AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0725560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725560 MtrunA17_Chr5g0417211 78.836 378 29 4 25 399 81 410 0.0 571
Msa0725560 MtrunA17_Chr5g0417281 60.820 439 101 8 25 395 80 515 6.00e-168 480
Msa0725560 MtrunA17_Chr5g0436761 60.000 385 127 7 25 389 81 458 6.70e-146 422
Msa0725560 MtrunA17_Chr2g0289221 73.391 233 59 3 25 255 90 321 1.44e-113 336
Msa0725560 MtrunA17_Chr5g0424931 47.333 450 146 13 26 395 89 527 3.97e-111 335
Msa0725560 MtrunA17_Chr2g0277461 46.193 394 160 11 25 393 84 450 9.45e-99 301
Msa0725560 MtrunA17_Chr1g0178011 45.119 379 173 16 26 387 82 442 5.14e-83 261
Msa0725560 MtrunA17_Chr3g0115271 42.328 378 162 11 25 354 86 455 6.49e-83 265
Msa0725560 MtrunA17_Chr2g0326761 37.437 398 178 12 26 363 78 464 6.27e-68 228
Msa0725560 MtrunA17_Chr1g0181211 39.943 348 143 8 54 344 127 465 5.26e-66 222
Msa0725560 MtrunA17_Chr4g0028971 39.503 362 138 11 54 349 107 453 6.84e-65 219
Msa0725560 MtrunA17_Chr1g0199681 37.922 385 167 13 25 347 159 533 5.80e-64 217
Msa0725560 MtrunA17_Chr5g0424741 40.000 400 159 15 26 350 82 475 3.28e-63 211
Msa0725560 MtrunA17_Chr5g0424801 44.521 292 132 11 26 301 82 359 3.24e-61 202
Msa0725560 MtrunA17_Chr5g0425261 43.810 315 136 13 26 324 82 371 1.59e-57 192
Msa0725560 MtrunA17_Chr2g0277531 43.644 236 118 7 26 255 92 318 9.30e-55 183
Msa0725560 MtrunA17_Chr7g0264171 35.196 358 161 11 55 350 130 478 1.98e-53 187
Msa0725560 MtrunA17_Chr7g0264161 42.326 215 106 5 55 255 91 301 4.41e-50 171
Msa0725560 MtrunA17_Chr2g0282961 35.470 234 130 6 58 276 160 387 2.60e-42 156
Msa0725560 MtrunA17_Chr4g0046371 35.897 234 128 7 58 276 150 376 1.25e-41 155
Msa0725560 MtrunA17_Chr4g0009751 32.526 289 170 8 25 295 90 371 6.67e-38 144
Msa0725560 MtrunA17_Chr4g0029671 37.647 255 136 9 58 295 168 416 6.91e-38 145
Msa0725560 MtrunA17_Chr2g0276781 35.987 314 165 13 1 295 78 374 1.36e-37 144
Msa0725560 MtrunA17_Chr2g0326281 34.448 299 156 11 58 324 170 460 1.66e-37 144
Msa0725560 MtrunA17_Chr2g0285461 33.977 259 141 9 58 298 129 375 3.73e-37 143
Msa0725560 MtrunA17_Chr8g0389081 34.874 238 133 7 58 279 138 369 1.38e-36 142
Msa0725560 MtrunA17_Chr8g0376771 34.241 257 143 9 58 298 128 374 4.94e-36 140
Msa0725560 MtrunA17_Chr5g0425661 53.226 124 55 1 26 146 104 227 1.08e-35 131
Msa0725560 MtrunA17_Chr5g0433301 34.241 257 143 9 58 298 130 376 1.13e-35 139
Msa0725560 MtrunA17_Chr7g0239061 30.729 384 227 17 1 364 69 433 2.12e-35 137
Msa0725560 MtrunA17_Chr8g0385791 33.591 259 150 7 53 295 159 411 2.53e-35 138
Msa0725560 MtrunA17_Chr3g0109391 33.852 257 144 9 58 298 132 378 5.88e-35 137
Msa0725560 MtrunA17_Chr1g0156321 35.021 237 128 8 58 276 148 376 2.88e-34 135
Msa0725560 MtrunA17_Chr2g0301251 32.203 236 139 6 58 278 128 357 5.72e-33 131
Msa0725560 MtrunA17_Chr8g0346711 36.170 235 125 9 58 276 133 358 5.78e-33 130
Msa0725560 MtrunA17_Chr4g0070181 31.727 249 148 7 58 290 128 370 7.25e-33 130
Msa0725560 MtrunA17_Chr5g0425651 46.400 125 55 4 174 290 2 122 9.52e-28 106
Msa0725560 MtrunA17_Chr8g0356211 29.044 272 162 9 69 318 7 269 1.07e-24 103
Msa0725560 MtrunA17_Chr5g0424791 43.411 129 61 5 26 152 33 151 9.14e-20 85.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0725560 AT1G77850.1 36.709 395 192 11 9 349 61 451 2.25e-72 237
Msa0725560 AT1G77850.2 36.524 397 190 11 9 349 61 451 2.85e-72 237
Msa0725560 AT4G30080.1 39.628 376 164 10 25 345 84 451 2.38e-67 226
Msa0725560 AT2G28350.2 42.617 298 112 9 54 298 113 404 7.14e-62 211
Msa0725560 AT2G28350.1 41.346 312 124 9 40 298 99 404 1.14e-61 211
Msa0725560 AT2G33860.2 37.607 234 125 7 58 276 4 231 2.06e-42 154
Msa0725560 AT2G33860.1 37.607 234 125 7 58 276 161 388 1.95e-41 154
Msa0725560 AT1G35520.1 36.177 293 152 11 18 295 100 372 1.81e-39 149
Msa0725560 AT5G60450.2 38.528 231 126 7 58 276 155 381 8.84e-39 148
Msa0725560 AT5G60450.1 38.528 231 126 7 58 276 179 405 9.05e-39 148
Msa0725560 AT4G23980.2 32.979 282 156 12 15 280 82 346 2.93e-37 143
Msa0725560 AT4G23980.1 32.979 282 156 12 15 280 82 346 3.15e-37 143
Msa0725560 AT5G37020.3 32.941 255 149 8 58 298 33 279 6.38e-37 142
Msa0725560 AT5G37020.1 32.941 255 149 8 58 298 128 374 7.50e-37 142
Msa0725560 AT5G37020.2 32.941 255 149 8 58 298 128 374 7.77e-37 142
Msa0725560 AT1G34390.1 34.014 294 155 12 18 295 100 370 3.22e-36 140
Msa0725560 AT1G34410.1 36.680 259 139 10 53 295 123 372 3.74e-36 139
Msa0725560 AT1G19850.2 36.170 235 128 8 58 276 149 377 1.59e-35 139
Msa0725560 AT3G61830.2 36.910 233 125 7 58 276 79 303 1.72e-35 137
Msa0725560 AT1G19850.1 36.170 235 128 8 58 276 160 388 1.75e-35 139
Msa0725560 AT2G46530.2 37.131 237 125 9 58 279 39 266 1.77e-35 137
Msa0725560 AT3G61830.1 36.910 233 125 7 58 276 130 354 2.79e-35 137
Msa0725560 AT1G30330.3 33.074 257 146 8 58 298 131 377 4.33e-35 137
Msa0725560 AT1G30330.2 33.074 257 146 8 58 298 131 377 4.33e-35 137
Msa0725560 AT1G30330.1 33.074 257 146 8 58 298 129 375 4.70e-35 137
Msa0725560 AT2G46530.1 37.131 237 125 9 58 279 126 353 4.83e-35 136
Msa0725560 AT1G35240.1 35.521 259 142 9 53 295 123 372 6.31e-35 136
Msa0725560 AT2G46530.3 37.131 237 125 9 58 279 147 374 7.37e-35 136
Msa0725560 AT1G34310.1 33.667 300 150 12 18 295 100 372 8.03e-35 135
Msa0725560 AT1G59750.4 33.566 286 167 9 25 293 93 372 1.09e-34 136
Msa0725560 AT1G59750.2 33.566 286 167 9 25 293 93 372 1.22e-34 135
Msa0725560 AT1G59750.1 33.566 286 167 9 25 293 93 372 1.47e-34 135
Msa0725560 AT1G59750.3 33.566 286 167 9 25 293 93 372 1.47e-34 135
Msa0725560 AT5G62000.2 34.363 259 148 8 53 295 161 413 2.26e-34 135
Msa0725560 AT5G62000.5 34.363 259 148 8 53 295 161 413 2.26e-34 135
Msa0725560 AT5G62000.3 34.363 259 148 8 53 295 161 413 2.26e-34 135
Msa0725560 AT5G62000.1 34.363 259 148 8 53 295 161 413 2.26e-34 135
Msa0725560 AT5G62000.4 34.363 259 148 8 53 295 161 413 2.96e-34 135
Msa0725560 AT1G35540.1 34.296 277 140 11 18 276 100 352 5.86e-34 133
Msa0725560 AT1G19220.1 33.071 254 148 8 58 295 128 375 4.90e-33 132
Msa0725560 AT5G20730.3 31.873 251 150 6 58 292 129 374 1.66e-32 130
Msa0725560 AT5G20730.1 31.873 251 150 6 58 292 129 374 1.88e-32 130
Msa0725560 AT5G20730.2 32.271 251 148 7 58 292 129 373 5.41e-32 129
Msa0725560 AT1G34170.1 33.333 237 130 10 58 276 126 352 2.61e-28 116
Msa0725560 AT1G34170.2 33.040 227 118 10 58 276 126 326 3.23e-23 101
Msa0725560 AT1G34170.3 33.040 227 118 10 58 276 126 326 4.62e-23 101
Msa0725560 AT1G43950.1 38.971 136 73 4 23 157 96 222 6.98e-18 82.4
Msa0725560 ATMG00940.1 37.209 129 70 4 129 251 21 144 2.42e-17 79.3

Find 94 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCAATATCATAGGTTAAT+TGG 0.114277 5_1:+25294803 Msa0725560:intron
AGGATTCCATTTAATCTTAA+TGG 0.197798 5_1:-25294150 None:intergenic
CCTGGTTCAATTATGTTATT+TGG 0.201738 5_1:+25295138 Msa0725560:CDS
GAAGAATGAAATTCTATCTT+TGG 0.239725 5_1:-25294991 None:intergenic
CGAACCAGCTGCGAAACTTT+AGG 0.296884 5_1:-25294832 None:intergenic
AGGAAGCCATTAAGATTAAA+TGG 0.321373 5_1:+25294144 Msa0725560:CDS
GGAATTGGCCGATAAGAAAA+TGG 0.351667 5_1:+25294052 Msa0725560:CDS
GGTCGTTAGTGACGGGAGTT+AGG 0.352092 5_1:-25293608 None:intergenic
TGTTACTGAGGCCGTGGAAT+TGG 0.365443 5_1:+25294037 Msa0725560:CDS
GTCAATATCATAGGTTAATT+GGG 0.372441 5_1:+25294804 Msa0725560:intron
CACTCCAGTTGGTGGTGATC+AGG 0.388147 5_1:-25293881 None:intergenic
ATTCAACGATGTTTCATTGA+AGG 0.410291 5_1:-25295025 None:intergenic
TTCGAGTGCGAGTCAGTCCT+TGG 0.414064 5_1:+25294851 Msa0725560:CDS
GGGGTTGACGTTGTTTCCTC+TGG 0.416086 5_1:+25293672 Msa0725560:CDS
GGAATCCGTCGGCAGAAGTT+TGG 0.417648 5_1:+25293987 Msa0725560:CDS
AGCATGCGCCATGGACGATT+AGG 0.434996 5_1:-25294260 None:intergenic
TGCTTTGCTCGATGACATGC+AGG 0.446126 5_1:+25295053 Msa0725560:CDS
TGCCTTACACAATGATATAG+AGG 0.453622 5_1:+25294954 Msa0725560:CDS
GAATGTTTAATTCTCAATCC+AGG 0.457999 5_1:-25294170 None:intergenic
TTCGTGAAGACGAAGATGAC+GGG 0.459706 5_1:+25293652 Msa0725560:CDS
TGTAGTTAATGCTAAGGTTG+TGG 0.462109 5_1:+25294121 Msa0725560:CDS
ATTAAGATTAAATGGAATCC+TGG 0.463670 5_1:+25294152 Msa0725560:CDS
ATGAAATTCTATCTTTGGAA+TGG 0.465057 5_1:-25294986 None:intergenic
ATTCCCGCCACTTGACCTCC+AGG 0.472125 5_1:+25293767 Msa0725560:CDS
TTTACACGATTCAGATATCA+AGG 0.473052 5_1:+25295188 Msa0725560:CDS
TCGATGACATGCAGGGAGCC+AGG 0.473164 5_1:+25295061 Msa0725560:CDS
CTGACATTCACGGCAAAGAA+TGG 0.477327 5_1:+25293820 Msa0725560:CDS
ATCAACCGCGGAGACGGTGC+AGG 0.485860 5_1:-25293546 None:intergenic
CCAGGCCGAAAAGCCGTCTC+AGG 0.490565 5_1:+25293785 Msa0725560:CDS
GAGACGGTGCAGGGAATGAA+TGG 0.491412 5_1:-25293536 None:intergenic
TCTTCGTCTTCACGAACCTC+AGG 0.495857 5_1:-25293645 None:intergenic
CGGCCTGGAGGTCAAGTGGC+GGG 0.508553 5_1:-25293770 None:intergenic
TCGTGTAAATCACTTCCAAC+AGG 0.511200 5_1:-25295174 None:intergenic
TCCCTCTATATCATTGTGTA+AGG 0.511256 5_1:-25294956 None:intergenic
GACACCTGATCACCACCAAC+TGG 0.514844 5_1:+25293877 Msa0725560:CDS
TGAACCTAAAGTTTCGCAGC+TGG 0.518797 5_1:+25294828 Msa0725560:CDS
AAAATCTGTTACTGAGGCCG+TGG 0.525649 5_1:+25294031 Msa0725560:CDS
CTCTCAGTCACTGACATTCA+CGG 0.532201 5_1:+25293810 Msa0725560:CDS
CCTCAGGAGGTTCGTGGACA+CGG 0.532546 5_1:-25293629 None:intergenic
CACGAACCTCAGGAGGTTCG+TGG 0.537961 5_1:-25293635 None:intergenic
TCGAGTGCGAGTCAGTCCTT+GGG 0.537997 5_1:+25294852 Msa0725560:CDS
TTTCTTATCGGCCAATTCCA+CGG 0.546106 5_1:-25294048 None:intergenic
GTTGACGAGAAGAAACTGAT+TGG 0.549713 5_1:+25293909 Msa0725560:CDS
GAGTAGATCAACCGCGGAGA+CGG 0.550031 5_1:-25293552 None:intergenic
GTATATTATCCTACTGCTGA+AGG 0.552234 5_1:+25294086 Msa0725560:CDS
TCGTCCATGGCGCATGCTTG+AGG 0.553392 5_1:+25294265 Msa0725560:CDS
TCGGCCTGGAGGTCAAGTGG+CGG 0.557087 5_1:-25293771 None:intergenic
GGTGGTGATCAGGTGTCGCA+AGG 0.563669 5_1:-25293871 None:intergenic
GGAACTGCAATAATCTCCGT+TGG 0.563886 5_1:+25293966 Msa0725560:CDS
AGCTTCGCCACGTCTACCGT+GGG 0.564056 5_1:+25293844 Msa0725560:CDS
GTGGACACGGTCGTTAGTGA+CGG 0.566445 5_1:-25293616 None:intergenic
CGGTGCAGGGAATGAATGGA+CGG 0.567424 5_1:-25293532 None:intergenic
GAATGAATGGACGGGAACCA+TGG 0.573275 5_1:-25293523 None:intergenic
ACTCCGTCTGATGCTAATAA+CGG 0.577996 5_1:+25293705 Msa0725560:CDS
TCACACCAACCTTCAGCAGT+AGG 0.580736 5_1:-25294095 None:intergenic
TATCTGCTCCTAATCGTCCA+TGG 0.582308 5_1:+25294252 Msa0725560:CDS
AACAAACTCACTCCAGTTGG+TGG 0.582643 5_1:-25293889 None:intergenic
AAATTCTATCTTTGGAATGG+AGG 0.586110 5_1:-25294983 None:intergenic
GAAATAAGCTCAACCTCCCA+AGG 0.586576 5_1:-25294868 None:intergenic
GGTCAGATCATACGTCCTGT+TGG 0.588139 5_1:+25295159 Msa0725560:CDS
TGGACACGGTCGTTAGTGAC+GGG 0.588676 5_1:-25293615 None:intergenic
TCGTCTTCACGAACCTCAGG+AGG 0.589597 5_1:-25293642 None:intergenic
CCAAATAACATAATTGAACC+AGG 0.590972 5_1:-25295138 None:intergenic
TGGATGTAGTGCATGTATGT+TGG 0.599102 5_1:-25294890 None:intergenic
TACACGATTCAGATATCAAG+GGG 0.600673 5_1:+25295190 Msa0725560:CDS
AGGAGTAGTTTGACGTTCGT+CGG 0.604774 5_1:-25293588 None:intergenic
GTTCGTGAAGACGAAGATGA+CGG 0.606081 5_1:+25293651 Msa0725560:CDS
ATTATCCTACTGCTGAAGGT+TGG 0.606451 5_1:+25294090 Msa0725560:CDS
GCCTTACACAATGATATAGA+GGG 0.612818 5_1:+25294955 Msa0725560:CDS
AGTTAATGCTAAGGTTGTGG+AGG 0.615178 5_1:+25294124 Msa0725560:CDS
AGGGAGTCCCACGGTAGACG+TGG 0.627277 5_1:-25293851 None:intergenic
GTGGTGATCAGGTGTCGCAA+GGG 0.628071 5_1:-25293870 None:intergenic
TAATCTCCGTTGGAATCCGT+CGG 0.630455 5_1:+25293976 Msa0725560:CDS
CAGCACCAAACTTCTGCCGA+CGG 0.631188 5_1:-25293992 None:intergenic
TATACCTCAAGCATGCGCCA+TGG 0.631418 5_1:-25294269 None:intergenic
GGTGCAGGGAATGAATGGAC+GGG 0.631616 5_1:-25293531 None:intergenic
AGTGCGAGTCAGTCCTTGGG+AGG 0.635441 5_1:+25294855 Msa0725560:CDS
TTACACGATTCAGATATCAA+GGG 0.635502 5_1:+25295189 Msa0725560:CDS
GTCAACAAACTCACTCCAGT+TGG 0.636827 5_1:-25293892 None:intergenic
TCAACCGCGGAGACGGTGCA+GGG 0.637633 5_1:-25293545 None:intergenic
AAGCTTCGCCACGTCTACCG+TGG 0.643601 5_1:+25293843 Msa0725560:CDS
CCGTGTCCACGAACCTCCTG+AGG 0.646741 5_1:+25293629 Msa0725560:CDS
GACGAGAAGAAACTGATTGG+TGG 0.658536 5_1:+25293912 Msa0725560:CDS
GCTTTGCTCGATGACATGCA+GGG 0.669755 5_1:+25295054 Msa0725560:CDS
CCACCGTTATTAGCATCAGA+CGG 0.670947 5_1:-25293708 None:intergenic
GTCAGCGAGTAGATCAACCG+CGG 0.673456 5_1:-25293558 None:intergenic
GTGACTGAGAGTTCCTGAGA+CGG 0.676102 5_1:-25293798 None:intergenic
CATTCCCTGCACCGTCTCCG+CGG 0.679524 5_1:+25293541 Msa0725560:CDS
GGTGTCGCAAGGGAGTCCCA+CGG 0.699974 5_1:-25293860 None:intergenic
TCGTGAAGACGAAGATGACG+GGG 0.700053 5_1:+25293653 Msa0725560:CDS
GCAGTTGGAAGAAGTTGATG+CGG 0.705608 5_1:-25295097 None:intergenic
CCGTCTGATGCTAATAACGG+TGG 0.711385 5_1:+25293708 Msa0725560:CDS
CTTCTGCCGACGGATTCCAA+CGG 0.718297 5_1:-25293982 None:intergenic
ACACGATTCAGATATCAAGG+GGG 0.776881 5_1:+25295191 Msa0725560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTTAATAAATGTTAT+CGG + chr5_1:25294357-25294376 Msa0725560:intron 10.0%
!!! TTTTTTTTTTTTTTAGCAAA+TGG + chr5_1:25294614-25294633 Msa0725560:intron 10.0%
!!! TTTTGTTTAATAAATGTTAT+CGG + chr5_1:25294357-25294376 Msa0725560:intron 10.0%
!!! TTTTTTTTTTTTTTAGCAAA+TGG + chr5_1:25294614-25294633 Msa0725560:intron 10.0%
!!! ACATCTCATTTTATTTTTTA+AGG - chr5_1:25294748-25294767 None:intergenic 15.0%
!!! ACATCTCATTTTATTTTTTA+AGG - chr5_1:25294748-25294767 None:intergenic 15.0%
!!! TGATTTTTTCATGAAAACTA+AGG - chr5_1:25293943-25293962 None:intergenic 20.0%
!!! ATATCCTATATTTTTCACAT+TGG - chr5_1:25294449-25294468 None:intergenic 20.0%
!!! AATGTTTAAGATTAACACAT+TGG - chr5_1:25294475-25294494 None:intergenic 20.0%
!! ATTATAGTTAATTCATGATG+TGG - chr5_1:25294552-25294571 None:intergenic 20.0%
!! AGAAACTTTATACTTGAAAT+AGG + chr5_1:25294578-25294597 Msa0725560:intron 20.0%
!! ATTTGTACAATATACTTTGT+TGG + chr5_1:25294673-25294692 Msa0725560:intron 20.0%
!! CAAAATTCGCTATATTTATA+GGG - chr5_1:25294717-25294736 None:intergenic 20.0%
!! TCAAAATTCGCTATATTTAT+AGG - chr5_1:25294718-25294737 None:intergenic 20.0%
!!! GATGTTTTAAATGATTGATA+CGG + chr5_1:25294763-25294782 Msa0725560:intron 20.0%
!!! ATTTTTCATGTCAATATCAT+AGG + chr5_1:25294795-25294814 Msa0725560:intron 20.0%
!!! TGATTTTTTCATGAAAACTA+AGG - chr5_1:25293943-25293962 None:intergenic 20.0%
!!! ATATCCTATATTTTTCACAT+TGG - chr5_1:25294449-25294468 None:intergenic 20.0%
!!! AATGTTTAAGATTAACACAT+TGG - chr5_1:25294475-25294494 None:intergenic 20.0%
!! ATTATAGTTAATTCATGATG+TGG - chr5_1:25294552-25294571 None:intergenic 20.0%
!! AGAAACTTTATACTTGAAAT+AGG + chr5_1:25294578-25294597 Msa0725560:intron 20.0%
!! ATTTGTACAATATACTTTGT+TGG + chr5_1:25294673-25294692 Msa0725560:intron 20.0%
!! CAAAATTCGCTATATTTATA+GGG - chr5_1:25294717-25294736 None:intergenic 20.0%
!! TCAAAATTCGCTATATTTAT+AGG - chr5_1:25294718-25294737 None:intergenic 20.0%
!!! GATGTTTTAAATGATTGATA+CGG + chr5_1:25294763-25294782 Msa0725560:intron 20.0%
!!! ATTTTTCATGTCAATATCAT+AGG + chr5_1:25294795-25294814 Msa0725560:intron 20.0%
!! GTTTTCATGAAAAAATCAAC+TGG + chr5_1:25293945-25293964 Msa0725560:CDS 25.0%
!!! TTCAAAAGCCATTTTCTTAT+CGG - chr5_1:25294063-25294082 None:intergenic 25.0%
!! TGATTTTGTAGTTAATGCTA+AGG + chr5_1:25294115-25294134 Msa0725560:CDS 25.0%
! AGGATTCCATTTAATCTTAA+TGG - chr5_1:25294153-25294172 None:intergenic 25.0%
! ATTAAGATTAAATGGAATCC+TGG + chr5_1:25294152-25294171 Msa0725560:CDS 25.0%
!!! TTTTTTGATCAGTTCATGTT+AGG + chr5_1:25294412-25294431 Msa0725560:intron 25.0%
! TGTTCCAATGTGAAAAATAT+AGG + chr5_1:25294442-25294461 Msa0725560:intron 25.0%
! GTTGTGCAATTAAATTTAAG+TGG + chr5_1:25294498-25294517 Msa0725560:intron 25.0%
! TGTCAATATCATAGGTTAAT+TGG + chr5_1:25294803-25294822 Msa0725560:intron 25.0%
! GTCAATATCATAGGTTAATT+GGG + chr5_1:25294804-25294823 Msa0725560:intron 25.0%
!! ATGAAATTCTATCTTTGGAA+TGG - chr5_1:25294989-25295008 None:intergenic 25.0%
! GAAGAATGAAATTCTATCTT+TGG - chr5_1:25294994-25295013 None:intergenic 25.0%
!! GTTTTCATGAAAAAATCAAC+TGG + chr5_1:25293945-25293964 Msa0725560:CDS 25.0%
!!! TTCAAAAGCCATTTTCTTAT+CGG - chr5_1:25294063-25294082 None:intergenic 25.0%
!! TGATTTTGTAGTTAATGCTA+AGG + chr5_1:25294115-25294134 Msa0725560:CDS 25.0%
! AGGATTCCATTTAATCTTAA+TGG - chr5_1:25294153-25294172 None:intergenic 25.0%
! ATTAAGATTAAATGGAATCC+TGG + chr5_1:25294152-25294171 Msa0725560:CDS 25.0%
!!! TTTTTTGATCAGTTCATGTT+AGG + chr5_1:25294412-25294431 Msa0725560:intron 25.0%
! TGTTCCAATGTGAAAAATAT+AGG + chr5_1:25294442-25294461 Msa0725560:intron 25.0%
! GTTGTGCAATTAAATTTAAG+TGG + chr5_1:25294498-25294517 Msa0725560:intron 25.0%
! TGTCAATATCATAGGTTAAT+TGG + chr5_1:25294803-25294822 Msa0725560:intron 25.0%
! GTCAATATCATAGGTTAATT+GGG + chr5_1:25294804-25294823 Msa0725560:intron 25.0%
!! ATGAAATTCTATCTTTGGAA+TGG - chr5_1:25294989-25295008 None:intergenic 25.0%
! GAAGAATGAAATTCTATCTT+TGG - chr5_1:25294994-25295013 None:intergenic 25.0%
AACAGAAAAATCTGTTACTG+AGG + chr5_1:25294025-25294044 Msa0725560:CDS 30.0%
AGGAAGCCATTAAGATTAAA+TGG + chr5_1:25294144-25294163 Msa0725560:CDS 30.0%
GAATGTTTAATTCTCAATCC+AGG - chr5_1:25294173-25294192 None:intergenic 30.0%
! AAAGAGATGCTCAAATTTTG+AGG + chr5_1:25294214-25294233 Msa0725560:CDS 30.0%
! AAGAGATGCTCAAATTTTGA+GGG + chr5_1:25294215-25294234 Msa0725560:CDS 30.0%
AATGTTATCGGTCAAAGTTA+TGG + chr5_1:25294369-25294388 Msa0725560:intron 30.0%
TCAAAGTTATGGTTCATGTT+AGG + chr5_1:25294380-25294399 Msa0725560:intron 30.0%
!! AAATTCTATCTTTGGAATGG+AGG - chr5_1:25294986-25295005 None:intergenic 30.0%
ATTCAACGATGTTTCATTGA+AGG - chr5_1:25295028-25295047 None:intergenic 30.0%
CCAAATAACATAATTGAACC+AGG - chr5_1:25295141-25295160 None:intergenic 30.0%
CCTGGTTCAATTATGTTATT+TGG + chr5_1:25295138-25295157 Msa0725560:CDS 30.0%
TTTACACGATTCAGATATCA+AGG + chr5_1:25295188-25295207 Msa0725560:CDS 30.0%
TTACACGATTCAGATATCAA+GGG + chr5_1:25295189-25295208 Msa0725560:CDS 30.0%
! TATTTTCATTGCATCCTCTA+CGG - chr5_1:25295224-25295243 None:intergenic 30.0%
AACAGAAAAATCTGTTACTG+AGG + chr5_1:25294025-25294044 Msa0725560:CDS 30.0%
AGGAAGCCATTAAGATTAAA+TGG + chr5_1:25294144-25294163 Msa0725560:CDS 30.0%
GAATGTTTAATTCTCAATCC+AGG - chr5_1:25294173-25294192 None:intergenic 30.0%
! AAAGAGATGCTCAAATTTTG+AGG + chr5_1:25294214-25294233 Msa0725560:CDS 30.0%
! AAGAGATGCTCAAATTTTGA+GGG + chr5_1:25294215-25294234 Msa0725560:CDS 30.0%
AATGTTATCGGTCAAAGTTA+TGG + chr5_1:25294369-25294388 Msa0725560:intron 30.0%
TCAAAGTTATGGTTCATGTT+AGG + chr5_1:25294380-25294399 Msa0725560:intron 30.0%
!! AAATTCTATCTTTGGAATGG+AGG - chr5_1:25294986-25295005 None:intergenic 30.0%
ATTCAACGATGTTTCATTGA+AGG - chr5_1:25295028-25295047 None:intergenic 30.0%
CCAAATAACATAATTGAACC+AGG - chr5_1:25295141-25295160 None:intergenic 30.0%
CCTGGTTCAATTATGTTATT+TGG + chr5_1:25295138-25295157 Msa0725560:CDS 30.0%
TTTACACGATTCAGATATCA+AGG + chr5_1:25295188-25295207 Msa0725560:CDS 30.0%
TTACACGATTCAGATATCAA+GGG + chr5_1:25295189-25295208 Msa0725560:CDS 30.0%
! TATTTTCATTGCATCCTCTA+CGG - chr5_1:25295224-25295243 None:intergenic 30.0%
! ATTAATTTTGCGCATTCGCT+AGG - chr5_1:25293747-25293766 None:intergenic 35.0%
GTATATTATCCTACTGCTGA+AGG + chr5_1:25294086-25294105 Msa0725560:CDS 35.0%
TGTAGTTAATGCTAAGGTTG+TGG + chr5_1:25294121-25294140 Msa0725560:CDS 35.0%
GGTACGATATGACTCAAAAA+AGG - chr5_1:25294531-25294550 None:intergenic 35.0%
!!! TCCTAAGCTTTTTTGTTCGA+GGG - chr5_1:25294921-25294940 None:intergenic 35.0%
!!! ATCCTAAGCTTTTTTGTTCG+AGG - chr5_1:25294922-25294941 None:intergenic 35.0%
TCGAACAAAAAAGCTTAGGA+TGG + chr5_1:25294921-25294940 Msa0725560:CDS 35.0%
TGCCTTACACAATGATATAG+AGG + chr5_1:25294954-25294973 Msa0725560:CDS 35.0%
GCCTTACACAATGATATAGA+GGG + chr5_1:25294955-25294974 Msa0725560:CDS 35.0%
TCCCTCTATATCATTGTGTA+AGG - chr5_1:25294959-25294978 None:intergenic 35.0%
!!! AAGTTTTTTGGTGTTGCAGT+TGG - chr5_1:25295115-25295134 None:intergenic 35.0%
AACACCAAAAAACTTAGTCC+TGG + chr5_1:25295120-25295139 Msa0725560:CDS 35.0%
!!! TGAACCAGGACTAAGTTTTT+TGG - chr5_1:25295127-25295146 None:intergenic 35.0%
TACACGATTCAGATATCAAG+GGG + chr5_1:25295190-25295209 Msa0725560:CDS 35.0%
! ATTAATTTTGCGCATTCGCT+AGG - chr5_1:25293747-25293766 None:intergenic 35.0%
GTATATTATCCTACTGCTGA+AGG + chr5_1:25294086-25294105 Msa0725560:CDS 35.0%
TGTAGTTAATGCTAAGGTTG+TGG + chr5_1:25294121-25294140 Msa0725560:CDS 35.0%
GGTACGATATGACTCAAAAA+AGG - chr5_1:25294531-25294550 None:intergenic 35.0%
!!! TCCTAAGCTTTTTTGTTCGA+GGG - chr5_1:25294921-25294940 None:intergenic 35.0%
!!! ATCCTAAGCTTTTTTGTTCG+AGG - chr5_1:25294922-25294941 None:intergenic 35.0%
TCGAACAAAAAAGCTTAGGA+TGG + chr5_1:25294921-25294940 Msa0725560:CDS 35.0%
TGCCTTACACAATGATATAG+AGG + chr5_1:25294954-25294973 Msa0725560:CDS 35.0%
GCCTTACACAATGATATAGA+GGG + chr5_1:25294955-25294974 Msa0725560:CDS 35.0%
TCCCTCTATATCATTGTGTA+AGG - chr5_1:25294959-25294978 None:intergenic 35.0%
!!! AAGTTTTTTGGTGTTGCAGT+TGG - chr5_1:25295115-25295134 None:intergenic 35.0%
AACACCAAAAAACTTAGTCC+TGG + chr5_1:25295120-25295139 Msa0725560:CDS 35.0%
!!! TGAACCAGGACTAAGTTTTT+TGG - chr5_1:25295127-25295146 None:intergenic 35.0%
TACACGATTCAGATATCAAG+GGG + chr5_1:25295190-25295209 Msa0725560:CDS 35.0%
ACTCCGTCTGATGCTAATAA+CGG + chr5_1:25293705-25293724 Msa0725560:CDS 40.0%
GTTGACGAGAAGAAACTGAT+TGG + chr5_1:25293909-25293928 Msa0725560:CDS 40.0%
TTTCTTATCGGCCAATTCCA+CGG - chr5_1:25294051-25294070 None:intergenic 40.0%
GGAATTGGCCGATAAGAAAA+TGG + chr5_1:25294052-25294071 Msa0725560:CDS 40.0%
ATTATCCTACTGCTGAAGGT+TGG + chr5_1:25294090-25294109 Msa0725560:CDS 40.0%
AGTTAATGCTAAGGTTGTGG+AGG + chr5_1:25294124-25294143 Msa0725560:CDS 40.0%
TGGATGTAGTGCATGTATGT+TGG - chr5_1:25294893-25294912 None:intergenic 40.0%
!!! TTTTTTGTTCGAGGGAACTG+TGG - chr5_1:25294913-25294932 None:intergenic 40.0%
TCCCTCGAACAAAAAAGCTT+AGG + chr5_1:25294917-25294936 Msa0725560:CDS 40.0%
TCGTGTAAATCACTTCCAAC+AGG - chr5_1:25295177-25295196 None:intergenic 40.0%
ACACGATTCAGATATCAAGG+GGG + chr5_1:25295191-25295210 Msa0725560:CDS 40.0%
ACTCCGTCTGATGCTAATAA+CGG + chr5_1:25293705-25293724 Msa0725560:CDS 40.0%
GTTGACGAGAAGAAACTGAT+TGG + chr5_1:25293909-25293928 Msa0725560:CDS 40.0%
TTTCTTATCGGCCAATTCCA+CGG - chr5_1:25294051-25294070 None:intergenic 40.0%
GGAATTGGCCGATAAGAAAA+TGG + chr5_1:25294052-25294071 Msa0725560:CDS 40.0%
ATTATCCTACTGCTGAAGGT+TGG + chr5_1:25294090-25294109 Msa0725560:CDS 40.0%
AGTTAATGCTAAGGTTGTGG+AGG + chr5_1:25294124-25294143 Msa0725560:CDS 40.0%
TGGATGTAGTGCATGTATGT+TGG - chr5_1:25294893-25294912 None:intergenic 40.0%
!!! TTTTTTGTTCGAGGGAACTG+TGG - chr5_1:25294913-25294932 None:intergenic 40.0%
TCCCTCGAACAAAAAAGCTT+AGG + chr5_1:25294917-25294936 Msa0725560:CDS 40.0%
TCGTGTAAATCACTTCCAAC+AGG - chr5_1:25295177-25295196 None:intergenic 40.0%
ACACGATTCAGATATCAAGG+GGG + chr5_1:25295191-25295210 Msa0725560:CDS 40.0%
AGGAGTAGTTTGACGTTCGT+CGG - chr5_1:25293591-25293610 None:intergenic 45.0%
GTTCGTGAAGACGAAGATGA+CGG + chr5_1:25293651-25293670 Msa0725560:CDS 45.0%
TTCGTGAAGACGAAGATGAC+GGG + chr5_1:25293652-25293671 Msa0725560:CDS 45.0%
! CGGAGTTAAAGTTTTGCCAG+AGG - chr5_1:25293691-25293710 None:intergenic 45.0%
CCACCGTTATTAGCATCAGA+CGG - chr5_1:25293711-25293730 None:intergenic 45.0%
! TTTTGCGCATTCGCTAGGTA+CGG - chr5_1:25293742-25293761 None:intergenic 45.0%
CTCTCAGTCACTGACATTCA+CGG + chr5_1:25293810-25293829 Msa0725560:CDS 45.0%
CTGACATTCACGGCAAAGAA+TGG + chr5_1:25293820-25293839 Msa0725560:CDS 45.0%
AACAAACTCACTCCAGTTGG+TGG - chr5_1:25293892-25293911 None:intergenic 45.0%
GTCAACAAACTCACTCCAGT+TGG - chr5_1:25293895-25293914 None:intergenic 45.0%
GACGAGAAGAAACTGATTGG+TGG + chr5_1:25293912-25293931 Msa0725560:CDS 45.0%
GGAACTGCAATAATCTCCGT+TGG + chr5_1:25293966-25293985 Msa0725560:CDS 45.0%
TAATCTCCGTTGGAATCCGT+CGG + chr5_1:25293976-25293995 Msa0725560:CDS 45.0%
AAAATCTGTTACTGAGGCCG+TGG + chr5_1:25294031-25294050 Msa0725560:CDS 45.0%
TATCTGCTCCTAATCGTCCA+TGG + chr5_1:25294252-25294271 Msa0725560:CDS 45.0%
TGAACCTAAAGTTTCGCAGC+TGG + chr5_1:25294828-25294847 Msa0725560:CDS 45.0%
GAAATAAGCTCAACCTCCCA+AGG - chr5_1:25294871-25294890 None:intergenic 45.0%
TGCGGAAAAAAGATTGTGCC+TGG - chr5_1:25295082-25295101 None:intergenic 45.0%
!! GCAGTTGGAAGAAGTTGATG+CGG - chr5_1:25295100-25295119 None:intergenic 45.0%
AGGAGTAGTTTGACGTTCGT+CGG - chr5_1:25293591-25293610 None:intergenic 45.0%
GTTCGTGAAGACGAAGATGA+CGG + chr5_1:25293651-25293670 Msa0725560:CDS 45.0%
TTCGTGAAGACGAAGATGAC+GGG + chr5_1:25293652-25293671 Msa0725560:CDS 45.0%
! CGGAGTTAAAGTTTTGCCAG+AGG - chr5_1:25293691-25293710 None:intergenic 45.0%
CCACCGTTATTAGCATCAGA+CGG - chr5_1:25293711-25293730 None:intergenic 45.0%
! TTTTGCGCATTCGCTAGGTA+CGG - chr5_1:25293742-25293761 None:intergenic 45.0%
CTCTCAGTCACTGACATTCA+CGG + chr5_1:25293810-25293829 Msa0725560:CDS 45.0%
CTGACATTCACGGCAAAGAA+TGG + chr5_1:25293820-25293839 Msa0725560:CDS 45.0%
AACAAACTCACTCCAGTTGG+TGG - chr5_1:25293892-25293911 None:intergenic 45.0%
GTCAACAAACTCACTCCAGT+TGG - chr5_1:25293895-25293914 None:intergenic 45.0%
GACGAGAAGAAACTGATTGG+TGG + chr5_1:25293912-25293931 Msa0725560:CDS 45.0%
GGAACTGCAATAATCTCCGT+TGG + chr5_1:25293966-25293985 Msa0725560:CDS 45.0%
TAATCTCCGTTGGAATCCGT+CGG + chr5_1:25293976-25293995 Msa0725560:CDS 45.0%
AAAATCTGTTACTGAGGCCG+TGG + chr5_1:25294031-25294050 Msa0725560:CDS 45.0%
TATCTGCTCCTAATCGTCCA+TGG + chr5_1:25294252-25294271 Msa0725560:CDS 45.0%
TGAACCTAAAGTTTCGCAGC+TGG + chr5_1:25294828-25294847 Msa0725560:CDS 45.0%
GAAATAAGCTCAACCTCCCA+AGG - chr5_1:25294871-25294890 None:intergenic 45.0%
TGCGGAAAAAAGATTGTGCC+TGG - chr5_1:25295082-25295101 None:intergenic 45.0%
!! GCAGTTGGAAGAAGTTGATG+CGG - chr5_1:25295100-25295119 None:intergenic 45.0%
TCTTCGTCTTCACGAACCTC+AGG - chr5_1:25293648-25293667 None:intergenic 50.0%
TCGTGAAGACGAAGATGACG+GGG + chr5_1:25293653-25293672 Msa0725560:CDS 50.0%
CCGTCTGATGCTAATAACGG+TGG + chr5_1:25293708-25293727 Msa0725560:CDS 50.0%
! GAGTTCCTGAGACGGCTTTT+CGG - chr5_1:25293793-25293812 None:intergenic 50.0%
GTGACTGAGAGTTCCTGAGA+CGG - chr5_1:25293801-25293820 None:intergenic 50.0%
TGTTACTGAGGCCGTGGAAT+TGG + chr5_1:25294037-25294056 Msa0725560:CDS 50.0%
TCACACCAACCTTCAGCAGT+AGG - chr5_1:25294098-25294117 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG - chr5_1:25294272-25294291 None:intergenic 50.0%
CGAACCAGCTGCGAAACTTT+AGG - chr5_1:25294835-25294854 None:intergenic 50.0%
TGCTTTGCTCGATGACATGC+AGG + chr5_1:25295053-25295072 Msa0725560:CDS 50.0%
GCTTTGCTCGATGACATGCA+GGG + chr5_1:25295054-25295073 Msa0725560:CDS 50.0%
GGTCAGATCATACGTCCTGT+TGG + chr5_1:25295159-25295178 Msa0725560:CDS 50.0%
CGATTCAGATATCAAGGGGG+AGG + chr5_1:25295194-25295213 Msa0725560:CDS 50.0%
TCAGATATCAAGGGGGAGGA+TGG + chr5_1:25295198-25295217 Msa0725560:CDS 50.0%
TCTTCGTCTTCACGAACCTC+AGG - chr5_1:25293648-25293667 None:intergenic 50.0%
TCGTGAAGACGAAGATGACG+GGG + chr5_1:25293653-25293672 Msa0725560:CDS 50.0%
CCGTCTGATGCTAATAACGG+TGG + chr5_1:25293708-25293727 Msa0725560:CDS 50.0%
! GAGTTCCTGAGACGGCTTTT+CGG - chr5_1:25293793-25293812 None:intergenic 50.0%
GTGACTGAGAGTTCCTGAGA+CGG - chr5_1:25293801-25293820 None:intergenic 50.0%
TGTTACTGAGGCCGTGGAAT+TGG + chr5_1:25294037-25294056 Msa0725560:CDS 50.0%
TCACACCAACCTTCAGCAGT+AGG - chr5_1:25294098-25294117 None:intergenic 50.0%
TATACCTCAAGCATGCGCCA+TGG - chr5_1:25294272-25294291 None:intergenic 50.0%
CGAACCAGCTGCGAAACTTT+AGG - chr5_1:25294835-25294854 None:intergenic 50.0%
TGCTTTGCTCGATGACATGC+AGG + chr5_1:25295053-25295072 Msa0725560:CDS 50.0%
GCTTTGCTCGATGACATGCA+GGG + chr5_1:25295054-25295073 Msa0725560:CDS 50.0%
GGTCAGATCATACGTCCTGT+TGG + chr5_1:25295159-25295178 Msa0725560:CDS 50.0%
CGATTCAGATATCAAGGGGG+AGG + chr5_1:25295194-25295213 Msa0725560:CDS 50.0%
TCAGATATCAAGGGGGAGGA+TGG + chr5_1:25295198-25295217 Msa0725560:CDS 50.0%
GGTGCAGGGAATGAATGGAC+GGG - chr5_1:25293534-25293553 None:intergenic 55.0%
CGGTGCAGGGAATGAATGGA+CGG - chr5_1:25293535-25293554 None:intergenic 55.0%
GAGACGGTGCAGGGAATGAA+TGG - chr5_1:25293539-25293558 None:intergenic 55.0%
GAGTAGATCAACCGCGGAGA+CGG - chr5_1:25293555-25293574 None:intergenic 55.0%
GTCAGCGAGTAGATCAACCG+CGG - chr5_1:25293561-25293580 None:intergenic 55.0%
! GGTCGTTAGTGACGGGAGTT+AGG - chr5_1:25293611-25293630 None:intergenic 55.0%
TGGACACGGTCGTTAGTGAC+GGG - chr5_1:25293618-25293637 None:intergenic 55.0%
GTGGACACGGTCGTTAGTGA+CGG - chr5_1:25293619-25293638 None:intergenic 55.0%
TCGTCTTCACGAACCTCAGG+AGG - chr5_1:25293645-25293664 None:intergenic 55.0%
! GGGGTTGACGTTGTTTCCTC+TGG + chr5_1:25293672-25293691 Msa0725560:CDS 55.0%
! TTTTCGGCCTGGAGGTCAAG+TGG - chr5_1:25293777-25293796 None:intergenic 55.0%
! GTGGTGATCAGGTGTCGCAA+GGG - chr5_1:25293873-25293892 None:intergenic 55.0%
GACACCTGATCACCACCAAC+TGG + chr5_1:25293877-25293896 Msa0725560:CDS 55.0%
!! CACTCCAGTTGGTGGTGATC+AGG - chr5_1:25293884-25293903 None:intergenic 55.0%
! CTTCTGCCGACGGATTCCAA+CGG - chr5_1:25293985-25294004 None:intergenic 55.0%
GGAATCCGTCGGCAGAAGTT+TGG + chr5_1:25293987-25294006 Msa0725560:CDS 55.0%
CAGCACCAAACTTCTGCCGA+CGG - chr5_1:25293995-25294014 None:intergenic 55.0%
AGCATGCGCCATGGACGATT+AGG - chr5_1:25294263-25294282 None:intergenic 55.0%
TTCGAGTGCGAGTCAGTCCT+TGG + chr5_1:25294851-25294870 Msa0725560:CDS 55.0%
TCGAGTGCGAGTCAGTCCTT+GGG + chr5_1:25294852-25294871 Msa0725560:CDS 55.0%
GGTGCAGGGAATGAATGGAC+GGG - chr5_1:25293534-25293553 None:intergenic 55.0%
CGGTGCAGGGAATGAATGGA+CGG - chr5_1:25293535-25293554 None:intergenic 55.0%
GAGACGGTGCAGGGAATGAA+TGG - chr5_1:25293539-25293558 None:intergenic 55.0%
GAGTAGATCAACCGCGGAGA+CGG - chr5_1:25293555-25293574 None:intergenic 55.0%
GTCAGCGAGTAGATCAACCG+CGG - chr5_1:25293561-25293580 None:intergenic 55.0%
! GGTCGTTAGTGACGGGAGTT+AGG - chr5_1:25293611-25293630 None:intergenic 55.0%
TGGACACGGTCGTTAGTGAC+GGG - chr5_1:25293618-25293637 None:intergenic 55.0%
GTGGACACGGTCGTTAGTGA+CGG - chr5_1:25293619-25293638 None:intergenic 55.0%
TCGTCTTCACGAACCTCAGG+AGG - chr5_1:25293645-25293664 None:intergenic 55.0%
! GGGGTTGACGTTGTTTCCTC+TGG + chr5_1:25293672-25293691 Msa0725560:CDS 55.0%
! TTTTCGGCCTGGAGGTCAAG+TGG - chr5_1:25293777-25293796 None:intergenic 55.0%
! GTGGTGATCAGGTGTCGCAA+GGG - chr5_1:25293873-25293892 None:intergenic 55.0%
GACACCTGATCACCACCAAC+TGG + chr5_1:25293877-25293896 Msa0725560:CDS 55.0%
!! CACTCCAGTTGGTGGTGATC+AGG - chr5_1:25293884-25293903 None:intergenic 55.0%
! CTTCTGCCGACGGATTCCAA+CGG - chr5_1:25293985-25294004 None:intergenic 55.0%
GGAATCCGTCGGCAGAAGTT+TGG + chr5_1:25293987-25294006 Msa0725560:CDS 55.0%
CAGCACCAAACTTCTGCCGA+CGG - chr5_1:25293995-25294014 None:intergenic 55.0%
AGCATGCGCCATGGACGATT+AGG - chr5_1:25294263-25294282 None:intergenic 55.0%
TTCGAGTGCGAGTCAGTCCT+TGG + chr5_1:25294851-25294870 Msa0725560:CDS 55.0%
TCGAGTGCGAGTCAGTCCTT+GGG + chr5_1:25294852-25294871 Msa0725560:CDS 55.0%
CCTCAGGAGGTTCGTGGACA+CGG - chr5_1:25293632-25293651 None:intergenic 60.0%
CACGAACCTCAGGAGGTTCG+TGG - chr5_1:25293638-25293657 None:intergenic 60.0%
ATTCCCGCCACTTGACCTCC+AGG + chr5_1:25293767-25293786 Msa0725560:CDS 60.0%
AAGCTTCGCCACGTCTACCG+TGG + chr5_1:25293843-25293862 Msa0725560:CDS 60.0%
AGCTTCGCCACGTCTACCGT+GGG + chr5_1:25293844-25293863 Msa0725560:CDS 60.0%
! GGTGGTGATCAGGTGTCGCA+AGG - chr5_1:25293874-25293893 None:intergenic 60.0%
TCGTCCATGGCGCATGCTTG+AGG + chr5_1:25294265-25294284 Msa0725560:CDS 60.0%
AGTGCGAGTCAGTCCTTGGG+AGG + chr5_1:25294855-25294874 Msa0725560:CDS 60.0%
TCGATGACATGCAGGGAGCC+AGG + chr5_1:25295061-25295080 Msa0725560:CDS 60.0%
CCTCAGGAGGTTCGTGGACA+CGG - chr5_1:25293632-25293651 None:intergenic 60.0%
CACGAACCTCAGGAGGTTCG+TGG - chr5_1:25293638-25293657 None:intergenic 60.0%
ATTCCCGCCACTTGACCTCC+AGG + chr5_1:25293767-25293786 Msa0725560:CDS 60.0%
AAGCTTCGCCACGTCTACCG+TGG + chr5_1:25293843-25293862 Msa0725560:CDS 60.0%
AGCTTCGCCACGTCTACCGT+GGG + chr5_1:25293844-25293863 Msa0725560:CDS 60.0%
! GGTGGTGATCAGGTGTCGCA+AGG - chr5_1:25293874-25293893 None:intergenic 60.0%
TCGTCCATGGCGCATGCTTG+AGG + chr5_1:25294265-25294284 Msa0725560:CDS 60.0%
AGTGCGAGTCAGTCCTTGGG+AGG + chr5_1:25294855-25294874 Msa0725560:CDS 60.0%
TCGATGACATGCAGGGAGCC+AGG + chr5_1:25295061-25295080 Msa0725560:CDS 60.0%
CATTCCCTGCACCGTCTCCG+CGG + chr5_1:25293541-25293560 Msa0725560:CDS 65.0%
TCAACCGCGGAGACGGTGCA+GGG - chr5_1:25293548-25293567 None:intergenic 65.0%
ATCAACCGCGGAGACGGTGC+AGG - chr5_1:25293549-25293568 None:intergenic 65.0%
CCGTGTCCACGAACCTCCTG+AGG + chr5_1:25293629-25293648 Msa0725560:CDS 65.0%
TCGGCCTGGAGGTCAAGTGG+CGG - chr5_1:25293774-25293793 None:intergenic 65.0%
! GAGACGGCTTTTCGGCCTGG+AGG - chr5_1:25293785-25293804 None:intergenic 65.0%
! CCTGAGACGGCTTTTCGGCC+TGG - chr5_1:25293788-25293807 None:intergenic 65.0%
CCAGGCCGAAAAGCCGTCTC+AGG + chr5_1:25293785-25293804 Msa0725560:CDS 65.0%
AGGGAGTCCCACGGTAGACG+TGG - chr5_1:25293854-25293873 None:intergenic 65.0%
! GGTGTCGCAAGGGAGTCCCA+CGG - chr5_1:25293863-25293882 None:intergenic 65.0%
AAGGGGGAGGATGGCCGTAG+AGG + chr5_1:25295207-25295226 Msa0725560:CDS 65.0%
CATTCCCTGCACCGTCTCCG+CGG + chr5_1:25293541-25293560 Msa0725560:CDS 65.0%
TCAACCGCGGAGACGGTGCA+GGG - chr5_1:25293548-25293567 None:intergenic 65.0%
ATCAACCGCGGAGACGGTGC+AGG - chr5_1:25293549-25293568 None:intergenic 65.0%
CCGTGTCCACGAACCTCCTG+AGG + chr5_1:25293629-25293648 Msa0725560:CDS 65.0%
TCGGCCTGGAGGTCAAGTGG+CGG - chr5_1:25293774-25293793 None:intergenic 65.0%
! GAGACGGCTTTTCGGCCTGG+AGG - chr5_1:25293785-25293804 None:intergenic 65.0%
! CCTGAGACGGCTTTTCGGCC+TGG - chr5_1:25293788-25293807 None:intergenic 65.0%
CCAGGCCGAAAAGCCGTCTC+AGG + chr5_1:25293785-25293804 Msa0725560:CDS 65.0%
AGGGAGTCCCACGGTAGACG+TGG - chr5_1:25293854-25293873 None:intergenic 65.0%
! GGTGTCGCAAGGGAGTCCCA+CGG - chr5_1:25293863-25293882 None:intergenic 65.0%
AAGGGGGAGGATGGCCGTAG+AGG + chr5_1:25295207-25295226 Msa0725560:CDS 65.0%
CGGCCTGGAGGTCAAGTGGC+GGG - chr5_1:25293773-25293792 None:intergenic 70.0%
CGGCCTGGAGGTCAAGTGGC+GGG - chr5_1:25293773-25293792 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 25293525 25295254 25293525 ID=Msa0725560;Name=Msa0725560
chr5_1 mRNA 25293525 25295254 25293525 ID=Msa0725560-mRNA-1;Parent=Msa0725560;Name=Msa0725560-mRNA-1;_AED=0.08;_eAED=0.12;_QI=0|0|0|1|1|1|2|0|399
chr5_1 exon 25293525 25294286 25293525 ID=Msa0725560-mRNA-1:exon:9173;Parent=Msa0725560-mRNA-1
chr5_1 exon 25294817 25295254 25294817 ID=Msa0725560-mRNA-1:exon:9174;Parent=Msa0725560-mRNA-1
chr5_1 CDS 25293525 25294286 25293525 ID=Msa0725560-mRNA-1:cds;Parent=Msa0725560-mRNA-1
chr5_1 CDS 25294817 25295254 25294817 ID=Msa0725560-mRNA-1:cds;Parent=Msa0725560-mRNA-1
Gene Sequence

>Msa0725560

ATGGTTCCCGTCCATTCATTCCCTGCACCGTCTCCGCGGTTGATCTACTCGCTGACTCTCGTACCGACGAACGTCAAACTACTCCTAACTCCCGTCACTAACGACCGTGTCCACGAACCTCCTGAGGTTCGTGAAGACGAAGATGACGGGGTTGACGTTGTTTCCTCTGGCAAAACTTTAACTCCGTCTGATGCTAATAACGGTGGTGCATTCTCCGTACCTAGCGAATGCGCAAAATTAATATTCCCGCCACTTGACCTCCAGGCCGAAAAGCCGTCTCAGGAACTCTCAGTCACTGACATTCACGGCAAAGAATGGAAGCTTCGCCACGTCTACCGTGGGACTCCCTTGCGACACCTGATCACCACCAACTGGAGTGAGTTTGTTGACGAGAAGAAACTGATTGGTGGTGATTCCTTAGTTTTCATGAAAAAATCAACTGGAACTGCAATAATCTCCGTTGGAATCCGTCGGCAGAAGTTTGGTGCTGCTACTAAAATAACAGAAAAATCTGTTACTGAGGCCGTGGAATTGGCCGATAAGAAAATGGCTTTTGAAGTTGTATATTATCCTACTGCTGAAGGTTGGTGTGATTTTGTAGTTAATGCTAAGGTTGTGGAGGAAGCCATTAAGATTAAATGGAATCCTGGATTGAGAATTAAACATTCTTTGAAGAAAGACAATTCTTCAAAGAGATGCTCAAATTTTGAGGGAACAATATCTGCTCTATCTGCTCCTAATCGTCCATGGCGCATGCTTGAGGTTAATTGGGATGAACCTAAAGTTTCGCAGCTGGTTCGAGTGCGAGTCAGTCCTTGGGAGGTTGAGCTTATTTCCAACATACATGCACTACATCCACAGTTCCCTCGAACAAAAAAGCTTAGGATGGCTAAAGATTCTGCCTTACACAATGATATAGAGGGAGACTCCTCCATTCCAAAGATAGAATTTCATTCTTCAGCGACGAGCTCCTTCAATGAAACATCGTTGAATAGCAATGCTTTGCTCGATGACATGCAGGGAGCCAGGCACAATCTTTTTTCCGCATCAACTTCTTCCAACTGCAACACCAAAAAACTTAGTCCTGGTTCAATTATGTTATTTGGTCAGATCATACGTCCTGTTGGAAGTGATTTACACGATTCAGATATCAAGGGGGAGGATGGCCGTAGAGGATGCAATGAAAATAGTCTTGTGTAG
Protein sequence

>Msa0725560

MVPVHSFPAPSPRLIYSLTLVPTNVKLLLTPVTNDRVHEPPEVREDEDDGVDVVSSGKTLTPSDANNGGAFSVPSECAKLIFPPLDLQAEKPSQELSVTDIHGKEWKLRHVYRGTPLRHLITTNWSEFVDEKKLIGGDSLVFMKKSTGTAIISVGIRRQKFGAATKITEKSVTEAVELADKKMAFEVVYYPTAEGWCDFVVNAKVVEEAIKIKWNPGLRIKHSLKKDNSSKRCSNFEGTISALSAPNRPWRMLEVNWDEPKVSQLVRVRVSPWEVELISNIHALHPQFPRTKKLRMAKDSALHNDIEGDSSIPKIEFHSSATSSFNETSLNSNALLDDMQGARHNLFSASTSSNCNTKKLSPGSIMLFGQIIRPVGSDLHDSDIKGEDGRRGCNENSLV*