 5 34 182 12 148 4.96e-26 107
Msa0725320 MtrunA17_Chr8g0345731 42.424 132 70 5 15 140 24 155 1.07e-25 102
Msa0725320 MtrunA17_Chr8g0345721 33.951 162 74 3 17 146 38 198 1.45e-23 97.4
Msa0725320 MtrunA17_Chr8g0345741 40.336 119 67 3 25 140 2 119 8.11e-23 94.0
Msa0725320 MtrunA17_Chr8g0384351 33.533 167 81 6 16 182 12 148 1.36e-19 85.9
Msa0725320 MtrunA17_Chr3g0113031 44.898 98 48 3 77 174 3 94 2.17e-19 87.4
Msa0725320 MtrunA17_Chr7g0243371 46.753 77 41 0 67 143 17 93 2.63e-19 83.2
Msa0725320 MtrunA17_Chr8g0345701 35.461 141 71 5 17 140 10 147 4.23e-19 84.3
Msa0725320 MtrunA17_Chr7g0251651 33.333 138 85 5 11 145 14 147 9.14e-18 80.9
Msa0725320 MtrunA17_Chr7g0251671 31.111 135 85 5 17 148 13 142 2.00e-17 79.3
Msa0725320 MtrunA17_Chr7g0251661 33.094 139 86 5 12 147 7 141 2.64e-17 78.6
Msa0725320 MtrunA17_Chr3g0130321 30.864 162 96 6 16 171 9 160 3.52e-15 73.9
Msa0725320 MtrunA17_Chr1g0194791 59.574 47 18 1 16 61 48 94 4.63e-13 65.1
Msa0725320 MtrunA17_Chr7g0274971 28.488 172 102 7 20 183 11 169 4.79e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725320 AT1G26870.1 55.657 327 122 8 2 313 3 321 2.68e-111 332
Msa0725320 AT5G39820.1 67.337 199 51 3 2 186 8 206 7.31e-98 295
Msa0725320 AT2G43000.1 63.218 174 53 3 6 179 10 172 1.04e-75 236
Msa0725320 AT3G12910.1 45.703 256 129 5 6 254 13 265 5.16e-66 213
Msa0725320 AT2G02450.2 55.000 160 61 3 13 172 50 198 8.73e-60 199
Msa0725320 AT2G02450.1 55.000 160 61 3 13 172 50 198 9.46e-60 199
Msa0725320 AT3G04070.2 53.614 166 69 3 16 176 12 174 1.40e-58 194
Msa0725320 AT3G15510.1 52.695 167 66 2 18 176 21 182 1.73e-58 195
Msa0725320 AT1G61110.1 53.179 173 73 3 16 181 18 189 6.41e-57 189
Msa0725320 AT3G04070.1 48.901 182 69 3 16 176 12 190 4.30e-56 188
Msa0725320 AT1G01720.1 51.497 167 74 2 14 180 7 166 8.35e-56 186
Msa0725320 AT1G69490.1 52.174 161 71 3 16 176 11 165 3.18e-55 183
Msa0725320 AT4G27410.2 49.171 181 80 4 16 196 16 184 1.47e-54 182
Msa0725320 AT1G77450.1 51.829 164 71 2 16 179 12 167 1.63e-54 181
Msa0725320 AT1G52890.1 42.739 241 119 6 16 256 16 237 2.80e-54 182
Msa0725320 AT1G76420.1 40.000 255 132 4 2 249 15 255 3.68e-54 182
Msa0725320 AT3G15500.1 53.939 165 66 4 16 180 16 170 5.41e-54 182
Msa0725320 AT5G08790.1 52.727 165 71 3 12 175 4 162 9.47e-54 180
Msa0725320 AT5G63790.1 47.619 189 86 4 12 199 47 223 1.06e-53 181
Msa0725320 AT5G63790.2 47.619 189 86 4 12 199 57 233 1.13e-53 181
Msa0725320 AT4G36160.1 48.315 178 77 4 14 188 10 175 1.28e-53 182
Msa0725320 AT4G36160.3 48.315 178 77 4 14 188 10 175 1.28e-53 182
Msa0725320 AT4G36160.2 48.315 178 77 4 14 188 14 179 1.38e-53 182
Msa0725320 AT1G52880.1 55.952 168 64 3 18 179 21 184 1.83e-53 180
Msa0725320 AT5G07680.1 44.493 227 106 6 4 220 9 225 5.25e-53 179
Msa0725320 AT2G18060.3 47.753 178 77 5 14 188 9 173 2.54e-52 179
Msa0725320 AT2G18060.1 47.753 178 77 5 14 188 9 173 2.54e-52 179
Msa0725320 AT5G39610.1 48.913 184 80 4 1 182 9 180 4.15e-52 176
Msa0725320 AT5G07680.2 45.581 215 99 5 16 220 5 211 5.36e-52 176
Msa0725320 AT5G61430.1 34.936 312 153 8 4 293 8 291 7.28e-52 177
Msa0725320 AT5G62380.2 44.330 194 92 5 14 204 7 187 1.88e-51 176
Msa0725320 AT5G62380.1 44.330 194 92 5 14 204 7 187 1.88e-51 176
Msa0725320 AT1G12260.2 47.337 169 74 3 14 179 7 163 3.54e-51 175
Msa0725320 AT2G17040.1 49.133 173 71 4 12 180 4 163 4.31e-51 173
Msa0725320 AT1G12260.1 47.337 169 74 3 14 179 7 163 4.47e-51 176
Msa0725320 AT4G10350.1 50.610 164 68 3 14 174 9 162 8.03e-51 174
Msa0725320 AT2G24430.2 46.784 171 82 1 8 178 10 171 9.21e-51 173
Msa0725320 AT2G24430.1 46.784 171 82 1 8 178 10 171 9.21e-51 173
Msa0725320 AT3G18400.1 49.123 171 75 4 10 180 1 159 1.38e-50 172
Msa0725320 AT4G27410.3 44.949 198 80 5 16 196 16 201 2.34e-50 172
Msa0725320 AT3G17730.1 50.932 161 63 4 16 172 8 156 3.57e-50 169
Msa0725320 AT5G18270.1 48.256 172 77 4 5 174 13 174 8.52e-50 171
Msa0725320 AT3G04060.1 48.276 174 77 4 1 172 9 171 1.32e-49 171
Msa0725320 AT1G62700.1 40.541 222 110 5 14 232 7 209 1.55e-49 172
Msa0725320 AT1G62700.2 40.541 222 110 5 14 232 7 209 1.55e-49 172
Msa0725320 AT5G18270.2 47.674 172 78 4 5 174 13 174 5.01e-49 169
Msa0725320 AT3G29035.1 50.556 180 74 6 3 179 15 182 5.12e-49 169
Msa0725320 AT3G03200.1 46.629 178 83 5 16 190 8 176 8.72e-49 172
Msa0725320 AT1G33280.1 50.000 164 66 3 14 174 8 158 1.01e-48 167
Msa0725320 AT4G17980.1 47.799 159 75 2 16 172 8 160 1.25e-48 166
Msa0725320 AT4G17980.2 46.914 162 78 2 13 172 5 160 1.51e-48 167
Msa0725320 AT5G66300.1 48.555 173 73 5 14 181 12 173 2.59e-48 166
Msa0725320 AT1G65910.1 48.750 160 70 3 16 173 8 157 5.22e-48 173
Msa0725320 AT5G53950.1 47.368 171 84 1 12 182 15 179 6.38e-48 167
Msa0725320 AT1G71930.2 40.367 218 111 7 16 229 11 213 7.91e-48 166
Msa0725320 AT1G71930.1 40.367 218 111 7 16 229 11 213 7.91e-48 166
Msa0725320 AT5G17260.1 48.125 160 70 4 16 172 8 157 3.42e-47 168
Msa0725320 AT2G46770.1 45.029 171 80 4 14 174 16 182 5.46e-47 165
Msa0725320 AT3G15170.1 47.337 169 82 3 11 178 16 178 8.95e-47 162
Msa0725320 AT5G13180.1 48.125 160 71 2 16 175 16 163 1.20e-46 160
Msa0725320 AT3G10500.1 47.561 164 74 4 14 175 9 162 1.19e-45 165
Msa0725320 AT3G61910.1 44.565 184 91 6 14 189 11 191 1.28e-45 160
Msa0725320 AT1G54330.1 46.988 166 73 4 16 179 8 160 2.63e-45 158
Msa0725320 AT3G12977.1 44.633 177 87 4 3 177 5 172 3.07e-45 157
Msa0725320 AT4G35580.3 49.367 158 68 4 17 172 12 159 3.69e-45 164
Msa0725320 AT4G35580.2 49.367 158 68 4 17 172 12 159 3.94e-45 163
Msa0725320 AT4G35580.1 49.367 158 68 4 17 172 12 159 4.82e-45 163
Msa0725320 AT1G33060.2 46.012 163 76 3 12 172 22 174 7.48e-45 164
Msa0725320 AT3G10490.1 45.238 168 71 4 14 174 27 180 7.75e-45 155
Msa0725320 AT1G33060.1 46.012 163 76 3 12 172 22 174 7.94e-45 164
Msa0725320 AT1G79580.3 45.122 164 75 3 14 174 17 168 1.08e-44 159
Msa0725320 AT1G79580.5 45.122 164 75 3 14 174 17 168 1.08e-44 159
Msa0725320 AT1G79580.4 45.122 164 75 3 14 174 17 168 1.08e-44 159
Msa0725320 AT1G79580.2 45.122 164 75 3 14 174 17 168 1.08e-44 159
Msa0725320 AT1G79580.1 45.122 164 75 3 14 174 17 168 1.08e-44 159
Msa0725320 AT5G46590.2 54.688 128 55 2 16 141 8 134 1.15e-44 156
Msa0725320 AT3G10480.1 45.455 165 75 4 14 174 27 180 1.58e-44 160
Msa0725320 AT5G46590.1 54.688 128 55 2 16 141 8 134 1.68e-44 156
Msa0725320 AT3G10480.2 44.444 171 67 4 14 174 27 179 1.83e-44 160
Msa0725320 AT1G56010.2 48.750 160 70 5 16 172 21 171 2.51e-44 156
Msa0725320 AT1G32770.1 44.253 174 74 5 14 174 16 179 3.65e-44 157
Msa0725320 AT1G34180.3 43.243 185 86 4 16 191 18 192 5.45e-44 159
Msa0725320 AT5G24590.2 45.977 174 82 4 4 174 2 166 6.05e-44 159
Msa0725320 AT3G10490.2 45.238 168 71 4 14 174 27 180 1.39e-43 157
Msa0725320 AT5G04410.1 45.122 164 78 3 14 175 9 162 1.83e-43 159
Msa0725320 AT1G34180.1 43.243 185 86 4 16 191 18 192 4.11e-43 158
Msa0725320 AT1G32510.1 42.442 172 85 3 16 180 8 172 3.11e-42 150
Msa0725320 AT1G34190.1 46.296 162 75 3 16 175 18 169 3.25e-42 156
Msa0725320 AT3G49530.2 44.304 158 77 3 17 172 16 164 3.60e-42 153
Msa0725320 AT1G34180.4 40.299 201 89 4 16 195 18 208 7.48e-42 153
Msa0725320 AT3G49530.1 44.720 161 77 4 15 172 13 164 9.90e-42 153
Msa0725320 AT1G34180.2 40.609 197 86 4 16 191 18 204 4.50e-41 153
Msa0725320 AT2G33480.1 44.382 178 85 5 1 177 1 165 8.15e-41 145
Msa0725320 AT5G09330.5 42.236 161 81 3 14 172 6 156 8.60e-41 151
Msa0725320 AT5G09330.2 42.236 161 81 3 14 172 6 156 8.60e-41 151
Msa0725320 AT5G09330.4 42.236 161 81 3 14 172 6 156 8.60e-41 151
Msa0725320 AT5G09330.3 42.236 161 81 3 14 172 6 156 8.60e-41 151
Msa0725320 AT5G09330.1 42.236 161 81 3 14 172 6 156 8.60e-41 151
Msa0725320 AT2G33480.2 44.382 178 83 5 1 177 1 163 1.10e-40 145
Msa0725320 AT4G28530.1 40.449 178 78 3 16 177 12 177 5.14e-40 146
Msa0725320 AT5G22290.1 41.520 171 80 5 14 180 21 175 9.84e-39 142
Msa0725320 AT3G10480.3 38.384 198 74 5 14 174 27 213 2.03e-38 145
Msa0725320 AT5G64060.1 39.752 161 85 4 14 172 6 156 7.75e-38 140
Msa0725320 AT3G44290.2 46.825 126 64 2 15 139 15 138 1.12e-36 134
Msa0725320 AT2G27300.1 44.531 128 68 2 13 139 13 138 1.29e-36 136
Msa0725320 AT3G44290.1 46.825 126 64 2 15 139 15 138 3.12e-36 135
Msa0725320 AT2G43000.2 61.538 104 29 3 76 179 2 94 6.68e-35 128
Msa0725320 AT5G04395.1 42.143 140 67 2 16 141 30 169 2.14e-33 124
Msa0725320 AT5G61430.2 33.071 254 122 7 62 293 1 228 5.64e-33 125
Msa0725320 AT1G32870.2 42.771 166 79 5 14 175 10 163 1.36e-31 126
Msa0725320 AT5G22380.1 34.199 231 130 11 11 234 3 218 1.43e-31 120
Msa0725320 AT1G32870.1 42.771 166 79 5 14 175 10 163 1.45e-31 126
Msa0725320 AT1G32870.3 42.771 166 79 5 14 175 46 199 2.84e-31 125
Msa0725320 AT5G64530.1 37.870 169 87 3 16 178 5 161 5.41e-31 117
Msa0725320 AT4G10350.2 50.877 114 46 2 61 174 12 115 8.69e-31 119
Msa0725320 AT3G12977.2 48.696 115 50 3 63 177 14 119 3.39e-30 116
Msa0725320 AT5G64530.2 44.882 127 58 2 16 142 5 119 7.79e-30 113
Msa0725320 AT3G44350.2 31.858 226 127 7 10 219 1 215 8.50e-30 115
Msa0725320 AT1G56010.1 48.649 111 50 3 62 172 1 104 1.90e-28 112
Msa0725320 AT3G44350.1 39.130 138 74 4 10 140 1 135 3.90e-28 108
Msa0725320 AT4G01550.1 41.791 134 74 3 15 144 5 138 1.92e-27 113
Msa0725320 AT4G01520.1 39.161 143 80 5 17 154 7 147 3.42e-25 104
Msa0725320 AT4G01540.3 39.310 145 81 5 15 154 5 147 7.06e-25 105
Msa0725320 AT4G01540.4 39.310 145 81 5 15 154 5 147 9.65e-25 105
Msa0725320 AT4G01540.2 39.310 145 81 5 15 154 5 147 1.36e-24 105
Msa0725320 AT4G01540.1 39.310 145 81 5 15 154 5 147 1.39e-24 105
Msa0725320 AT2G33480.3 42.342 111 54 3 67 177 8 108 1.05e-21 92.8
Msa0725320 AT2G18060.2 49.485 97 36 4 92 188 2 85 1.31e-21 94.4
Msa0725320 AT4G28530.2 39.683 126 60 2 16 125 12 137 2.05e-21 94.4
Msa0725320 AT1G02230.1 39.098 133 73 4 17 144 6 135 8.09e-21 93.2
Msa0725320 AT1G02250.1 41.406 128 67 4 17 139 6 130 1.68e-20 92.4
Msa0725320 AT3G04420.2 39.370 127 71 3 17 139 6 130 2.07e-20 90.9
Msa0725320 AT3G04420.1 39.370 127 71 3 17 139 6 130 7.19e-20 90.5
Msa0725320 AT1G01010.1 40.441 136 65 7 17 140 6 137 6.75e-18 85.5
Msa0725320 AT1G02220.1 39.370 127 68 4 17 139 6 127 1.09e-16 81.6
Msa0725320 AT5G14000.2 33.071 127 79 3 17 141 18 140 2.03e-15 73.6
Msa0725320 AT5G14000.1 27.273 165 103 4 17 179 18 167 2.78e-15 74.7
Msa0725320 AT5G50820.1 36.090 133 69 6 16 143 19 140 3.41e-15 73.9
Msa0725320 AT3G56530.1 32.090 134 86 3 16 146 54 185 4.86e-14 72.8
Msa0725320 AT3G04430.1 34.586 133 73 5 20 140 6 136 4.28e-13 68.2
Msa0725320 AT3G10490.4 37.634 93 39 3 87 174 2 80 5.95e-13 70.1
Msa0725320 AT3G10490.3 37.634 93 39 3 87 174 2 80 5.95e-13 70.1
Msa0725320 AT5G22290.2 39.560 91 36 4 93 180 2 76 1.43e-11 64.7

Find 80 sgRNAs with CRISPR-Local

Find 254 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGACTAATAATTGATTTATA+AGG 0.182896 5_1:-24973416 None:intergenic
ACATGTTGTTTGAACAAAAT+TGG 0.184460 5_1:-24973313 None:intergenic
GAAACAGTGCAAGGCCTAAT+AGG 0.247551 5_1:+24972337 Msa0725320:CDS
TGAAACATCCATTGTAGATT+TGG 0.251668 5_1:-24973555 None:intergenic
TTTGTTGAATCTTTCTCTTT+AGG 0.261897 5_1:-24971743 None:intergenic
GGGTAACTGGAGCTGGATTC+TGG 0.266844 5_1:+24972358 Msa0725320:CDS
CCAATGCATTATTATCATAT+TGG 0.276292 5_1:-24973712 None:intergenic
GACTAATAATTGATTTATAA+GGG 0.276620 5_1:-24973415 None:intergenic
AAGTTATCTTACCAGGGTTT+AGG 0.305652 5_1:+24971685 Msa0725320:CDS
ATTAAGATCTTCATTTGAAA+TGG 0.325180 5_1:-24973468 None:intergenic
CATGGAAGTCAAATTTGCTT+TGG 0.326417 5_1:+24973813 Msa0725320:CDS
TTTCTTTAGGCCAATGCATT+TGG 0.331934 5_1:-24972424 None:intergenic
GAATTGATGAATTTCAATAT+TGG 0.333275 5_1:+24973785 Msa0725320:CDS
ATTAGTCCATTACTACATAA+AGG 0.361963 5_1:+24973431 Msa0725320:CDS
GCAAGGCCTAATAGGGTAAC+TGG 0.368447 5_1:+24972345 Msa0725320:CDS
ACATTCACATCAACATTATA+AGG 0.382628 5_1:-24973743 None:intergenic
CAACTGATGAAGAGCTTGTT+GGG 0.385394 5_1:+24971715 Msa0725320:CDS
TAACTAGAGGGAACATCAAT+AGG 0.388427 5_1:-24973851 None:intergenic
AAAAGACTAAGGATTTCTTT+AGG 0.389485 5_1:-24972437 None:intergenic
ATGGAAGTCAAATTTGCTTT+GGG 0.392121 5_1:+24973814 Msa0725320:CDS
CATGTTGTTTGAACAAAATT+GGG 0.393384 5_1:-24973312 None:intergenic
AAAGAGCTTTATCTCACTCT+TGG 0.393802 5_1:+24973231 Msa0725320:CDS
CCAGCTCCAGTTACCCTATT+AGG 0.395888 5_1:-24972351 None:intergenic
TCTTCCTTTGTAAAAGACTA+AGG 0.405196 5_1:-24972448 None:intergenic
GAACCTTCTGAGGAGTAGAT+AGG 0.405650 5_1:-24972402 None:intergenic
TGATAATAATGCATTGGTTA+AGG 0.409165 5_1:+24973718 Msa0725320:CDS
TAGAGGTTCTTGTTTCAGAT+AGG 0.410820 5_1:-24973262 None:intergenic
CCAACTGATGAAGAGCTTGT+TGG 0.413211 5_1:+24971714 Msa0725320:CDS
CTTGATGAAGTTATCTTACC+AGG 0.416358 5_1:+24971678 Msa0725320:CDS
TTAAGATCTTCATTTGAAAT+GGG 0.432277 5_1:-24973467 None:intergenic
ATATCTATAAATATGATCCT+TGG 0.432912 5_1:+24971799 Msa0725320:CDS
ACAACTACAAATTTCATGAA+TGG 0.443610 5_1:+24973644 Msa0725320:CDS
AGTGACTACTCATTACCATT+TGG 0.444946 5_1:+24973686 Msa0725320:CDS
AAGTACTTCTTTGGTGAAAG+TGG 0.447802 5_1:-24972534 None:intergenic
AAGAGCTTTATCTCACTCTT+GGG 0.448696 5_1:+24973232 Msa0725320:CDS
AAACAGTGCAAGGCCTAATA+GGG 0.452535 5_1:+24972338 Msa0725320:CDS
GCTGGATTCTGGAAAGCTAC+AGG 0.462218 5_1:+24972369 Msa0725320:CDS
CCTAATAGGGTAACTGGAGC+TGG 0.468839 5_1:+24972351 Msa0725320:CDS
AGTGTAGAAGTGGTTGGTTA+AGG 0.469671 5_1:-24973354 None:intergenic
ACTTTCACCAAAGAAGTACT+TGG 0.472752 5_1:+24972536 Msa0725320:CDS
ACTGGATGATGCATGAGTTC+AGG 0.474694 5_1:+24972493 Msa0725320:CDS
TTTACTCACATTAGCGGGAA+TGG 0.475207 5_1:-24972565 None:intergenic
TTATCATATTGGTTACCAAA+TGG 0.477245 5_1:-24973701 None:intergenic
TATCTATAAATATGATCCTT+GGG 0.481892 5_1:+24971800 Msa0725320:CDS
AGAGGTTCTTGTTTCAGATA+GGG 0.482157 5_1:-24973261 None:intergenic
TACAAAGGAAGAGCTGCTAA+AGG 0.482478 5_1:+24972459 Msa0725320:CDS
TGTGTAGAGTTTGCAAGTAC+AGG 0.488055 5_1:+24972270 Msa0725320:intron
ACTACAAATTTCATGAATGG+TGG 0.505591 5_1:+24973647 Msa0725320:CDS
GTTAAAATCACCAAGCATTG+AGG 0.509367 5_1:-24973603 None:intergenic
GATATGGAAGAAAGAAATGA+TGG 0.515202 5_1:+24971648 None:intergenic
AATGCATTTGGAACCTTCTG+AGG 0.515220 5_1:-24972412 None:intergenic
GTCTTACTTGGAAGATCCCA+AGG 0.515800 5_1:-24971816 None:intergenic
CTACAAATTTCATGAATGGT+GGG 0.522679 5_1:+24973648 Msa0725320:CDS
CTAAAGGAATCAAAACTGAC+TGG 0.527746 5_1:+24972475 Msa0725320:CDS
ATTCAAGAAAACAAATTCTA+CGG 0.534890 5_1:+24973205 Msa0725320:CDS
GAAAGTGGATCTATGAGAGA+AGG 0.536482 5_1:-24972519 None:intergenic
CCAATATGATAATAATGCAT+TGG 0.542771 5_1:+24973712 Msa0725320:CDS
TATTATTTCCAAATCTACAA+TGG 0.548647 5_1:+24973547 Msa0725320:CDS
TCAGAAGGTTCCAAATGCAT+TGG 0.550096 5_1:+24972414 Msa0725320:CDS
TAACATCTACATCAAAGTCT+TGG 0.551480 5_1:-24973391 None:intergenic
CATTGTTGTTAGTGTAGAAG+TGG 0.554564 5_1:-24973364 None:intergenic
TGAAAGCCTTTATGTAGTAA+TGG 0.555437 5_1:-24973437 None:intergenic
CCAACAAGCTCTTCATCAGT+TGG 0.559889 5_1:-24971714 None:intergenic
TTAGTGTTAGATGTTTCAAG+TGG 0.563131 5_1:-24973518 None:intergenic
GTTGTTAGTGTAGAAGTGGT+TGG 0.570750 5_1:-24973360 None:intergenic
ATGTCATCATCCTCAATGCT+TGG 0.574915 5_1:+24973593 Msa0725320:CDS
ACTAATAATTGATTTATAAG+GGG 0.577672 5_1:-24973414 None:intergenic
CAAGTACAGGAGAGAAAGAG+TGG 0.578025 5_1:+24972283 Msa0725320:CDS
ATTTCAATATTGGTGATGCA+TGG 0.583124 5_1:+24973795 Msa0725320:CDS
AAACCTATCTACTCCTCAGA+AGG 0.590506 5_1:+24972399 Msa0725320:CDS
CTGGATTCTGGAAAGCTACA+GGG 0.596618 5_1:+24972370 Msa0725320:CDS
CTTGGTTGTTGAATAACTAG+AGG 0.600536 5_1:-24973864 None:intergenic
TTGATGAAGTTATCTTACCA+GGG 0.619974 5_1:+24971679 Msa0725320:CDS
TACAAATTAAGTGTAACACT+TGG 0.625059 5_1:-24973882 None:intergenic
TTGGTTGTTGAATAACTAGA+GGG 0.629756 5_1:-24973863 None:intergenic
GTTGGATGAAACCTAAACCC+TGG 0.635953 5_1:-24971696 None:intergenic
GAAAATACAGAAACAGTGCA+AGG 0.653407 5_1:+24972328 Msa0725320:CDS
TAAAGAGAAAGATTCAACAA+AGG 0.660097 5_1:+24971745 Msa0725320:CDS
AATTCTTGTTCATCAATACG+AGG 0.699073 5_1:-24973767 None:intergenic
TTAATGAGCTCAATAGACAG+AGG 0.715170 5_1:-24971768 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTATATATAAGTATTTATA+TGG - chr5_1:24971964-24971983 None:intergenic 10.0%
!!! ATGATTTTTTTTTTAAACTT+CGG + chr5_1:24973095-24973114 Msa0725320:intron 10.0%
!! CTTATATATAAGTATTTATA+TGG - chr5_1:24971964-24971983 None:intergenic 10.0%
!!! ATGATTTTTTTTTTAAACTT+CGG + chr5_1:24973095-24973114 Msa0725320:intron 10.0%
!! TTGAAAAAAATGCTTATAAA+GGG - chr5_1:24971882-24971901 None:intergenic 15.0%
!! TTTGAAAAAAATGCTTATAA+AGG - chr5_1:24971883-24971902 None:intergenic 15.0%
!! ATAATGATAAAATTTGGATT+AGG - chr5_1:24972592-24972611 None:intergenic 15.0%
!!! AATACCCTTATTTAATTATT+TGG - chr5_1:24972829-24972848 None:intergenic 15.0%
!!! AACATTTTTAATGATTTTGA+CGG + chr5_1:24973027-24973046 Msa0725320:intron 15.0%
!!! ACTAATAATTGATTTATAAG+GGG - chr5_1:24973417-24973436 None:intergenic 15.0%
!!! GACTAATAATTGATTTATAA+GGG - chr5_1:24973418-24973437 None:intergenic 15.0%
!! TTGAAAAAAATGCTTATAAA+GGG - chr5_1:24971882-24971901 None:intergenic 15.0%
!! TTTGAAAAAAATGCTTATAA+AGG - chr5_1:24971883-24971902 None:intergenic 15.0%
!! ATAATGATAAAATTTGGATT+AGG - chr5_1:24972592-24972611 None:intergenic 15.0%
!!! AATACCCTTATTTAATTATT+TGG - chr5_1:24972829-24972848 None:intergenic 15.0%
!!! AACATTTTTAATGATTTTGA+CGG + chr5_1:24973027-24973046 Msa0725320:intron 15.0%
!!! ACTAATAATTGATTTATAAG+GGG - chr5_1:24973417-24973436 None:intergenic 15.0%
!!! GACTAATAATTGATTTATAA+GGG - chr5_1:24973418-24973437 None:intergenic 15.0%
!! ATATCTATAAATATGATCCT+TGG + chr5_1:24971799-24971818 Msa0725320:CDS 20.0%
!! TATCTATAAATATGATCCTT+GGG + chr5_1:24971800-24971819 Msa0725320:CDS 20.0%
!!! AAGAAGATTGATAATAGTTA+AGG + chr5_1:24972033-24972052 Msa0725320:intron 20.0%
!! GCTAAGATAATGATAAAATT+TGG - chr5_1:24972598-24972617 None:intergenic 20.0%
!! TTGGCCAAATAATTAAATAA+GGG + chr5_1:24972822-24972841 Msa0725320:intron 20.0%
!!! ATTGTTGTGAATATCTTTTA+TGG + chr5_1:24973130-24973149 Msa0725320:intron 20.0%
!! ATTCAAGAAAACAAATTCTA+CGG + chr5_1:24973205-24973224 Msa0725320:CDS 20.0%
!!! GGACTAATAATTGATTTATA+AGG - chr5_1:24973419-24973438 None:intergenic 20.0%
!!! TTAAGATCTTCATTTGAAAT+GGG - chr5_1:24973470-24973489 None:intergenic 20.0%
!! ATTAAGATCTTCATTTGAAA+TGG - chr5_1:24973471-24973490 None:intergenic 20.0%
!! TATTATTTCCAAATCTACAA+TGG + chr5_1:24973547-24973566 Msa0725320:CDS 20.0%
!! GAATTGATGAATTTCAATAT+TGG + chr5_1:24973785-24973804 Msa0725320:CDS 20.0%
!! ATATCTATAAATATGATCCT+TGG + chr5_1:24971799-24971818 Msa0725320:CDS 20.0%
!! TATCTATAAATATGATCCTT+GGG + chr5_1:24971800-24971819 Msa0725320:CDS 20.0%
!!! AAGAAGATTGATAATAGTTA+AGG + chr5_1:24972033-24972052 Msa0725320:intron 20.0%
!! GCTAAGATAATGATAAAATT+TGG - chr5_1:24972598-24972617 None:intergenic 20.0%
!! TTGGCCAAATAATTAAATAA+GGG + chr5_1:24972822-24972841 Msa0725320:intron 20.0%
!!! ATTGTTGTGAATATCTTTTA+TGG + chr5_1:24973130-24973149 Msa0725320:intron 20.0%
!! ATTCAAGAAAACAAATTCTA+CGG + chr5_1:24973205-24973224 Msa0725320:CDS 20.0%
!!! GGACTAATAATTGATTTATA+AGG - chr5_1:24973419-24973438 None:intergenic 20.0%
!!! TTAAGATCTTCATTTGAAAT+GGG - chr5_1:24973470-24973489 None:intergenic 20.0%
!! ATTAAGATCTTCATTTGAAA+TGG - chr5_1:24973471-24973490 None:intergenic 20.0%
!! TATTATTTCCAAATCTACAA+TGG + chr5_1:24973547-24973566 Msa0725320:CDS 20.0%
!! GAATTGATGAATTTCAATAT+TGG + chr5_1:24973785-24973804 Msa0725320:CDS 20.0%
! TTTGTTGAATCTTTCTCTTT+AGG - chr5_1:24971746-24971765 None:intergenic 25.0%
! TAAAGAGAAAGATTCAACAA+AGG + chr5_1:24971745-24971764 Msa0725320:CDS 25.0%
!! ATTAAGTTGTTTACCTAAAG+AGG - chr5_1:24971916-24971935 None:intergenic 25.0%
! TTCTATTACAAAAGTCAAAC+TGG + chr5_1:24971988-24972007 Msa0725320:intron 25.0%
!!! TTTATTTCTATAAGTTCTCC+AGG - chr5_1:24972154-24972173 None:intergenic 25.0%
! AAAAGACTAAGGATTTCTTT+AGG - chr5_1:24972440-24972459 None:intergenic 25.0%
!!! AAATCCTTAGTCTTTTACAA+AGG + chr5_1:24972444-24972463 Msa0725320:CDS 25.0%
! ACAAGATACTTAGAATTAGA+GGG - chr5_1:24972722-24972741 None:intergenic 25.0%
! AACAAGATACTTAGAATTAG+AGG - chr5_1:24972723-24972742 None:intergenic 25.0%
! TCTATATTAATTAGAGCTAG+TGG + chr5_1:24972789-24972808 Msa0725320:intron 25.0%
! GTTGGCCAAATAATTAAATA+AGG + chr5_1:24972821-24972840 Msa0725320:intron 25.0%
! ATGAAACAGTTATAAAGAGA+TGG + chr5_1:24972920-24972939 Msa0725320:intron 25.0%
! ACATTTCAACATATCATAGT+TGG + chr5_1:24972965-24972984 Msa0725320:intron 25.0%
!!! AACTTTTAAAGACACACATA+TGG - chr5_1:24972991-24973010 None:intergenic 25.0%
!! TAACTTTTCTTTTAACATGC+AGG + chr5_1:24973160-24973179 Msa0725320:intron 25.0%
!! CATGTTGTTTGAACAAAATT+GGG - chr5_1:24973315-24973334 None:intergenic 25.0%
!! ACATGTTGTTTGAACAAAAT+TGG - chr5_1:24973316-24973335 None:intergenic 25.0%
! ATTAGTCCATTACTACATAA+AGG + chr5_1:24973431-24973450 Msa0725320:CDS 25.0%
! ACAACTACAAATTTCATGAA+TGG + chr5_1:24973644-24973663 Msa0725320:CDS 25.0%
!! TTATCATATTGGTTACCAAA+TGG - chr5_1:24973704-24973723 None:intergenic 25.0%
! CCAATGCATTATTATCATAT+TGG - chr5_1:24973715-24973734 None:intergenic 25.0%
! CCAATATGATAATAATGCAT+TGG + chr5_1:24973712-24973731 Msa0725320:CDS 25.0%
!!! TGATAATAATGCATTGGTTA+AGG + chr5_1:24973718-24973737 Msa0725320:CDS 25.0%
! ACATTCACATCAACATTATA+AGG - chr5_1:24973746-24973765 None:intergenic 25.0%
! TTTGTTGAATCTTTCTCTTT+AGG - chr5_1:24971746-24971765 None:intergenic 25.0%
! TAAAGAGAAAGATTCAACAA+AGG + chr5_1:24971745-24971764 Msa0725320:CDS 25.0%
!! ATTAAGTTGTTTACCTAAAG+AGG - chr5_1:24971916-24971935 None:intergenic 25.0%
! TTCTATTACAAAAGTCAAAC+TGG + chr5_1:24971988-24972007 Msa0725320:intron 25.0%
!!! TTTATTTCTATAAGTTCTCC+AGG - chr5_1:24972154-24972173 None:intergenic 25.0%
! AAAAGACTAAGGATTTCTTT+AGG - chr5_1:24972440-24972459 None:intergenic 25.0%
!!! AAATCCTTAGTCTTTTACAA+AGG + chr5_1:24972444-24972463 Msa0725320:CDS 25.0%
! ACAAGATACTTAGAATTAGA+GGG - chr5_1:24972722-24972741 None:intergenic 25.0%
! AACAAGATACTTAGAATTAG+AGG - chr5_1:24972723-24972742 None:intergenic 25.0%
! TCTATATTAATTAGAGCTAG+TGG + chr5_1:24972789-24972808 Msa0725320:intron 25.0%
! GTTGGCCAAATAATTAAATA+AGG + chr5_1:24972821-24972840 Msa0725320:intron 25.0%
! ATGAAACAGTTATAAAGAGA+TGG + chr5_1:24972920-24972939 Msa0725320:intron 25.0%
! ACATTTCAACATATCATAGT+TGG + chr5_1:24972965-24972984 Msa0725320:intron 25.0%
!!! AACTTTTAAAGACACACATA+TGG - chr5_1:24972991-24973010 None:intergenic 25.0%
!! TAACTTTTCTTTTAACATGC+AGG + chr5_1:24973160-24973179 Msa0725320:intron 25.0%
!! CATGTTGTTTGAACAAAATT+GGG - chr5_1:24973315-24973334 None:intergenic 25.0%
!! ACATGTTGTTTGAACAAAAT+TGG - chr5_1:24973316-24973335 None:intergenic 25.0%
! ATTAGTCCATTACTACATAA+AGG + chr5_1:24973431-24973450 Msa0725320:CDS 25.0%
! ACAACTACAAATTTCATGAA+TGG + chr5_1:24973644-24973663 Msa0725320:CDS 25.0%
!! TTATCATATTGGTTACCAAA+TGG - chr5_1:24973704-24973723 None:intergenic 25.0%
! CCAATGCATTATTATCATAT+TGG - chr5_1:24973715-24973734 None:intergenic 25.0%
! CCAATATGATAATAATGCAT+TGG + chr5_1:24973712-24973731 Msa0725320:CDS 25.0%
!!! TGATAATAATGCATTGGTTA+AGG + chr5_1:24973718-24973737 Msa0725320:CDS 25.0%
! ACATTCACATCAACATTATA+AGG - chr5_1:24973746-24973765 None:intergenic 25.0%
TTGATGAAGTTATCTTACCA+GGG + chr5_1:24971679-24971698 Msa0725320:CDS 30.0%
TATAAGTGTCTTGTCTTACT+TGG - chr5_1:24971831-24971850 None:intergenic 30.0%
!! GTTGTTTTCATAAGTTATCC+TGG + chr5_1:24972133-24972152 Msa0725320:intron 30.0%
TTAGCATAGTTTATGGAAAG+TGG - chr5_1:24972211-24972230 None:intergenic 30.0%
ACACTGTTTAGCATAGTTTA+TGG - chr5_1:24972218-24972237 None:intergenic 30.0%
! TTTCTGTATTTTCTGTCTCT+TGG - chr5_1:24972321-24972340 None:intergenic 30.0%
TCTTCCTTTGTAAAAGACTA+AGG - chr5_1:24972451-24972470 None:intergenic 30.0%
! TTAGGTTTTACTCACATTAG+CGG - chr5_1:24972574-24972593 None:intergenic 30.0%
CATTACGATCCTTGATATTA+TGG + chr5_1:24972643-24972662 Msa0725320:intron 30.0%
AAACAGTTATAAAGAGATGG+AGG + chr5_1:24972923-24972942 Msa0725320:intron 30.0%
AACAGTTATAAAGAGATGGA+GGG + chr5_1:24972924-24972943 Msa0725320:intron 30.0%
! TTTTAACATGCAGGAATCAT+GGG + chr5_1:24973169-24973188 Msa0725320:intron 30.0%
!!! CTTTTTGGTTAGCATATTAG+AGG - chr5_1:24973282-24973301 None:intergenic 30.0%
TAACATCTACATCAAAGTCT+TGG - chr5_1:24973394-24973413 None:intergenic 30.0%
TGAAAGCCTTTATGTAGTAA+TGG - chr5_1:24973440-24973459 None:intergenic 30.0%
TTAGTGTTAGATGTTTCAAG+TGG - chr5_1:24973521-24973540 None:intergenic 30.0%
TGAAACATCCATTGTAGATT+TGG - chr5_1:24973558-24973577 None:intergenic 30.0%
! TTTTAACAAGACATGTGATG+AGG + chr5_1:24973619-24973638 Msa0725320:CDS 30.0%
ACTACAAATTTCATGAATGG+TGG + chr5_1:24973647-24973666 Msa0725320:CDS 30.0%
CTACAAATTTCATGAATGGT+GGG + chr5_1:24973648-24973667 Msa0725320:CDS 30.0%
AATTCTTGTTCATCAATACG+AGG - chr5_1:24973770-24973789 None:intergenic 30.0%
!! ATTTCAATATTGGTGATGCA+TGG + chr5_1:24973795-24973814 Msa0725320:CDS 30.0%
! ATGGAAGTCAAATTTGCTTT+GGG + chr5_1:24973814-24973833 Msa0725320:CDS 30.0%
TTGGTTGTTGAATAACTAGA+GGG - chr5_1:24973866-24973885 None:intergenic 30.0%
TTGATGAAGTTATCTTACCA+GGG + chr5_1:24971679-24971698 Msa0725320:CDS 30.0%
TATAAGTGTCTTGTCTTACT+TGG - chr5_1:24971831-24971850 None:intergenic 30.0%
!! GTTGTTTTCATAAGTTATCC+TGG + chr5_1:24972133-24972152 Msa0725320:intron 30.0%
TTAGCATAGTTTATGGAAAG+TGG - chr5_1:24972211-24972230 None:intergenic 30.0%
ACACTGTTTAGCATAGTTTA+TGG - chr5_1:24972218-24972237 None:intergenic 30.0%
! TTTCTGTATTTTCTGTCTCT+TGG - chr5_1:24972321-24972340 None:intergenic 30.0%
TCTTCCTTTGTAAAAGACTA+AGG - chr5_1:24972451-24972470 None:intergenic 30.0%
! TTAGGTTTTACTCACATTAG+CGG - chr5_1:24972574-24972593 None:intergenic 30.0%
CATTACGATCCTTGATATTA+TGG + chr5_1:24972643-24972662 Msa0725320:intron 30.0%
AAACAGTTATAAAGAGATGG+AGG + chr5_1:24972923-24972942 Msa0725320:intron 30.0%
AACAGTTATAAAGAGATGGA+GGG + chr5_1:24972924-24972943 Msa0725320:intron 30.0%
! TTTTAACATGCAGGAATCAT+GGG + chr5_1:24973169-24973188 Msa0725320:intron 30.0%
!!! CTTTTTGGTTAGCATATTAG+AGG - chr5_1:24973282-24973301 None:intergenic 30.0%
TAACATCTACATCAAAGTCT+TGG - chr5_1:24973394-24973413 None:intergenic 30.0%
TGAAAGCCTTTATGTAGTAA+TGG - chr5_1:24973440-24973459 None:intergenic 30.0%
TTAGTGTTAGATGTTTCAAG+TGG - chr5_1:24973521-24973540 None:intergenic 30.0%
TGAAACATCCATTGTAGATT+TGG - chr5_1:24973558-24973577 None:intergenic 30.0%
! TTTTAACAAGACATGTGATG+AGG + chr5_1:24973619-24973638 Msa0725320:CDS 30.0%
ACTACAAATTTCATGAATGG+TGG + chr5_1:24973647-24973666 Msa0725320:CDS 30.0%
CTACAAATTTCATGAATGGT+GGG + chr5_1:24973648-24973667 Msa0725320:CDS 30.0%
AATTCTTGTTCATCAATACG+AGG - chr5_1:24973770-24973789 None:intergenic 30.0%
!! ATTTCAATATTGGTGATGCA+TGG + chr5_1:24973795-24973814 Msa0725320:CDS 30.0%
! ATGGAAGTCAAATTTGCTTT+GGG + chr5_1:24973814-24973833 Msa0725320:CDS 30.0%
TTGGTTGTTGAATAACTAGA+GGG - chr5_1:24973866-24973885 None:intergenic 30.0%
CTTGATGAAGTTATCTTACC+AGG + chr5_1:24971678-24971697 Msa0725320:CDS 35.0%
AAGTTATCTTACCAGGGTTT+AGG + chr5_1:24971685-24971704 Msa0725320:CDS 35.0%
TTAATGAGCTCAATAGACAG+AGG - chr5_1:24971771-24971790 None:intergenic 35.0%
AAACTGAACTTAGCCTCTTT+AGG + chr5_1:24971900-24971919 Msa0725320:intron 35.0%
!! AAGTCAAACTGGTTCGATAT+AGG + chr5_1:24971999-24972018 Msa0725320:intron 35.0%
GAAAATACAGAAACAGTGCA+AGG + chr5_1:24972328-24972347 Msa0725320:CDS 35.0%
TTTCTTTAGGCCAATGCATT+TGG - chr5_1:24972427-24972446 None:intergenic 35.0%
CTAAAGGAATCAAAACTGAC+TGG + chr5_1:24972475-24972494 Msa0725320:CDS 35.0%
AAGTACTTCTTTGGTGAAAG+TGG - chr5_1:24972537-24972556 None:intergenic 35.0%
!! ACTTTCACCAAAGAAGTACT+TGG + chr5_1:24972536-24972555 Msa0725320:CDS 35.0%
! GTTTTCTCCAAGTACTTCTT+TGG - chr5_1:24972546-24972565 None:intergenic 35.0%
! TAGGTTTTACTCACATTAGC+GGG - chr5_1:24972573-24972592 None:intergenic 35.0%
TGCGATTCTCCATAATATCA+AGG - chr5_1:24972655-24972674 None:intergenic 35.0%
TTAGAGCTAGTGGAATAACT+AGG + chr5_1:24972799-24972818 Msa0725320:intron 35.0%
GACTGCTAGAAAAATCTTGA+CGG + chr5_1:24973062-24973081 Msa0725320:intron 35.0%
! CTTTTAACATGCAGGAATCA+TGG + chr5_1:24973168-24973187 Msa0725320:intron 35.0%
! AAAGAGCTTTATCTCACTCT+TGG + chr5_1:24973231-24973250 Msa0725320:CDS 35.0%
! AAGAGCTTTATCTCACTCTT+GGG + chr5_1:24973232-24973251 Msa0725320:CDS 35.0%
! AGAGGTTCTTGTTTCAGATA+GGG - chr5_1:24973264-24973283 None:intergenic 35.0%
! TAGAGGTTCTTGTTTCAGAT+AGG - chr5_1:24973265-24973284 None:intergenic 35.0%
!! TTGGGTGATTTCTTGCTTTT+TGG - chr5_1:24973297-24973316 None:intergenic 35.0%
! CATTGTTGTTAGTGTAGAAG+TGG - chr5_1:24973367-24973386 None:intergenic 35.0%
! GTTAAAATCACCAAGCATTG+AGG - chr5_1:24973606-24973625 None:intergenic 35.0%
AGTGACTACTCATTACCATT+TGG + chr5_1:24973686-24973705 Msa0725320:CDS 35.0%
! CATGGAAGTCAAATTTGCTT+TGG + chr5_1:24973813-24973832 Msa0725320:CDS 35.0%
TAACTAGAGGGAACATCAAT+AGG - chr5_1:24973854-24973873 None:intergenic 35.0%
CTTGGTTGTTGAATAACTAG+AGG - chr5_1:24973867-24973886 None:intergenic 35.0%
CTTGATGAAGTTATCTTACC+AGG + chr5_1:24971678-24971697 Msa0725320:CDS 35.0%
AAGTTATCTTACCAGGGTTT+AGG + chr5_1:24971685-24971704 Msa0725320:CDS 35.0%
TTAATGAGCTCAATAGACAG+AGG - chr5_1:24971771-24971790 None:intergenic 35.0%
AAACTGAACTTAGCCTCTTT+AGG + chr5_1:24971900-24971919 Msa0725320:intron 35.0%
!! AAGTCAAACTGGTTCGATAT+AGG + chr5_1:24971999-24972018 Msa0725320:intron 35.0%
GAAAATACAGAAACAGTGCA+AGG + chr5_1:24972328-24972347 Msa0725320:CDS 35.0%
TTTCTTTAGGCCAATGCATT+TGG - chr5_1:24972427-24972446 None:intergenic 35.0%
CTAAAGGAATCAAAACTGAC+TGG + chr5_1:24972475-24972494 Msa0725320:CDS 35.0%
AAGTACTTCTTTGGTGAAAG+TGG - chr5_1:24972537-24972556 None:intergenic 35.0%
!! ACTTTCACCAAAGAAGTACT+TGG + chr5_1:24972536-24972555 Msa0725320:CDS 35.0%
! GTTTTCTCCAAGTACTTCTT+TGG - chr5_1:24972546-24972565 None:intergenic 35.0%
! TAGGTTTTACTCACATTAGC+GGG - chr5_1:24972573-24972592 None:intergenic 35.0%
TGCGATTCTCCATAATATCA+AGG - chr5_1:24972655-24972674 None:intergenic 35.0%
TTAGAGCTAGTGGAATAACT+AGG + chr5_1:24972799-24972818 Msa0725320:intron 35.0%
GACTGCTAGAAAAATCTTGA+CGG + chr5_1:24973062-24973081 Msa0725320:intron 35.0%
! CTTTTAACATGCAGGAATCA+TGG + chr5_1:24973168-24973187 Msa0725320:intron 35.0%
! AAAGAGCTTTATCTCACTCT+TGG + chr5_1:24973231-24973250 Msa0725320:CDS 35.0%
! AAGAGCTTTATCTCACTCTT+GGG + chr5_1:24973232-24973251 Msa0725320:CDS 35.0%
! AGAGGTTCTTGTTTCAGATA+GGG - chr5_1:24973264-24973283 None:intergenic 35.0%
! TAGAGGTTCTTGTTTCAGAT+AGG - chr5_1:24973265-24973284 None:intergenic 35.0%
!! TTGGGTGATTTCTTGCTTTT+TGG - chr5_1:24973297-24973316 None:intergenic 35.0%
! CATTGTTGTTAGTGTAGAAG+TGG - chr5_1:24973367-24973386 None:intergenic 35.0%
! GTTAAAATCACCAAGCATTG+AGG - chr5_1:24973606-24973625 None:intergenic 35.0%
AGTGACTACTCATTACCATT+TGG + chr5_1:24973686-24973705 Msa0725320:CDS 35.0%
! CATGGAAGTCAAATTTGCTT+TGG + chr5_1:24973813-24973832 Msa0725320:CDS 35.0%
TAACTAGAGGGAACATCAAT+AGG - chr5_1:24973854-24973873 None:intergenic 35.0%
CTTGGTTGTTGAATAACTAG+AGG - chr5_1:24973867-24973886 None:intergenic 35.0%
! CAACTGATGAAGAGCTTGTT+GGG + chr5_1:24971715-24971734 Msa0725320:CDS 40.0%
! AGTTAAGGTGCTAACCTAGT+TGG + chr5_1:24972048-24972067 Msa0725320:intron 40.0%
! GTTAAGGTGCTAACCTAGTT+GGG + chr5_1:24972049-24972068 Msa0725320:intron 40.0%
TGTGTAGAGTTTGCAAGTAC+AGG + chr5_1:24972270-24972289 Msa0725320:intron 40.0%
AAACAGTGCAAGGCCTAATA+GGG + chr5_1:24972338-24972357 Msa0725320:CDS 40.0%
AAACCTATCTACTCCTCAGA+AGG + chr5_1:24972399-24972418 Msa0725320:CDS 40.0%
! AATGCATTTGGAACCTTCTG+AGG - chr5_1:24972415-24972434 None:intergenic 40.0%
TCAGAAGGTTCCAAATGCAT+TGG + chr5_1:24972414-24972433 Msa0725320:CDS 40.0%
TACAAAGGAAGAGCTGCTAA+AGG + chr5_1:24972459-24972478 Msa0725320:CDS 40.0%
GAAAGTGGATCTATGAGAGA+AGG - chr5_1:24972522-24972541 None:intergenic 40.0%
TTTACTCACATTAGCGGGAA+TGG - chr5_1:24972568-24972587 None:intergenic 40.0%
AACTTGTGCGATGTCAACAT+AGG + chr5_1:24972684-24972703 Msa0725320:intron 40.0%
AGCTAGTGGAATAACTAGGT+TGG + chr5_1:24972803-24972822 Msa0725320:intron 40.0%
! AGTGTAGAAGTGGTTGGTTA+AGG - chr5_1:24973357-24973376 None:intergenic 40.0%
GTTGTTAGTGTAGAAGTGGT+TGG - chr5_1:24973363-24973382 None:intergenic 40.0%
ATGTCATCATCCTCAATGCT+TGG + chr5_1:24973593-24973612 Msa0725320:CDS 40.0%
! CAACTGATGAAGAGCTTGTT+GGG + chr5_1:24971715-24971734 Msa0725320:CDS 40.0%
! AGTTAAGGTGCTAACCTAGT+TGG + chr5_1:24972048-24972067 Msa0725320:intron 40.0%
! GTTAAGGTGCTAACCTAGTT+GGG + chr5_1:24972049-24972068 Msa0725320:intron 40.0%
TGTGTAGAGTTTGCAAGTAC+AGG + chr5_1:24972270-24972289 Msa0725320:intron 40.0%
AAACAGTGCAAGGCCTAATA+GGG + chr5_1:24972338-24972357 Msa0725320:CDS 40.0%
AAACCTATCTACTCCTCAGA+AGG + chr5_1:24972399-24972418 Msa0725320:CDS 40.0%
! AATGCATTTGGAACCTTCTG+AGG - chr5_1:24972415-24972434 None:intergenic 40.0%
TCAGAAGGTTCCAAATGCAT+TGG + chr5_1:24972414-24972433 Msa0725320:CDS 40.0%
TACAAAGGAAGAGCTGCTAA+AGG + chr5_1:24972459-24972478 Msa0725320:CDS 40.0%
GAAAGTGGATCTATGAGAGA+AGG - chr5_1:24972522-24972541 None:intergenic 40.0%
TTTACTCACATTAGCGGGAA+TGG - chr5_1:24972568-24972587 None:intergenic 40.0%
AACTTGTGCGATGTCAACAT+AGG + chr5_1:24972684-24972703 Msa0725320:intron 40.0%
AGCTAGTGGAATAACTAGGT+TGG + chr5_1:24972803-24972822 Msa0725320:intron 40.0%
! AGTGTAGAAGTGGTTGGTTA+AGG - chr5_1:24973357-24973376 None:intergenic 40.0%
GTTGTTAGTGTAGAAGTGGT+TGG - chr5_1:24973363-24973382 None:intergenic 40.0%
ATGTCATCATCCTCAATGCT+TGG + chr5_1:24973593-24973612 Msa0725320:CDS 40.0%
GTTGGATGAAACCTAAACCC+TGG - chr5_1:24971699-24971718 None:intergenic 45.0%
CCAACAAGCTCTTCATCAGT+TGG - chr5_1:24971717-24971736 None:intergenic 45.0%
CCAACTGATGAAGAGCTTGT+TGG + chr5_1:24971714-24971733 Msa0725320:CDS 45.0%
GTCTTACTTGGAAGATCCCA+AGG - chr5_1:24971819-24971838 None:intergenic 45.0%
CAAGTACAGGAGAGAAAGAG+TGG + chr5_1:24972283-24972302 Msa0725320:CDS 45.0%
GAAACAGTGCAAGGCCTAAT+AGG + chr5_1:24972337-24972356 Msa0725320:CDS 45.0%
! CTGGATTCTGGAAAGCTACA+GGG + chr5_1:24972370-24972389 Msa0725320:CDS 45.0%
! GAACCTTCTGAGGAGTAGAT+AGG - chr5_1:24972405-24972424 None:intergenic 45.0%
ACTGGATGATGCATGAGTTC+AGG + chr5_1:24972493-24972512 Msa0725320:CDS 45.0%
GTTGGATGAAACCTAAACCC+TGG - chr5_1:24971699-24971718 None:intergenic 45.0%
CCAACAAGCTCTTCATCAGT+TGG - chr5_1:24971717-24971736 None:intergenic 45.0%
CCAACTGATGAAGAGCTTGT+TGG + chr5_1:24971714-24971733 Msa0725320:CDS 45.0%
GTCTTACTTGGAAGATCCCA+AGG - chr5_1:24971819-24971838 None:intergenic 45.0%
CAAGTACAGGAGAGAAAGAG+TGG + chr5_1:24972283-24972302 Msa0725320:CDS 45.0%
GAAACAGTGCAAGGCCTAAT+AGG + chr5_1:24972337-24972356 Msa0725320:CDS 45.0%
! CTGGATTCTGGAAAGCTACA+GGG + chr5_1:24972370-24972389 Msa0725320:CDS 45.0%
! GAACCTTCTGAGGAGTAGAT+AGG - chr5_1:24972405-24972424 None:intergenic 45.0%
ACTGGATGATGCATGAGTTC+AGG + chr5_1:24972493-24972512 Msa0725320:CDS 45.0%
AACGTGCGAACATCCCAACT+AGG - chr5_1:24972065-24972084 None:intergenic 50.0%
GCAAGGCCTAATAGGGTAAC+TGG + chr5_1:24972345-24972364 Msa0725320:CDS 50.0%
CCAGCTCCAGTTACCCTATT+AGG - chr5_1:24972354-24972373 None:intergenic 50.0%
CCTAATAGGGTAACTGGAGC+TGG + chr5_1:24972351-24972370 Msa0725320:CDS 50.0%
! GCTGGATTCTGGAAAGCTAC+AGG + chr5_1:24972369-24972388 Msa0725320:CDS 50.0%
AACGTGCGAACATCCCAACT+AGG - chr5_1:24972065-24972084 None:intergenic 50.0%
GCAAGGCCTAATAGGGTAAC+TGG + chr5_1:24972345-24972364 Msa0725320:CDS 50.0%
CCAGCTCCAGTTACCCTATT+AGG - chr5_1:24972354-24972373 None:intergenic 50.0%
CCTAATAGGGTAACTGGAGC+TGG + chr5_1:24972351-24972370 Msa0725320:CDS 50.0%
! GCTGGATTCTGGAAAGCTAC+AGG + chr5_1:24972369-24972388 Msa0725320:CDS 50.0%
GGGTAACTGGAGCTGGATTC+TGG + chr5_1:24972358-24972377 Msa0725320:CDS 55.0%
GGGTAACTGGAGCTGGATTC+TGG + chr5_1:24972358-24972377 Msa0725320:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 24971651 24973898 24971651 ID=Msa0725320;Name=Msa0725320
chr5_1 mRNA 24971651 24973898 24971651 ID=Msa0725320-mRNA-1;Parent=Msa0725320;Name=Msa0725320-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|399
chr5_1 exon 24971651 24971831 24971651 ID=Msa0725320-mRNA-1:exon:9057;Parent=Msa0725320-mRNA-1
chr5_1 exon 24972277 24972578 24972277 ID=Msa0725320-mRNA-1:exon:9058;Parent=Msa0725320-mRNA-1
chr5_1 exon 24973182 24973898 24973182 ID=Msa0725320-mRNA-1:exon:9059;Parent=Msa0725320-mRNA-1
chr5_1 CDS 24971651 24971831 24971651 ID=Msa0725320-mRNA-1:cds;Parent=Msa0725320-mRNA-1
chr5_1 CDS 24972277 24972578 24972277 ID=Msa0725320-mRNA-1:cds;Parent=Msa0725320-mRNA-1
chr5_1 CDS 24973182 24973898 24973182 ID=Msa0725320-mRNA-1:cds;Parent=Msa0725320-mRNA-1
Gene Sequence

>Msa0725320

ATGGAAGAAAGAAATGATGGTGAAAAACTTGATGAAGTTATCTTACCAGGGTTTAGGTTTCATCCAACTGATGAAGAGCTTGTTGGGTTTTACCTAAAGAGAAAGATTCAACAAAGGCCTCTGTCTATTGAGCTCATTAAGCAGCTTGATATCTATAAATATGATCCTTGGGATCTTCCAAAGTTTGCAAGTACAGGAGAGAAAGAGTGGTATTTCTACTGTCCAAGAGACAGAAAATACAGAAACAGTGCAAGGCCTAATAGGGTAACTGGAGCTGGATTCTGGAAAGCTACAGGGACAGATAAACCTATCTACTCCTCAGAAGGTTCCAAATGCATTGGCCTAAAGAAATCCTTAGTCTTTTACAAAGGAAGAGCTGCTAAAGGAATCAAAACTGACTGGATGATGCATGAGTTCAGGCTACCTTCTCTCATAGATCCACTTTCACCAAAGAAGTACTTGGAGAAAACCATTCCCGCTAATGAATCATGGGCTATCTGTAGAATATTCAAGAAAACAAATTCTACGGCTCAAAGAGCTTTATCTCACTCTTGGGTTTCTTCCCTATCTGAAACAAGAACCTCTAATATGCTAACCAAAAAGCAAGAAATCACCCAATTTTGTTCAAACAACATGTCATTGACAAAGAATACATCCTTAACCAACCACTTCTACACTAACAACAATGATAACCAAGACTTTGATGTAGATGTTACCCCTTATAAATCAATTATTAGTCCATTACTACATAAAGGCTTTCATCACTTGCCCATTTCAAATGAAGATCTTAATGCAAACTTGATATTCTCATCATCATCTCCACTTGAAACATCTAACACTAATAATAATATTATTTCCAAATCTACAATGGATGTTTCATCAATGTTATTGAATATGTCATCATCCTCAATGCTTGGTGATTTTAACAAGACATGTGATGAGGTTACAACTACAAATTTCATGAATGGTGGGTTGCAAGAGCAATTTAGTGACTACTCATTACCATTTGGTAACCAATATGATAATAATGCATTGGTTAAGGTACCTTATAATGTTGATGTGAATGTGCCTCGTATTGATGAACAAGAATTGATGAATTTCAATATTGGTGATGCATGGAAGTCAAATTTGCTTTGGGATACTTCATTTTGTCCTATTGATGTTCCCTCTAGTTATTCAACAACCAAGTGTTACACTTAA
Protein sequence

>Msa0725320

MEERNDGEKLDEVILPGFRFHPTDEELVGFYLKRKIQQRPLSIELIKQLDIYKYDPWDLPKFASTGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDKPIYSSEGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRLPSLIDPLSPKKYLEKTIPANESWAICRIFKKTNSTAQRALSHSWVSSLSETRTSNMLTKKQEITQFCSNNMSLTKNTSLTNHFYTNNNDNQDFDVDVTPYKSIISPLLHKGFHHLPISNEDLNANLIFSSSSPLETSNTNNNIISKSTMDVSSMLLNMSSSSMLGDFNKTCDEVTTTNFMNGGLQEQFSDYSLPFGNQYDNNALVKVPYNVDVNVPRIDEQELMNFNIGDAWKSNLLWDTSFCPIDVPSSYSTTKCYT*