AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0726340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726340 MtrunA17_Chr5g0418191 93.103 435 27 3 1 434 1 433 0.0 830
Msa0726340 MtrunA17_Chr4g0042831 57.412 425 102 10 39 433 13 388 1.71e-144 417
Msa0726340 MtrunA17_Chr7g0218081 50.000 512 151 14 21 433 14 519 3.47e-143 419
Msa0726340 MtrunA17_Chr5g0445311 47.774 337 148 9 109 430 155 478 5.91e-83 265
Msa0726340 MtrunA17_Chr3g0101131 53.462 260 107 4 145 395 235 489 1.37e-81 262
Msa0726340 MtrunA17_Chr7g0263531 39.951 408 183 11 24 398 60 438 1.57e-81 258
Msa0726340 MtrunA17_Chr3g0079691 43.501 377 139 10 113 416 230 605 7.07e-81 263
Msa0726340 MtrunA17_Chr7g0243891 53.125 256 88 5 150 394 213 447 1.06e-78 253
Msa0726340 MtrunA17_Chr3g0106491 45.426 317 153 6 79 389 132 434 1.44e-78 252
Msa0726340 MtrunA17_Chr7g0249311 48.592 284 99 5 150 387 176 458 6.12e-76 249
Msa0726340 MtrunA17_Chr5g0432161 51.894 264 93 7 148 389 239 490 9.96e-75 244
Msa0726340 MtrunA17_Chr4g0004911 49.097 277 109 8 108 383 153 398 1.55e-72 236
Msa0726340 MtrunA17_Chr7g0249301 43.919 296 104 7 150 383 59 354 1.57e-66 217
Msa0726340 MtrunA17_Chr5g0447701 40.221 271 133 6 135 397 75 324 4.73e-51 177
Msa0726340 MtrunA17_Chr4g0074001 39.759 249 138 6 144 383 176 421 1.76e-49 176
Msa0726340 MtrunA17_Chr4g0074001 56.250 64 27 1 154 216 360 423 2.59e-16 80.9
Msa0726340 MtrunA17_Chr1g0188941 65.854 82 28 0 299 380 29 110 2.20e-35 127
Msa0726340 MtrunA17_Chr1g0188941 54.839 62 27 1 153 213 51 112 2.44e-18 80.5
Msa0726340 MtrunA17_Chr5g0447711 31.086 267 163 4 121 387 51 296 5.06e-34 129
Msa0726340 MtrunA17_Chr1g0194481 50.000 114 57 0 267 380 104 217 9.10e-32 123
Msa0726340 MtrunA17_Chr1g0194481 58.065 62 23 2 153 213 158 217 8.11e-16 78.2
Msa0726340 MtrunA17_Chr4g0051881 43.056 144 76 1 261 404 118 255 2.78e-31 122
Msa0726340 MtrunA17_Chr4g0051881 60.000 60 23 1 153 211 178 237 2.43e-16 79.7
Msa0726340 MtrunA17_Chr7g0270191 60.000 85 34 0 306 390 130 214 1.51e-29 116
Msa0726340 MtrunA17_Chr7g0270191 61.290 62 21 2 153 213 145 204 1.44e-16 80.1
Msa0726340 MtrunA17_Chr8g0335811 60.241 83 32 1 304 386 137 218 1.85e-28 112
Msa0726340 MtrunA17_Chr8g0335811 63.158 57 20 1 153 208 154 210 1.51e-16 78.6
Msa0726340 MtrunA17_Chr3g0129361 62.162 74 28 0 304 377 127 200 2.81e-28 111
Msa0726340 MtrunA17_Chr3g0129361 50.000 78 33 3 153 228 144 217 6.41e-15 73.6
Msa0726340 MtrunA17_Chr2g0294231 64.474 76 27 0 306 381 188 263 3.39e-28 114
Msa0726340 MtrunA17_Chr2g0294231 60.000 60 23 1 153 211 203 262 1.41e-15 78.2
Msa0726340 MtrunA17_Chr5g0443131 62.667 75 28 0 307 381 143 217 4.21e-28 113
Msa0726340 MtrunA17_Chr5g0443131 58.333 60 24 1 153 211 157 216 4.81e-16 78.6
Msa0726340 MtrunA17_Chr7g0224801 63.514 74 25 1 311 384 83 154 7.38e-27 105
Msa0726340 MtrunA17_Chr7g0224801 56.140 57 24 1 153 208 93 149 1.72e-15 74.3
Msa0726340 MtrunA17_Chr8g0383351 61.333 75 28 1 304 377 142 216 1.53e-26 107
Msa0726340 MtrunA17_Chr8g0383351 45.745 94 44 4 136 226 142 231 2.42e-15 75.1
Msa0726340 MtrunA17_Chr5g0418781 48.649 111 48 1 267 377 79 180 1.95e-26 107
Msa0726340 MtrunA17_Chr5g0418781 59.649 57 22 1 153 208 124 180 7.04e-15 74.7
Msa0726340 MtrunA17_Chr8g0386241 49.438 89 45 0 304 392 86 174 4.08e-26 104
Msa0726340 MtrunA17_Chr8g0386241 44.304 79 42 2 153 230 103 180 5.62e-14 70.1
Msa0726340 MtrunA17_Chr8g0383251 57.534 73 31 0 308 380 95 167 2.87e-25 102
Msa0726340 MtrunA17_Chr8g0383251 53.333 60 27 1 153 211 108 167 5.38e-13 67.4
Msa0726340 MtrunA17_Chr1g0150801 55.714 70 31 0 308 377 89 158 1.11e-23 97.1
Msa0726340 MtrunA17_Chr1g0150801 54.386 57 25 1 153 208 102 158 4.96e-13 67.0
Msa0726340 MtrunA17_Chr3g0129321 52.000 75 36 0 307 381 104 178 1.49e-23 97.8
Msa0726340 MtrunA17_Chr3g0129321 53.333 60 27 1 153 211 118 177 5.84e-14 70.5
Msa0726340 MtrunA17_Chr7g0248721 45.794 107 43 2 271 377 105 196 1.68e-23 98.2
Msa0726340 MtrunA17_Chr7g0248721 47.619 84 38 3 140 222 128 206 3.52e-15 74.3
Msa0726340 MtrunA17_Chr6g0485431 35.443 158 86 2 239 380 57 214 1.78e-23 100
Msa0726340 MtrunA17_Chr6g0485431 40.816 98 52 4 122 217 127 220 1.27e-13 72.0
Msa0726340 MtrunA17_Chr4g0068541 55.405 74 33 0 308 381 195 268 2.85e-23 101
Msa0726340 MtrunA17_Chr4g0068541 61.667 60 22 1 153 211 208 267 2.78e-16 80.5
Msa0726340 MtrunA17_Chr7g0270831 53.846 78 35 1 308 384 203 280 1.02e-22 99.8
Msa0726340 MtrunA17_Chr7g0270831 51.667 60 27 2 154 211 217 276 1.92e-12 68.6
Msa0726340 MtrunA17_Chr3g0099641 48.780 82 41 1 300 380 230 311 1.10e-22 100
Msa0726340 MtrunA17_Chr3g0099641 35.294 136 79 4 95 223 190 323 3.63e-15 77.4
Msa0726340 MtrunA17_Chr2g0288871 46.591 88 46 1 294 380 278 365 1.32e-22 100
Msa0726340 MtrunA17_Chr2g0288871 51.667 60 27 2 154 211 306 365 1.28e-12 69.7
Msa0726340 MtrunA17_Chr1g0189391 50.538 93 44 2 308 398 84 176 1.51e-22 97.8
Msa0726340 MtrunA17_Chr1g0189391 45.455 77 39 3 153 227 97 172 7.85e-12 66.2
Msa0726340 MtrunA17_Chr4g0025061 50.617 81 39 1 303 382 342 422 2.65e-22 99.8
Msa0726340 MtrunA17_Chr4g0025061 36.458 96 59 2 154 247 361 456 1.92e-11 66.2
Msa0726340 MtrunA17_Chr4g0051181 49.438 89 40 2 298 381 216 304 3.56e-22 98.6
Msa0726340 MtrunA17_Chr4g0051181 39.216 102 55 4 117 211 202 303 1.04e-13 72.8
Msa0726340 MtrunA17_Chr2g0322391 47.191 89 46 1 295 382 323 411 3.61e-22 99.4
Msa0726340 MtrunA17_Chr2g0322391 49.180 61 29 2 153 211 349 409 1.08e-11 67.0
Msa0726340 MtrunA17_Chr1g0188961 59.211 76 17 1 341 416 3 64 4.86e-22 89.4
Msa0726340 MtrunA17_Chr4g0075201 48.810 84 42 1 300 382 246 329 5.11e-22 98.2
Msa0726340 MtrunA17_Chr4g0075201 49.180 61 29 2 153 211 267 327 4.94e-12 67.8
Msa0726340 MtrunA17_Chr1g0147881 56.790 81 31 2 303 382 247 324 1.27e-21 95.5
Msa0726340 MtrunA17_Chr1g0147881 50.725 69 31 3 144 210 254 321 7.05e-13 69.3
Msa0726340 MtrunA17_Chr7g0216891 39.496 119 70 2 260 377 159 276 7.42e-21 95.1
Msa0726340 MtrunA17_Chr7g0216891 52.459 61 25 3 153 210 219 278 4.73e-12 67.8
Msa0726340 MtrunA17_Chr5g0432071 64.407 59 21 0 153 211 104 162 9.11e-21 90.1
Msa0726340 MtrunA17_Chr5g0432071 53.226 62 28 1 321 382 104 164 3.07e-15 74.3
Msa0726340 MtrunA17_Chr4g0060271 51.351 74 35 1 308 380 242 315 1.15e-20 94.7
Msa0726340 MtrunA17_Chr4g0060271 50.746 67 30 3 148 211 249 315 1.08e-13 73.2
Msa0726340 MtrunA17_Chr3g0136961 36.735 147 61 6 255 377 57 195 1.45e-20 91.7
Msa0726340 MtrunA17_Chr3g0136961 45.333 75 39 2 136 208 121 195 6.22e-14 72.0
Msa0726340 MtrunA17_Chr4g0025051 43.519 108 53 3 279 381 292 396 1.61e-20 94.0
Msa0726340 MtrunA17_Chr7g0238921 62.712 59 22 0 319 377 122 180 2.56e-20 91.3
Msa0726340 MtrunA17_Chr7g0238921 45.455 99 48 3 115 208 83 180 8.47e-15 75.1
Msa0726340 MtrunA17_Chr5g0401821 52.055 73 34 1 318 389 196 268 6.38e-20 89.4
Msa0726340 MtrunA17_Chr5g0401821 46.575 73 37 2 140 210 186 258 3.42e-13 69.7
Msa0726340 MtrunA17_Chr2g0302391 45.161 93 47 2 308 399 198 287 1.70e-19 90.1
Msa0726340 MtrunA17_Chr2g0302391 51.667 60 27 2 154 211 212 271 6.54e-13 70.1
Msa0726340 MtrunA17_Chr2g0333851 54.688 64 28 1 319 381 167 230 1.97e-19 88.6
Msa0726340 MtrunA17_Chr2g0333851 51.667 60 27 2 154 211 170 229 1.61e-12 68.2
Msa0726340 MtrunA17_Chr4g0053281 57.576 66 27 1 318 382 263 328 2.40e-19 88.6
Msa0726340 MtrunA17_Chr4g0053281 54.688 64 26 3 149 210 263 325 3.12e-14 73.6
Msa0726340 MtrunA17_Chr4g0071521 46.809 94 38 3 285 377 220 302 2.68e-19 88.2
Msa0726340 MtrunA17_Chr4g0071521 47.761 67 32 3 144 208 237 302 7.77e-12 66.2
Msa0726340 MtrunA17_Chr4g0024391 32.667 150 81 4 240 382 155 291 8.46e-19 88.6
Msa0726340 MtrunA17_Chr8g0379461 53.030 66 30 1 322 386 77 142 1.39e-18 84.7
Msa0726340 MtrunA17_Chr8g0379461 49.206 63 30 2 151 211 74 136 3.19e-13 69.3
Msa0726340 MtrunA17_Chr7g0270051 51.429 70 33 1 322 390 54 123 1.87e-18 84.7
Msa0726340 MtrunA17_Chr7g0270051 47.826 69 32 3 154 220 54 120 1.96e-11 64.3
Msa0726340 MtrunA17_Chr2g0284321 36.800 125 66 5 151 270 33 149 4.07e-18 82.8
Msa0726340 MtrunA17_Chr2g0284321 43.478 92 50 2 322 412 36 126 1.37e-17 81.3
Msa0726340 MtrunA17_Chr1g0150281 47.945 73 35 2 308 377 125 197 7.01e-18 83.6
Msa0726340 MtrunA17_Chr1g0150281 52.632 57 25 2 154 208 141 197 1.79e-13 70.5
Msa0726340 MtrunA17_Chr1g0184691 53.521 71 31 2 318 386 290 360 1.35e-17 84.0
Msa0726340 MtrunA17_Chr1g0184691 54.839 62 25 3 149 208 290 350 1.73e-12 68.6
Msa0726340 MtrunA17_Chr7g0248691 45.000 100 52 3 285 383 120 217 1.52e-17 83.2
Msa0726340 MtrunA17_Chr2g0293481 47.561 82 39 2 322 402 268 346 3.41e-17 83.6
Msa0726340 MtrunA17_Chr2g0293481 48.333 60 29 2 154 211 268 327 7.90e-11 63.9
Msa0726340 MtrunA17_Chr4g0001361 52.381 63 29 1 319 380 160 222 3.99e-17 82.0
Msa0726340 MtrunA17_Chr4g0001361 53.333 60 26 2 154 211 163 222 8.79e-14 72.0
Msa0726340 MtrunA17_Chr2g0319961 50.769 65 31 1 322 385 81 145 7.00e-17 80.1
Msa0726340 MtrunA17_Chr2g0319961 48.485 66 32 2 151 214 78 143 1.40e-13 70.5
Msa0726340 MtrunA17_Chr8g0348311 33.582 134 83 4 276 408 112 240 8.42e-17 81.3
Msa0726340 MtrunA17_Chr1g0188971 48.101 79 40 1 264 341 4 82 9.01e-17 75.1
Msa0726340 MtrunA17_Chr8g0387501 50.769 65 31 1 320 383 128 192 1.20e-16 79.7
Msa0726340 MtrunA17_Chr8g0387501 45.833 72 35 3 148 217 124 193 2.28e-12 67.0
Msa0726340 MtrunA17_Chr2g0289181 48.052 77 39 1 310 385 3 79 2.12e-16 78.2
Msa0726340 MtrunA17_Chr2g0289181 52.174 69 31 2 149 215 10 78 1.88e-14 72.8
Msa0726340 MtrunA17_Chr6g0468181 61.818 55 21 0 163 217 12 66 2.78e-16 74.7
Msa0726340 MtrunA17_Chr1g0202461 47.297 74 37 2 308 380 249 321 3.12e-16 80.1
Msa0726340 MtrunA17_Chr1g0202461 42.647 68 37 2 146 211 254 321 3.04e-11 64.7
Msa0726340 MtrunA17_Chr7g0228941 50.820 61 29 1 318 377 49 109 6.23e-16 73.9
Msa0726340 MtrunA17_Chr7g0228941 48.529 68 32 3 144 209 44 110 1.60e-13 67.0
Msa0726340 MtrunA17_Chr1g0150271 44.286 70 38 1 312 380 92 161 1.61e-15 76.3
Msa0726340 MtrunA17_Chr1g0150271 34.483 116 69 3 154 262 102 217 6.71e-14 71.2
Msa0726340 MtrunA17_Chr3g0139021 43.243 74 41 1 306 378 299 372 1.48e-14 75.1
Msa0726340 MtrunA17_Chr3g0139021 47.761 67 32 3 144 208 306 371 2.20e-11 65.5
Msa0726340 MtrunA17_Chr3g0126391 40.659 91 48 3 320 407 132 219 7.45e-13 69.3
Msa0726340 MtrunA17_Chr3g0126391 46.479 71 33 3 140 206 121 190 1.96e-12 68.2
Msa0726340 MtrunA17_Chr5g0419241 45.098 51 28 0 298 348 54 104 8.70e-13 64.7
Msa0726340 MtrunA17_Chr8g0387981 51.724 58 25 1 321 375 132 189 3.87e-12 67.4
Msa0726340 MtrunA17_Chr8g0387981 31.655 139 64 4 99 206 51 189 1.42e-11 65.9
Msa0726340 MtrunA17_Chr7g0275531 47.458 59 28 1 320 375 117 175 1.44e-11 65.5
Msa0726340 MtrunA17_Chr7g0275531 45.714 70 32 3 153 216 118 187 5.79e-11 63.5
Msa0726340 MtrunA17_Chr2g0315361 48.333 60 28 1 319 375 146 205 3.29e-11 63.9
Msa0726340 MtrunA17_Chr8g0347251 43.836 73 32 3 152 215 135 207 5.42e-11 63.9
Msa0726340 MtrunA17_Chr8g0347251 36.842 95 55 3 284 375 101 193 5.62e-11 63.9
Msa0726340 MtrunA17_Chr2g0315381 48.333 60 28 1 319 375 142 201 8.53e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726340 AT1G13960.1 50.190 526 149 20 8 434 3 514 2.73e-134 396
Msa0726340 AT2G03340.1 53.922 408 117 10 71 434 133 513 3.04e-129 383
Msa0726340 AT2G03340.1 65.957 47 12 2 24 66 20 66 7.26e-11 64.3
Msa0726340 AT1G13960.2 57.867 375 108 13 96 434 1 361 1.49e-120 355
Msa0726340 AT3G01080.2 43.841 479 167 18 22 434 18 460 2.13e-92 287
Msa0726340 AT3G01080.1 44.519 447 172 15 22 434 18 422 4.31e-90 280
Msa0726340 AT5G56270.1 49.000 300 107 4 130 383 250 549 1.27e-80 263
Msa0726340 AT2G38470.1 54.135 266 92 7 150 396 181 435 5.45e-80 256
Msa0726340 AT4G26640.5 53.252 246 95 4 152 386 34 270 7.74e-78 246
Msa0726340 AT4G26640.5 48.718 78 39 1 135 211 187 264 2.35e-15 77.8
Msa0726340 AT4G26640.6 53.252 246 95 4 152 386 34 270 7.74e-78 246
Msa0726340 AT4G26640.6 48.718 78 39 1 135 211 187 264 2.35e-15 77.8
Msa0726340 AT4G26640.4 53.252 246 95 4 152 386 34 270 7.74e-78 246
Msa0726340 AT4G26640.4 48.718 78 39 1 135 211 187 264 2.35e-15 77.8
Msa0726340 AT4G26640.3 53.252 246 95 4 152 386 34 270 7.74e-78 246
Msa0726340 AT4G26640.3 48.718 78 39 1 135 211 187 264 2.35e-15 77.8
Msa0726340 AT4G26640.1 53.252 246 95 4 152 386 138 374 4.01e-77 248
Msa0726340 AT4G26640.1 48.718 78 39 1 135 211 291 368 3.36e-15 77.8
Msa0726340 AT4G26640.7 53.252 246 95 4 152 386 170 406 6.69e-77 248
Msa0726340 AT4G26640.7 51.250 80 34 3 135 211 323 400 3.45e-15 77.8
Msa0726340 AT4G26640.2 53.036 247 96 4 152 387 210 447 1.27e-76 249
Msa0726340 AT4G26640.2 51.250 80 34 3 135 211 363 440 3.36e-15 78.2
Msa0726340 AT4G26440.1 48.571 280 112 6 145 395 170 446 4.72e-76 248
Msa0726340 AT5G07100.2 48.954 239 69 3 146 383 17 203 3.65e-71 224
Msa0726340 AT5G07100.2 56.250 64 27 1 153 215 141 204 1.77e-16 78.6
Msa0726340 AT5G07100.2 48.571 70 36 0 321 390 24 93 7.42e-15 73.9
Msa0726340 AT5G07100.4 48.954 239 69 3 146 383 17 203 3.65e-71 224
Msa0726340 AT5G07100.4 56.250 64 27 1 153 215 141 204 1.77e-16 78.6
Msa0726340 AT5G07100.4 48.571 70 36 0 321 390 24 93 7.42e-15 73.9
Msa0726340 AT5G07100.5 48.954 239 69 3 146 383 17 203 3.65e-71 224
Msa0726340 AT5G07100.5 56.250 64 27 1 153 215 141 204 1.77e-16 78.6
Msa0726340 AT5G07100.5 48.571 70 36 0 321 390 24 93 7.42e-15 73.9
Msa0726340 AT5G07100.3 48.954 239 69 3 146 383 17 203 3.65e-71 224
Msa0726340 AT5G07100.3 56.250 64 27 1 153 215 141 204 1.77e-16 78.6
Msa0726340 AT5G07100.3 48.571 70 36 0 321 390 24 93 7.42e-15 73.9
Msa0726340 AT5G07100.1 49.791 239 67 4 146 383 110 296 1.44e-70 226
Msa0726340 AT5G07100.1 56.250 64 27 1 153 215 234 297 3.85e-16 79.3
Msa0726340 AT5G07100.1 40.000 95 46 1 307 390 92 186 2.36e-15 77.0
Msa0726340 AT2G37260.3 44.406 286 106 8 149 400 81 347 2.67e-64 211
Msa0726340 AT2G37260.2 44.406 286 106 8 149 400 79 345 3.09e-64 210
Msa0726340 AT2G37260.1 44.406 286 106 8 149 400 161 427 1.07e-63 211
Msa0726340 AT2G30250.1 45.600 250 122 4 137 382 150 389 1.58e-61 204
Msa0726340 AT2G04880.2 43.969 257 112 8 149 387 107 349 2.04e-60 204
Msa0726340 AT2G04880.2 45.455 99 49 2 152 247 282 378 4.67e-20 92.4
Msa0726340 AT2G04880.1 41.544 272 121 7 149 387 107 373 2.32e-59 201
Msa0726340 AT2G04880.1 45.455 99 49 2 152 247 306 402 5.29e-20 92.4
Msa0726340 AT4G12020.3 53.731 201 88 4 146 341 461 661 4.51e-55 197
Msa0726340 AT4G12020.3 50.820 61 29 1 320 380 467 526 1.67e-12 70.5
Msa0726340 AT4G12020.6 53.731 201 88 4 146 341 461 661 4.53e-55 197
Msa0726340 AT4G12020.6 50.820 61 29 1 320 380 467 526 1.60e-12 70.5
Msa0726340 AT4G12020.8 53.731 201 88 4 146 341 461 661 4.53e-55 197
Msa0726340 AT4G12020.8 50.820 61 29 1 320 380 467 526 1.60e-12 70.5
Msa0726340 AT4G12020.1 53.731 201 88 4 146 341 461 661 4.73e-55 197
Msa0726340 AT4G12020.1 50.820 61 29 1 320 380 467 526 1.67e-12 70.5
Msa0726340 AT4G12020.9 53.731 201 88 4 146 341 461 661 4.73e-55 197
Msa0726340 AT4G12020.9 50.820 61 29 1 320 380 467 526 1.67e-12 70.5
Msa0726340 AT4G12020.7 53.731 201 88 4 146 341 461 661 5.09e-55 197
Msa0726340 AT4G12020.7 50.820 61 29 1 320 380 467 526 1.66e-12 70.5
Msa0726340 AT4G12020.10 53.731 201 88 4 146 341 461 661 5.25e-55 197
Msa0726340 AT4G12020.10 50.820 61 29 1 320 380 467 526 1.64e-12 70.5
Msa0726340 AT4G12020.2 53.731 201 88 4 146 341 461 661 5.31e-55 197
Msa0726340 AT4G12020.2 50.820 61 29 1 320 380 467 526 1.72e-12 70.5
Msa0726340 AT4G12020.11 53.731 201 88 4 146 341 461 661 5.66e-55 197
Msa0726340 AT4G12020.11 50.820 61 29 1 320 380 467 526 2.29e-12 69.7
Msa0726340 AT4G12020.4 53.731 201 88 4 146 341 461 661 5.84e-55 197
Msa0726340 AT4G12020.4 50.820 61 29 1 320 380 467 526 1.79e-12 70.1
Msa0726340 AT4G12020.5 53.731 201 88 4 146 341 394 594 7.34e-55 197
Msa0726340 AT4G12020.5 50.820 61 29 1 320 380 400 459 2.01e-12 70.1
Msa0726340 AT4G30935.1 42.437 238 122 6 151 383 166 393 1.24e-49 175
Msa0726340 AT4G30935.1 56.250 64 27 1 154 216 332 395 2.14e-17 84.7
Msa0726340 AT3G01080.3 38.869 283 102 13 22 239 18 294 1.83e-36 136
Msa0726340 AT3G01080.3 58.333 60 24 1 321 380 205 263 2.40e-15 77.0
Msa0726340 AT4G18170.1 68.000 75 24 0 306 380 157 231 1.51e-30 120
Msa0726340 AT4G18170.1 58.333 60 24 1 153 211 172 231 4.98e-16 79.0
Msa0726340 AT1G29860.1 65.789 76 26 0 306 381 121 196 2.26e-30 119
Msa0726340 AT1G29860.1 58.333 60 24 1 153 211 136 195 5.43e-16 78.6
Msa0726340 AT5G46350.1 62.338 77 29 0 307 383 169 245 7.26e-29 115
Msa0726340 AT5G46350.1 54.545 66 28 2 153 217 183 247 3.51e-15 76.6
Msa0726340 AT2G44745.1 59.036 83 33 1 304 386 128 209 2.32e-28 111
Msa0726340 AT2G44745.1 57.971 69 25 3 153 219 145 211 1.35e-16 79.0
Msa0726340 AT4G39410.1 64.865 74 26 0 304 377 206 279 2.65e-28 114
Msa0726340 AT4G39410.1 49.333 75 35 2 136 208 206 279 2.15e-13 71.2
Msa0726340 AT5G13080.1 56.098 82 36 0 308 389 54 135 2.71e-28 109
Msa0726340 AT5G13080.1 54.386 57 25 1 153 208 67 123 3.02e-15 73.2
Msa0726340 AT2G47260.1 62.667 75 28 0 306 380 159 233 7.29e-28 113
Msa0726340 AT2G47260.1 58.333 60 24 1 153 211 174 233 2.49e-15 77.4
Msa0726340 AT5G49520.1 64.000 75 27 0 306 380 206 280 9.69e-28 114
Msa0726340 AT5G49520.1 58.333 60 24 1 153 211 221 280 3.59e-15 77.4
Msa0726340 AT3G01970.1 58.537 82 34 0 308 389 52 133 1.97e-27 107
Msa0726340 AT3G01970.1 52.381 63 29 1 153 214 65 127 2.53e-15 73.6
Msa0726340 AT1G69310.4 47.826 115 53 1 263 377 96 203 3.31e-27 110
Msa0726340 AT1G69310.4 60.345 58 22 1 153 209 147 204 8.06e-16 78.2
Msa0726340 AT1G69310.2 47.826 115 53 1 263 377 96 203 3.31e-27 110
Msa0726340 AT1G69310.2 60.345 58 22 1 153 209 147 204 8.06e-16 78.2
Msa0726340 AT1G69310.1 47.826 115 53 1 263 377 96 203 3.31e-27 110
Msa0726340 AT1G69310.1 60.345 58 22 1 153 209 147 204 8.06e-16 78.2
Msa0726340 AT1G64000.1 38.650 163 91 3 220 377 12 170 2.28e-26 105
Msa0726340 AT1G64000.1 49.333 75 35 2 136 208 97 170 1.47e-15 75.5
Msa0726340 AT5G41570.1 63.380 71 26 0 307 377 84 154 2.41e-26 105
Msa0726340 AT5G41570.1 54.839 62 25 2 149 208 94 154 5.27e-14 70.5
Msa0726340 AT5G26170.1 60.000 70 28 0 308 377 100 169 3.44e-26 104
Msa0726340 AT5G26170.1 52.459 61 28 1 153 212 113 173 3.04e-14 70.9
Msa0726340 AT4G04450.2 46.296 108 57 1 300 406 177 284 2.40e-25 107
Msa0726340 AT4G04450.2 51.667 60 27 2 154 211 199 258 8.25e-13 70.5
Msa0726340 AT3G62340.1 62.162 74 28 0 307 380 104 177 3.65e-25 104
Msa0726340 AT3G62340.1 58.333 60 24 1 153 211 118 177 7.04e-15 75.1
Msa0726340 AT1G55600.1 57.303 89 38 0 294 382 280 368 4.09e-25 107
Msa0726340 AT1G55600.1 57.377 61 23 2 153 211 307 366 1.55e-13 72.8
Msa0726340 AT2G46130.1 60.563 71 28 0 307 377 16 86 5.09e-25 99.4
Msa0726340 AT2G46130.1 58.621 58 23 1 152 208 29 86 1.39e-15 72.8
Msa0726340 AT4G04450.1 46.296 108 57 1 300 406 271 378 9.22e-25 107
Msa0726340 AT2G21900.1 50.000 76 35 1 310 382 95 170 6.22e-23 96.3
Msa0726340 AT2G21900.1 41.053 95 55 1 144 237 100 194 1.04e-14 73.2
Msa0726340 AT5G64810.1 53.521 71 33 0 308 378 97 167 6.47e-23 96.3
Msa0726340 AT5G64810.1 50.000 60 25 2 153 209 110 167 1.45e-11 63.9
Msa0726340 AT4G22070.4 47.727 88 45 1 294 380 270 357 1.20e-22 100
Msa0726340 AT4G22070.4 51.667 60 27 2 154 211 298 357 1.38e-12 70.1
Msa0726340 AT4G22070.3 47.727 88 45 1 294 380 270 357 1.20e-22 100
Msa0726340 AT4G22070.3 51.667 60 27 2 154 211 298 357 1.38e-12 70.1
Msa0726340 AT4G22070.2 47.727 88 45 1 294 380 270 357 1.20e-22 100
Msa0726340 AT4G22070.2 51.667 60 27 2 154 211 298 357 1.38e-12 70.1
Msa0726340 AT4G22070.1 47.727 88 45 1 294 380 270 357 1.20e-22 100
Msa0726340 AT4G22070.1 51.667 60 27 2 154 211 298 357 1.38e-12 70.1
Msa0726340 AT1G62300.1 50.602 83 40 1 299 380 290 372 1.61e-22 100
Msa0726340 AT1G62300.1 39.394 99 54 4 119 211 274 372 4.43e-13 71.6
Msa0726340 AT1G69310.3 45.217 115 52 2 263 377 96 199 2.32e-22 96.7
Msa0726340 AT1G69310.3 55.172 58 21 2 153 209 147 200 2.99e-11 64.3
Msa0726340 AT5G15130.2 48.780 82 41 1 304 384 168 249 9.84e-22 97.8
Msa0726340 AT5G15130.2 51.613 62 26 3 153 211 185 245 1.16e-12 70.1
Msa0726340 AT5G15130.1 48.780 82 41 1 304 384 210 291 1.10e-21 97.8
Msa0726340 AT5G15130.1 51.613 62 26 3 153 211 227 287 1.31e-12 70.1
Msa0726340 AT1G68150.1 52.564 78 36 1 308 384 222 299 2.16e-21 95.5
Msa0726340 AT1G68150.1 36.752 117 65 4 98 211 185 295 3.44e-14 74.3
Msa0726340 AT2G46130.2 56.338 71 27 1 307 377 16 82 2.63e-20 86.3
Msa0726340 AT2G46130.2 53.448 58 22 2 152 208 29 82 5.10e-11 59.7
Msa0726340 AT1G18860.1 50.000 78 38 1 304 380 222 299 6.21e-20 92.4
Msa0726340 AT4G31550.1 52.381 84 36 2 303 385 231 311 8.19e-20 90.5
Msa0726340 AT4G31550.1 54.839 62 25 3 149 208 243 303 2.20e-12 68.2
Msa0726340 AT4G31550.2 52.381 84 36 2 303 385 230 310 8.32e-20 90.1
Msa0726340 AT4G31550.2 54.839 62 25 3 149 208 242 302 2.28e-12 68.2
Msa0726340 AT4G23550.1 41.237 97 56 1 288 383 107 203 9.09e-20 90.1
Msa0726340 AT4G23550.1 34.667 150 83 5 76 211 52 200 1.01e-11 66.2
Msa0726340 AT2G25000.2 41.111 90 52 1 294 382 76 165 1.53e-19 87.4
Msa0726340 AT2G25000.2 33.333 120 66 5 154 262 104 220 3.13e-11 63.5
Msa0726340 AT2G25000.4 41.111 90 52 1 294 382 76 165 1.53e-19 87.4
Msa0726340 AT2G25000.4 33.333 120 66 5 154 262 104 220 3.13e-11 63.5
Msa0726340 AT2G25000.3 41.111 90 52 1 294 382 98 187 2.46e-19 87.4
Msa0726340 AT2G25000.3 33.333 120 66 5 154 262 126 242 5.67e-11 63.2
Msa0726340 AT4G01720.1 51.351 74 35 1 308 380 226 299 3.68e-19 90.1
Msa0726340 AT4G01720.1 41.463 82 46 2 132 211 218 299 3.57e-12 68.6
Msa0726340 AT2G25000.1 41.111 90 52 1 294 382 119 208 3.78e-19 87.4
Msa0726340 AT2G25000.1 33.333 120 66 5 154 262 147 263 7.00e-11 63.2
Msa0726340 AT5G43290.1 44.792 96 41 1 294 377 75 170 9.08e-19 86.3
Msa0726340 AT5G43290.1 53.846 78 25 3 152 218 113 190 2.49e-15 76.3
Msa0726340 AT2G23320.1 58.730 63 25 1 318 379 237 299 1.07e-18 87.0
Msa0726340 AT2G23320.1 53.125 64 27 3 149 210 237 299 8.47e-13 69.3
Msa0726340 AT2G30590.1 60.656 61 23 1 318 377 310 370 1.17e-18 87.8
Msa0726340 AT2G30590.1 53.731 67 27 4 149 212 310 375 3.45e-13 71.2
Msa0726340 AT1G80840.1 51.562 64 30 1 319 381 144 207 2.11e-18 85.9
Msa0726340 AT1G80840.1 50.820 61 28 2 154 212 147 207 1.57e-13 71.6
Msa0726340 AT4G31800.2 50.704 71 33 2 314 382 103 173 2.63e-18 84.3
Msa0726340 AT4G31800.2 49.180 61 29 2 154 212 112 172 1.00e-12 68.2
Msa0726340 AT4G31800.1 50.704 71 33 2 314 382 168 238 4.51e-18 85.1
Msa0726340 AT4G31800.1 49.180 61 29 2 154 212 177 237 1.52e-12 68.6
Msa0726340 AT4G24240.1 56.250 64 27 1 317 379 277 340 6.72e-18 85.1
Msa0726340 AT4G24240.1 50.725 69 31 3 144 210 273 340 9.30e-14 72.8
Msa0726340 AT4G01250.1 57.143 63 26 1 319 380 126 188 1.12e-17 83.6
Msa0726340 AT4G01250.1 33.333 126 75 4 154 277 129 247 1.36e-11 65.5
Msa0726340 AT5G28650.1 51.389 72 34 1 318 388 259 330 1.44e-17 84.0
Msa0726340 AT5G28650.1 53.226 62 26 3 149 208 259 319 1.27e-11 65.9
Msa0726340 AT2G24570.1 60.656 61 23 1 318 377 240 300 1.47e-17 83.6
Msa0726340 AT2G24570.1 54.839 62 25 3 149 208 240 300 1.45e-12 68.9
Msa0726340 AT3G04670.1 51.389 72 34 1 318 388 259 330 2.37e-17 83.2
Msa0726340 AT3G04670.1 51.613 62 27 3 149 208 259 319 1.09e-11 66.2
Msa0726340 AT5G52830.1 46.667 90 45 3 308 396 153 240 4.22e-17 82.8
Msa0726340 AT5G52830.1 48.485 66 30 3 154 217 166 229 3.63e-11 64.7
Msa0726340 AT1G30650.1 40.594 101 41 2 322 403 218 318 4.24e-17 83.6
Msa0726340 AT1G30650.1 50.000 60 28 2 154 211 218 277 3.29e-11 65.5
Msa0726340 AT3G58710.2 34.746 118 67 2 281 388 21 138 6.53e-17 80.9
Msa0726340 AT3G58710.2 44.286 70 37 2 151 218 68 137 5.52e-12 66.2
Msa0726340 AT1G29280.1 55.000 60 26 1 322 380 75 134 7.10e-17 80.5
Msa0726340 AT1G29280.1 49.206 63 30 2 151 211 72 134 1.44e-12 67.8
Msa0726340 AT3G58710.1 48.529 68 34 1 322 388 72 139 8.25e-17 80.5
Msa0726340 AT3G58710.1 44.286 70 37 2 151 218 69 138 5.38e-12 66.6
Msa0726340 AT2G34830.1 52.381 63 29 1 322 383 216 278 8.44e-17 82.4
Msa0726340 AT2G34830.1 48.333 60 29 2 154 211 216 275 7.07e-11 64.3
Msa0726340 AT2G34830.2 52.381 63 29 1 322 383 225 287 8.90e-17 82.4
Msa0726340 AT2G34830.2 48.333 60 29 2 154 211 225 284 7.93e-11 64.3
Msa0726340 AT5G45050.2 52.381 63 29 1 322 383 1153 1215 9.83e-16 80.5
Msa0726340 AT5G45050.4 52.381 63 29 1 322 383 1042 1104 9.86e-16 80.5
Msa0726340 AT5G45050.1 52.381 63 29 1 322 383 1181 1243 1.09e-15 80.1
Msa0726340 AT1G69810.2 40.426 94 52 3 304 395 128 219 1.85e-15 77.4
Msa0726340 AT1G69810.2 45.455 66 33 2 149 211 141 206 1.89e-11 65.5
Msa0726340 AT1G69810.1 42.222 90 48 3 308 395 190 277 2.77e-15 77.8
Msa0726340 AT1G69810.1 45.455 66 33 2 149 211 199 264 2.17e-11 65.9
Msa0726340 AT2G40740.1 51.562 64 27 2 147 206 167 230 1.80e-14 73.9
Msa0726340 AT2G40740.3 51.562 64 27 2 147 206 176 239 2.51e-14 73.9
Msa0726340 AT1G66560.1 51.724 58 25 1 321 375 103 160 3.84e-13 69.3
Msa0726340 AT3G56400.1 40.244 82 42 2 313 387 112 193 4.24e-13 70.1
Msa0726340 AT2G46400.1 36.607 112 59 3 267 375 59 161 1.53e-12 68.6
Msa0726340 AT4G11070.2 37.500 112 55 5 127 229 89 194 2.00e-12 67.8
Msa0726340 AT4G11070.1 37.500 112 55 5 127 229 121 226 2.15e-12 68.2
Msa0726340 AT5G24110.1 43.243 74 37 3 137 206 98 170 8.13e-12 66.2
Msa0726340 AT4G23810.1 43.662 71 35 3 140 206 146 215 9.50e-12 66.2
Msa0726340 AT5G45260.1 32.903 155 83 6 233 383 1136 1273 1.20e-11 67.4
Msa0726340 AT5G45260.1 43.137 102 44 7 122 216 1179 1273 2.23e-11 66.6

Find 132 sgRNAs with CRISPR-Local

Find 299 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGTCCTGATGATAGAGTTAA+AGG 0.264927 5_1:-27085360 Msa0726340:three_prime_UTR
TACAAAAGCTTACCTCCTTT+TGG 0.266350 5_1:+27086489 None:intergenic
GATTACCAGAGTCTTAATTT+AGG 0.267358 5_1:+27085467 None:intergenic
TATGTTGTTATGACTGCTTT+AGG 0.286428 5_1:+27085686 None:intergenic
CCTGTTGCCTGACTAGATTC+AGG 0.298032 5_1:+27086595 None:intergenic
GGTTATAGATGGCGAAAATA+TGG 0.304499 5_1:-27086142 Msa0726340:CDS
TTTGATCGCTTATTAGGATT+CGG 0.306605 5_1:+27086712 None:intergenic
GGCTACAATTGGAGGAAATA+TGG 0.308838 5_1:-27086880 Msa0726340:CDS
TATGGACAGAAAGTTGTTAA+AGG 0.320018 5_1:-27086124 Msa0726340:CDS
TAACTGTCCTGTCAAGAAAA+AGG 0.329083 5_1:-27086800 Msa0726340:CDS
ATAACCGCAATTATTTATAA+AGG 0.337197 5_1:-27086754 Msa0726340:CDS
AAGGTTGAGCGTTCGCTTGC+TGG 0.338256 5_1:-27086781 Msa0726340:CDS
CCACCGGTGGTTACCGTTGC+CGG 0.343626 5_1:+27089449 None:intergenic
AACAACCTGTTGCTCATCTA+AGG 0.346238 5_1:-27085517 Msa0726340:CDS
TTGATCGCTTATTAGGATTC+GGG 0.369634 5_1:+27086713 None:intergenic
CTTCAAATGAAAATTCAAAT+AGG 0.383970 5_1:-27086678 Msa0726340:CDS
CTCTCTAACTTATTTGCTGA+TGG 0.386992 5_1:-27089521 Msa0726340:CDS
ACCGGTGGGTTTGATTCATC+TGG 0.396023 5_1:-27089434 Msa0726340:CDS
TAACTGTGAAGCATTATTGT+TGG 0.399399 5_1:+27085607 None:intergenic
CTTCTTCCTTCCACGGTGGC+CGG 0.401152 5_1:+27089660 None:intergenic
CGCCGGTGCCACGGTGTCTC+CGG 0.408122 5_1:-27089468 Msa0726340:CDS
GCGGCAATTGGCGGTGGCGA+AGG 0.409612 5_1:-27089632 Msa0726340:CDS
TGTATGTTCAACGGTGGAAA+TGG 0.410098 5_1:-27089684 Msa0726340:exon
TTCAGCCTTAGATGAGCAAC+AGG 0.411439 5_1:+27085512 None:intergenic
CACAACATAACATATAGTTT+AGG 0.414108 5_1:+27085197 None:intergenic
ATTTCTGAGAAGCCTAGTTT+TGG 0.416394 5_1:-27085569 Msa0726340:CDS
GAGGAAATATGGACAGAAAC+AGG 0.418222 5_1:-27086869 Msa0726340:CDS
CATATGATGTAGGTATCCTT+TGG 0.418514 5_1:-27087081 Msa0726340:intron
CGTACGTGGCGGAAGAGTTA+AGG 0.426728 5_1:+27089589 None:intergenic
GCAACAGGTGAACATCTATC+TGG 0.429027 5_1:-27086580 Msa0726340:CDS
AAGTTAGAGAGAAGAGTCAT+AGG 0.429317 5_1:+27089533 None:intergenic
GTTATGCATATTAGTACTGT+TGG 0.430264 5_1:+27087008 None:intergenic
TAAAGGATAACAAGTTTAAA+CGG 0.433002 5_1:-27085343 Msa0726340:three_prime_UTR
TTGGTAGCATTGGTATTGGC+GGG 0.437748 5_1:-27085550 Msa0726340:CDS
AAAACTAGGCTTCTCAGAAA+TGG 0.445800 5_1:+27085571 None:intergenic
CGGCAATTGGCGGTGGCGAA+GGG 0.447860 5_1:-27089631 Msa0726340:CDS
TTAAAGGAAATCCTTATCCT+AGG 0.456816 5_1:-27086108 Msa0726340:intron
TATCCTTTAACTCTATCATC+AGG 0.459014 5_1:+27085357 None:intergenic
AGAAGGCTGCAACCTTTGTT+CGG 0.460546 5_1:+27086933 None:intergenic
GGCAATTGGCGGTGGCGAAG+GGG 0.472971 5_1:-27089630 Msa0726340:CDS
GCTTCTTCTTCTTCCTTCCA+CGG 0.479135 5_1:+27089653 None:intergenic
CCACCGTTGAACATACAACT+TGG 0.481070 5_1:+27089690 None:intergenic
GAAGAAGAAGAAGCGGCAAT+TGG 0.481256 5_1:-27089644 Msa0726340:CDS
GAAGTTGATCTCTTAGATGA+TGG 0.483367 5_1:-27086163 Msa0726340:CDS
TCAGCTTCTCGCCGGTGCCA+CGG 0.484348 5_1:-27089477 Msa0726340:CDS
CCGATGATGGCTACAATTGG+AGG 0.485258 5_1:-27086888 Msa0726340:CDS
CTGTTGCCTGACTAGATTCA+GGG 0.486306 5_1:+27086596 None:intergenic
TTCAAACTCAATGTCTAAGA+TGG 0.487664 5_1:-27086620 Msa0726340:CDS
ACAGTACTATGTGAAGTTGT+TGG 0.490613 5_1:+27086220 None:intergenic
CTGCCGATGATGGCTACAAT+TGG 0.491271 5_1:-27086891 Msa0726340:CDS
GATGGACCCTGAATCTAGTC+AGG 0.493707 5_1:-27086602 Msa0726340:CDS
GATGCATATCACCTAGGATA+AGG 0.495253 5_1:+27086097 None:intergenic
TCTTAGATGATGGTTATAGA+TGG 0.497586 5_1:-27086153 Msa0726340:CDS
GTCGATAAGCCTGCCGATGA+TGG 0.498396 5_1:-27086901 Msa0726340:CDS
GAATTGAGCCCGACTCCAAA+AGG 0.499145 5_1:-27086504 Msa0726340:CDS
AATGGACCGGCCACCGTGGA+AGG 0.501475 5_1:-27089666 Msa0726340:CDS
CCTGAATCTAGTCAGGCAAC+AGG 0.502478 5_1:-27086595 Msa0726340:CDS
TCCTTCTCTCAGCTTCTCGC+CGG 0.503568 5_1:-27089485 Msa0726340:CDS
GCAGTCATAACAACATATGA+AGG 0.514254 5_1:-27085680 Msa0726340:CDS
TGGCTATTAGTCTTAGCTGC+TGG 0.515585 5_1:+27085638 None:intergenic
GAAGAAGAAGCGGCAATTGG+CGG 0.518253 5_1:-27089641 Msa0726340:CDS
GAGAGAAGAGTCATAGGACC+AGG 0.520057 5_1:+27089539 None:intergenic
ATACCAATGCTACCAAAACT+AGG 0.520202 5_1:+27085557 None:intergenic
TGCCGGAGACACCGTGGCAC+CGG 0.525745 5_1:+27089466 None:intergenic
CCTCCAATTGTAGCCATCAT+CGG 0.527967 5_1:+27086888 None:intergenic
TTTGGTAGCATTGGTATTGG+CGG 0.529217 5_1:-27085551 Msa0726340:CDS
GAAGAAGCGGCAATTGGCGG+TGG 0.533119 5_1:-27089638 Msa0726340:CDS
TTCGGAGAGAGGAGCATGAT+CGG 0.537950 5_1:+27086951 None:intergenic
GCAATTGGCGGTGGCGAAGG+GGG 0.539528 5_1:-27089629 Msa0726340:CDS
GTGCACTTGTAATAACTTCG+AGG 0.540882 5_1:+27086829 None:intergenic
CTTAACTCTTCCGCCACGTA+CGG 0.541928 5_1:-27089588 Msa0726340:CDS
TGCAACCTTTGTTCGGAGAG+AGG 0.548420 5_1:+27086940 None:intergenic
CTCTCCTTTATAAATAATTG+CGG 0.550517 5_1:+27086750 None:intergenic
CAATTGTAGCCATCATCGGC+AGG 0.552856 5_1:+27086892 None:intergenic
AAGCTCCTAAATTAAGACTC+TGG 0.554251 5_1:-27085472 Msa0726340:three_prime_UTR
TGCCACGGTGTCTCCGGCAA+CGG 0.556171 5_1:-27089462 Msa0726340:CDS
GGTAGCATTGGTATTGGCGG+GGG 0.556601 5_1:-27085548 Msa0726340:CDS
CGTTCGAAAGCATGTAGAGA+GGG 0.556717 5_1:-27085720 Msa0726340:CDS
CCGGCAACGGTAACCACCGG+TGG 0.560156 5_1:-27089449 Msa0726340:CDS
AAAAGTTGGTGGAGATAACA+GGG 0.561299 5_1:-27085317 Msa0726340:three_prime_UTR
AATGAAAATTCAAATAGGCA+AGG 0.563913 5_1:-27086673 Msa0726340:CDS
ATCTAAGAGATCAACTTCAC+TGG 0.563948 5_1:+27086168 None:intergenic
ATGAAAATTCAAATAGGCAA+GGG 0.564284 5_1:-27086672 Msa0726340:CDS
TTATCGACATTCAACGAAGA+AGG 0.568098 5_1:+27086916 None:intergenic
GCATGTAGAGAGGGCTTCGA+CGG 0.569371 5_1:-27085711 Msa0726340:CDS
ACCGGCGAGAAGCTGAGAGA+AGG 0.570158 5_1:+27089484 None:intergenic
GTTAAGGTGGGTCGCTGTGG+TGG 0.571117 5_1:+27089605 None:intergenic
GTTCAACGGTGGAAATGGAC+CGG 0.577407 5_1:-27089679 Msa0726340:exon
CAGATGATAAATGTTCGACT+TGG 0.580457 5_1:+27086986 None:intergenic
GGAGCATGATCGGTGGATGT+TGG 0.586815 5_1:+27086961 None:intergenic
TAATGCAACAAGAAAGTACA+TGG 0.594717 5_1:+27085152 None:intergenic
TTATTTGCTGATGGTGATGA+CGG 0.597799 5_1:-27089512 Msa0726340:CDS
ACGAGTGATAGTGAGGATGT+AGG 0.598153 5_1:-27086556 Msa0726340:CDS
GTGAAAAGTGCGTCCGTACG+TGG 0.598428 5_1:+27089575 None:intergenic
ACGTGGCGGAAGAGTTAAGG+TGG 0.606182 5_1:+27089592 None:intergenic
TGTTGCTCATCTAAGGCTGA+AGG 0.609136 5_1:-27085510 Msa0726340:CDS
AGGACCAGGGCTAAAACCAC+CGG 0.613111 5_1:+27089553 None:intergenic
TGGTAGCATTGGTATTGGCG+GGG 0.613610 5_1:-27085549 Msa0726340:CDS
ATGCTCCTCTCTCCGAACAA+AGG 0.614608 5_1:-27086945 Msa0726340:CDS
CTATTACAAATGTACAACAC+CGG 0.615116 5_1:-27085750 Msa0726340:CDS
TATGGACAGAAACAGGTGAA+AGG 0.615984 5_1:-27086862 Msa0726340:CDS
TGCTTTCGAACGTTACAACC+CGG 0.617124 5_1:+27085731 None:intergenic
AGAGTTAAGGTGGGTCGCTG+TGG 0.617498 5_1:+27089602 None:intergenic
ATCTGGAACGAGTGATAGTG+AGG 0.619905 5_1:-27086563 Msa0726340:CDS
CATTATTGTTGGCAATAGTG+TGG 0.625832 5_1:+27085618 None:intergenic
ATAATTTCGATGTACACAGA+AGG 0.627379 5_1:+27085273 None:intergenic
GGAGAGAGGAGCATGATCGG+TGG 0.628568 5_1:+27086954 None:intergenic
ACCAGATGAATCAAACCCAC+CGG 0.631315 5_1:+27089433 None:intergenic
AAAGTTGGTGGAGATAACAG+GGG 0.637324 5_1:-27085316 Msa0726340:three_prime_UTR
TATTACAAATGTACAACACC+GGG 0.637594 5_1:-27085749 Msa0726340:CDS
TCTCCGGCAACGGTAACCAC+CGG 0.638389 5_1:-27089452 Msa0726340:CDS
ACAGCAGCAACCACTGACAC+AGG 0.639404 5_1:-27087052 Msa0726340:CDS
GTGCTGATTCAACTTATCAA+CGG 0.645507 5_1:-27086648 Msa0726340:CDS
AAACCAAGTTGTATGTTCAA+CGG 0.645642 5_1:-27089693 Msa0726340:five_prime_UTR
GCAACCACTGACACAGGTCT+CGG 0.647175 5_1:-27087046 Msa0726340:CDS
GTGGAAGGAAGAAGAAGAAG+CGG 0.649666 5_1:-27089651 Msa0726340:CDS
ACGTTCGAAAGCATGTAGAG+AGG 0.651751 5_1:-27085721 Msa0726340:CDS
CGGCAACGGTAACCACCGGT+GGG 0.654733 5_1:-27089448 Msa0726340:CDS
AGGTGATCGTGAAACAGAAG+TGG 0.657969 5_1:-27086536 Msa0726340:CDS
TGGAAATGGACCGGCCACCG+TGG 0.658433 5_1:-27089670 Msa0726340:exon
TTGCTGCTGTGTCATTCCAA+AGG 0.666392 5_1:+27087065 None:intergenic
CCAAGTTGTATGTTCAACGG+TGG 0.671405 5_1:-27089690 Msa0726340:five_prime_UTR
AGAGAAGAGTCATAGGACCA+GGG 0.673747 5_1:+27089540 None:intergenic
TGAGCCGAGACCTGTGTCAG+TGG 0.676749 5_1:+27087042 None:intergenic
AAAAGTGCGTCCGTACGTGG+CGG 0.684333 5_1:+27089578 None:intergenic
TTGAGCCCGACTCCAAAAGG+AGG 0.687140 5_1:-27086501 Msa0726340:intron
CGTGGCGGAAGAGTTAAGGT+GGG 0.691075 5_1:+27089593 None:intergenic
ACACAGGTCTCGGCTCACGA+AGG 0.691681 5_1:-27087036 Msa0726340:CDS
AGATGAATCAAACCCACCGG+TGG 0.700312 5_1:+27089436 None:intergenic
TCTTCTTCTTCCTTCCACGG+TGG 0.700627 5_1:+27089656 None:intergenic
TAATAACAAGACAAACACAA+AGG 0.713047 5_1:-27089848 Msa0726340:five_prime_UTR
TACCGTTGCCGGAGACACCG+TGG 0.716633 5_1:+27089460 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATTTTTTTTAGAAAATATA+TGG + chr5_1:27086237-27086256 None:intergenic 10.0%
!! AAATAAAATGAAATAATCAT+TGG + chr5_1:27087769-27087788 None:intergenic 10.0%
!!! AAAACATTAATAATTTTTTC+AGG + chr5_1:27089250-27089269 None:intergenic 10.0%
!! AAAAATTACATAGAAATGAA+GGG + chr5_1:27086156-27086175 None:intergenic 15.0%
!! AAAAAATTACATAGAAATGA+AGG + chr5_1:27086157-27086176 None:intergenic 15.0%
!! ATAGTAATATTTCCAAATTT+GGG + chr5_1:27086693-27086712 None:intergenic 15.0%
!! AATATCTGTTAAATAATGTA+AGG + chr5_1:27087507-27087526 None:intergenic 15.0%
!!! CATTTTGAAACAATTTTTTT+TGG + chr5_1:27087602-27087621 None:intergenic 15.0%
!!! TAAATAAGCCTATTTTAATA+AGG + chr5_1:27089017-27089036 None:intergenic 15.0%
!!! CTTCTTTTTCTTTTTGTTTT+TGG - chr5_1:27085312-27085331 Msa0726340:three_prime_UTR 20.0%
!! TTAACACTTATATATAACAG+TGG + chr5_1:27085719-27085738 None:intergenic 20.0%
!! ACAATGCATTATTATATGTA+GGG - chr5_1:27085820-27085839 Msa0726340:intron 20.0%
!!! ACTTCTCTACATATTTTTTT+TGG + chr5_1:27085897-27085916 None:intergenic 20.0%
!!! ACTTTTTGAAAGAGTTTAAA+TGG - chr5_1:27086043-27086062 Msa0726340:intron 20.0%
!!! TTAAAATATTCCTACACTTT+TGG - chr5_1:27086658-27086677 Msa0726340:CDS 20.0%
!! GATAGTAATATTTCCAAATT+TGG + chr5_1:27086694-27086713 None:intergenic 20.0%
!! AAAAAAGAGATTATCTAAAG+TGG + chr5_1:27086821-27086840 None:intergenic 20.0%
!! GTTTGTATATAAACAATGTA+CGG + chr5_1:27087155-27087174 None:intergenic 20.0%
!! GAAAAAAATTAAAGTTGCAT+TGG + chr5_1:27087642-27087661 None:intergenic 20.0%
!!! TGTCTTTTTCTAATAAAGTA+AGG - chr5_1:27087720-27087739 Msa0726340:intron 20.0%
!! ATAACCGCAATTATTTATAA+AGG - chr5_1:27088285-27088304 Msa0726340:intron 20.0%
!! CTTCAAATGAAAATTCAAAT+AGG - chr5_1:27088361-27088380 Msa0726340:intron 20.0%
!! TTTACAACTTTGACATATAT+CGG + chr5_1:27088585-27088604 None:intergenic 20.0%
!! TATATGTCAAAGTTGTAAAT+AGG - chr5_1:27088586-27088605 Msa0726340:intron 20.0%
!!! CAGTATTTACAACATTTTTA+TGG - chr5_1:27088702-27088721 Msa0726340:intron 20.0%
!!! TGTTTTCTTACATAATGTTT+AGG - chr5_1:27089264-27089283 Msa0726340:intron 20.0%
!!! TTCTATTCTTTTTCAGTTTT+AGG - chr5_1:27089641-27089660 Msa0726340:CDS 20.0%
!! TAAAGGATAACAAGTTTAAA+CGG - chr5_1:27089696-27089715 Msa0726340:five_prime_UTR 20.0%
! TAATAACAAGACAAACACAA+AGG - chr5_1:27085191-27085210 Msa0726340:three_prime_UTR 25.0%
! AAAAAGAAGTTTGTGTTTGT+TGG + chr5_1:27085301-27085320 None:intergenic 25.0%
! GACAATGCATTATTATATGT+AGG - chr5_1:27085819-27085838 Msa0726340:intron 25.0%
! CAATGCATTATTATATGTAG+GGG - chr5_1:27085821-27085840 Msa0726340:intron 25.0%
!!! TCTACATATTTTTTTTGGTC+AGG + chr5_1:27085892-27085911 None:intergenic 25.0%
!!! TGATCCTTTTAAATTTCTAG+CGG - chr5_1:27086008-27086027 Msa0726340:intron 25.0%
! ATTTGATATAGTGATCCAAT+AGG - chr5_1:27086324-27086343 Msa0726340:intron 25.0%
!!! ATATTCGTTTTCCTTGTTTT+TGG + chr5_1:27086361-27086380 None:intergenic 25.0%
!!! GATATTGTTTTATTGACATG+TGG + chr5_1:27086527-27086546 None:intergenic 25.0%
!! ACAATATCTGAAATACAACT+TGG - chr5_1:27086539-27086558 Msa0726340:CDS 25.0%
!! GTAAATTTATCCAAAAGTGT+AGG + chr5_1:27086671-27086690 None:intergenic 25.0%
! TGGATAAATTTACCCAAATT+TGG - chr5_1:27086678-27086697 Msa0726340:CDS 25.0%
! ACGAAATTCTTATAAGCTAT+AGG + chr5_1:27087019-27087038 None:intergenic 25.0%
! GTTAGAAACTAATTCAAACT+AGG - chr5_1:27087073-27087092 Msa0726340:intron 25.0%
! TTCATGATAAAGGGAAAAAA+AGG + chr5_1:27087223-27087242 None:intergenic 25.0%
! CTTTACTTAGCATAATGTAA+GGG + chr5_1:27087412-27087431 None:intergenic 25.0%
! ACTTTACTTAGCATAATGTA+AGG + chr5_1:27087413-27087432 None:intergenic 25.0%
! ACTTAACATGATTATACTTG+AGG - chr5_1:27087849-27087868 Msa0726340:intron 25.0%
! CTCTCCTTTATAAATAATTG+CGG + chr5_1:27088292-27088311 None:intergenic 25.0%
! AATGAAAATTCAAATAGGCA+AGG - chr5_1:27088366-27088385 Msa0726340:intron 25.0%
! ATGAAAATTCAAATAGGCAA+GGG - chr5_1:27088367-27088386 Msa0726340:intron 25.0%
!! TTGTATTTAGTTCATTACTC+AGG + chr5_1:27088658-27088677 None:intergenic 25.0%
! ACAATAACAAGACAACATAA+AGG + chr5_1:27088761-27088780 None:intergenic 25.0%
! ACATTCACAAATAGTTCAAT+AGG + chr5_1:27088988-27089007 None:intergenic 25.0%
! TGAACTATTTGTGAATGTTA+TGG - chr5_1:27088990-27089009 Msa0726340:intron 25.0%
! GTTATGGACCTTATTAAAAT+AGG - chr5_1:27089006-27089025 Msa0726340:intron 25.0%
!! AATAAGTTGAAAAAAGCTTG+TGG + chr5_1:27089109-27089128 None:intergenic 25.0%
! CATACTATTAGAGAAAGATA+GGG + chr5_1:27089207-27089226 None:intergenic 25.0%
! AGGACAAGAAAATATAAATG+AGG + chr5_1:27089230-27089249 None:intergenic 25.0%
! AGTTTAAACGGAAAAAAAGT+TGG - chr5_1:27089708-27089727 Msa0726340:five_prime_UTR 25.0%
! CACAACATAACATATAGTTT+AGG + chr5_1:27089845-27089864 None:intergenic 25.0%
AAACCAAGTTGTATGTTCAA+CGG - chr5_1:27085346-27085365 Msa0726340:three_prime_UTR 30.0%
ATAAACAAAGATTTCACCTG+AGG + chr5_1:27085644-27085663 None:intergenic 30.0%
! TTGATTTTGCGATCCAAAAA+AGG - chr5_1:27086101-27086120 Msa0726340:intron 30.0%
CTATCAACTTCTACTTACAT+GGG + chr5_1:27086290-27086309 None:intergenic 30.0%
ACTATCAACTTCTACTTACA+TGG + chr5_1:27086291-27086310 None:intergenic 30.0%
TTGGATCACTATATCAAATG+AGG + chr5_1:27086323-27086342 None:intergenic 30.0%
CGGCTAAAAAATGATTTGAT+TGG + chr5_1:27086444-27086463 None:intergenic 30.0%
!!! ATCATTTTTTAGCCGTTTTG+AGG - chr5_1:27086449-27086468 Msa0726340:intron 30.0%
TTGGTAAAAGCTCTTAAATC+TGG - chr5_1:27086558-27086577 Msa0726340:CDS 30.0%
TACTAACAGACAAGTAAATG+TGG + chr5_1:27086611-27086630 None:intergenic 30.0%
GTTGACAAGATTATCTAAAG+TGG + chr5_1:27086866-27086885 None:intergenic 30.0%
! TCAATAGTCCTCTCTTTTAA+GGG - chr5_1:27087124-27087143 Msa0726340:intron 30.0%
! TTGTATTTGAGGCATTATCA+AGG + chr5_1:27087181-27087200 None:intergenic 30.0%
TGCAGAAAAGTTTGTATTTG+AGG + chr5_1:27087192-27087211 None:intergenic 30.0%
! ATAAAGGGAAAAAAAGGCAT+TGG + chr5_1:27087217-27087236 None:intergenic 30.0%
! TTTTCCCTTTATCATGAAAC+AGG - chr5_1:27087225-27087244 Msa0726340:intron 30.0%
!! TGCATAGTTCTAAACTATGT+AGG + chr5_1:27087285-27087304 None:intergenic 30.0%
GTGTCATATATGCTCTATTT+AGG - chr5_1:27087386-27087405 Msa0726340:intron 30.0%
TAAGTAAAGTCTCAAACTCT+TGG - chr5_1:27087423-27087442 Msa0726340:intron 30.0%
!! AAGTGACACTCATTTTGAAA+TGG + chr5_1:27087576-27087595 None:intergenic 30.0%
TCTATATATCCTCACTATCT+TGG + chr5_1:27087892-27087911 None:intergenic 30.0%
GTTATGCATATTAGTACTGT+TGG + chr5_1:27088034-27088053 None:intergenic 30.0%
TTTGATCGCTTATTAGGATT+CGG + chr5_1:27088330-27088349 None:intergenic 30.0%
TTCAAACTCAATGTCTAAGA+TGG - chr5_1:27088419-27088438 Msa0726340:intron 30.0%
! TCTTAGATGATGGTTATAGA+TGG - chr5_1:27088886-27088905 Msa0726340:intron 30.0%
TATGGACAGAAAGTTGTTAA+AGG - chr5_1:27088915-27088934 Msa0726340:intron 30.0%
TTAAAGGAAATCCTTATCCT+AGG - chr5_1:27088931-27088950 Msa0726340:intron 30.0%
!!! GCTGTTTTAATAAGATATCC+TGG + chr5_1:27089144-27089163 None:intergenic 30.0%
GCATACTATTAGAGAAAGAT+AGG + chr5_1:27089208-27089227 None:intergenic 30.0%
CTATTACAAATGTACAACAC+CGG - chr5_1:27089289-27089308 Msa0726340:intron 30.0%
TATTACAAATGTACAACACC+GGG - chr5_1:27089290-27089309 Msa0726340:intron 30.0%
TATGTTGTTATGACTGCTTT+AGG + chr5_1:27089356-27089375 None:intergenic 30.0%
! TAACTGTGAAGCATTATTGT+TGG + chr5_1:27089435-27089454 None:intergenic 30.0%
GATTACCAGAGTCTTAATTT+AGG + chr5_1:27089575-27089594 None:intergenic 30.0%
TATCCTTTAACTCTATCATC+AGG + chr5_1:27089685-27089704 None:intergenic 30.0%
TTAAACGGAAAAAAAGTTGG+TGG - chr5_1:27089711-27089730 Msa0726340:five_prime_UTR 30.0%
ATAATTTCGATGTACACAGA+AGG + chr5_1:27089769-27089788 None:intergenic 30.0%
AAGTTAGAGAGAAGAGTCAT+AGG + chr5_1:27085509-27085528 None:intergenic 35.0%
! CTCTCTAACTTATTTGCTGA+TGG - chr5_1:27085518-27085537 Msa0726340:CDS 35.0%
! TTATTTGCTGATGGTGATGA+CGG - chr5_1:27085527-27085546 Msa0726340:CDS 35.0%
AGGATCAAATCAAACGCAAT+TGG + chr5_1:27085995-27086014 None:intergenic 35.0%
!!! TCCTTTTAAATTTCTAGCGG+CGG - chr5_1:27086011-27086030 Msa0726340:intron 35.0%
ACATAGAAATGAAGGGCAAA+CGG + chr5_1:27086149-27086168 None:intergenic 35.0%
AGTCAGTTTGACCAAAAACA+AGG - chr5_1:27086347-27086366 Msa0726340:intron 35.0%
GACCTTGGAATTCTACATAA+AGG - chr5_1:27086477-27086496 Msa0726340:intron 35.0%
CACCTTTATGTAGAATTCCA+AGG + chr5_1:27086482-27086501 None:intergenic 35.0%
AGTAATTTCACCGCAAAGTT+TGG - chr5_1:27086627-27086646 Msa0726340:CDS 35.0%
AACAGTGATTCTAGTGTGTT+TGG + chr5_1:27086728-27086747 None:intergenic 35.0%
TTACTGTGGGCAAAACATTT+GGG + chr5_1:27086784-27086803 None:intergenic 35.0%
TTTACTGTGGGCAAAACATT+TGG + chr5_1:27086785-27086804 None:intergenic 35.0%
! GTCAATAGTCCTCTCTTTTA+AGG - chr5_1:27087123-27087142 Msa0726340:intron 35.0%
! CAATAGTCCTCTCTTTTAAG+GGG - chr5_1:27087125-27087144 Msa0726340:intron 35.0%
!! AATAGTCCTCTCTTTTAAGG+GGG - chr5_1:27087126-27087145 Msa0726340:intron 35.0%
! GTTCTAAACTATGTAGGCTA+CGG + chr5_1:27087279-27087298 None:intergenic 35.0%
TTGATGCAGACTACTAATGA+TGG - chr5_1:27087466-27087485 Msa0726340:intron 35.0%
!!! GACACTCATTTTGAAATGGA+GGG + chr5_1:27087572-27087591 None:intergenic 35.0%
!!! TGACACTCATTTTGAAATGG+AGG + chr5_1:27087573-27087592 None:intergenic 35.0%
AAAGTTTGAGAGGGTAAAGT+TGG + chr5_1:27087667-27087686 None:intergenic 35.0%
TGTGAGAGAAAAGTTTGAGA+GGG + chr5_1:27087676-27087695 None:intergenic 35.0%
!! TTCAAAATGAGTGTCGCTTT+AGG + chr5_1:27087811-27087830 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - chr5_1:27087812-27087831 Msa0726340:intron 35.0%
TTACTACTTCCAAGATAGTG+AGG - chr5_1:27087880-27087899 Msa0726340:intron 35.0%
CAATATCCACCATATGATGT+AGG - chr5_1:27087948-27087967 Msa0726340:intron 35.0%
CAAAGGATACCTACATCATA+TGG + chr5_1:27087960-27087979 None:intergenic 35.0%
CATATGATGTAGGTATCCTT+TGG - chr5_1:27087958-27087977 Msa0726340:intron 35.0%
CAGATGATAAATGTTCGACT+TGG + chr5_1:27088056-27088075 None:intergenic 35.0%
TTATCGACATTCAACGAAGA+AGG + chr5_1:27088126-27088145 None:intergenic 35.0%
! TTTTTCTTGACAGGACAGTT+AGG + chr5_1:27088240-27088259 None:intergenic 35.0%
TAACTGTCCTGTCAAGAAAA+AGG - chr5_1:27088239-27088258 Msa0726340:intron 35.0%
TTGATCGCTTATTAGGATTC+GGG + chr5_1:27088329-27088348 None:intergenic 35.0%
! GTGTCTTTTGATCGCTTATT+AGG + chr5_1:27088336-27088355 None:intergenic 35.0%
!! GTGCTGATTCAACTTATCAA+CGG - chr5_1:27088391-27088410 Msa0726340:intron 35.0%
! TACAAAAGCTTACCTCCTTT+TGG + chr5_1:27088553-27088572 None:intergenic 35.0%
CATAAAGGCAAAGGATTACT+CGG + chr5_1:27088746-27088765 None:intergenic 35.0%
ACAAGACAACATAAAGGCAA+AGG + chr5_1:27088755-27088774 None:intergenic 35.0%
ACAGTACTATGTGAAGTTGT+TGG + chr5_1:27088822-27088841 None:intergenic 35.0%
!! GTAGTTTGCACGATGATTTT+AGG + chr5_1:27088852-27088871 None:intergenic 35.0%
ATCTAAGAGATCAACTTCAC+TGG + chr5_1:27088874-27088893 None:intergenic 35.0%
! GAAGTTGATCTCTTAGATGA+TGG - chr5_1:27088876-27088895 Msa0726340:intron 35.0%
GGTTATAGATGGCGAAAATA+TGG - chr5_1:27088897-27088916 Msa0726340:intron 35.0%
CAATAGGTGAAATTAGAGTG+TGG + chr5_1:27088972-27088991 None:intergenic 35.0%
GCAGTCATAACAACATATGA+AGG - chr5_1:27089359-27089378 Msa0726340:intron 35.0%
CATTATTGTTGGCAATAGTG+TGG + chr5_1:27089424-27089443 None:intergenic 35.0%
AAAACTAGGCTTCTCAGAAA+TGG + chr5_1:27089471-27089490 None:intergenic 35.0%
!! ATTTCTGAGAAGCCTAGTTT+TGG - chr5_1:27089470-27089489 Msa0726340:CDS 35.0%
ATACCAATGCTACCAAAACT+AGG + chr5_1:27089485-27089504 None:intergenic 35.0%
!!! AGTTTTGGTAGCATTGGTAT+TGG - chr5_1:27089485-27089504 Msa0726340:CDS 35.0%
AAGCTCCTAAATTAAGACTC+TGG - chr5_1:27089567-27089586 Msa0726340:CDS 35.0%
AGTCCTGATGATAGAGTTAA+AGG - chr5_1:27089679-27089698 Msa0726340:exon 35.0%
!! AAAAAGTTGGTGGAGATAAC+AGG - chr5_1:27089721-27089740 Msa0726340:five_prime_UTR 35.0%
!! AAAAGTTGGTGGAGATAACA+GGG - chr5_1:27089722-27089741 Msa0726340:five_prime_UTR 35.0%
TGTATGTTCAACGGTGGAAA+TGG - chr5_1:27085355-27085374 Msa0726340:three_prime_UTR 40.0%
! TGGTTTCTTTTCACATCCTC+AGG - chr5_1:27085625-27085644 Msa0726340:CDS 40.0%
GCATTATTATATGTAGGGGC+CGG - chr5_1:27085825-27085844 Msa0726340:intron 40.0%
CATTATTATATGTAGGGGCC+GGG - chr5_1:27085826-27085845 Msa0726340:intron 40.0%
ATTATTATATGTAGGGGCCG+GGG - chr5_1:27085827-27085846 Msa0726340:intron 40.0%
TCCGCCGCTAGAAATTTAAA+AGG + chr5_1:27086015-27086034 None:intergenic 40.0%
!!! TTTTAAATTTCTAGCGGCGG+AGG - chr5_1:27086014-27086033 Msa0726340:intron 40.0%
!!! TGCACTGCACTAACCTTTTT+TGG + chr5_1:27086117-27086136 None:intergenic 40.0%
ATAGAAATGAAGGGCAAACG+GGG + chr5_1:27086147-27086166 None:intergenic 40.0%
CATAGAAATGAAGGGCAAAC+GGG + chr5_1:27086148-27086167 None:intergenic 40.0%
! TTGGTCAAACTGACTCCTAT+TGG + chr5_1:27086342-27086361 None:intergenic 40.0%
!!! TTTTAGCCGTTTTGAGGTAG+AGG - chr5_1:27086455-27086474 Msa0726340:intron 40.0%
AATTCCTGAGCCAAACTTTG+CGG + chr5_1:27086640-27086659 None:intergenic 40.0%
CCTGCCTGTTTCATGATAAA+GGG + chr5_1:27087232-27087251 None:intergenic 40.0%
TCCTGCCTGTTTCATGATAA+AGG + chr5_1:27087233-27087252 None:intergenic 40.0%
ACAGAGACACGTCTAATTTC+AGG + chr5_1:27087319-27087338 None:intergenic 40.0%
TATCAAGACACCAATGCACT+TGG + chr5_1:27087344-27087363 None:intergenic 40.0%
! AAGTGCATTGGTGTCTTGAT+AGG - chr5_1:27087343-27087362 Msa0726340:intron 40.0%
GTGTGAGAGAAAAGTTTGAG+AGG + chr5_1:27087677-27087696 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr5_1:27087816-27087835 Msa0726340:intron 40.0%
AGGATACCTACATCATATGG+TGG + chr5_1:27087957-27087976 None:intergenic 40.0%
GGCTACAATTGGAGGAAATA+TGG - chr5_1:27088159-27088178 Msa0726340:intron 40.0%
GAGGAAATATGGACAGAAAC+AGG - chr5_1:27088170-27088189 Msa0726340:intron 40.0%
TATGGACAGAAACAGGTGAA+AGG - chr5_1:27088177-27088196 Msa0726340:intron 40.0%
GTGCACTTGTAATAACTTCG+AGG + chr5_1:27088213-27088232 None:intergenic 40.0%
GTTCATTACTCAGGTGCATT+GGG + chr5_1:27088649-27088668 None:intergenic 40.0%
AGTTCATTACTCAGGTGCAT+TGG + chr5_1:27088650-27088669 None:intergenic 40.0%
GATGCATATCACCTAGGATA+AGG + chr5_1:27088945-27088964 None:intergenic 40.0%
TAGGTGAAATTAGAGTGTGG+AGG + chr5_1:27088969-27088988 None:intergenic 40.0%
CTTATTTCCATAAGCTCTCC+AGG - chr5_1:27089123-27089142 Msa0726340:intron 40.0%
AAGATATCCTGGAGAGCTTA+TGG + chr5_1:27089133-27089152 None:intergenic 40.0%
!!! AAGCCTAGTTTTGGTAGCAT+TGG - chr5_1:27089479-27089498 Msa0726340:CDS 40.0%
!! TTTGGTAGCATTGGTATTGG+CGG - chr5_1:27089488-27089507 Msa0726340:CDS 40.0%
AACAACCTGTTGCTCATCTA+AGG - chr5_1:27089522-27089541 Msa0726340:CDS 40.0%
!! AAAGTTGGTGGAGATAACAG+GGG - chr5_1:27089723-27089742 Msa0726340:five_prime_UTR 40.0%
CCACCGTTGAACATACAACT+TGG + chr5_1:27085352-27085371 None:intergenic 45.0%
CCAAGTTGTATGTTCAACGG+TGG - chr5_1:27085349-27085368 Msa0726340:three_prime_UTR 45.0%
GCTTCTTCTTCTTCCTTCCA+CGG + chr5_1:27085389-27085408 None:intergenic 45.0%
GTGGAAGGAAGAAGAAGAAG+CGG - chr5_1:27085388-27085407 Msa0726340:three_prime_UTR 45.0%
GAAGAAGAAGAAGCGGCAAT+TGG - chr5_1:27085395-27085414 Msa0726340:three_prime_UTR 45.0%
AGAGAAGAGTCATAGGACCA+GGG + chr5_1:27085502-27085521 None:intergenic 45.0%
ACCAGATGAATCAAACCCAC+CGG + chr5_1:27085609-27085628 None:intergenic 45.0%
TTGCCTAGTGGCTAGAAAGT+GGG + chr5_1:27085869-27085888 None:intergenic 45.0%
!! TTTTTGGTCAGGTTGCCTAG+TGG + chr5_1:27085881-27085900 None:intergenic 45.0%
!! TGTCTCGTGTCATTTGCAGT+AGG - chr5_1:27085916-27085935 Msa0726340:intron 45.0%
!! TGTCTCGTGTCATTTGCAGT+AGG - chr5_1:27085916-27085935 Msa0726340:intron 45.0%
CAAGGTCCTCTACCTCAAAA+CGG + chr5_1:27086464-27086483 None:intergenic 45.0%
! GTTTTGCCCACAGTAAAGCT+TGG - chr5_1:27086788-27086807 Msa0726340:CDS 45.0%
CCTCTTCCAAGCTTTACTGT+GGG + chr5_1:27086797-27086816 None:intergenic 45.0%
ACCTCTTCCAAGCTTTACTG+TGG + chr5_1:27086798-27086817 None:intergenic 45.0%
CCCTTTATCATGAAACAGGC+AGG - chr5_1:27087229-27087248 Msa0726340:intron 45.0%
!! ATGAGTGTCGCTTTAGGCTT+TGG + chr5_1:27087805-27087824 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr5_1:27087815-27087834 Msa0726340:intron 45.0%
! TTGCTGCTGTGTCATTCCAA+AGG + chr5_1:27087977-27087996 None:intergenic 45.0%
AGAAGGCTGCAACCTTTGTT+CGG + chr5_1:27088109-27088128 None:intergenic 45.0%
CCTCCAATTGTAGCCATCAT+CGG + chr5_1:27088154-27088173 None:intergenic 45.0%
! CGCTCAACCTTTTTCTTGAC+AGG + chr5_1:27088249-27088268 None:intergenic 45.0%
CTGTTGCCTGACTAGATTCA+GGG + chr5_1:27088446-27088465 None:intergenic 45.0%
GCAACAGGTGAACATCTATC+TGG - chr5_1:27088459-27088478 Msa0726340:intron 45.0%
! ATCTGGAACGAGTGATAGTG+AGG - chr5_1:27088476-27088495 Msa0726340:intron 45.0%
! ACGAGTGATAGTGAGGATGT+AGG - chr5_1:27088483-27088502 Msa0726340:intron 45.0%
AGGTGATCGTGAAACAGAAG+TGG - chr5_1:27088503-27088522 Msa0726340:intron 45.0%
!!! AGCTTACCTCCTTTTGGAGT+CGG + chr5_1:27088547-27088566 None:intergenic 45.0%
TGCTTTCGAACGTTACAACC+CGG + chr5_1:27089311-27089330 None:intergenic 45.0%
! ACGTTCGAAAGCATGTAGAG+AGG - chr5_1:27089318-27089337 Msa0726340:intron 45.0%
! CGTTCGAAAGCATGTAGAGA+GGG - chr5_1:27089319-27089338 Msa0726340:intron 45.0%
!! TGGCTATTAGTCTTAGCTGC+TGG + chr5_1:27089404-27089423 None:intergenic 45.0%
!! TTGGTAGCATTGGTATTGGC+GGG - chr5_1:27089489-27089508 Msa0726340:CDS 45.0%
TTCAGCCTTAGATGAGCAAC+AGG + chr5_1:27089530-27089549 None:intergenic 45.0%
! TGTTGCTCATCTAAGGCTGA+AGG - chr5_1:27089529-27089548 Msa0726340:CDS 45.0%
GTTCAACGGTGGAAATGGAC+CGG - chr5_1:27085360-27085379 Msa0726340:three_prime_UTR 50.0%
TCTTCTTCTTCCTTCCACGG+TGG + chr5_1:27085386-27085405 None:intergenic 50.0%
GAAGAAGAAGCGGCAATTGG+CGG - chr5_1:27085398-27085417 Msa0726340:three_prime_UTR 50.0%
CTTAACTCTTCCGCCACGTA+CGG - chr5_1:27085451-27085470 Msa0726340:three_prime_UTR 50.0%
GAGAGAAGAGTCATAGGACC+AGG + chr5_1:27085503-27085522 None:intergenic 50.0%
AGATGAATCAAACCCACCGG+TGG + chr5_1:27085606-27085625 None:intergenic 50.0%
! ACCGGTGGGTTTGATTCATC+TGG - chr5_1:27085605-27085624 Msa0726340:CDS 50.0%
TACCAACCGAGCTATGCTCA+CGG + chr5_1:27085798-27085817 None:intergenic 50.0%
TGCCTAGTGGCTAGAAAGTG+GGG + chr5_1:27085868-27085887 None:intergenic 50.0%
GTTGCCTAGTGGCTAGAAAG+TGG + chr5_1:27085870-27085889 None:intergenic 50.0%
!!! CGTTTTGAGGTAGAGGACCT+TGG - chr5_1:27086462-27086481 Msa0726340:intron 50.0%
! TTCACCGCAAAGTTTGGCTC+AGG - chr5_1:27086633-27086652 Msa0726340:CDS 50.0%
GGGCAAAACATTTGGGTCTC+TGG + chr5_1:27086777-27086796 None:intergenic 50.0%
CCCACAGTAAAGCTTGGAAG+AGG - chr5_1:27086794-27086813 Msa0726340:CDS 50.0%
GTCTCTGTGTCCAAGTGCAT+TGG - chr5_1:27087331-27087350 Msa0726340:intron 50.0%
! TTCGGAGAGAGGAGCATGAT+CGG + chr5_1:27088091-27088110 None:intergenic 50.0%
ATGCTCCTCTCTCCGAACAA+AGG - chr5_1:27088094-27088113 Msa0726340:intron 50.0%
TGCAACCTTTGTTCGGAGAG+AGG + chr5_1:27088102-27088121 None:intergenic 50.0%
CAATTGTAGCCATCATCGGC+AGG + chr5_1:27088150-27088169 None:intergenic 50.0%
! CTGCCGATGATGGCTACAAT+TGG - chr5_1:27088148-27088167 Msa0726340:intron 50.0%
! CCGATGATGGCTACAATTGG+AGG - chr5_1:27088151-27088170 Msa0726340:intron 50.0%
GATGGACCCTGAATCTAGTC+AGG - chr5_1:27088437-27088456 Msa0726340:intron 50.0%
CCTGTTGCCTGACTAGATTC+AGG + chr5_1:27088447-27088466 None:intergenic 50.0%
CCTGAATCTAGTCAGGCAAC+AGG - chr5_1:27088444-27088463 Msa0726340:intron 50.0%
GAATTGAGCCCGACTCCAAA+AGG - chr5_1:27088535-27088554 Msa0726340:intron 50.0%
!!! GCTTACCTCCTTTTGGAGTC+GGG + chr5_1:27088546-27088565 None:intergenic 50.0%
GGAGGAGATGCATATCACCT+AGG + chr5_1:27088951-27088970 None:intergenic 50.0%
!! TGGTAGCATTGGTATTGGCG+GGG - chr5_1:27089490-27089509 Msa0726340:CDS 50.0%
AGAGTTAAGGTGGGTCGCTG+TGG + chr5_1:27085440-27085459 None:intergenic 55.0%
! CGTGGCGGAAGAGTTAAGGT+GGG + chr5_1:27085449-27085468 None:intergenic 55.0%
! ACGTGGCGGAAGAGTTAAGG+TGG + chr5_1:27085450-27085469 None:intergenic 55.0%
! CGTACGTGGCGGAAGAGTTA+AGG + chr5_1:27085453-27085472 None:intergenic 55.0%
! AAAAGTGCGTCCGTACGTGG+CGG + chr5_1:27085464-27085483 None:intergenic 55.0%
! GTGAAAAGTGCGTCCGTACG+TGG + chr5_1:27085467-27085486 None:intergenic 55.0%
! CGTACGGACGCACTTTTCAC+CGG - chr5_1:27085467-27085486 Msa0726340:three_prime_UTR 55.0%
!!! TTCACCGGTGGTTTTAGCCC+TGG - chr5_1:27085482-27085501 Msa0726340:exon 55.0%
AGGACCAGGGCTAAAACCAC+CGG + chr5_1:27085489-27085508 None:intergenic 55.0%
TCCTTCTCTCAGCTTCTCGC+CGG - chr5_1:27085554-27085573 Msa0726340:CDS 55.0%
AGTGTCCCGTGAGCATAGCT+CGG - chr5_1:27085789-27085808 Msa0726340:intron 55.0%
ACCAACCGAGCTATGCTCAC+GGG + chr5_1:27085797-27085816 None:intergenic 55.0%
GTGAGCATAGCTCGGTTGGT+AGG - chr5_1:27085797-27085816 Msa0726340:intron 55.0%
! GCTAGAAAGTGGGGTGTCCA+GGG + chr5_1:27085859-27085878 None:intergenic 55.0%
! CACCCCACTTTCTAGCCACT+AGG - chr5_1:27085863-27085882 Msa0726340:intron 55.0%
CGGTCACCCCCTTAAAAGAG+AGG + chr5_1:27087135-27087154 None:intergenic 55.0%
ACAGCAGCAACCACTGACAC+AGG - chr5_1:27087987-27088006 Msa0726340:intron 55.0%
GCAACCACTGACACAGGTCT+CGG - chr5_1:27087993-27088012 Msa0726340:intron 55.0%
GGAGCATGATCGGTGGATGT+TGG + chr5_1:27088081-27088100 None:intergenic 55.0%
GTCGATAAGCCTGCCGATGA+TGG - chr5_1:27088138-27088157 Msa0726340:intron 55.0%
AAGGTTGAGCGTTCGCTTGC+TGG - chr5_1:27088258-27088277 Msa0726340:intron 55.0%
TTGAGCCCGACTCCAAAAGG+AGG - chr5_1:27088538-27088557 Msa0726340:intron 55.0%
GCATGTAGAGAGGGCTTCGA+CGG - chr5_1:27089328-27089347 Msa0726340:intron 55.0%
!! GGTAGCATTGGTATTGGCGG+GGG - chr5_1:27089491-27089510 Msa0726340:CDS 55.0%
CTTCTTCCTTCCACGGTGGC+CGG + chr5_1:27085382-27085401 None:intergenic 60.0%
GAAGAAGCGGCAATTGGCGG+TGG - chr5_1:27085401-27085420 Msa0726340:three_prime_UTR 60.0%
GTTAAGGTGGGTCGCTGTGG+TGG + chr5_1:27085437-27085456 None:intergenic 60.0%
! ACGGACGCACTTTTCACCGG+TGG - chr5_1:27085470-27085489 Msa0726340:three_prime_UTR 60.0%
ACCGGCGAGAAGCTGAGAGA+AGG + chr5_1:27085558-27085577 None:intergenic 60.0%
TCTCCGGCAACGGTAACCAC+CGG - chr5_1:27085587-27085606 Msa0726340:CDS 60.0%
TCCCGTGAGCATAGCTCGGT+TGG - chr5_1:27085793-27085812 Msa0726340:intron 60.0%
! GGCTAGAAAGTGGGGTGTCC+AGG + chr5_1:27085860-27085879 None:intergenic 60.0%
TGAGCCGAGACCTGTGTCAG+TGG + chr5_1:27088000-27088019 None:intergenic 60.0%
ACACAGGTCTCGGCTCACGA+AGG - chr5_1:27088003-27088022 Msa0726340:intron 60.0%
! GGAGAGAGGAGCATGATCGG+TGG + chr5_1:27088088-27088107 None:intergenic 60.0%
TGGAAATGGACCGGCCACCG+TGG - chr5_1:27085369-27085388 Msa0726340:three_prime_UTR 65.0%
AATGGACCGGCCACCGTGGA+AGG - chr5_1:27085373-27085392 Msa0726340:three_prime_UTR 65.0%
CGGCAATTGGCGGTGGCGAA+GGG - chr5_1:27085408-27085427 Msa0726340:three_prime_UTR 65.0%
GGCAATTGGCGGTGGCGAAG+GGG - chr5_1:27085409-27085428 Msa0726340:three_prime_UTR 65.0%
GCAATTGGCGGTGGCGAAGG+GGG - chr5_1:27085410-27085429 Msa0726340:three_prime_UTR 65.0%
! TCAGCTTCTCGCCGGTGCCA+CGG - chr5_1:27085562-27085581 Msa0726340:CDS 65.0%
TGCCACGGTGTCTCCGGCAA+CGG - chr5_1:27085577-27085596 Msa0726340:CDS 65.0%
TACCGTTGCCGGAGACACCG+TGG + chr5_1:27085582-27085601 None:intergenic 65.0%
CCACCGGTGGTTACCGTTGC+CGG + chr5_1:27085593-27085612 None:intergenic 65.0%
CGGCAACGGTAACCACCGGT+GGG - chr5_1:27085591-27085610 Msa0726340:CDS 65.0%
GGTGTCCAGGGTTCGAACCC+CGG + chr5_1:27085847-27085866 None:intergenic 65.0%
GCGGCAATTGGCGGTGGCGA+AGG - chr5_1:27085407-27085426 Msa0726340:three_prime_UTR 70.0%
TGCCGGAGACACCGTGGCAC+CGG + chr5_1:27085576-27085595 None:intergenic 70.0%
CCGGCAACGGTAACCACCGG+TGG - chr5_1:27085590-27085609 Msa0726340:CDS 70.0%
!! CGCCGGTGCCACGGTGTCTC+CGG - chr5_1:27085571-27085590 Msa0726340:CDS 75.0%
AGGGGCCGGGGTTCGAACCC+TGG - chr5_1:27085839-27085858 Msa0726340:intron 75.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 27085160 27089901 27085160 ID=Msa0726340;Name=Msa0726340
chr5_1 mRNA 27085160 27089901 27085160 ID=Msa0726340-mRNA-1;Parent=Msa0726340;Name=Msa0726340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=214|1|1|1|1|1|4|333|434
chr5_1 exon 27085160 27085775 27085160 ID=Msa0726340-mRNA-1:exon:9590;Parent=Msa0726340-mRNA-1
chr5_1 exon 27086109 27086267 27086109 ID=Msa0726340-mRNA-1:exon:9589;Parent=Msa0726340-mRNA-1
chr5_1 exon 27086502 27087091 27086502 ID=Msa0726340-mRNA-1:exon:9588;Parent=Msa0726340-mRNA-1
chr5_1 exon 27089415 27089901 27089415 ID=Msa0726340-mRNA-1:exon:9587;Parent=Msa0726340-mRNA-1
chr5_1 five_prime_UTR 27089688 27089901 27089688 ID=Msa0726340-mRNA-1:five_prime_utr;Parent=Msa0726340-mRNA-1
chr5_1 CDS 27089415 27089687 27089415 ID=Msa0726340-mRNA-1:cds;Parent=Msa0726340-mRNA-1
chr5_1 CDS 27086502 27087091 27086502 ID=Msa0726340-mRNA-1:cds;Parent=Msa0726340-mRNA-1
chr5_1 CDS 27086109 27086267 27086109 ID=Msa0726340-mRNA-1:cds;Parent=Msa0726340-mRNA-1
chr5_1 CDS 27085493 27085775 27085493 ID=Msa0726340-mRNA-1:cds;Parent=Msa0726340-mRNA-1
chr5_1 three_prime_UTR 27085160 27085492 27085160 ID=Msa0726340-mRNA-1:three_prime_utr;Parent=Msa0726340-mRNA-1
Gene Sequence

>Msa0726340

ATGGACCGGCCACCGTGGAAGGAAGAAGAAGAAGCGGCAATTGGCGGTGGCGAAGGGGGACCACCACAGCGACCCACCTTAACTCTTCCGCCACGTACGGACGCACTTTTCACCGGTGGTTTTAGCCCTGGTCCTATGACTCTTCTCTCTAACTTATTTGCTGATGGTGATGACGGCAAGTCCTTCTCTCAGCTTCTCGCCGGTGCCACGGTGTCTCCGGCAACGGTAACCACCGGTGGGTTTGATTCATCTGGTTTCTTTTCACATCCTCAGGTATCCTTTGGAATGACACAGCAGCAACCACTGACACAGGTCTCGGCTCACGAAGGACAATCCAACAGTACTAATATGCATAACCAAGTCGAACATTTATCATCTGTACCAACATCCACCGATCATGCTCCTCTCTCCGAACAAAGGTTGCAGCCTTCTTCGTTGAATGTCGATAAGCCTGCCGATGATGGCTACAATTGGAGGAAATATGGACAGAAACAGGTGAAAGGTAGCGAGTTTCCTCGAAGTTATTACAAGTGCACGCATCCTAACTGTCCTGTCAAGAAAAAGGTTGAGCGTTCGCTTGCTGGTCATATAACCGCAATTATTTATAAAGGAGAGCACAATCATCAACTCCCGAATCCTAATAAGCGATCAAAAGACACTGTAACTTCAAATGAAAATTCAAATAGGCAAGGGAGTGCTGATTCAACTTATCAACGGATGACTTCAAACTCAATGTCTAAGATGGACCCTGAATCTAGTCAGGCAACAGGTGAACATCTATCTGGAACGAGTGATAGTGAGGATGTAGGTGATCGTGAAACAGAAGTGGATGAGAAAAGAATTGAGCCCGACTCCAAAAGGAGACATACAGAAGTCACAGTCTCAAATCCAACAACTTCACATAGTACTGTCACAGAGCCTAAAATCATCGTGCAAACTACCAGTGAAGTTGATCTCTTAGATGATGGTTATAGATGGCGAAAATATGGACAGAAAGTTGTTAAAGGAAATCCTTATCCTAGGAGCTATTACAAATGTACAACACCGGGTTGTAACGTTCGAAAGCATGTAGAGAGGGCTTCGACGGATCCTAAAGCAGTCATAACAACATATGAAGGAAAACATAATCATGATGTTCCAGCAGCTAAGACTAATAGCCACACTATTGCCAACAATAATGCTTCACAGTTAAAATCGCAAAATACCATTTCTGAGAAGCCTAGTTTTGGTAGCATTGGTATTGGCGGGGGCAACGAGCAACAACCTGTTGCTCATCTAAGGCTGAAGGAAGAGCAGATAACTTAA
Protein sequence

>Msa0726340

MDRPPWKEEEEAAIGGGEGGPPQRPTLTLPPRTDALFTGGFSPGPMTLLSNLFADGDDGKSFSQLLAGATVSPATVTTGGFDSSGFFSHPQVSFGMTQQQPLTQVSAHEGQSNSTNMHNQVEHLSSVPTSTDHAPLSEQRLQPSSLNVDKPADDGYNWRKYGQKQVKGSEFPRSYYKCTHPNCPVKKKVERSLAGHITAIIYKGEHNHQLPNPNKRSKDTVTSNENSNRQGSADSTYQRMTSNSMSKMDPESSQATGEHLSGTSDSEDVGDRETEVDEKRIEPDSKRRHTEVTVSNPTTSHSTVTEPKIIVQTTSEVDLLDDGYRWRKYGQKVVKGNPYPRSYYKCTTPGCNVRKHVERASTDPKAVITTYEGKHNHDVPAAKTNSHTIANNNASQLKSQNTISEKPSFGSIGIGGGNEQQPVAHLRLKEEQIT*