Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725810 | XP_003613825.1 | 86.667 | 360 | 42 | 3 | 1 | 355 | 1 | 359 | 0.0 | 610 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725810 | sp|Q8W1E3|CDF1_ARATH | 45.635 | 252 | 109 | 7 | 91 | 329 | 27 | 263 | 7.91e-56 | 187 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725810 | G7KGL7 | 86.667 | 360 | 42 | 3 | 1 | 355 | 1 | 359 | 0.0 | 610 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0725810 | TF | C2C2-Dof |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725810 | MtrunA17_Chr5g0417561 | 86.667 | 360 | 42 | 3 | 1 | 355 | 1 | 359 | 0.0 | 610 |
| Msa0725810 | MtrunA17_Chr5g0417551 | 83.379 | 367 | 49 | 3 | 1 | 355 | 1 | 367 | 0.0 | 593 |
| Msa0725810 | MtrunA17_Chr5g0417601 | 59.847 | 391 | 107 | 13 | 1 | 355 | 1 | 377 | 8.23e-129 | 374 |
| Msa0725810 | MtrunA17_Chr5g0417571 | 66.885 | 305 | 69 | 8 | 1 | 279 | 1 | 299 | 8.26e-113 | 331 |
| Msa0725810 | MtrunA17_Chr4g0042481 | 35.463 | 454 | 157 | 15 | 4 | 338 | 6 | 442 | 6.93e-60 | 200 |
| Msa0725810 | MtrunA17_Chr7g0217581 | 32.591 | 494 | 178 | 20 | 2 | 355 | 101 | 579 | 2.08e-55 | 191 |
| Msa0725810 | MtrunA17_Chr3g0092111 | 38.551 | 345 | 107 | 15 | 89 | 337 | 107 | 442 | 4.49e-48 | 169 |
| Msa0725810 | MtrunA17_Chr8g0355261 | 30.858 | 431 | 186 | 17 | 4 | 340 | 12 | 424 | 1.63e-40 | 148 |
| Msa0725810 | MtrunA17_Chr6g0453321 | 54.962 | 131 | 37 | 5 | 74 | 196 | 97 | 213 | 1.48e-34 | 132 |
| Msa0725810 | MtrunA17_Chr6g0453321 | 36.025 | 161 | 66 | 8 | 222 | 355 | 341 | 491 | 5.09e-11 | 63.9 |
| Msa0725810 | MtrunA17_Chr7g0254161 | 33.333 | 297 | 107 | 11 | 112 | 318 | 95 | 390 | 1.50e-31 | 123 |
| Msa0725810 | MtrunA17_Chr2g0283811 | 72.308 | 65 | 18 | 0 | 107 | 171 | 36 | 100 | 7.21e-30 | 112 |
| Msa0725810 | MtrunA17_Chr6g0460731 | 58.889 | 90 | 31 | 2 | 88 | 171 | 60 | 149 | 9.85e-30 | 117 |
| Msa0725810 | MtrunA17_Chr6g0460721 | 54.444 | 90 | 35 | 2 | 88 | 171 | 53 | 142 | 3.33e-27 | 109 |
| Msa0725810 | MtrunA17_Chr8g0374111 | 71.698 | 53 | 15 | 0 | 118 | 170 | 29 | 81 | 2.51e-22 | 94.4 |
| Msa0725810 | MtrunA17_Chr4g0010151 | 48.718 | 78 | 40 | 0 | 94 | 171 | 58 | 135 | 1.13e-21 | 95.1 |
| Msa0725810 | MtrunA17_Chr4g0061761 | 66.038 | 53 | 18 | 0 | 116 | 168 | 38 | 90 | 6.05e-21 | 92.4 |
| Msa0725810 | MtrunA17_Chr8g0341671 | 69.231 | 52 | 16 | 0 | 118 | 169 | 20 | 71 | 6.30e-21 | 90.1 |
| Msa0725810 | MtrunA17_Chr8g0374251 | 60.317 | 63 | 25 | 0 | 118 | 180 | 68 | 130 | 1.06e-20 | 92.0 |
| Msa0725810 | MtrunA17_Chr2g0328021 | 64.815 | 54 | 19 | 0 | 118 | 171 | 62 | 115 | 2.27e-20 | 90.1 |
| Msa0725810 | MtrunA17_Chr2g0308011 | 69.388 | 49 | 15 | 0 | 118 | 166 | 37 | 85 | 2.37e-20 | 88.2 |
| Msa0725810 | MtrunA17_Chr3g0127201 | 60.000 | 60 | 24 | 0 | 115 | 174 | 24 | 83 | 2.49e-20 | 90.1 |
| Msa0725810 | MtrunA17_Chr7g0237921 | 46.429 | 84 | 45 | 0 | 88 | 171 | 46 | 129 | 2.59e-20 | 90.9 |
| Msa0725810 | MtrunA17_Chr8g0346551 | 54.688 | 64 | 29 | 0 | 108 | 171 | 14 | 77 | 3.15e-20 | 89.4 |
| Msa0725810 | MtrunA17_Chr2g0282511 | 49.383 | 81 | 40 | 1 | 87 | 166 | 13 | 93 | 3.47e-20 | 90.1 |
| Msa0725810 | MtrunA17_Chr2g0326001 | 55.882 | 68 | 30 | 0 | 104 | 171 | 26 | 93 | 3.53e-20 | 89.7 |
| Msa0725810 | MtrunA17_Chr4g0031411 | 45.631 | 103 | 55 | 1 | 102 | 203 | 59 | 161 | 3.61e-20 | 90.1 |
| Msa0725810 | MtrunA17_Chr1g0188851 | 66.667 | 51 | 17 | 0 | 120 | 170 | 45 | 95 | 1.31e-19 | 87.8 |
| Msa0725810 | MtrunA17_Chr4g0047761 | 61.818 | 55 | 21 | 0 | 118 | 172 | 72 | 126 | 1.34e-19 | 88.6 |
| Msa0725810 | MtrunA17_Chr4g0047001 | 69.231 | 52 | 16 | 0 | 120 | 171 | 57 | 108 | 1.65e-19 | 89.0 |
| Msa0725810 | MtrunA17_Chr4g0030051 | 60.000 | 65 | 22 | 1 | 110 | 170 | 29 | 93 | 1.90e-19 | 87.4 |
| Msa0725810 | MtrunA17_Chr7g0223311 | 66.667 | 51 | 17 | 0 | 120 | 170 | 79 | 129 | 2.18e-19 | 88.6 |
| Msa0725810 | MtrunA17_Chr8g0367161 | 45.263 | 95 | 41 | 3 | 100 | 191 | 22 | 108 | 5.80e-19 | 87.0 |
| Msa0725810 | MtrunA17_Chr3g0126201 | 61.017 | 59 | 19 | 1 | 113 | 171 | 50 | 104 | 7.32e-19 | 86.7 |
| Msa0725810 | MtrunA17_Chr2g0282051 | 67.308 | 52 | 16 | 1 | 120 | 171 | 48 | 98 | 8.30e-19 | 85.5 |
| Msa0725810 | MtrunA17_Chr1g0177251 | 62.069 | 58 | 21 | 1 | 115 | 171 | 8 | 65 | 1.66e-18 | 84.7 |
| Msa0725810 | MtrunA17_Chr5g0411951 | 58.182 | 55 | 23 | 0 | 114 | 168 | 39 | 93 | 5.45e-18 | 84.0 |
| Msa0725810 | MtrunA17_Chr2g0282441 | 64.000 | 50 | 18 | 0 | 120 | 169 | 27 | 76 | 9.57e-18 | 83.2 |
| Msa0725810 | MtrunA17_Chr3g0117601 | 64.706 | 51 | 18 | 0 | 118 | 168 | 61 | 111 | 1.74e-17 | 82.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0725810 | AT5G62430.1 | 45.635 | 252 | 109 | 7 | 91 | 329 | 27 | 263 | 8.04e-57 | 187 |
| Msa0725810 | AT5G39660.3 | 37.677 | 353 | 126 | 15 | 74 | 340 | 87 | 431 | 2.94e-46 | 164 |
| Msa0725810 | AT5G39660.1 | 37.677 | 353 | 126 | 15 | 74 | 340 | 87 | 431 | 2.94e-46 | 164 |
| Msa0725810 | AT5G39660.2 | 37.677 | 353 | 126 | 15 | 74 | 340 | 87 | 431 | 2.94e-46 | 164 |
| Msa0725810 | AT1G69570.1 | 36.333 | 300 | 125 | 14 | 83 | 331 | 81 | 365 | 1.62e-39 | 145 |
| Msa0725810 | AT1G26790.1 | 34.701 | 268 | 136 | 10 | 99 | 338 | 92 | 348 | 8.53e-37 | 137 |
| Msa0725810 | AT1G29160.1 | 74.242 | 66 | 17 | 0 | 106 | 171 | 50 | 115 | 1.33e-32 | 120 |
| Msa0725810 | AT3G47500.1 | 58.559 | 111 | 40 | 2 | 77 | 186 | 68 | 173 | 4.27e-32 | 125 |
| Msa0725810 | AT3G47500.1 | 40.496 | 121 | 55 | 5 | 224 | 327 | 293 | 413 | 9.94e-13 | 69.7 |
| Msa0725810 | AT2G34140.1 | 47.059 | 119 | 52 | 2 | 81 | 188 | 15 | 133 | 2.58e-31 | 117 |
| Msa0725810 | AT3G55370.1 | 39.062 | 128 | 77 | 1 | 47 | 173 | 4 | 131 | 1.35e-23 | 100 |
| Msa0725810 | AT3G55370.2 | 39.062 | 128 | 77 | 1 | 47 | 173 | 4 | 131 | 2.34e-23 | 100 |
| Msa0725810 | AT3G55370.3 | 50.575 | 87 | 43 | 0 | 87 | 173 | 90 | 176 | 2.87e-23 | 100 |
| Msa0725810 | AT1G51700.1 | 62.500 | 64 | 24 | 0 | 118 | 181 | 33 | 96 | 5.15e-22 | 92.8 |
| Msa0725810 | AT2G28810.2 | 42.268 | 97 | 56 | 0 | 73 | 169 | 32 | 128 | 1.09e-21 | 94.7 |
| Msa0725810 | AT2G28810.1 | 42.268 | 97 | 56 | 0 | 73 | 169 | 49 | 145 | 1.18e-21 | 95.1 |
| Msa0725810 | AT5G60200.1 | 54.795 | 73 | 33 | 0 | 108 | 180 | 45 | 117 | 1.90e-21 | 92.8 |
| Msa0725810 | AT5G60850.1 | 67.857 | 56 | 18 | 0 | 118 | 173 | 51 | 106 | 3.14e-21 | 93.2 |
| Msa0725810 | AT3G50410.1 | 71.154 | 52 | 15 | 0 | 118 | 169 | 30 | 81 | 4.46e-21 | 91.7 |
| Msa0725810 | AT5G02460.1 | 55.714 | 70 | 31 | 0 | 102 | 171 | 79 | 148 | 1.24e-20 | 92.8 |
| Msa0725810 | AT2G37590.1 | 62.069 | 58 | 22 | 0 | 114 | 171 | 85 | 142 | 1.64e-20 | 91.7 |
| Msa0725810 | AT3G21270.1 | 67.925 | 53 | 17 | 0 | 118 | 170 | 29 | 81 | 2.35e-20 | 88.6 |
| Msa0725810 | AT5G66940.1 | 66.038 | 53 | 18 | 0 | 118 | 170 | 32 | 84 | 6.90e-20 | 87.8 |
| Msa0725810 | AT1G07640.1 | 56.716 | 67 | 26 | 1 | 104 | 170 | 10 | 73 | 8.40e-20 | 88.6 |
| Msa0725810 | AT2G28510.1 | 54.286 | 70 | 32 | 0 | 108 | 177 | 38 | 107 | 1.02e-19 | 88.6 |
| Msa0725810 | AT1G07640.2 | 57.971 | 69 | 25 | 2 | 104 | 171 | 66 | 131 | 1.08e-19 | 89.4 |
| Msa0725810 | AT5G65590.1 | 54.054 | 74 | 31 | 1 | 100 | 173 | 26 | 96 | 1.09e-19 | 89.0 |
| Msa0725810 | AT1G07640.3 | 57.971 | 69 | 25 | 2 | 104 | 171 | 74 | 139 | 1.35e-19 | 89.0 |
| Msa0725810 | AT3G45610.1 | 57.377 | 61 | 26 | 0 | 114 | 174 | 36 | 96 | 1.61e-19 | 87.0 |
| Msa0725810 | AT1G64620.1 | 44.086 | 93 | 48 | 1 | 74 | 166 | 9 | 97 | 1.85e-19 | 89.0 |
| Msa0725810 | AT3G61850.2 | 59.016 | 61 | 25 | 0 | 114 | 174 | 58 | 118 | 2.14e-19 | 87.8 |
| Msa0725810 | AT3G61850.3 | 59.016 | 61 | 25 | 0 | 114 | 174 | 58 | 118 | 2.14e-19 | 87.8 |
| Msa0725810 | AT3G61850.1 | 59.016 | 61 | 25 | 0 | 114 | 174 | 70 | 130 | 2.25e-19 | 87.8 |
| Msa0725810 | AT1G28310.1 | 66.667 | 54 | 18 | 0 | 118 | 171 | 27 | 80 | 2.41e-19 | 87.8 |
| Msa0725810 | AT4G38000.1 | 56.250 | 64 | 27 | 1 | 113 | 175 | 36 | 99 | 2.64e-19 | 86.7 |
| Msa0725810 | AT1G28310.2 | 66.667 | 54 | 18 | 0 | 118 | 171 | 51 | 104 | 2.96e-19 | 88.2 |
| Msa0725810 | AT3G61850.5 | 59.016 | 61 | 25 | 0 | 114 | 174 | 58 | 118 | 3.05e-19 | 87.8 |
| Msa0725810 | AT3G61850.4 | 59.016 | 61 | 25 | 0 | 114 | 174 | 70 | 130 | 3.25e-19 | 87.8 |
| Msa0725810 | AT1G47655.1 | 51.948 | 77 | 33 | 2 | 92 | 166 | 3 | 77 | 3.51e-19 | 85.5 |
| Msa0725810 | AT4G24060.1 | 59.677 | 62 | 21 | 1 | 110 | 171 | 49 | 106 | 5.17e-19 | 87.4 |
| Msa0725810 | AT1G21340.1 | 45.977 | 87 | 44 | 1 | 97 | 183 | 17 | 100 | 3.51e-18 | 83.6 |
| Msa0725810 | AT3G52440.1 | 46.591 | 88 | 43 | 1 | 120 | 207 | 27 | 110 | 4.62e-18 | 83.2 |
| Msa0725810 | AT3G52440.2 | 46.591 | 88 | 43 | 1 | 120 | 207 | 46 | 129 | 7.95e-18 | 82.8 |
| Msa0725810 | AT4G00940.1 | 60.714 | 56 | 22 | 0 | 120 | 175 | 70 | 125 | 8.44e-18 | 83.2 |
| Msa0725810 | AT4G00940.3 | 60.714 | 56 | 22 | 0 | 120 | 175 | 70 | 125 | 8.44e-18 | 83.2 |
| Msa0725810 | AT4G00940.2 | 60.714 | 56 | 22 | 0 | 120 | 175 | 70 | 125 | 8.44e-18 | 83.2 |
| Msa0725810 | AT4G21050.1 | 45.455 | 88 | 46 | 1 | 103 | 190 | 9 | 94 | 1.42e-17 | 80.9 |
| Msa0725810 | AT2G46590.1 | 55.932 | 59 | 25 | 1 | 108 | 165 | 57 | 115 | 2.94e-17 | 82.4 |
| Msa0725810 | AT2G46590.2 | 55.932 | 59 | 25 | 1 | 108 | 165 | 69 | 127 | 3.12e-17 | 82.4 |
| Msa0725810 | AT5G62940.1 | 65.306 | 49 | 17 | 0 | 120 | 168 | 75 | 123 | 4.08e-17 | 82.4 |
| Msa0725810 | AT4G21040.1 | 55.769 | 52 | 23 | 0 | 120 | 171 | 27 | 78 | 4.13e-15 | 74.3 |
| Msa0725810 | AT4G21080.1 | 55.769 | 52 | 23 | 0 | 120 | 171 | 27 | 78 | 1.57e-14 | 73.2 |
Find 70 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTCCAAGTAAACCTACTTT+AGG | 0.234419 | 5_1:+25708807 | Msa0725810:CDS |
| TCTTCAATTCTTAATTTCTT+AGG | 0.243331 | 5_1:-25708894 | None:intergenic |
| GAACCCTTTGCAGCTTCATT+AGG | 0.275268 | 5_1:-25708918 | None:intergenic |
| GAGGTAGGTTCTTTCCTTGA+TGG | 0.282122 | 5_1:-25708195 | None:intergenic |
| CAACCCAATATAGCATACTA+TGG | 0.283526 | 5_1:+25708732 | Msa0725810:CDS |
| AAATAAATATCATAAGCTTT+TGG | 0.288272 | 5_1:-25709513 | None:intergenic |
| AAGCTGCAAAGGGTTCTAAT+TGG | 0.333760 | 5_1:+25708925 | Msa0725810:CDS |
| ATGAGTACTGTCTTGAACTT+TGG | 0.343501 | 5_1:+25708564 | Msa0725810:CDS |
| AACCCTTTGCAGCTTCATTA+GGG | 0.351302 | 5_1:-25708917 | None:intergenic |
| TTCCAAGTAAACCTACTTTA+GGG | 0.369270 | 5_1:+25708808 | Msa0725810:CDS |
| TTCCCTAAAGTAGGTTTACT+TGG | 0.378626 | 5_1:-25708810 | None:intergenic |
| TTCAATGGATTTGCATCTAC+AGG | 0.387612 | 5_1:+25708981 | Msa0725810:CDS |
| AGTGAAGTTGAAGACATAAT+AGG | 0.397363 | 5_1:-25708597 | None:intergenic |
| GAATTCTTCAAAGAGATATA+AGG | 0.418199 | 5_1:+25707616 | Msa0725810:CDS |
| GGGGTTGTTTGGTCCCATCA+TGG | 0.418852 | 5_1:+25708754 | Msa0725810:CDS |
| TTTGAAGAATTCACTTCAAG+TGG | 0.441472 | 5_1:-25707605 | None:intergenic |
| ACTTTGTTCATCAACTTTCG+TGG | 0.442217 | 5_1:-25708307 | None:intergenic |
| GAAACAGGATAACACATTGC+TGG | 0.451292 | 5_1:-25708705 | None:intergenic |
| CTCTGTAGTAGTAATATTGT+AGG | 0.452797 | 5_1:+25709488 | Msa0725810:CDS |
| CTTGATAATGTAGAGTTACA+AGG | 0.454232 | 5_1:-25707370 | None:intergenic |
| ATATTGGGTTGGAATGAAAC+AGG | 0.454445 | 5_1:-25708720 | None:intergenic |
| CTTGAATGTTTCCCTAAAGT+AGG | 0.465584 | 5_1:-25708819 | None:intergenic |
| CATTAGTCATATCATATCTC+TGG | 0.467327 | 5_1:-25707445 | None:intergenic |
| ATCAATTTCAGAAACCATCA+AGG | 0.479118 | 5_1:+25708181 | Msa0725810:intron |
| GGATCAGAAGGTGAAACATC+TGG | 0.482490 | 5_1:+25708639 | Msa0725810:CDS |
| CATACTTCTCGTGGTTCCTC+CGG | 0.484155 | 5_1:-25708472 | None:intergenic |
| GGTTCTAATTGGTTAACACT+TGG | 0.486031 | 5_1:+25708936 | Msa0725810:CDS |
| TAACACATTGCTGGGTTCCA+TGG | 0.491823 | 5_1:-25708696 | None:intergenic |
| AACCCAATATAGCATACTAT+GGG | 0.495182 | 5_1:+25708733 | Msa0725810:CDS |
| AAAATGAATGTTGGATCAGA+AGG | 0.495845 | 5_1:+25708627 | Msa0725810:CDS |
| CTCGACAAGAAAATGAATGT+TGG | 0.500402 | 5_1:+25708618 | Msa0725810:CDS |
| GCAGAAGTGACGGGGCTGGT+TGG | 0.505366 | 5_1:-25708424 | None:intergenic |
| AGTTTCTGTTTGTGATGTGG+TGG | 0.513159 | 5_1:-25708271 | None:intergenic |
| TTAGGGAAACATTCAAGAGA+TGG | 0.534355 | 5_1:+25708825 | Msa0725810:CDS |
| TTTGTTTGGAGCTTTGTCCT+GGG | 0.536610 | 5_1:-25708337 | None:intergenic |
| TGTCAAAGATATTGGACTGC+CGG | 0.537892 | 5_1:+25708453 | Msa0725810:CDS |
| GACCCTAATGAAGCTGCAAA+GGG | 0.538987 | 5_1:+25708915 | Msa0725810:CDS |
| TAGGTTGTACGCTCCATGAT+GGG | 0.539001 | 5_1:-25708767 | None:intergenic |
| TTGACGATTATGTGAGGCAT+CGG | 0.539506 | 5_1:-25708541 | None:intergenic |
| AGAAGTTTCTGTTTGTGATG+TGG | 0.540915 | 5_1:-25708274 | None:intergenic |
| AAACAGGATAACACATTGCT+GGG | 0.549807 | 5_1:-25708704 | None:intergenic |
| TTAACACTTGGAATCAAAAG+TGG | 0.550116 | 5_1:+25708948 | Msa0725810:CDS |
| GTTTCTGTTTGTGATGTGGT+GGG | 0.553849 | 5_1:-25708270 | None:intergenic |
| TCATAATCAAGTACTGAGGT+AGG | 0.557713 | 5_1:-25708210 | None:intergenic |
| CATAGTATGCTATATTGGGT+TGG | 0.557895 | 5_1:-25708731 | None:intergenic |
| AGAAGTATGCTTGTAGGCGC+AGG | 0.559031 | 5_1:+25708486 | Msa0725810:CDS |
| GTGTTGAAATCCTCTGTGGT+GGG | 0.563237 | 5_1:-25708246 | None:intergenic |
| ACCACGAGAAGTATGCTTGT+AGG | 0.566681 | 5_1:+25708480 | Msa0725810:CDS |
| AGACCCTAATGAAGCTGCAA+AGG | 0.568759 | 5_1:+25708914 | Msa0725810:CDS |
| AGTGTTGAAATCCTCTGTGG+TGG | 0.573158 | 5_1:-25708247 | None:intergenic |
| GAGAAATCTTCATGAGCAAG+AGG | 0.580785 | 5_1:-25707545 | None:intergenic |
| ATAGGTTGTACGCTCCATGA+TGG | 0.581466 | 5_1:-25708768 | None:intergenic |
| TGAACAAAGTGATATTTCCC+AGG | 0.582852 | 5_1:+25708320 | Msa0725810:CDS |
| GGGTTCCATGGAAACTGTTG+TGG | 0.589831 | 5_1:-25708684 | None:intergenic |
| ACACAAGATTGAGTTGCGAT+AGG | 0.596525 | 5_1:-25708786 | None:intergenic |
| AATGGATTTGCATCTACAGG+TGG | 0.608182 | 5_1:+25708984 | Msa0725810:CDS |
| ATTGGCTTTCAATACTGATG+AGG | 0.608635 | 5_1:-25709033 | None:intergenic |
| TTGATAATGTAGAGTTACAA+GGG | 0.611715 | 5_1:-25707369 | None:intergenic |
| GCCTACAAGCATACTTCTCG+TGG | 0.629329 | 5_1:-25708481 | None:intergenic |
| ACACTTGGAATCAAAAGTGG+TGG | 0.634859 | 5_1:+25708951 | Msa0725810:CDS |
| CAAAGATATTGGACTGCCGG+AGG | 0.649186 | 5_1:+25708456 | Msa0725810:CDS |
| AAATCTTCATGAGCAAGAGG+AGG | 0.659290 | 5_1:-25707542 | None:intergenic |
| ACCCAATATAGCATACTATG+GGG | 0.674775 | 5_1:+25708734 | Msa0725810:CDS |
| ACTCATTTGACGATTATGTG+AGG | 0.678683 | 5_1:-25708547 | None:intergenic |
| CCCAATATAGCATACTATGG+GGG | 0.689551 | 5_1:+25708735 | Msa0725810:CDS |
| TTCTTCATAATCAAGTACTG+AGG | 0.698198 | 5_1:-25708214 | None:intergenic |
| GGGAGTGTTGAAATCCTCTG+TGG | 0.719304 | 5_1:-25708250 | None:intergenic |
| AAGAGGAGGAGAAAACTCAG+AGG | 0.721417 | 5_1:-25707528 | None:intergenic |
| AGGTGGTGATAAGAATCATG+TGG | 0.723179 | 5_1:+25709001 | Msa0725810:CDS |
| AGCCTCAAAACCCACCACAG+AGG | 0.733290 | 5_1:+25708236 | Msa0725810:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTCTAAAAAAATCATT+AGG | - | chr5_1:25709423-25709442 | None:intergenic | 10.0% |
| !!! | ATTTTTTTAGAATAAATATC+AGG | + | chr5_1:25709427-25709446 | Msa0725810:intron | 10.0% |
| !!! | TTTATTCTAAAAAAATCATT+AGG | - | chr5_1:25709423-25709442 | None:intergenic | 10.0% |
| !!! | ATTTTTTTAGAATAAATATC+AGG | + | chr5_1:25709427-25709446 | Msa0725810:intron | 10.0% |
| !!! | AAATTTAATTACTTCTAGTT+AGG | + | chr5_1:25707674-25707693 | Msa0725810:intron | 15.0% |
| !!! | TGAAATATATACAATGTTTT+TGG | + | chr5_1:25707737-25707756 | Msa0725810:intron | 15.0% |
| !! | GATTTATTGTGAATTATTAA+TGG | - | chr5_1:25707842-25707861 | None:intergenic | 15.0% |
| !! | AATAATTCACAATAAATCAT+AGG | + | chr5_1:25707844-25707863 | Msa0725810:intron | 15.0% |
| !!! | ACTTTGAGTTTATTTTTTAT+TGG | + | chr5_1:25708013-25708032 | Msa0725810:intron | 15.0% |
| !! | AAGATATTAAACTAAAAGTT+AGG | - | chr5_1:25708055-25708074 | None:intergenic | 15.0% |
| !!! | ATGAAAAATATTTAACTTTG+TGG | + | chr5_1:25708122-25708141 | Msa0725810:intron | 15.0% |
| !!! | AAATTTAATTACTTCTAGTT+AGG | + | chr5_1:25707674-25707693 | Msa0725810:intron | 15.0% |
| !!! | TGAAATATATACAATGTTTT+TGG | + | chr5_1:25707737-25707756 | Msa0725810:intron | 15.0% |
| !! | GATTTATTGTGAATTATTAA+TGG | - | chr5_1:25707842-25707861 | None:intergenic | 15.0% |
| !! | AATAATTCACAATAAATCAT+AGG | + | chr5_1:25707844-25707863 | Msa0725810:intron | 15.0% |
| !!! | ACTTTGAGTTTATTTTTTAT+TGG | + | chr5_1:25708013-25708032 | Msa0725810:intron | 15.0% |
| !! | AAGATATTAAACTAAAAGTT+AGG | - | chr5_1:25708055-25708074 | None:intergenic | 15.0% |
| !!! | ATGAAAAATATTTAACTTTG+TGG | + | chr5_1:25708122-25708141 | Msa0725810:intron | 15.0% |
| !!! | TTTTTGTTGTTTTTGTTTCT+TGG | - | chr5_1:25707405-25707424 | None:intergenic | 20.0% |
| !! | TTACAAGTAATTGTGATTAA+AGG | + | chr5_1:25707874-25707893 | Msa0725810:intron | 20.0% |
| !! | GAATAAAAAATAATATGAGC+TGG | - | chr5_1:25707942-25707961 | None:intergenic | 20.0% |
| !! | TGATAAACAATGATTAGATT+AGG | - | chr5_1:25708165-25708184 | None:intergenic | 20.0% |
| !! | TCTTCAATTCTTAATTTCTT+AGG | - | chr5_1:25708897-25708916 | None:intergenic | 20.0% |
| !!! | TTTTTGTTGTTTTTGTTTCT+TGG | - | chr5_1:25707405-25707424 | None:intergenic | 20.0% |
| !! | TTACAAGTAATTGTGATTAA+AGG | + | chr5_1:25707874-25707893 | Msa0725810:intron | 20.0% |
| !! | GAATAAAAAATAATATGAGC+TGG | - | chr5_1:25707942-25707961 | None:intergenic | 20.0% |
| !! | TGATAAACAATGATTAGATT+AGG | - | chr5_1:25708165-25708184 | None:intergenic | 20.0% |
| !! | TCTTCAATTCTTAATTTCTT+AGG | - | chr5_1:25708897-25708916 | None:intergenic | 20.0% |
| !!! | TTGATAATGTAGAGTTACAA+GGG | - | chr5_1:25707372-25707391 | None:intergenic | 25.0% |
| !! | ATTCAACCATAAAGCTTTTT+GGG | + | chr5_1:25707468-25707487 | Msa0725810:CDS | 25.0% |
| ! | GAATTCTTCAAAGAGATATA+AGG | + | chr5_1:25707616-25707635 | Msa0725810:CDS | 25.0% |
| ! | AAGATCAAATGACAAAGAAA+AGG | + | chr5_1:25709379-25709398 | Msa0725810:intron | 25.0% |
| !!! | TTGATAATGTAGAGTTACAA+GGG | - | chr5_1:25707372-25707391 | None:intergenic | 25.0% |
| !! | ATTCAACCATAAAGCTTTTT+GGG | + | chr5_1:25707468-25707487 | Msa0725810:CDS | 25.0% |
| ! | GAATTCTTCAAAGAGATATA+AGG | + | chr5_1:25707616-25707635 | Msa0725810:CDS | 25.0% |
| ! | AAGATCAAATGACAAAGAAA+AGG | + | chr5_1:25709379-25709398 | Msa0725810:intron | 25.0% |
| !! | CTTGATAATGTAGAGTTACA+AGG | - | chr5_1:25707373-25707392 | None:intergenic | 30.0% |
| CATTAGTCATATCATATCTC+TGG | - | chr5_1:25707448-25707467 | None:intergenic | 30.0% | |
| ! | GATTCAACCATAAAGCTTTT+TGG | + | chr5_1:25707467-25707486 | Msa0725810:CDS | 30.0% |
| TGTGTTGTGTGTTTGAAAAA+TGG | - | chr5_1:25707498-25707517 | None:intergenic | 30.0% | |
| TTTGAAGAATTCACTTCAAG+TGG | - | chr5_1:25707608-25707627 | None:intergenic | 30.0% | |
| TGAAGTCTATAATCCTAAAC+TGG | + | chr5_1:25707968-25707987 | Msa0725810:intron | 30.0% | |
| TTAAACTAAAAGTTAGGAGC+TGG | - | chr5_1:25708049-25708068 | None:intergenic | 30.0% | |
| ! | TAACTTTGTGGTTCATCTTT+TGG | + | chr5_1:25708134-25708153 | Msa0725810:intron | 30.0% |
| ATCAATTTCAGAAACCATCA+AGG | + | chr5_1:25708181-25708200 | Msa0725810:intron | 30.0% | |
| ! | TTCTTCATAATCAAGTACTG+AGG | - | chr5_1:25708217-25708236 | None:intergenic | 30.0% |
| GCAAAAACTGTCAAAGATAT+TGG | + | chr5_1:25708445-25708464 | Msa0725810:CDS | 30.0% | |
| AGTGAAGTTGAAGACATAAT+AGG | - | chr5_1:25708600-25708619 | None:intergenic | 30.0% | |
| AAAATGAATGTTGGATCAGA+AGG | + | chr5_1:25708627-25708646 | Msa0725810:CDS | 30.0% | |
| AACCCAATATAGCATACTAT+GGG | + | chr5_1:25708733-25708752 | Msa0725810:CDS | 30.0% | |
| TTCCAAGTAAACCTACTTTA+GGG | + | chr5_1:25708808-25708827 | Msa0725810:CDS | 30.0% | |
| TTAACACTTGGAATCAAAAG+TGG | + | chr5_1:25708948-25708967 | Msa0725810:CDS | 30.0% | |
| CTATAATTTACAGTTGACAC+AGG | - | chr5_1:25709193-25709212 | None:intergenic | 30.0% | |
| !! | GTGTTTCTGAAATAGATCAT+AGG | + | chr5_1:25709238-25709257 | Msa0725810:intron | 30.0% |
| CTCTGTAGTAGTAATATTGT+AGG | + | chr5_1:25709488-25709507 | Msa0725810:CDS | 30.0% | |
| !! | CTTGATAATGTAGAGTTACA+AGG | - | chr5_1:25707373-25707392 | None:intergenic | 30.0% |
| CATTAGTCATATCATATCTC+TGG | - | chr5_1:25707448-25707467 | None:intergenic | 30.0% | |
| ! | GATTCAACCATAAAGCTTTT+TGG | + | chr5_1:25707467-25707486 | Msa0725810:CDS | 30.0% |
| TGTGTTGTGTGTTTGAAAAA+TGG | - | chr5_1:25707498-25707517 | None:intergenic | 30.0% | |
| TTTGAAGAATTCACTTCAAG+TGG | - | chr5_1:25707608-25707627 | None:intergenic | 30.0% | |
| TGAAGTCTATAATCCTAAAC+TGG | + | chr5_1:25707968-25707987 | Msa0725810:intron | 30.0% | |
| TTAAACTAAAAGTTAGGAGC+TGG | - | chr5_1:25708049-25708068 | None:intergenic | 30.0% | |
| ! | TAACTTTGTGGTTCATCTTT+TGG | + | chr5_1:25708134-25708153 | Msa0725810:intron | 30.0% |
| ATCAATTTCAGAAACCATCA+AGG | + | chr5_1:25708181-25708200 | Msa0725810:intron | 30.0% | |
| ! | TTCTTCATAATCAAGTACTG+AGG | - | chr5_1:25708217-25708236 | None:intergenic | 30.0% |
| GCAAAAACTGTCAAAGATAT+TGG | + | chr5_1:25708445-25708464 | Msa0725810:CDS | 30.0% | |
| AGTGAAGTTGAAGACATAAT+AGG | - | chr5_1:25708600-25708619 | None:intergenic | 30.0% | |
| AAAATGAATGTTGGATCAGA+AGG | + | chr5_1:25708627-25708646 | Msa0725810:CDS | 30.0% | |
| AACCCAATATAGCATACTAT+GGG | + | chr5_1:25708733-25708752 | Msa0725810:CDS | 30.0% | |
| TTCCAAGTAAACCTACTTTA+GGG | + | chr5_1:25708808-25708827 | Msa0725810:CDS | 30.0% | |
| TTAACACTTGGAATCAAAAG+TGG | + | chr5_1:25708948-25708967 | Msa0725810:CDS | 30.0% | |
| CTATAATTTACAGTTGACAC+AGG | - | chr5_1:25709193-25709212 | None:intergenic | 30.0% | |
| !! | GTGTTTCTGAAATAGATCAT+AGG | + | chr5_1:25709238-25709257 | Msa0725810:intron | 30.0% |
| CTCTGTAGTAGTAATATTGT+AGG | + | chr5_1:25709488-25709507 | Msa0725810:CDS | 30.0% | |
| TCTTTCAAGAGACCAATAGT+AGG | + | chr5_1:25707916-25707935 | Msa0725810:intron | 35.0% | |
| GTTGCAAATCAAACCAGTTT+AGG | - | chr5_1:25707984-25708003 | None:intergenic | 35.0% | |
| !! | TCATAATCAAGTACTGAGGT+AGG | - | chr5_1:25708213-25708232 | None:intergenic | 35.0% |
| AGAAGTTTCTGTTTGTGATG+TGG | - | chr5_1:25708277-25708296 | None:intergenic | 35.0% | |
| ACTTTGTTCATCAACTTTCG+TGG | - | chr5_1:25708310-25708329 | None:intergenic | 35.0% | |
| TGAACAAAGTGATATTTCCC+AGG | + | chr5_1:25708320-25708339 | Msa0725810:CDS | 35.0% | |
| ! | GGACATGGAAGAATTTTGTT+TGG | - | chr5_1:25708354-25708373 | None:intergenic | 35.0% |
| ACTCATTTGACGATTATGTG+AGG | - | chr5_1:25708550-25708569 | None:intergenic | 35.0% | |
| ! | ATGAGTACTGTCTTGAACTT+TGG | + | chr5_1:25708564-25708583 | Msa0725810:CDS | 35.0% |
| CTCGACAAGAAAATGAATGT+TGG | + | chr5_1:25708618-25708637 | Msa0725810:CDS | 35.0% | |
| ! | TTTTTCCACAACAGTTTCCA+TGG | + | chr5_1:25708679-25708698 | Msa0725810:CDS | 35.0% |
| AAACAGGATAACACATTGCT+GGG | - | chr5_1:25708707-25708726 | None:intergenic | 35.0% | |
| !! | ATATTGGGTTGGAATGAAAC+AGG | - | chr5_1:25708723-25708742 | None:intergenic | 35.0% |
| CATAGTATGCTATATTGGGT+TGG | - | chr5_1:25708734-25708753 | None:intergenic | 35.0% | |
| CAACCCAATATAGCATACTA+TGG | + | chr5_1:25708732-25708751 | Msa0725810:CDS | 35.0% | |
| ACCCAATATAGCATACTATG+GGG | + | chr5_1:25708734-25708753 | Msa0725810:CDS | 35.0% | |
| GTTCCAAGTAAACCTACTTT+AGG | + | chr5_1:25708807-25708826 | Msa0725810:CDS | 35.0% | |
| TTCCCTAAAGTAGGTTTACT+TGG | - | chr5_1:25708813-25708832 | None:intergenic | 35.0% | |
| CTTGAATGTTTCCCTAAAGT+AGG | - | chr5_1:25708822-25708841 | None:intergenic | 35.0% | |
| TTAGGGAAACATTCAAGAGA+TGG | + | chr5_1:25708825-25708844 | Msa0725810:CDS | 35.0% | |
| ! | GGTTCTAATTGGTTAACACT+TGG | + | chr5_1:25708936-25708955 | Msa0725810:CDS | 35.0% |
| ! | TTCAATGGATTTGCATCTAC+AGG | + | chr5_1:25708981-25709000 | Msa0725810:CDS | 35.0% |
| !! | ATTGGCTTTCAATACTGATG+AGG | - | chr5_1:25709036-25709055 | None:intergenic | 35.0% |
| TTCCATGAGAGGATTTGATT+GGG | + | chr5_1:25709083-25709102 | Msa0725810:intron | 35.0% | |
| TCTTTCAAGAGACCAATAGT+AGG | + | chr5_1:25707916-25707935 | Msa0725810:intron | 35.0% | |
| GTTGCAAATCAAACCAGTTT+AGG | - | chr5_1:25707984-25708003 | None:intergenic | 35.0% | |
| !! | TCATAATCAAGTACTGAGGT+AGG | - | chr5_1:25708213-25708232 | None:intergenic | 35.0% |
| AGAAGTTTCTGTTTGTGATG+TGG | - | chr5_1:25708277-25708296 | None:intergenic | 35.0% | |
| ACTTTGTTCATCAACTTTCG+TGG | - | chr5_1:25708310-25708329 | None:intergenic | 35.0% | |
| TGAACAAAGTGATATTTCCC+AGG | + | chr5_1:25708320-25708339 | Msa0725810:CDS | 35.0% | |
| ! | GGACATGGAAGAATTTTGTT+TGG | - | chr5_1:25708354-25708373 | None:intergenic | 35.0% |
| ACTCATTTGACGATTATGTG+AGG | - | chr5_1:25708550-25708569 | None:intergenic | 35.0% | |
| ! | ATGAGTACTGTCTTGAACTT+TGG | + | chr5_1:25708564-25708583 | Msa0725810:CDS | 35.0% |
| CTCGACAAGAAAATGAATGT+TGG | + | chr5_1:25708618-25708637 | Msa0725810:CDS | 35.0% | |
| ! | TTTTTCCACAACAGTTTCCA+TGG | + | chr5_1:25708679-25708698 | Msa0725810:CDS | 35.0% |
| AAACAGGATAACACATTGCT+GGG | - | chr5_1:25708707-25708726 | None:intergenic | 35.0% | |
| !! | ATATTGGGTTGGAATGAAAC+AGG | - | chr5_1:25708723-25708742 | None:intergenic | 35.0% |
| CATAGTATGCTATATTGGGT+TGG | - | chr5_1:25708734-25708753 | None:intergenic | 35.0% | |
| CAACCCAATATAGCATACTA+TGG | + | chr5_1:25708732-25708751 | Msa0725810:CDS | 35.0% | |
| ACCCAATATAGCATACTATG+GGG | + | chr5_1:25708734-25708753 | Msa0725810:CDS | 35.0% | |
| GTTCCAAGTAAACCTACTTT+AGG | + | chr5_1:25708807-25708826 | Msa0725810:CDS | 35.0% | |
| TTCCCTAAAGTAGGTTTACT+TGG | - | chr5_1:25708813-25708832 | None:intergenic | 35.0% | |
| CTTGAATGTTTCCCTAAAGT+AGG | - | chr5_1:25708822-25708841 | None:intergenic | 35.0% | |
| TTAGGGAAACATTCAAGAGA+TGG | + | chr5_1:25708825-25708844 | Msa0725810:CDS | 35.0% | |
| ! | GGTTCTAATTGGTTAACACT+TGG | + | chr5_1:25708936-25708955 | Msa0725810:CDS | 35.0% |
| ! | TTCAATGGATTTGCATCTAC+AGG | + | chr5_1:25708981-25709000 | Msa0725810:CDS | 35.0% |
| !! | ATTGGCTTTCAATACTGATG+AGG | - | chr5_1:25709036-25709055 | None:intergenic | 35.0% |
| TTCCATGAGAGGATTTGATT+GGG | + | chr5_1:25709083-25709102 | Msa0725810:intron | 35.0% | |
| GGTTCTCCCAAAAAGCTTTA+TGG | - | chr5_1:25707477-25707496 | None:intergenic | 40.0% | |
| AAATCTTCATGAGCAAGAGG+AGG | - | chr5_1:25707545-25707564 | None:intergenic | 40.0% | |
| GAGAAATCTTCATGAGCAAG+AGG | - | chr5_1:25707548-25707567 | None:intergenic | 40.0% | |
| GTTAGGTGTATGCAATCTTG+TGG | + | chr5_1:25707691-25707710 | Msa0725810:intron | 40.0% | |
| ! | AATATGAGCTGGCCTACTAT+TGG | - | chr5_1:25707931-25707950 | None:intergenic | 40.0% |
| GTTTCTGTTTGTGATGTGGT+GGG | - | chr5_1:25708273-25708292 | None:intergenic | 40.0% | |
| AGTTTCTGTTTGTGATGTGG+TGG | - | chr5_1:25708274-25708293 | None:intergenic | 40.0% | |
| ! | TTTGTTTGGAGCTTTGTCCT+GGG | - | chr5_1:25708340-25708359 | None:intergenic | 40.0% |
| !! | TTTTGTTTGGAGCTTTGTCC+TGG | - | chr5_1:25708341-25708360 | None:intergenic | 40.0% |
| ! | ATGCTTTTGCATCTTGGACA+TGG | - | chr5_1:25708369-25708388 | None:intergenic | 40.0% |
| ! | GTGTCTATGCTTTTGCATCT+TGG | - | chr5_1:25708375-25708394 | None:intergenic | 40.0% |
| ! | ACAGTTTTTGCAGAAGTGAC+GGG | - | chr5_1:25708436-25708455 | None:intergenic | 40.0% |
| ! | GACAGTTTTTGCAGAAGTGA+CGG | - | chr5_1:25708437-25708456 | None:intergenic | 40.0% |
| TGTCAAAGATATTGGACTGC+CGG | + | chr5_1:25708453-25708472 | Msa0725810:CDS | 40.0% | |
| TTGACGATTATGTGAGGCAT+CGG | - | chr5_1:25708544-25708563 | None:intergenic | 40.0% | |
| GAAACAGGATAACACATTGC+TGG | - | chr5_1:25708708-25708727 | None:intergenic | 40.0% | |
| CCCCCATAGTATGCTATATT+GGG | - | chr5_1:25708738-25708757 | None:intergenic | 40.0% | |
| CCCAATATAGCATACTATGG+GGG | + | chr5_1:25708735-25708754 | Msa0725810:CDS | 40.0% | |
| ACCCCCATAGTATGCTATAT+TGG | - | chr5_1:25708739-25708758 | None:intergenic | 40.0% | |
| ! | ACACAAGATTGAGTTGCGAT+AGG | - | chr5_1:25708789-25708808 | None:intergenic | 40.0% |
| AACCCTTTGCAGCTTCATTA+GGG | - | chr5_1:25708920-25708939 | None:intergenic | 40.0% | |
| ! | AAGCTGCAAAGGGTTCTAAT+TGG | + | chr5_1:25708925-25708944 | Msa0725810:CDS | 40.0% |
| ACACTTGGAATCAAAAGTGG+TGG | + | chr5_1:25708951-25708970 | Msa0725810:CDS | 40.0% | |
| !! | AGTGGTGGAGCATTTTTCAA+TGG | + | chr5_1:25708966-25708985 | Msa0725810:CDS | 40.0% |
| ! | AATGGATTTGCATCTACAGG+TGG | + | chr5_1:25708984-25709003 | Msa0725810:CDS | 40.0% |
| AGGTGGTGATAAGAATCATG+TGG | + | chr5_1:25709001-25709020 | Msa0725810:CDS | 40.0% | |
| AAAGACCTTGATAAAGCTGC+AGG | - | chr5_1:25709059-25709078 | None:intergenic | 40.0% | |
| GTTCCATGAGAGGATTTGAT+TGG | + | chr5_1:25709082-25709101 | Msa0725810:intron | 40.0% | |
| TTCCCAATCAAATCCTCTCA+TGG | - | chr5_1:25709088-25709107 | None:intergenic | 40.0% | |
| ATTTACAGTTGACACAGGCA+TGG | - | chr5_1:25709188-25709207 | None:intergenic | 40.0% | |
| GGTTCTCCCAAAAAGCTTTA+TGG | - | chr5_1:25707477-25707496 | None:intergenic | 40.0% | |
| AAATCTTCATGAGCAAGAGG+AGG | - | chr5_1:25707545-25707564 | None:intergenic | 40.0% | |
| GAGAAATCTTCATGAGCAAG+AGG | - | chr5_1:25707548-25707567 | None:intergenic | 40.0% | |
| GTTAGGTGTATGCAATCTTG+TGG | + | chr5_1:25707691-25707710 | Msa0725810:intron | 40.0% | |
| ! | AATATGAGCTGGCCTACTAT+TGG | - | chr5_1:25707931-25707950 | None:intergenic | 40.0% |
| GTTTCTGTTTGTGATGTGGT+GGG | - | chr5_1:25708273-25708292 | None:intergenic | 40.0% | |
| AGTTTCTGTTTGTGATGTGG+TGG | - | chr5_1:25708274-25708293 | None:intergenic | 40.0% | |
| ! | TTTGTTTGGAGCTTTGTCCT+GGG | - | chr5_1:25708340-25708359 | None:intergenic | 40.0% |
| !! | TTTTGTTTGGAGCTTTGTCC+TGG | - | chr5_1:25708341-25708360 | None:intergenic | 40.0% |
| ! | ATGCTTTTGCATCTTGGACA+TGG | - | chr5_1:25708369-25708388 | None:intergenic | 40.0% |
| ! | GTGTCTATGCTTTTGCATCT+TGG | - | chr5_1:25708375-25708394 | None:intergenic | 40.0% |
| ! | ACAGTTTTTGCAGAAGTGAC+GGG | - | chr5_1:25708436-25708455 | None:intergenic | 40.0% |
| ! | GACAGTTTTTGCAGAAGTGA+CGG | - | chr5_1:25708437-25708456 | None:intergenic | 40.0% |
| TGTCAAAGATATTGGACTGC+CGG | + | chr5_1:25708453-25708472 | Msa0725810:CDS | 40.0% | |
| TTGACGATTATGTGAGGCAT+CGG | - | chr5_1:25708544-25708563 | None:intergenic | 40.0% | |
| GAAACAGGATAACACATTGC+TGG | - | chr5_1:25708708-25708727 | None:intergenic | 40.0% | |
| CCCCCATAGTATGCTATATT+GGG | - | chr5_1:25708738-25708757 | None:intergenic | 40.0% | |
| CCCAATATAGCATACTATGG+GGG | + | chr5_1:25708735-25708754 | Msa0725810:CDS | 40.0% | |
| ACCCCCATAGTATGCTATAT+TGG | - | chr5_1:25708739-25708758 | None:intergenic | 40.0% | |
| ! | ACACAAGATTGAGTTGCGAT+AGG | - | chr5_1:25708789-25708808 | None:intergenic | 40.0% |
| AACCCTTTGCAGCTTCATTA+GGG | - | chr5_1:25708920-25708939 | None:intergenic | 40.0% | |
| ! | AAGCTGCAAAGGGTTCTAAT+TGG | + | chr5_1:25708925-25708944 | Msa0725810:CDS | 40.0% |
| ACACTTGGAATCAAAAGTGG+TGG | + | chr5_1:25708951-25708970 | Msa0725810:CDS | 40.0% | |
| !! | AGTGGTGGAGCATTTTTCAA+TGG | + | chr5_1:25708966-25708985 | Msa0725810:CDS | 40.0% |
| ! | AATGGATTTGCATCTACAGG+TGG | + | chr5_1:25708984-25709003 | Msa0725810:CDS | 40.0% |
| AGGTGGTGATAAGAATCATG+TGG | + | chr5_1:25709001-25709020 | Msa0725810:CDS | 40.0% | |
| AAAGACCTTGATAAAGCTGC+AGG | - | chr5_1:25709059-25709078 | None:intergenic | 40.0% | |
| GTTCCATGAGAGGATTTGAT+TGG | + | chr5_1:25709082-25709101 | Msa0725810:intron | 40.0% | |
| TTCCCAATCAAATCCTCTCA+TGG | - | chr5_1:25709088-25709107 | None:intergenic | 40.0% | |
| ATTTACAGTTGACACAGGCA+TGG | - | chr5_1:25709188-25709207 | None:intergenic | 40.0% | |
| AAGAGGAGGAGAAAACTCAG+AGG | - | chr5_1:25707531-25707550 | None:intergenic | 45.0% | |
| GAGGTAGGTTCTTTCCTTGA+TGG | - | chr5_1:25708198-25708217 | None:intergenic | 45.0% | |
| GTGTTGAAATCCTCTGTGGT+GGG | - | chr5_1:25708249-25708268 | None:intergenic | 45.0% | |
| ! | AGTGTTGAAATCCTCTGTGG+TGG | - | chr5_1:25708250-25708269 | None:intergenic | 45.0% |
| ! | CAGTTTTTGCAGAAGTGACG+GGG | - | chr5_1:25708435-25708454 | None:intergenic | 45.0% |
| ! | ACCACGAGAAGTATGCTTGT+AGG | + | chr5_1:25708480-25708499 | Msa0725810:CDS | 45.0% |
| GGATCAGAAGGTGAAACATC+TGG | + | chr5_1:25708639-25708658 | Msa0725810:CDS | 45.0% | |
| TAACACATTGCTGGGTTCCA+TGG | - | chr5_1:25708699-25708718 | None:intergenic | 45.0% | |
| AGCATACTATGGGGGTTGTT+TGG | + | chr5_1:25708743-25708762 | Msa0725810:CDS | 45.0% | |
| TAGGTTGTACGCTCCATGAT+GGG | - | chr5_1:25708770-25708789 | None:intergenic | 45.0% | |
| ATAGGTTGTACGCTCCATGA+TGG | - | chr5_1:25708771-25708790 | None:intergenic | 45.0% | |
| AGACCCTAATGAAGCTGCAA+AGG | + | chr5_1:25708914-25708933 | Msa0725810:CDS | 45.0% | |
| GACCCTAATGAAGCTGCAAA+GGG | + | chr5_1:25708915-25708934 | Msa0725810:CDS | 45.0% | |
| GAACCCTTTGCAGCTTCATT+AGG | - | chr5_1:25708921-25708940 | None:intergenic | 45.0% | |
| CCTTGATAAAGCTGCAGGAT+TGG | - | chr5_1:25709054-25709073 | None:intergenic | 45.0% | |
| ! | CCAATCCTGCAGCTTTATCA+AGG | + | chr5_1:25709051-25709070 | Msa0725810:intron | 45.0% |
| ! | GGTCTTTTGTGTTCCATGAG+AGG | + | chr5_1:25709072-25709091 | Msa0725810:intron | 45.0% |
| !! | AATATGTAGCACCGACTCCT+CGG | + | chr5_1:25709106-25709125 | Msa0725810:intron | 45.0% |
| AAGAGGAGGAGAAAACTCAG+AGG | - | chr5_1:25707531-25707550 | None:intergenic | 45.0% | |
| GAGGTAGGTTCTTTCCTTGA+TGG | - | chr5_1:25708198-25708217 | None:intergenic | 45.0% | |
| GTGTTGAAATCCTCTGTGGT+GGG | - | chr5_1:25708249-25708268 | None:intergenic | 45.0% | |
| ! | AGTGTTGAAATCCTCTGTGG+TGG | - | chr5_1:25708250-25708269 | None:intergenic | 45.0% |
| ! | CAGTTTTTGCAGAAGTGACG+GGG | - | chr5_1:25708435-25708454 | None:intergenic | 45.0% |
| ! | ACCACGAGAAGTATGCTTGT+AGG | + | chr5_1:25708480-25708499 | Msa0725810:CDS | 45.0% |
| GGATCAGAAGGTGAAACATC+TGG | + | chr5_1:25708639-25708658 | Msa0725810:CDS | 45.0% | |
| TAACACATTGCTGGGTTCCA+TGG | - | chr5_1:25708699-25708718 | None:intergenic | 45.0% | |
| AGCATACTATGGGGGTTGTT+TGG | + | chr5_1:25708743-25708762 | Msa0725810:CDS | 45.0% | |
| TAGGTTGTACGCTCCATGAT+GGG | - | chr5_1:25708770-25708789 | None:intergenic | 45.0% | |
| ATAGGTTGTACGCTCCATGA+TGG | - | chr5_1:25708771-25708790 | None:intergenic | 45.0% | |
| AGACCCTAATGAAGCTGCAA+AGG | + | chr5_1:25708914-25708933 | Msa0725810:CDS | 45.0% | |
| GACCCTAATGAAGCTGCAAA+GGG | + | chr5_1:25708915-25708934 | Msa0725810:CDS | 45.0% | |
| GAACCCTTTGCAGCTTCATT+AGG | - | chr5_1:25708921-25708940 | None:intergenic | 45.0% | |
| CCTTGATAAAGCTGCAGGAT+TGG | - | chr5_1:25709054-25709073 | None:intergenic | 45.0% | |
| ! | CCAATCCTGCAGCTTTATCA+AGG | + | chr5_1:25709051-25709070 | Msa0725810:intron | 45.0% |
| ! | GGTCTTTTGTGTTCCATGAG+AGG | + | chr5_1:25709072-25709091 | Msa0725810:intron | 45.0% |
| !! | AATATGTAGCACCGACTCCT+CGG | + | chr5_1:25709106-25709125 | Msa0725810:intron | 45.0% |
| !!! | ATCCTCTGTGGTGGGTTTTG+AGG | - | chr5_1:25708241-25708260 | None:intergenic | 50.0% |
| !! | GGGAGTGTTGAAATCCTCTG+TGG | - | chr5_1:25708253-25708272 | None:intergenic | 50.0% |
| CAAAGATATTGGACTGCCGG+AGG | + | chr5_1:25708456-25708475 | Msa0725810:CDS | 50.0% | |
| CATACTTCTCGTGGTTCCTC+CGG | - | chr5_1:25708475-25708494 | None:intergenic | 50.0% | |
| GCCTACAAGCATACTTCTCG+TGG | - | chr5_1:25708484-25708503 | None:intergenic | 50.0% | |
| ! | AGAAGTATGCTTGTAGGCGC+AGG | + | chr5_1:25708486-25708505 | Msa0725810:CDS | 50.0% |
| GGGTTCCATGGAAACTGTTG+TGG | - | chr5_1:25708687-25708706 | None:intergenic | 50.0% | |
| !!! | ATCCTCTGTGGTGGGTTTTG+AGG | - | chr5_1:25708241-25708260 | None:intergenic | 50.0% |
| !! | GGGAGTGTTGAAATCCTCTG+TGG | - | chr5_1:25708253-25708272 | None:intergenic | 50.0% |
| CAAAGATATTGGACTGCCGG+AGG | + | chr5_1:25708456-25708475 | Msa0725810:CDS | 50.0% | |
| CATACTTCTCGTGGTTCCTC+CGG | - | chr5_1:25708475-25708494 | None:intergenic | 50.0% | |
| GCCTACAAGCATACTTCTCG+TGG | - | chr5_1:25708484-25708503 | None:intergenic | 50.0% | |
| ! | AGAAGTATGCTTGTAGGCGC+AGG | + | chr5_1:25708486-25708505 | Msa0725810:CDS | 50.0% |
| GGGTTCCATGGAAACTGTTG+TGG | - | chr5_1:25708687-25708706 | None:intergenic | 50.0% | |
| AGCCTCAAAACCCACCACAG+AGG | + | chr5_1:25708236-25708255 | Msa0725810:CDS | 55.0% | |
| !! | TTTTGCAGAAGTGACGGGGC+TGG | - | chr5_1:25708431-25708450 | None:intergenic | 55.0% |
| GGGGTTGTTTGGTCCCATCA+TGG | + | chr5_1:25708754-25708773 | Msa0725810:CDS | 55.0% | |
| ACGCCTTCAATCCGAGGAGT+CGG | - | chr5_1:25709120-25709139 | None:intergenic | 55.0% | |
| TACCGACGTGTGTCAGAGTC+CGG | + | chr5_1:25709145-25709164 | Msa0725810:intron | 55.0% | |
| GGACAGGACATTGAACCGAC+CGG | - | chr5_1:25709167-25709186 | None:intergenic | 55.0% | |
| CAGTTGACACAGGCATGGAC+AGG | - | chr5_1:25709183-25709202 | None:intergenic | 55.0% | |
| AGCCTCAAAACCCACCACAG+AGG | + | chr5_1:25708236-25708255 | Msa0725810:CDS | 55.0% | |
| !! | TTTTGCAGAAGTGACGGGGC+TGG | - | chr5_1:25708431-25708450 | None:intergenic | 55.0% |
| GGGGTTGTTTGGTCCCATCA+TGG | + | chr5_1:25708754-25708773 | Msa0725810:CDS | 55.0% | |
| ACGCCTTCAATCCGAGGAGT+CGG | - | chr5_1:25709120-25709139 | None:intergenic | 55.0% | |
| TACCGACGTGTGTCAGAGTC+CGG | + | chr5_1:25709145-25709164 | Msa0725810:intron | 55.0% | |
| GGACAGGACATTGAACCGAC+CGG | - | chr5_1:25709167-25709186 | None:intergenic | 55.0% | |
| CAGTTGACACAGGCATGGAC+AGG | - | chr5_1:25709183-25709202 | None:intergenic | 55.0% | |
| !! | GCACCGACTCCTCGGATTGA+AGG | + | chr5_1:25709114-25709133 | Msa0725810:intron | 60.0% |
| ACGAGCACGCCTTCAATCCG+AGG | - | chr5_1:25709126-25709145 | None:intergenic | 60.0% | |
| GACCGGACTCTGACACACGT+CGG | - | chr5_1:25709150-25709169 | None:intergenic | 60.0% | |
| GACGTGTGTCAGAGTCCGGT+CGG | + | chr5_1:25709149-25709168 | Msa0725810:intron | 60.0% | |
| !! | GCACCGACTCCTCGGATTGA+AGG | + | chr5_1:25709114-25709133 | Msa0725810:intron | 60.0% |
| ACGAGCACGCCTTCAATCCG+AGG | - | chr5_1:25709126-25709145 | None:intergenic | 60.0% | |
| GACCGGACTCTGACACACGT+CGG | - | chr5_1:25709150-25709169 | None:intergenic | 60.0% | |
| GACGTGTGTCAGAGTCCGGT+CGG | + | chr5_1:25709149-25709168 | Msa0725810:intron | 60.0% | |
| ! | GCAGAAGTGACGGGGCTGGT+TGG | - | chr5_1:25708427-25708446 | None:intergenic | 65.0% |
| ! | GCAGAAGTGACGGGGCTGGT+TGG | - | chr5_1:25708427-25708446 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 25707367 | 25709526 | 25707367 | ID=Msa0725810;Name=Msa0725810 |
| chr5_1 | mRNA | 25707367 | 25709526 | 25707367 | ID=Msa0725810-mRNA-1;Parent=Msa0725810;Name=Msa0725810-mRNA-1;_AED=0.31;_eAED=0.31;_QI=91|0.5|0.33|0.66|1|1|3|0|368 |
| chr5_1 | exon | 25707367 | 25707637 | 25707367 | ID=Msa0725810-mRNA-1:exon:9275;Parent=Msa0725810-mRNA-1 |
| chr5_1 | exon | 25708192 | 25709040 | 25708192 | ID=Msa0725810-mRNA-1:exon:9276;Parent=Msa0725810-mRNA-1 |
| chr5_1 | exon | 25709449 | 25709526 | 25709449 | ID=Msa0725810-mRNA-1:exon:9277;Parent=Msa0725810-mRNA-1 |
| chr5_1 | five_prime_UTR | 25707367 | 25707457 | 25707367 | ID=Msa0725810-mRNA-1:five_prime_utr;Parent=Msa0725810-mRNA-1 |
| chr5_1 | CDS | 25707458 | 25707637 | 25707458 | ID=Msa0725810-mRNA-1:cds;Parent=Msa0725810-mRNA-1 |
| chr5_1 | CDS | 25708192 | 25709040 | 25708192 | ID=Msa0725810-mRNA-1:cds;Parent=Msa0725810-mRNA-1 |
| chr5_1 | CDS | 25709449 | 25709526 | 25709449 | ID=Msa0725810-mRNA-1:cds;Parent=Msa0725810-mRNA-1 |
| Gene Sequence |
| Protein sequence |
