Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725540 | XP_003613773.1 | 96.712 | 669 | 19 | 1 | 1 | 669 | 1 | 666 | 0.0 | 1341 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725540 | sp|Q9FMS5|MS1_ARATH | 51.173 | 682 | 292 | 15 | 7 | 669 | 13 | 672 | 0.0 | 665 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725540 | G7KF85 | 96.712 | 669 | 19 | 1 | 1 | 669 | 1 | 666 | 0.0 | 1341 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0725540 | TR | PHD |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725540 | MtrunA17_Chr5g0417171 | 96.522 | 460 | 13 | 1 | 210 | 669 | 1 | 457 | 0.0 | 917 |
| Msa0725540 | MtrunA17_Chr5g0434341 | 33.101 | 716 | 372 | 17 | 6 | 658 | 30 | 701 | 1.47e-121 | 379 |
| Msa0725540 | MtrunA17_Chr4g0017901 | 31.949 | 626 | 346 | 20 | 76 | 662 | 85 | 669 | 5.77e-87 | 287 |
| Msa0725540 | MtrunA17_Chr1g0188421 | 31.455 | 550 | 327 | 16 | 125 | 659 | 12 | 526 | 4.81e-74 | 249 |
| Msa0725540 | MtrunA17_Chr5g0417191 | 96.000 | 100 | 4 | 0 | 1 | 100 | 1 | 100 | 3.82e-63 | 204 |
| Msa0725540 | MtrunA17_Chr5g0417181 | 96.825 | 63 | 2 | 0 | 137 | 199 | 1 | 63 | 6.09e-35 | 126 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725540 | AT5G22260.1 | 51.173 | 682 | 292 | 15 | 7 | 669 | 13 | 672 | 0.0 | 665 |
| Msa0725540 | AT1G66170.1 | 31.897 | 696 | 385 | 18 | 10 | 663 | 10 | 658 | 1.84e-108 | 344 |
| Msa0725540 | AT1G33420.1 | 31.401 | 621 | 345 | 18 | 76 | 669 | 92 | 658 | 8.62e-85 | 281 |
| Msa0725540 | AT1G33420.2 | 31.271 | 598 | 331 | 17 | 98 | 669 | 10 | 553 | 2.46e-81 | 269 |
| Msa0725540 | AT2G01810.1 | 27.994 | 718 | 399 | 23 | 12 | 658 | 12 | 682 | 4.57e-80 | 268 |
| Msa0725540 | AT2G07714.1 | 43.200 | 125 | 64 | 2 | 184 | 303 | 1 | 123 | 7.70e-26 | 105 |
| Msa0725540 | ATMG00550.1 | 41.414 | 99 | 51 | 2 | 210 | 303 | 1 | 97 | 1.37e-15 | 75.1 |
Find 142 sgRNAs with CRISPR-Local
Find 291 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGCTTCTTATTGCTTCTA+TGG | 0.182195 | 5_1:+25242913 | None:intergenic |
| TTTACTTGAATATGCAAATT+TGG | 0.182386 | 5_1:-25245699 | Msa0725540:CDS |
| CACTCCACAATTCCCTTCTT+TGG | 0.188498 | 5_1:+25241834 | None:intergenic |
| CAAATGGTACAATGAATATT+AGG | 0.191847 | 5_1:-25244305 | Msa0725540:CDS |
| GGTACCCAGTTATGTTTAAT+AGG | 0.198118 | 5_1:-25245748 | Msa0725540:CDS |
| GATTTGGTTACCACCCAAAT+TGG | 0.238511 | 5_1:+25244176 | None:intergenic |
| TGGTACCTTTGGAAGATTAA+TGG | 0.241935 | 5_1:+25242842 | None:intergenic |
| GTATTTCACTCTAATGGATT+TGG | 0.252558 | 5_1:-25244234 | Msa0725540:CDS |
| CATGGTGTATTTCACTCTAA+TGG | 0.275387 | 5_1:-25244240 | Msa0725540:CDS |
| AAATGGTACAATGAATATTA+GGG | 0.276046 | 5_1:-25244304 | Msa0725540:CDS |
| GGTTGGCATGGTGGTGAAAT+TGG | 0.276303 | 5_1:-25241891 | Msa0725540:CDS |
| GATGCCCTATTAAACATAAC+TGG | 0.280405 | 5_1:+25245743 | None:intergenic |
| ATTGGAAACTGGTTCCAATT+TGG | 0.281618 | 5_1:-25244190 | Msa0725540:CDS |
| TCAAATAATACTCATGATTA+TGG | 0.281699 | 5_1:+25242126 | None:intergenic |
| TGAGCCATGGTTTGGTCGTT+GGG | 0.290085 | 5_1:-25242990 | Msa0725540:CDS |
| CTCTAATTCTATTAATTTGT+TGG | 0.294459 | 5_1:+25244275 | None:intergenic |
| GTGTCTCCTTTGAAGGTAAT+AGG | 0.300824 | 5_1:+25244364 | None:intergenic |
| TTGGAAACTGGTTCCAATTT+GGG | 0.304170 | 5_1:-25244189 | Msa0725540:CDS |
| ATCACTCTCTTGTCACCCTT+GGG | 0.305190 | 5_1:-25242808 | Msa0725540:CDS |
| CAGAAAGTGTTTGGTACCTT+TGG | 0.317798 | 5_1:+25242831 | None:intergenic |
| GTAACCAAATCATGGAGTTT+TGG | 0.318449 | 5_1:-25244164 | Msa0725540:CDS |
| TGAGGAACTTCTTCATCATT+TGG | 0.319257 | 5_1:+25241723 | None:intergenic |
| GATTCCAAAACTCCATGATT+TGG | 0.323998 | 5_1:+25244160 | None:intergenic |
| GATTAATGGGATTTCATGAT+TGG | 0.324820 | 5_1:+25242856 | None:intergenic |
| TATTTCACTCTAATGGATTT+GGG | 0.327887 | 5_1:-25244233 | Msa0725540:CDS |
| TTGACACAAAACCAAGTATA+GGG | 0.330487 | 5_1:-25242310 | Msa0725540:CDS |
| GGTACCTTTGGAAGATTAAT+GGG | 0.334887 | 5_1:+25242843 | None:intergenic |
| AAATTTGGTCGAGGATGTTT+TGG | 0.336081 | 5_1:-25242962 | Msa0725540:CDS |
| GTTCCTTTGCATGTTGAGTT+AGG | 0.340925 | 5_1:-25242209 | Msa0725540:CDS |
| TACTCATAACCAACCCTTCA+TGG | 0.346998 | 5_1:+25242432 | None:intergenic |
| CTACTTAGTGTCTCCTTTGA+AGG | 0.370472 | 5_1:+25244357 | None:intergenic |
| ATTGTCGTTGGTCTCCTAAA+AGG | 0.374811 | 5_1:-25242694 | Msa0725540:CDS |
| CAACAAATTAATAGAATTAG+AGG | 0.376914 | 5_1:-25244274 | Msa0725540:CDS |
| AGATATCTTATCAAAGACTA+TGG | 0.380824 | 5_1:-25242236 | Msa0725540:CDS |
| GGGAATTTGATGAATGCAAA+AGG | 0.384193 | 5_1:-25241966 | Msa0725540:CDS |
| AGAAATTCTGCCCCTATACT+TGG | 0.386162 | 5_1:+25242299 | None:intergenic |
| GCATTCATCAAATTCCCATT+TGG | 0.391057 | 5_1:+25241972 | None:intergenic |
| TTAAGGAATGTTAACAATGT+AGG | 0.391672 | 5_1:-25242149 | Msa0725540:CDS |
| TATCGGAGACACTGGTTTGT+TGG | 0.392257 | 5_1:-25242576 | Msa0725540:CDS |
| CTTGTGATATTTGTGAAATT+CGG | 0.397758 | 5_1:-25241770 | Msa0725540:CDS |
| ATTGACACAAAACCAAGTAT+AGG | 0.409740 | 5_1:-25242311 | Msa0725540:CDS |
| TAGTAGTAATAATAAAGTTA+AGG | 0.411948 | 5_1:-25242399 | Msa0725540:CDS |
| GTACCCAGTTATGTTTAATA+GGG | 0.412496 | 5_1:-25245747 | Msa0725540:CDS |
| GATCACTCTCTTGTCACCCT+TGG | 0.414717 | 5_1:-25242809 | Msa0725540:CDS |
| ACGACAATTTGTTTCGACTA+AGG | 0.424799 | 5_1:+25242709 | None:intergenic |
| GTGAGCCATGGTTTGGTCGT+TGG | 0.429683 | 5_1:-25242991 | Msa0725540:CDS |
| TCATATAGTTATGGCAAAGA+AGG | 0.438373 | 5_1:+25241657 | None:intergenic |
| TTCAATGTGATACATTCATA+AGG | 0.439527 | 5_1:+25242083 | None:intergenic |
| CCACGTCGTTGGAAACTACT+TGG | 0.439905 | 5_1:-25242528 | Msa0725540:CDS |
| ACTTCTTATTGCAAATGAAA+TGG | 0.444039 | 5_1:+25244394 | None:intergenic |
| CAGCTATACCATTGGCAGCT+AGG | 0.451926 | 5_1:-25242274 | Msa0725540:CDS |
| TGTGTCAATGGATTGGAAAC+TGG | 0.453070 | 5_1:-25244201 | Msa0725540:CDS |
| ACAAGAGAAGGAAGAGATGT+GGG | 0.459576 | 5_1:-25245805 | Msa0725540:CDS |
| GATGCCGCACGCGCTTATAT+CGG | 0.463998 | 5_1:-25242593 | Msa0725540:CDS |
| TGGTGAAATTGGAATCAATA+TGG | 0.465440 | 5_1:-25241880 | Msa0725540:CDS |
| GGAACCAATGCATGTTTCAC+GGG | 0.465445 | 5_1:+25242745 | None:intergenic |
| GAGAGTGATCAGAAAGTGTT+TGG | 0.465582 | 5_1:+25242822 | None:intergenic |
| GGAATTGTGGAGTGCATTTG+TGG | 0.466448 | 5_1:-25241825 | Msa0725540:CDS |
| TCATTTCCTATTACCTTCAA+AGG | 0.468418 | 5_1:-25244370 | Msa0725540:CDS |
| TCATTTCGTGAGAATGTGAA+TGG | 0.471073 | 5_1:-25245722 | Msa0725540:CDS |
| AATGTTTACCCTTGCCATGA+AGG | 0.474845 | 5_1:-25242446 | Msa0725540:CDS |
| GGGCATTTGCTATGTGTCAA+TGG | 0.487364 | 5_1:-25244213 | Msa0725540:CDS |
| GCATACAGTGAGCCATGGTT+TGG | 0.489223 | 5_1:-25242998 | Msa0725540:CDS |
| GGTTCGTCGAAGCTTGAATC+CGG | 0.492847 | 5_1:-25242507 | Msa0725540:CDS |
| ATACATTCATAAGGTGGCAT+TGG | 0.496564 | 5_1:+25242092 | None:intergenic |
| GACTAAGGCGCTTGTGCTGA+AGG | 0.502475 | 5_1:+25242724 | None:intergenic |
| GGAATTTGATGAATGCAAAA+GGG | 0.503842 | 5_1:-25241965 | Msa0725540:CDS |
| ATGTGAAAGGGATCCAAAGA+AGG | 0.504134 | 5_1:-25241847 | Msa0725540:CDS |
| GTCTCCTAAAAGGATCGAAA+TGG | 0.507579 | 5_1:-25242684 | Msa0725540:CDS |
| TTTGCTATGTGTCAATGGAT+TGG | 0.518315 | 5_1:-25244208 | Msa0725540:CDS |
| TGTGCAATGGATTGCAAGCA+AGG | 0.519028 | 5_1:-25244134 | Msa0725540:intron |
| AACAAGAGAAGGAAGAGATG+TGG | 0.523147 | 5_1:-25245806 | Msa0725540:CDS |
| TGCAACCATTGTCAATATGT+TGG | 0.523953 | 5_1:-25245554 | Msa0725540:intron |
| GAATGCAAAAGGGAATGAAA+TGG | 0.526326 | 5_1:-25241955 | Msa0725540:CDS |
| AGGACAAGTACAAGATTACA+AGG | 0.526429 | 5_1:-25242379 | Msa0725540:CDS |
| ATGTTGAATGTTGATGTAGT+TGG | 0.530888 | 5_1:-25245830 | Msa0725540:CDS |
| ATGTTTACCCTTGCCATGAA+GGG | 0.535284 | 5_1:-25242445 | Msa0725540:CDS |
| GAAAACTTGTACTTGAAGGT+TGG | 0.535716 | 5_1:-25241908 | Msa0725540:CDS |
| GGTTGAGCAAATATGTGAAA+GGG | 0.538616 | 5_1:-25241859 | Msa0725540:CDS |
| AGGAACCAATGCATGTTTCA+CGG | 0.539644 | 5_1:+25242744 | None:intergenic |
| TTTGGGTGGTAACCAAATCA+TGG | 0.542124 | 5_1:-25244172 | Msa0725540:CDS |
| ATTTCTTTCAGCTATACCAT+TGG | 0.544168 | 5_1:-25242282 | Msa0725540:CDS |
| GACAAGTACAAGATTACAAG+GGG | 0.544839 | 5_1:-25242377 | Msa0725540:CDS |
| TTTGGGATGATTGAAGTGGG+TGG | 0.553049 | 5_1:-25241930 | Msa0725540:CDS |
| AGAAGATGATGGTGAGAGAA+TGG | 0.554875 | 5_1:-25241796 | Msa0725540:CDS |
| GAGAAGGAAGAGATGTGGGA+GGG | 0.555048 | 5_1:-25245801 | Msa0725540:CDS |
| CATATAGTTATGGCAAAGAA+GGG | 0.555846 | 5_1:+25241658 | None:intergenic |
| TGGTTGAGCAAATATGTGAA+AGG | 0.555851 | 5_1:-25241860 | Msa0725540:CDS |
| AGAGAAGGAAGAGATGTGGG+AGG | 0.555899 | 5_1:-25245802 | Msa0725540:CDS |
| CATTACCAACATATTGACAA+TGG | 0.558664 | 5_1:+25245549 | None:intergenic |
| GAGCCATGGTTTGGTCGTTG+GGG | 0.559896 | 5_1:-25242989 | Msa0725540:CDS |
| TCACTAGGTAACCACGTCGT+TGG | 0.562205 | 5_1:-25242539 | Msa0725540:CDS |
| AGGTGGCATTGGAATATCCT+TGG | 0.563815 | 5_1:+25242103 | None:intergenic |
| GATCCTAACTCAACATGCAA+AGG | 0.567181 | 5_1:+25242206 | None:intergenic |
| CTTCCCCGTGAAACATGCAT+TGG | 0.568498 | 5_1:-25242749 | Msa0725540:CDS |
| GGTGGAAAACTTGTACTTGA+AGG | 0.570004 | 5_1:-25241912 | Msa0725540:CDS |
| GGATCCAAAGAAGGGAATTG+TGG | 0.571681 | 5_1:-25241838 | Msa0725540:CDS |
| ACTTAAAGCTAGAAGTTGAA+AGG | 0.578921 | 5_1:-25242040 | Msa0725540:CDS |
| TTACCCTTGCCATGAAGGGT+TGG | 0.581244 | 5_1:-25242441 | Msa0725540:CDS |
| ATAACCAACCCTTCATGGCA+AGG | 0.588536 | 5_1:+25242437 | None:intergenic |
| GAATCCGGTTACAAAAGTGT+TGG | 0.591697 | 5_1:-25242492 | Msa0725540:CDS |
| CGCGCTTATATCGGAGACAC+TGG | 0.594457 | 5_1:-25242584 | Msa0725540:CDS |
| AATGTGATACATTCATAAGG+TGG | 0.594621 | 5_1:+25242086 | None:intergenic |
| TGTGATTGAAGAATCAATTG+AGG | 0.596825 | 5_1:-25245594 | Msa0725540:CDS |
| AAGGATCGAAATGGCAACAC+GGG | 0.601348 | 5_1:-25242675 | Msa0725540:CDS |
| GAAACTGGTTCCAATTTGGG+TGG | 0.601742 | 5_1:-25244186 | Msa0725540:CDS |
| TGTGAAAGGGATCCAAAGAA+GGG | 0.602822 | 5_1:-25241846 | Msa0725540:CDS |
| GAAAGCTGCTGTGATTCAAA+TGG | 0.605077 | 5_1:-25244321 | Msa0725540:CDS |
| ATGCCCTATTAAACATAACT+GGG | 0.605318 | 5_1:+25245744 | None:intergenic |
| TAGTCGAAACAAATTGTCGT+TGG | 0.607261 | 5_1:-25242706 | Msa0725540:CDS |
| ATGTAGTTGGAAACAAGAGA+AGG | 0.608300 | 5_1:-25245817 | Msa0725540:CDS |
| TCACTCTCTTGTCACCCTTG+GGG | 0.608508 | 5_1:-25242807 | Msa0725540:CDS |
| ATGGAACTAAGACTTGTGAA+TGG | 0.611915 | 5_1:-25243025 | Msa0725540:CDS |
| AGAATTATCCTAGCTGCCAA+TGG | 0.615757 | 5_1:+25242266 | None:intergenic |
| TAACCAACCCTTCATGGCAA+GGG | 0.616092 | 5_1:+25242438 | None:intergenic |
| CTTGTACTTGAAGGTTGGCA+TGG | 0.619314 | 5_1:-25241903 | Msa0725540:CDS |
| AAATCCCATTAATCTTCCAA+AGG | 0.619758 | 5_1:-25242847 | Msa0725540:CDS |
| TGGTGTGTGAGTAAGTATAG+TGG | 0.621011 | 5_1:+25242890 | None:intergenic |
| TGTAGTGAAATAAGTCCCCA+AGG | 0.621432 | 5_1:+25242792 | None:intergenic |
| GGCAACACGGGTCATTGTCG+AGG | 0.625213 | 5_1:-25242663 | Msa0725540:CDS |
| TTAGAGGGACATATGATGCA+TGG | 0.628993 | 5_1:-25244258 | Msa0725540:CDS |
| AGCCATGGTTTGGTCGTTGG+GGG | 0.632030 | 5_1:-25242988 | Msa0725540:CDS |
| TGTGGAACTAAAGAAGATGA+TGG | 0.634151 | 5_1:-25241807 | Msa0725540:CDS |
| TCAAGTTGAAATGACCACAT+AGG | 0.634446 | 5_1:+25245653 | None:intergenic |
| TGACACAAAACCAAGTATAG+GGG | 0.634532 | 5_1:-25242309 | Msa0725540:CDS |
| AAAGGATCGAAATGGCAACA+CGG | 0.636312 | 5_1:-25242676 | Msa0725540:CDS |
| AACAAATTAATAGAATTAGA+GGG | 0.638228 | 5_1:-25244273 | Msa0725540:CDS |
| GAATAGCATACAGTGAGCCA+TGG | 0.638270 | 5_1:-25243003 | Msa0725540:CDS |
| ACAAACAACAAGATATACAA+AGG | 0.642821 | 5_1:+25245614 | None:intergenic |
| ACATGTTAGAGCTCAAGTCA+CGG | 0.647934 | 5_1:-25242772 | Msa0725540:CDS |
| GTCTCCGATATAAGCGCGTG+CGG | 0.649774 | 5_1:+25242589 | None:intergenic |
| AATGGTACAATGAATATTAG+GGG | 0.651266 | 5_1:-25244303 | Msa0725540:CDS |
| AACAACAAGATATACAAAGG+TGG | 0.651968 | 5_1:+25245617 | None:intergenic |
| CATGATTGGAATTTGCAATG+TGG | 0.652672 | 5_1:+25242870 | None:intergenic |
| TCATGAGTATTATTTGACCA+AGG | 0.654899 | 5_1:-25242120 | Msa0725540:CDS |
| CCAAGTAGTTTCCAACGACG+TGG | 0.664980 | 5_1:+25242528 | None:intergenic |
| GGACAAGTACAAGATTACAA+GGG | 0.673997 | 5_1:-25242378 | Msa0725540:CDS |
| GAACCAATGCATGTTTCACG+GGG | 0.696558 | 5_1:+25242746 | None:intergenic |
| GTAGTGAAATAAGTCCCCAA+GGG | 0.700987 | 5_1:+25242793 | None:intergenic |
| TCTTATCAAAGACTATGGAG+AGG | 0.706196 | 5_1:-25242231 | Msa0725540:CDS |
| GTACTTGAAGGTTGGCATGG+TGG | 0.707747 | 5_1:-25241900 | Msa0725540:CDS |
| ACAAGTACAAGATTACAAGG+GGG | 0.810721 | 5_1:-25242376 | Msa0725540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATATTCATTTGTATA+TGG | - | chr5_1:25242007-25242026 | Msa0725540:CDS | 10.0% |
| !!! | TAAATATAACATTTTCATTT+GGG | - | chr5_1:25243859-25243878 | Msa0725540:intron | 10.0% |
| !!! | TGGTAATGTTAAAATTAATT+TGG | - | chr5_1:25241961-25241980 | Msa0725540:CDS | 15.0% |
| !! | AAATATTTGTGTAAGAAAAT+AGG | - | chr5_1:25242213-25242232 | Msa0725540:CDS | 15.0% |
| !! | AATATTTGTGTAAGAAAATA+GGG | - | chr5_1:25242214-25242233 | Msa0725540:CDS | 15.0% |
| !!! | CCAAATATTTTTAAATTTTC+GGG | + | chr5_1:25242708-25242727 | None:intergenic | 15.0% |
| !!! | CCCAAATATTTTTAAATTTT+CGG | + | chr5_1:25242709-25242728 | None:intergenic | 15.0% |
| !! | CCGAAAATTTAAAAATATTT+GGG | - | chr5_1:25242706-25242725 | Msa0725540:CDS | 15.0% |
| !! | AAATCATATTTCACTATTTA+GGG | + | chr5_1:25242902-25242921 | None:intergenic | 15.0% |
| !! | AACAAATTAATAGAATTAGA+GGG | - | chr5_1:25243222-25243241 | Msa0725540:intron | 15.0% |
| !! | TCATGTTGAAATTAATTAAA+TGG | + | chr5_1:25243478-25243497 | None:intergenic | 15.0% |
| !! | GTAAAAAAAAATAATATGCT+TGG | - | chr5_1:25243580-25243599 | Msa0725540:intron | 15.0% |
| !!! | GTATATAAAGTAAACATTTT+TGG | - | chr5_1:25243732-25243751 | Msa0725540:intron | 15.0% |
| !!! | AATATTATTTTTTGTACGAA+AGG | + | chr5_1:25243828-25243847 | None:intergenic | 15.0% |
| !!! | GTAAATATAACATTTTCATT+TGG | - | chr5_1:25243858-25243877 | Msa0725540:intron | 15.0% |
| !!! | ATGTTGACATATTTTTTTTA+AGG | + | chr5_1:25243959-25243978 | None:intergenic | 15.0% |
| !! | AAGAGTTAAAAAAAACAAAA+AGG | + | chr5_1:25244075-25244094 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTTTAACTCTT+TGG | - | chr5_1:25244075-25244094 | Msa0725540:intron | 15.0% |
| !!! | TAATTTGTATCAAACATTAT+AGG | - | chr5_1:25244411-25244430 | Msa0725540:intron | 15.0% |
| !! | TAGTAGTAATAATAAAGTTA+AGG | - | chr5_1:25245096-25245115 | Msa0725540:intron | 15.0% |
| !!! | TTTATTGTACAATTTTGTTA+AGG | - | chr5_1:25245329-25245348 | Msa0725540:intron | 15.0% |
| !!! | TTTTTAGGTTCAAGAATTTT+GGG | - | chr5_1:25241717-25241736 | Msa0725540:CDS | 20.0% |
| !! | TTTACTTGAATATGCAAATT+TGG | - | chr5_1:25241796-25241815 | Msa0725540:CDS | 20.0% |
| !! | TTTGGAGAGTAATTTAAAAA+TGG | - | chr5_1:25241814-25241833 | Msa0725540:CDS | 20.0% |
| !! | TTGGAGAGTAATTTAAAAAT+GGG | - | chr5_1:25241815-25241834 | Msa0725540:CDS | 20.0% |
| !! | ATATTTGTGTAAGAAAATAG+GGG | - | chr5_1:25242215-25242234 | Msa0725540:CDS | 20.0% |
| !! | GATTTATTTATGTGTAAATC+AGG | + | chr5_1:25242488-25242507 | None:intergenic | 20.0% |
| !! | AATAAATCCTGAGAATAAAA+TGG | - | chr5_1:25242500-25242519 | Msa0725540:CDS | 20.0% |
| !!! | ATTTATACCATTTTATTCTC+AGG | + | chr5_1:25242510-25242529 | None:intergenic | 20.0% |
| !! | GTAATAACAAAGATATGATA+TGG | + | chr5_1:25242539-25242558 | None:intergenic | 20.0% |
| !! | CCCGAAAATTTAAAAATATT+TGG | - | chr5_1:25242705-25242724 | Msa0725540:CDS | 20.0% |
| !!! | ACATTTTAAGATGAATAAGT+GGG | + | chr5_1:25242779-25242798 | None:intergenic | 20.0% |
| !!! | TACATTTTAAGATGAATAAG+TGG | + | chr5_1:25242780-25242799 | None:intergenic | 20.0% |
| !! | ATAACTTTGCTTGAAATATA+AGG | + | chr5_1:25242842-25242861 | None:intergenic | 20.0% |
| !! | AATCATATTTCACTATTTAG+GGG | + | chr5_1:25242901-25242920 | None:intergenic | 20.0% |
| !! | CAAATCATATTTCACTATTT+AGG | + | chr5_1:25242903-25242922 | None:intergenic | 20.0% |
| !! | AAATGGTACAATGAATATTA+GGG | - | chr5_1:25243191-25243210 | Msa0725540:intron | 20.0% |
| !!! | CTCTAATTCTATTAATTTGT+TGG | + | chr5_1:25243223-25243242 | None:intergenic | 20.0% |
| !! | CAACAAATTAATAGAATTAG+AGG | - | chr5_1:25243221-25243240 | Msa0725540:intron | 20.0% |
| !! | CTTTATATACATTGTATGTT+TGG | + | chr5_1:25243722-25243741 | None:intergenic | 20.0% |
| !!! | AAGTAAACATTTTTGGATAA+TGG | - | chr5_1:25243739-25243758 | Msa0725540:intron | 20.0% |
| !! | TATGTCAACATATTTATTCT+CGG | - | chr5_1:25243968-25243987 | Msa0725540:intron | 20.0% |
| !! | ATTTAAAAAATTAACCGAGT+TGG | + | chr5_1:25244191-25244210 | None:intergenic | 20.0% |
| !! | AAAATAATATAAACCAGAGA+TGG | + | chr5_1:25244219-25244238 | None:intergenic | 20.0% |
| !! | TCAAATAATACTCATGATTA+TGG | + | chr5_1:25245372-25245391 | None:intergenic | 20.0% |
| !!! | GTTTTTAGGTTCAAGAATTT+TGG | - | chr5_1:25241716-25241735 | Msa0725540:CDS | 25.0% |
| !!! | TTTTAGGTTCAAGAATTTTG+GGG | - | chr5_1:25241718-25241737 | Msa0725540:CDS | 25.0% |
| ! | ACAAACAACAAGATATACAA+AGG | + | chr5_1:25241884-25241903 | None:intergenic | 25.0% |
| ! | AATCATGTGACTTACTAATT+AGG | + | chr5_1:25242047-25242066 | None:intergenic | 25.0% |
| ! | TATTTGTGTAAGAAAATAGG+GGG | - | chr5_1:25242216-25242235 | Msa0725540:CDS | 25.0% |
| !! | TTCTAAAAATAAAGATGCCT+AGG | - | chr5_1:25242291-25242310 | Msa0725540:CDS | 25.0% |
| ! | TCTAATTTATACAGTCTCAT+TGG | + | chr5_1:25242352-25242371 | None:intergenic | 25.0% |
| ! | TAACCTCCCTATTATAATAA+TGG | - | chr5_1:25242680-25242699 | Msa0725540:CDS | 25.0% |
| ! | AGTAAAACACTCTAATATAC+AGG | - | chr5_1:25242729-25242748 | Msa0725540:CDS | 25.0% |
| ! | GTAAAACACTCTAATATACA+GGG | - | chr5_1:25242730-25242749 | Msa0725540:CDS | 25.0% |
| !!! | CATTTTAAGATGAATAAGTG+GGG | + | chr5_1:25242778-25242797 | None:intergenic | 25.0% |
| !!! | TTTCAAGCAAAGTTATTTCT+AGG | - | chr5_1:25242846-25242865 | Msa0725540:CDS | 25.0% |
| ! | ATCATATTTCACTATTTAGG+GGG | + | chr5_1:25242900-25242919 | None:intergenic | 25.0% |
| ! | GGTAACATGTATTAGATATA+AGG | + | chr5_1:25243013-25243032 | None:intergenic | 25.0% |
| ! | CTTAATTACATCAAATTGAC+TGG | - | chr5_1:25243061-25243080 | Msa0725540:CDS | 25.0% |
| ! | ACTTCTTATTGCAAATGAAA+TGG | + | chr5_1:25243104-25243123 | None:intergenic | 25.0% |
| ! | CAAATGGTACAATGAATATT+AGG | - | chr5_1:25243190-25243209 | Msa0725540:intron | 25.0% |
| ! | AATGGTACAATGAATATTAG+GGG | - | chr5_1:25243192-25243211 | Msa0725540:intron | 25.0% |
| !!! | TATTTCACTCTAATGGATTT+GGG | - | chr5_1:25243262-25243281 | Msa0725540:intron | 25.0% |
| !!! | TCTTTGTTGTATTCTTTTCA+TGG | - | chr5_1:25243514-25243533 | Msa0725540:intron | 25.0% |
| !!! | CTTTGTTGTATTCTTTTCAT+GGG | - | chr5_1:25243515-25243534 | Msa0725540:intron | 25.0% |
| ! | TATTGCATATGTCAAAATCA+TGG | - | chr5_1:25243608-25243627 | Msa0725540:intron | 25.0% |
| ! | TACTATAGGTAGTATGTATT+CGG | + | chr5_1:25243783-25243802 | None:intergenic | 25.0% |
| ! | ATACATACTACCTATAGTAT+AGG | - | chr5_1:25243784-25243803 | Msa0725540:intron | 25.0% |
| !!! | TCGGTGTTAAATGTTAATAA+CGG | - | chr5_1:25243987-25244006 | Msa0725540:intron | 25.0% |
| !!! | TTTTAACTCTTTGGATCTTA+AGG | - | chr5_1:25244084-25244103 | Msa0725540:intron | 25.0% |
| ! | TTTAACTCTTTGGATCTTAA+GGG | - | chr5_1:25244085-25244104 | Msa0725540:intron | 25.0% |
| !!! | ATTTTTTATATCCCCAAGAA+CGG | - | chr5_1:25244234-25244253 | Msa0725540:CDS | 25.0% |
| ! | CAAAATGTTTCACAATTTCT+TGG | + | chr5_1:25244302-25244321 | None:intergenic | 25.0% |
| !! | CAAGAAATTGTGAAACATTT+TGG | - | chr5_1:25244300-25244319 | Msa0725540:CDS | 25.0% |
| !! | TCTGAATTCAGTTCTTTTTA+AGG | + | chr5_1:25244858-25244877 | None:intergenic | 25.0% |
| ! | TAAAAAGAACTGAATTCAGA+TGG | - | chr5_1:25244858-25244877 | Msa0725540:intron | 25.0% |
| ! | AGATATCTTATCAAAGACTA+TGG | - | chr5_1:25245259-25245278 | Msa0725540:intron | 25.0% |
| ! | TTAAGGAATGTTAACAATGT+AGG | - | chr5_1:25245346-25245365 | Msa0725540:intron | 25.0% |
| ! | TTCAATGTGATACATTCATA+AGG | + | chr5_1:25245415-25245434 | None:intergenic | 25.0% |
| !! | TAGAAGTTGAAAGGAATTTT+AGG | - | chr5_1:25245464-25245483 | Msa0725540:intron | 25.0% |
| !! | AGAAGTTGAAAGGAATTTTA+GGG | - | chr5_1:25245465-25245484 | Msa0725540:intron | 25.0% |
| !!! | GAATTTTAGGGAAATCTATT+GGG | - | chr5_1:25245477-25245496 | Msa0725540:intron | 25.0% |
| !!! | AATTTTAGGGAAATCTATTG+GGG | - | chr5_1:25245478-25245497 | Msa0725540:intron | 25.0% |
| ! | CTTGTGATATTTGTGAAATT+CGG | - | chr5_1:25245725-25245744 | Msa0725540:CDS | 25.0% |
| !! | CTTTTGCATAGAAAAATATG+AGG | + | chr5_1:25245793-25245812 | None:intergenic | 25.0% |
| !! | CTCATATTTTTCTATGCAAA+AGG | - | chr5_1:25245791-25245810 | Msa0725540:CDS | 25.0% |
| ATGTTGAATGTTGATGTAGT+TGG | - | chr5_1:25241665-25241684 | Msa0725540:CDS | 30.0% | |
| GTACCCAGTTATGTTTAATA+GGG | - | chr5_1:25241748-25241767 | Msa0725540:CDS | 30.0% | |
| ATGCCCTATTAAACATAACT+GGG | + | chr5_1:25241754-25241773 | None:intergenic | 30.0% | |
| AACAACAAGATATACAAAGG+TGG | + | chr5_1:25241881-25241900 | None:intergenic | 30.0% | |
| TGTGATTGAAGAATCAATTG+AGG | - | chr5_1:25241901-25241920 | Msa0725540:CDS | 30.0% | |
| CATTACCAACATATTGACAA+TGG | + | chr5_1:25241949-25241968 | None:intergenic | 30.0% | |
| ATTTGTGTAAGAAAATAGGG+GGG | - | chr5_1:25242217-25242236 | Msa0725540:CDS | 30.0% | |
| ACATCTAAATAGTCAGTGTT+TGG | - | chr5_1:25242414-25242433 | Msa0725540:CDS | 30.0% | |
| CATCTAAATAGTCAGTGTTT+GGG | - | chr5_1:25242415-25242434 | Msa0725540:CDS | 30.0% | |
| GAAGTTATTCTCATCTTCAT+AGG | + | chr5_1:25242644-25242663 | None:intergenic | 30.0% | |
| GAACCATTATTATAATAGGG+AGG | + | chr5_1:25242686-25242705 | None:intergenic | 30.0% | |
| CGGGAACCATTATTATAATA+GGG | + | chr5_1:25242689-25242708 | None:intergenic | 30.0% | |
| TCGGGAACCATTATTATAAT+AGG | + | chr5_1:25242690-25242709 | None:intergenic | 30.0% | |
| TCATTTCCTATTACCTTCAA+AGG | - | chr5_1:25243125-25243144 | Msa0725540:intron | 30.0% | |
| !! | GTATTTCACTCTAATGGATT+TGG | - | chr5_1:25243261-25243280 | Msa0725540:intron | 30.0% |
| ACATTGTATGTTTGGTATCA+CGG | + | chr5_1:25243714-25243733 | None:intergenic | 30.0% | |
| ACACTTTCATCCTATACTAT+AGG | + | chr5_1:25243797-25243816 | None:intergenic | 30.0% | |
| !! | CATTTTCATTTGGGTTAATG+AGG | - | chr5_1:25243868-25243887 | Msa0725540:intron | 30.0% |
| ! | ATTTGGGTTAATGAGGTAAA+TGG | - | chr5_1:25243875-25243894 | Msa0725540:intron | 30.0% |
| CGAAATTGTGGGTATTTATA+GGG | + | chr5_1:25243902-25243921 | None:intergenic | 30.0% | |
| TCGAAATTGTGGGTATTTAT+AGG | + | chr5_1:25243903-25243922 | None:intergenic | 30.0% | |
| GAGACTAAAATCGAAATTGT+GGG | + | chr5_1:25243913-25243932 | None:intergenic | 30.0% | |
| AGAGACTAAAATCGAAATTG+TGG | + | chr5_1:25243914-25243933 | None:intergenic | 30.0% | |
| GAACTCTAACACTAATAATC+CGG | - | chr5_1:25244112-25244131 | Msa0725540:intron | 30.0% | |
| ! | TTTTAAATGATCACCATCTC+TGG | - | chr5_1:25244203-25244222 | Msa0725540:CDS | 30.0% |
| GTTGTAAAGATGTAAAGTCA+TGG | + | chr5_1:25244261-25244280 | None:intergenic | 30.0% | |
| !! | AAAAAGTGTCATGCAAAGAT+CGG | - | chr5_1:25244362-25244381 | Msa0725540:CDS | 30.0% |
| ! | TTATTGCTTCTATGGCTTTT+TGG | + | chr5_1:25244577-25244596 | None:intergenic | 30.0% |
| GATTAATGGGATTTCATGAT+TGG | + | chr5_1:25244642-25244661 | None:intergenic | 30.0% | |
| AAATCCCATTAATCTTCCAA+AGG | - | chr5_1:25244648-25244667 | Msa0725540:intron | 30.0% | |
| !!! | GATTTTGTTTTGAAGTCACT+AGG | - | chr5_1:25244941-25244960 | Msa0725540:intron | 30.0% |
| ATTGACACAAAACCAAGTAT+AGG | - | chr5_1:25245184-25245203 | Msa0725540:intron | 30.0% | |
| TTGACACAAAACCAAGTATA+GGG | - | chr5_1:25245185-25245204 | Msa0725540:intron | 30.0% | |
| ATTTCTTTCAGCTATACCAT+TGG | - | chr5_1:25245213-25245232 | Msa0725540:intron | 30.0% | |
| TCATGAGTATTATTTGACCA+AGG | - | chr5_1:25245375-25245394 | Msa0725540:intron | 30.0% | |
| AATGTGATACATTCATAAGG+TGG | + | chr5_1:25245412-25245431 | None:intergenic | 30.0% | |
| ACTTAAAGCTAGAAGTTGAA+AGG | - | chr5_1:25245455-25245474 | Msa0725540:intron | 30.0% | |
| !! | GGAATTTTAGGGAAATCTAT+TGG | - | chr5_1:25245476-25245495 | Msa0725540:intron | 30.0% |
| !! | ATTTTAGGGAAATCTATTGG+GGG | - | chr5_1:25245479-25245498 | Msa0725540:intron | 30.0% |
| GGAATTTGATGAATGCAAAA+GGG | - | chr5_1:25245530-25245549 | Msa0725540:intron | 30.0% | |
| ! | AAAGGGAATGAAATGGTTTT+TGG | - | chr5_1:25245547-25245566 | Msa0725540:intron | 30.0% |
| ! | AAGGGAATGAAATGGTTTTT+GGG | - | chr5_1:25245548-25245567 | Msa0725540:intron | 30.0% |
| TGGTGAAATTGGAATCAATA+TGG | - | chr5_1:25245615-25245634 | Msa0725540:CDS | 30.0% | |
| ATGTAGTTGGAAACAAGAGA+AGG | - | chr5_1:25241678-25241697 | Msa0725540:CDS | 35.0% | |
| !! | TTCAAGAATTTTGGGGAACA+AGG | - | chr5_1:25241725-25241744 | Msa0725540:CDS | 35.0% |
| !! | TCAAGAATTTTGGGGAACAA+GGG | - | chr5_1:25241726-25241745 | Msa0725540:CDS | 35.0% |
| GGTACCCAGTTATGTTTAAT+AGG | - | chr5_1:25241747-25241766 | Msa0725540:CDS | 35.0% | |
| GATGCCCTATTAAACATAAC+TGG | + | chr5_1:25241755-25241774 | None:intergenic | 35.0% | |
| TCATTTCGTGAGAATGTGAA+TGG | - | chr5_1:25241773-25241792 | Msa0725540:CDS | 35.0% | |
| TAAAAATGGGAATGCCTATG+TGG | - | chr5_1:25241828-25241847 | Msa0725540:CDS | 35.0% | |
| !! | TCAAGTTGAAATGACCACAT+AGG | + | chr5_1:25241845-25241864 | None:intergenic | 35.0% |
| TGCAACCATTGTCAATATGT+TGG | - | chr5_1:25241941-25241960 | Msa0725540:CDS | 35.0% | |
| ! | AAACGTTTTCTCCAAGCAAA+TGG | + | chr5_1:25242124-25242143 | None:intergenic | 35.0% |
| TCTGCAATATACTTTCACCT+AGG | + | chr5_1:25242311-25242330 | None:intergenic | 35.0% | |
| ! | GACTAATCTTTCAAGTCTTG+TGG | + | chr5_1:25242443-25242462 | None:intergenic | 35.0% |
| AAAAAGTTCCCCAAAGAGAA+TGG | - | chr5_1:25242605-25242624 | Msa0725540:CDS | 35.0% | |
| TTATTCCCACCATTCTCTTT+GGG | + | chr5_1:25242617-25242636 | None:intergenic | 35.0% | |
| TTTATTCCCACCATTCTCTT+TGG | + | chr5_1:25242618-25242637 | None:intergenic | 35.0% | |
| TCTAATACATGTTACCATGC+TGG | - | chr5_1:25243017-25243036 | Msa0725540:CDS | 35.0% | |
| TTAAAAGTGATCAACCAGCA+TGG | + | chr5_1:25243034-25243053 | None:intergenic | 35.0% | |
| CATCAAATTGACTGGAATTC+AGG | - | chr5_1:25243069-25243088 | Msa0725540:intron | 35.0% | |
| CATGGTGTATTTCACTCTAA+TGG | - | chr5_1:25243255-25243274 | Msa0725540:intron | 35.0% | |
| ! | TTTGCTATGTGTCAATGGAT+TGG | - | chr5_1:25243287-25243306 | Msa0725540:intron | 35.0% |
| ! | ATTGGAAACTGGTTCCAATT+TGG | - | chr5_1:25243305-25243324 | Msa0725540:intron | 35.0% |
| ! | TTGGAAACTGGTTCCAATTT+GGG | - | chr5_1:25243306-25243325 | Msa0725540:intron | 35.0% |
| ! | GTAACCAAATCATGGAGTTT+TGG | - | chr5_1:25243331-25243350 | Msa0725540:intron | 35.0% |
| GATTCCAAAACTCCATGATT+TGG | + | chr5_1:25243338-25243357 | None:intergenic | 35.0% | |
| !!! | TTTTGGAATCGTTTGTGCAA+TGG | - | chr5_1:25243348-25243367 | Msa0725540:intron | 35.0% |
| CAGTATCATCACAAAATGTG+TGG | + | chr5_1:25243397-25243416 | None:intergenic | 35.0% | |
| AACACTAATAATCCGGAGTT+CGG | - | chr5_1:25244119-25244138 | Msa0725540:intron | 35.0% | |
| AATGACACGTCACAAAAAAG+AGG | - | chr5_1:25244446-25244465 | Msa0725540:intron | 35.0% | |
| ATGGAACTAAGACTTGTGAA+TGG | - | chr5_1:25244470-25244489 | Msa0725540:intron | 35.0% | |
| ! | AAATTTGGTCGAGGATGTTT+TGG | - | chr5_1:25244533-25244552 | Msa0725540:intron | 35.0% |
| CATGCTTCTTATTGCTTCTA+TGG | + | chr5_1:25244585-25244604 | None:intergenic | 35.0% | |
| CATGATTGGAATTTGCAATG+TGG | + | chr5_1:25244628-25244647 | None:intergenic | 35.0% | |
| ! | GGTACCTTTGGAAGATTAAT+GGG | + | chr5_1:25244655-25244674 | None:intergenic | 35.0% |
| ! | TGGTACCTTTGGAAGATTAA+TGG | + | chr5_1:25244656-25244675 | None:intergenic | 35.0% |
| ! | ACGACAATTTGTTTCGACTA+AGG | + | chr5_1:25244789-25244808 | None:intergenic | 35.0% |
| TAGTCGAAACAAATTGTCGT+TGG | - | chr5_1:25244789-25244808 | Msa0725540:intron | 35.0% | |
| ! | TACTCCAACACTTTTGTAAC+CGG | + | chr5_1:25245010-25245029 | None:intergenic | 35.0% |
| AGGACAAGTACAAGATTACA+AGG | - | chr5_1:25245116-25245135 | Msa0725540:intron | 35.0% | |
| GGACAAGTACAAGATTACAA+GGG | - | chr5_1:25245117-25245136 | Msa0725540:intron | 35.0% | |
| GACAAGTACAAGATTACAAG+GGG | - | chr5_1:25245118-25245137 | Msa0725540:intron | 35.0% | |
| ACAAGTACAAGATTACAAGG+GGG | - | chr5_1:25245119-25245138 | Msa0725540:intron | 35.0% | |
| TGACACAAAACCAAGTATAG+GGG | - | chr5_1:25245186-25245205 | Msa0725540:intron | 35.0% | |
| TCTTATCAAAGACTATGGAG+AGG | - | chr5_1:25245264-25245283 | Msa0725540:intron | 35.0% | |
| ATACATTCATAAGGTGGCAT+TGG | + | chr5_1:25245406-25245425 | None:intergenic | 35.0% | |
| GCATTCATCAAATTCCCATT+TGG | + | chr5_1:25245526-25245545 | None:intergenic | 35.0% | |
| GGGAATTTGATGAATGCAAA+AGG | - | chr5_1:25245529-25245548 | Msa0725540:intron | 35.0% | |
| GAATGCAAAAGGGAATGAAA+TGG | - | chr5_1:25245540-25245559 | Msa0725540:intron | 35.0% | |
| !!! | GTTTTTGGGATGATTGAAGT+GGG | - | chr5_1:25245562-25245581 | Msa0725540:CDS | 35.0% |
| GAAAACTTGTACTTGAAGGT+TGG | - | chr5_1:25245587-25245606 | Msa0725540:CDS | 35.0% | |
| TGGTTGAGCAAATATGTGAA+AGG | - | chr5_1:25245635-25245654 | Msa0725540:CDS | 35.0% | |
| GGTTGAGCAAATATGTGAAA+GGG | - | chr5_1:25245636-25245655 | Msa0725540:CDS | 35.0% | |
| TGTGGAACTAAAGAAGATGA+TGG | - | chr5_1:25245688-25245707 | Msa0725540:CDS | 35.0% | |
| TGAGGAACTTCTTCATCATT+TGG | + | chr5_1:25245775-25245794 | None:intergenic | 35.0% | |
| AACAAGAGAAGGAAGAGATG+TGG | - | chr5_1:25241689-25241708 | Msa0725540:CDS | 40.0% | |
| ACAAGAGAAGGAAGAGATGT+GGG | - | chr5_1:25241690-25241709 | Msa0725540:CDS | 40.0% | |
| ! | TTTGAAGCTCACAACTACAC+TGG | + | chr5_1:25242099-25242118 | None:intergenic | 40.0% |
| AGCTTCAAACTCCATTTGCT+TGG | - | chr5_1:25242110-25242129 | Msa0725540:CDS | 40.0% | |
| TATTCCCACCATTCTCTTTG+GGG | + | chr5_1:25242616-25242635 | None:intergenic | 40.0% | |
| CACTCTAATATACAGGGATC+CGG | - | chr5_1:25242736-25242755 | Msa0725540:CDS | 40.0% | |
| ACTCTAATATACAGGGATCC+GGG | - | chr5_1:25242737-25242756 | Msa0725540:CDS | 40.0% | |
| AAATTGACTGGAATTCAGGC+TGG | - | chr5_1:25243073-25243092 | Msa0725540:intron | 40.0% | |
| AATTGACTGGAATTCAGGCT+GGG | - | chr5_1:25243074-25243093 | Msa0725540:intron | 40.0% | |
| ! | GTGTCTCCTTTGAAGGTAAT+AGG | + | chr5_1:25243134-25243153 | None:intergenic | 40.0% |
| CTACTTAGTGTCTCCTTTGA+AGG | + | chr5_1:25243141-25243160 | None:intergenic | 40.0% | |
| GAAAGCTGCTGTGATTCAAA+TGG | - | chr5_1:25243174-25243193 | Msa0725540:intron | 40.0% | |
| TTAGAGGGACATATGATGCA+TGG | - | chr5_1:25243237-25243256 | Msa0725540:intron | 40.0% | |
| !! | TGTGTCAATGGATTGGAAAC+TGG | - | chr5_1:25243294-25243313 | Msa0725540:intron | 40.0% |
| ! | GATTTGGTTACCACCCAAAT+TGG | + | chr5_1:25243322-25243341 | None:intergenic | 40.0% |
| TTTGGGTGGTAACCAAATCA+TGG | - | chr5_1:25243323-25243342 | Msa0725540:intron | 40.0% | |
| TTGTATGTTTGGTATCACGG+TGG | + | chr5_1:25243711-25243730 | None:intergenic | 40.0% | |
| CTCAATGCACACTATTGAGA+TGG | - | chr5_1:25244041-25244060 | Msa0725540:intron | 40.0% | |
| TTCCACTCATGAATCCAACT+CGG | - | chr5_1:25244174-25244193 | Msa0725540:CDS | 40.0% | |
| TAAAGTCATGGACCGTTCTT+GGG | + | chr5_1:25244249-25244268 | None:intergenic | 40.0% | |
| TGGTGTGTGAGTAAGTATAG+TGG | + | chr5_1:25244608-25244627 | None:intergenic | 40.0% | |
| !! | CAGAAAGTGTTTGGTACCTT+TGG | + | chr5_1:25244667-25244686 | None:intergenic | 40.0% |
| !! | GAGAGTGATCAGAAAGTGTT+TGG | + | chr5_1:25244676-25244695 | None:intergenic | 40.0% |
| GTAGTGAAATAAGTCCCCAA+GGG | + | chr5_1:25244705-25244724 | None:intergenic | 40.0% | |
| TGTAGTGAAATAAGTCCCCA+AGG | + | chr5_1:25244706-25244725 | None:intergenic | 40.0% | |
| ACATGTTAGAGCTCAAGTCA+CGG | - | chr5_1:25244723-25244742 | Msa0725540:intron | 40.0% | |
| AGGAACCAATGCATGTTTCA+CGG | + | chr5_1:25244754-25244773 | None:intergenic | 40.0% | |
| ! | ATTGTCGTTGGTCTCCTAAA+AGG | - | chr5_1:25244801-25244820 | Msa0725540:intron | 40.0% |
| GTCTCCTAAAAGGATCGAAA+TGG | - | chr5_1:25244811-25244830 | Msa0725540:intron | 40.0% | |
| !! | GTTGCCATTTCGATCCTTTT+AGG | + | chr5_1:25244818-25244837 | None:intergenic | 40.0% |
| AAAGGATCGAAATGGCAACA+CGG | - | chr5_1:25244819-25244838 | Msa0725540:intron | 40.0% | |
| ! | GAATCCGGTTACAAAAGTGT+TGG | - | chr5_1:25245003-25245022 | Msa0725540:intron | 40.0% |
| AATGTTTACCCTTGCCATGA+AGG | - | chr5_1:25245049-25245068 | Msa0725540:intron | 40.0% | |
| ATGTTTACCCTTGCCATGAA+GGG | - | chr5_1:25245050-25245069 | Msa0725540:intron | 40.0% | |
| TACTCATAACCAACCCTTCA+TGG | + | chr5_1:25245066-25245085 | None:intergenic | 40.0% | |
| AGAAATTCTGCCCCTATACT+TGG | + | chr5_1:25245199-25245218 | None:intergenic | 40.0% | |
| AGAATTATCCTAGCTGCCAA+TGG | + | chr5_1:25245232-25245251 | None:intergenic | 40.0% | |
| GTTCCTTTGCATGTTGAGTT+AGG | - | chr5_1:25245286-25245305 | Msa0725540:intron | 40.0% | |
| GATCCTAACTCAACATGCAA+AGG | + | chr5_1:25245292-25245311 | None:intergenic | 40.0% | |
| !! | AGTTTTGTGGTGCAACCAAA+TGG | - | chr5_1:25245508-25245527 | Msa0725540:intron | 40.0% |
| ! | GTTTTGTGGTGCAACCAAAT+GGG | - | chr5_1:25245509-25245528 | Msa0725540:intron | 40.0% |
| !!! | GGTTTTTGGGATGATTGAAG+TGG | - | chr5_1:25245561-25245580 | Msa0725540:CDS | 40.0% |
| GGTGGAAAACTTGTACTTGA+AGG | - | chr5_1:25245583-25245602 | Msa0725540:CDS | 40.0% | |
| ATGTGAAAGGGATCCAAAGA+AGG | - | chr5_1:25245648-25245667 | Msa0725540:CDS | 40.0% | |
| TGTGAAAGGGATCCAAAGAA+GGG | - | chr5_1:25245649-25245668 | Msa0725540:CDS | 40.0% | |
| ! | AGAAGATGATGGTGAGAGAA+TGG | - | chr5_1:25245699-25245718 | Msa0725540:CDS | 40.0% |
| ! | AGAGATGTGGGAGGGTTTTT+AGG | - | chr5_1:25241702-25241721 | Msa0725540:CDS | 45.0% |
| !!! | GCTCACAACTACACTGGTTT+TGG | + | chr5_1:25242093-25242112 | None:intergenic | 45.0% |
| AAGTTCCCCAAAGAGAATGG+TGG | - | chr5_1:25242608-25242627 | Msa0725540:CDS | 45.0% | |
| AGTTCCCCAAAGAGAATGGT+GGG | - | chr5_1:25242609-25242628 | Msa0725540:CDS | 45.0% | |
| CTCTAATATACAGGGATCCG+GGG | - | chr5_1:25242738-25242757 | Msa0725540:CDS | 45.0% | |
| ATTGACTGGAATTCAGGCTG+GGG | - | chr5_1:25243075-25243094 | Msa0725540:intron | 45.0% | |
| !! | GGGCATTTGCTATGTGTCAA+TGG | - | chr5_1:25243282-25243301 | Msa0725540:intron | 45.0% |
| ! | GAAACTGGTTCCAATTTGGG+TGG | - | chr5_1:25243309-25243328 | Msa0725540:intron | 45.0% |
| !! | TGTGCAATGGATTGCAAGCA+AGG | - | chr5_1:25243361-25243380 | Msa0725540:intron | 45.0% |
| ! | AATCCGGAGTTCGGTTTGAA+AGG | - | chr5_1:25244128-25244147 | Msa0725540:intron | 45.0% |
| CTTCCTTTCAAACCGAACTC+CGG | + | chr5_1:25244134-25244153 | None:intergenic | 45.0% | |
| ! | AACCGAGTTGGATTCATGAG+TGG | + | chr5_1:25244179-25244198 | None:intergenic | 45.0% |
| AAAGTCATGGACCGTTCTTG+GGG | + | chr5_1:25244248-25244267 | None:intergenic | 45.0% | |
| GTAAAGTCATGGACCGTTCT+TGG | + | chr5_1:25244250-25244269 | None:intergenic | 45.0% | |
| CACGTCACAAAAAAGAGGCA+TGG | - | chr5_1:25244451-25244470 | Msa0725540:intron | 45.0% | |
| GAATAGCATACAGTGAGCCA+TGG | - | chr5_1:25244492-25244511 | Msa0725540:intron | 45.0% | |
| ATCACTCTCTTGTCACCCTT+GGG | - | chr5_1:25244687-25244706 | Msa0725540:intron | 45.0% | |
| GAACCAATGCATGTTTCACG+GGG | + | chr5_1:25244752-25244771 | None:intergenic | 45.0% | |
| GGAACCAATGCATGTTTCAC+GGG | + | chr5_1:25244753-25244772 | None:intergenic | 45.0% | |
| AAGGATCGAAATGGCAACAC+GGG | - | chr5_1:25244820-25244839 | Msa0725540:intron | 45.0% | |
| !! | TATCGGAGACACTGGTTTGT+TGG | - | chr5_1:25244919-25244938 | Msa0725540:intron | 45.0% |
| TAACCAACCCTTCATGGCAA+GGG | + | chr5_1:25245060-25245079 | None:intergenic | 45.0% | |
| ATAACCAACCCTTCATGGCA+AGG | + | chr5_1:25245061-25245080 | None:intergenic | 45.0% | |
| TACAAGGGGGCAACTTATGA+AGG | - | chr5_1:25245132-25245151 | Msa0725540:intron | 45.0% | |
| ! | AGGTGGCATTGGAATATCCT+TGG | + | chr5_1:25245395-25245414 | None:intergenic | 45.0% |
| GGGAAATCTATTGGGGGTTA+AGG | - | chr5_1:25245485-25245504 | Msa0725540:intron | 45.0% | |
| ! | TTGGGGGTTAAGGAGTTTTG+TGG | - | chr5_1:25245495-25245514 | Msa0725540:intron | 45.0% |
| ! | TTTGGGATGATTGAAGTGGG+TGG | - | chr5_1:25245565-25245584 | Msa0725540:CDS | 45.0% |
| CTTGTACTTGAAGGTTGGCA+TGG | - | chr5_1:25245592-25245611 | Msa0725540:CDS | 45.0% | |
| GGATCCAAAGAAGGGAATTG+TGG | - | chr5_1:25245657-25245676 | Msa0725540:CDS | 45.0% | |
| CACTCCACAATTCCCTTCTT+TGG | + | chr5_1:25245664-25245683 | None:intergenic | 45.0% | |
| GGAATTGTGGAGTGCATTTG+TGG | - | chr5_1:25245670-25245689 | Msa0725540:CDS | 45.0% | |
| AGAGAAGGAAGAGATGTGGG+AGG | - | chr5_1:25241693-25241712 | Msa0725540:CDS | 50.0% | |
| GAGAAGGAAGAGATGTGGGA+GGG | - | chr5_1:25241694-25241713 | Msa0725540:CDS | 50.0% | |
| AATATACAGGGATCCGGGGT+TGG | - | chr5_1:25242742-25242761 | Msa0725540:CDS | 50.0% | |
| GCATACAGTGAGCCATGGTT+TGG | - | chr5_1:25244497-25244516 | Msa0725540:intron | 50.0% | |
| !! | TGAGCCATGGTTTGGTCGTT+GGG | - | chr5_1:25244505-25244524 | Msa0725540:intron | 50.0% |
| ! | GGTCGTTGGGGGTACAAATT+TGG | - | chr5_1:25244518-25244537 | Msa0725540:intron | 50.0% |
| ! | TGGGGGTACAAATTTGGTCG+AGG | - | chr5_1:25244524-25244543 | Msa0725540:intron | 50.0% |
| GATCACTCTCTTGTCACCCT+TGG | - | chr5_1:25244686-25244705 | Msa0725540:intron | 50.0% | |
| TCACTCTCTTGTCACCCTTG+GGG | - | chr5_1:25244688-25244707 | Msa0725540:intron | 50.0% | |
| CTTCCCCGTGAAACATGCAT+TGG | - | chr5_1:25244746-25244765 | Msa0725540:intron | 50.0% | |
| TCACTAGGTAACCACGTCGT+TGG | - | chr5_1:25244956-25244975 | Msa0725540:intron | 50.0% | |
| CCAAGTAGTTTCCAACGACG+TGG | + | chr5_1:25244970-25244989 | None:intergenic | 50.0% | |
| CCACGTCGTTGGAAACTACT+TGG | - | chr5_1:25244967-25244986 | Msa0725540:intron | 50.0% | |
| GGTTCGTCGAAGCTTGAATC+CGG | - | chr5_1:25244988-25245007 | Msa0725540:intron | 50.0% | |
| TTACCCTTGCCATGAAGGGT+TGG | - | chr5_1:25245054-25245073 | Msa0725540:intron | 50.0% | |
| CAGCTATACCATTGGCAGCT+AGG | - | chr5_1:25245221-25245240 | Msa0725540:intron | 50.0% | |
| GTACTTGAAGGTTGGCATGG+TGG | - | chr5_1:25245595-25245614 | Msa0725540:CDS | 50.0% | |
| ! | GGTTGGCATGGTGGTGAAAT+TGG | - | chr5_1:25245604-25245623 | Msa0725540:CDS | 50.0% |
| AGTGACGTGACAGTGACACG+TGG | - | chr5_1:25244012-25244031 | Msa0725540:intron | 55.0% | |
| !! | GTGAGCCATGGTTTGGTCGT+TGG | - | chr5_1:25244504-25244523 | Msa0725540:intron | 55.0% |
| !! | GAGCCATGGTTTGGTCGTTG+GGG | - | chr5_1:25244506-25244525 | Msa0725540:intron | 55.0% |
| !! | AGCCATGGTTTGGTCGTTGG+GGG | - | chr5_1:25244507-25244526 | Msa0725540:intron | 55.0% |
| TACCCCCAACGACCAAACCA+TGG | + | chr5_1:25244512-25244531 | None:intergenic | 55.0% | |
| ! | GACTAAGGCGCTTGTGCTGA+AGG | + | chr5_1:25244774-25244793 | None:intergenic | 55.0% |
| GATGCCGCACGCGCTTATAT+CGG | - | chr5_1:25244902-25244921 | Msa0725540:intron | 55.0% | |
| GTCTCCGATATAAGCGCGTG+CGG | + | chr5_1:25244909-25244928 | None:intergenic | 55.0% | |
| CGCGCTTATATCGGAGACAC+TGG | - | chr5_1:25244911-25244930 | Msa0725540:intron | 55.0% | |
| GGCAACACGGGTCATTGTCG+AGG | - | chr5_1:25244832-25244851 | Msa0725540:intron | 60.0% | |
| AGGGATCCGGGGTTGGAGCT+CGG | - | chr5_1:25242749-25242768 | Msa0725540:CDS | 65.0% | |
| GGGTATCCGAGCTCCAACCC+CGG | + | chr5_1:25242758-25242777 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25241665 | 25245852 | 25241665 | ID=Msa0725540;Name=Msa0725540 |
| chr5_1 | mRNA | 25241665 | 25245852 | 25241665 | ID=Msa0725540-mRNA-1;Parent=Msa0725540;Name=Msa0725540-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|0|0|1|1|1|3|0|669 |
| chr5_1 | exon | 25245555 | 25245852 | 25245555 | ID=Msa0725540-mRNA-1:exon:9147;Parent=Msa0725540-mRNA-1 |
| chr5_1 | exon | 25244135 | 25244426 | 25244135 | ID=Msa0725540-mRNA-1:exon:9146;Parent=Msa0725540-mRNA-1 |
| chr5_1 | exon | 25241665 | 25243084 | 25241665 | ID=Msa0725540-mRNA-1:exon:9145;Parent=Msa0725540-mRNA-1 |
| chr5_1 | CDS | 25245555 | 25245852 | 25245555 | ID=Msa0725540-mRNA-1:cds;Parent=Msa0725540-mRNA-1 |
| chr5_1 | CDS | 25244135 | 25244426 | 25244135 | ID=Msa0725540-mRNA-1:cds;Parent=Msa0725540-mRNA-1 |
| chr5_1 | CDS | 25241665 | 25243084 | 25241665 | ID=Msa0725540-mRNA-1:cds;Parent=Msa0725540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
