AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0726790

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726790 MtrunA17_Chr5g0418781 85.612 278 19 2 1 257 1 278 4.04e-158 440
Msa0726790 MtrunA17_Chr1g0194481 43.979 191 84 4 81 249 132 321 3.74e-40 141
Msa0726790 MtrunA17_Chr7g0270191 45.550 191 64 7 81 249 119 291 3.12e-36 130
Msa0726790 MtrunA17_Chr4g0051881 48.045 179 74 6 93 256 164 338 2.37e-35 129
Msa0726790 MtrunA17_Chr5g0443131 77.778 72 12 1 93 160 143 214 1.04e-34 126
Msa0726790 MtrunA17_Chr2g0294231 76.712 73 13 1 91 159 187 259 5.51e-33 123
Msa0726790 MtrunA17_Chr8g0335811 61.446 83 28 1 81 159 128 210 3.05e-28 107
Msa0726790 MtrunA17_Chr3g0129361 63.514 74 23 1 90 159 127 200 1.14e-26 103
Msa0726790 MtrunA17_Chr4g0068541 56.250 96 35 2 91 179 192 287 1.90e-26 106
Msa0726790 MtrunA17_Chr7g0248721 55.914 93 36 2 72 159 104 196 8.45e-26 100
Msa0726790 MtrunA17_Chr8g0383351 62.667 75 23 2 90 159 142 216 5.22e-25 99.4
Msa0726790 MtrunA17_Chr7g0224801 60.870 69 23 1 95 159 81 149 1.55e-23 93.6
Msa0726790 MtrunA17_Chr3g0079691 53.191 94 39 2 71 159 458 551 1.30e-22 96.7
Msa0726790 MtrunA17_Chr3g0079691 36.800 125 67 4 44 159 214 335 5.90e-14 71.2
Msa0726790 MtrunA17_Chr5g0445311 52.083 96 38 3 88 176 345 439 2.06e-22 95.9
Msa0726790 MtrunA17_Chr5g0445311 57.143 56 19 2 108 159 201 255 4.82e-11 62.4
Msa0726790 MtrunA17_Chr3g0101131 59.211 76 27 1 88 159 396 471 2.21e-22 95.9
Msa0726790 MtrunA17_Chr3g0101131 54.386 57 21 2 107 159 243 298 6.24e-11 62.0
Msa0726790 MtrunA17_Chr7g0218081 46.429 112 50 3 87 194 390 495 2.62e-22 95.5
Msa0726790 MtrunA17_Chr7g0218081 42.697 89 31 3 90 159 196 283 1.76e-12 66.6
Msa0726790 MtrunA17_Chr1g0150801 52.381 84 36 1 80 159 75 158 1.03e-21 88.6
Msa0726790 MtrunA17_Chr8g0386241 47.561 82 39 1 82 159 78 159 2.14e-21 88.2
Msa0726790 MtrunA17_Chr5g0418191 53.947 76 31 1 88 159 301 376 4.36e-21 91.7
Msa0726790 MtrunA17_Chr5g0418191 54.386 57 21 2 107 159 151 206 4.28e-11 62.4
Msa0726790 MtrunA17_Chr3g0106491 53.846 78 32 1 86 159 344 421 4.42e-21 92.0
Msa0726790 MtrunA17_Chr3g0129321 52.055 73 31 1 93 161 104 176 4.79e-21 87.8
Msa0726790 MtrunA17_Chr4g0042831 52.632 76 32 1 88 159 259 334 5.16e-20 88.2
Msa0726790 MtrunA17_Chr4g0042831 34.862 109 58 4 78 180 118 219 7.61e-12 64.7
Msa0726790 MtrunA17_Chr4g0004911 50.633 79 35 1 85 159 314 392 2.05e-19 87.0
Msa0726790 MtrunA17_Chr4g0004911 54.386 57 22 1 107 159 184 240 2.63e-12 66.2
Msa0726790 MtrunA17_Chr5g0432161 50.000 82 37 1 82 159 396 477 3.09e-19 86.7
Msa0726790 MtrunA17_Chr8g0383251 33.974 156 83 3 8 159 25 164 3.21e-19 82.4
Msa0726790 MtrunA17_Chr7g0249311 50.000 76 34 1 88 159 373 448 3.55e-19 86.7
Msa0726790 MtrunA17_Chr7g0249311 59.649 57 18 2 107 159 179 234 2.44e-13 69.3
Msa0726790 MtrunA17_Chr7g0238921 37.342 158 78 5 107 251 124 273 1.03e-18 84.0
Msa0726790 MtrunA17_Chr7g0249301 49.351 77 35 1 87 159 272 348 1.18e-18 84.3
Msa0726790 MtrunA17_Chr7g0249301 37.405 131 63 6 52 170 5 128 3.02e-13 68.6
Msa0726790 MtrunA17_Chr7g0243891 50.000 76 34 1 88 159 355 430 2.32e-18 84.0
Msa0726790 MtrunA17_Chr1g0188941 47.945 73 34 1 91 159 35 107 2.33e-17 75.9
Msa0726790 MtrunA17_Chr5g0447701 54.286 70 28 1 94 159 239 308 7.89e-16 76.3
Msa0726790 MtrunA17_Chr7g0263531 45.946 74 36 1 90 159 344 417 7.92e-16 76.6
Msa0726790 MtrunA17_Chr2g0322391 41.860 86 45 2 79 159 321 406 4.33e-15 74.7
Msa0726790 MtrunA17_Chr2g0288871 35.119 168 86 8 10 159 200 362 8.43e-15 73.6
Msa0726790 MtrunA17_Chr6g0485431 43.590 78 36 3 93 165 140 214 9.64e-15 72.8
Msa0726790 MtrunA17_Chr3g0099641 44.000 75 37 2 90 159 234 308 4.03e-14 71.6
Msa0726790 MtrunA17_Chr2g0333851 47.945 73 31 3 94 159 154 226 7.17e-14 70.1
Msa0726790 MtrunA17_Chr4g0075201 45.333 75 36 2 90 159 250 324 1.43e-13 70.1
Msa0726790 MtrunA17_Chr7g0270831 45.333 75 36 2 90 159 199 273 4.15e-13 68.6
Msa0726790 MtrunA17_Chr1g0150281 41.892 74 34 3 95 159 124 197 4.82e-13 67.4
Msa0726790 MtrunA17_Chr4g0074001 44.000 75 38 1 91 161 343 417 5.38e-13 68.2
Msa0726790 MtrunA17_Chr1g0189391 43.243 74 37 2 94 162 84 157 1.29e-12 66.6
Msa0726790 MtrunA17_Chr1g0147881 40.244 82 44 2 83 159 238 319 1.50e-12 66.6
Msa0726790 MtrunA17_Chr4g0071521 36.458 96 56 2 82 172 220 315 1.72e-12 66.2
Msa0726790 MtrunA17_Chr3g0136961 48.333 60 26 2 105 159 136 195 2.62e-12 65.5
Msa0726790 MtrunA17_Chr4g0060271 36.842 114 59 4 59 159 199 312 3.12e-12 66.2
Msa0726790 MtrunA17_Chr5g0401821 42.169 83 43 2 82 159 174 256 3.39e-12 64.7
Msa0726790 MtrunA17_Chr4g0025061 33.333 150 84 5 16 159 278 417 3.45e-12 65.9
Msa0726790 MtrunA17_Chr2g0284321 47.692 65 28 3 108 167 36 99 7.47e-12 63.2
Msa0726790 MtrunA17_Chr7g0216891 36.752 117 55 5 59 159 163 276 1.76e-11 63.9
Msa0726790 MtrunA17_Chr4g0051181 43.243 74 37 2 91 159 227 300 4.25e-11 62.4
Msa0726790 MtrunA17_Chr5g0447711 44.444 72 36 1 92 159 215 286 6.03e-11 61.6
Msa0726790 MtrunA17_Chr8g0348311 49.123 57 24 2 108 159 156 212 9.18e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726790 AT1G69310.3 55.556 207 73 4 51 251 89 282 1.33e-64 203
Msa0726790 AT1G69310.4 54.502 211 73 5 51 251 89 286 2.60e-62 197
Msa0726790 AT1G69310.2 54.502 211 73 5 51 251 89 286 2.60e-62 197
Msa0726790 AT1G69310.1 54.502 211 73 5 51 251 89 286 2.60e-62 197
Msa0726790 AT4G18170.1 73.494 83 18 1 81 159 146 228 1.11e-35 129
Msa0726790 AT2G47260.1 73.494 83 18 1 81 159 148 230 1.52e-35 129
Msa0726790 AT1G29860.1 75.342 73 14 1 91 159 120 192 1.97e-32 120
Msa0726790 AT5G46350.1 76.056 71 13 1 93 159 169 239 3.92e-32 120
Msa0726790 AT5G49520.1 39.779 181 88 5 91 250 205 385 3.77e-30 116
Msa0726790 AT4G39410.1 50.450 111 46 2 83 189 199 304 6.03e-29 111
Msa0726790 AT2G44745.1 61.446 83 28 1 81 159 119 201 1.93e-28 108
Msa0726790 AT2G46130.2 61.111 72 28 0 88 159 11 82 1.09e-26 100
Msa0726790 AT3G62340.1 60.976 82 26 2 82 159 95 174 1.39e-26 104
Msa0726790 AT2G46130.1 57.895 76 28 1 88 159 11 86 2.41e-24 94.4
Msa0726790 AT1G64000.1 53.659 82 34 1 82 159 89 170 8.05e-24 95.5
Msa0726790 AT5G13080.1 61.429 70 23 1 94 159 54 123 1.08e-23 93.6
Msa0726790 AT5G41570.1 53.409 88 36 2 77 159 67 154 4.22e-23 93.2
Msa0726790 AT3G01970.1 60.000 70 24 1 94 159 52 121 1.83e-22 90.5
Msa0726790 AT5G26170.1 57.534 73 27 1 94 162 100 172 4.72e-22 90.1
Msa0726790 AT5G07100.2 38.158 152 76 5 24 168 65 205 1.87e-21 89.7
Msa0726790 AT5G07100.4 38.158 152 76 5 24 168 65 205 1.87e-21 89.7
Msa0726790 AT5G07100.5 38.158 152 76 5 24 168 65 205 1.87e-21 89.7
Msa0726790 AT5G07100.3 38.158 152 76 5 24 168 65 205 1.87e-21 89.7
Msa0726790 AT5G07100.1 41.860 129 64 4 47 170 178 300 3.64e-21 90.9
Msa0726790 AT1G13960.1 53.947 76 31 1 88 159 390 465 5.91e-21 92.0
Msa0726790 AT1G13960.1 57.895 57 19 2 107 159 229 284 1.37e-12 67.4
Msa0726790 AT1G13960.2 55.405 74 29 1 90 159 239 312 7.09e-21 90.9
Msa0726790 AT1G13960.2 57.895 57 19 2 107 159 76 131 2.97e-12 66.2
Msa0726790 AT4G26640.5 41.304 138 59 5 33 159 135 261 7.19e-21 90.9
Msa0726790 AT4G26640.5 56.140 57 20 2 107 159 35 90 4.40e-11 62.8
Msa0726790 AT4G26640.6 41.304 138 59 5 33 159 135 261 7.19e-21 90.9
Msa0726790 AT4G26640.6 56.140 57 20 2 107 159 35 90 4.40e-11 62.8
Msa0726790 AT4G26640.4 41.304 138 59 5 33 159 135 261 7.19e-21 90.9
Msa0726790 AT4G26640.4 56.140 57 20 2 107 159 35 90 4.40e-11 62.8
Msa0726790 AT4G26640.3 41.304 138 59 5 33 159 135 261 7.19e-21 90.9
Msa0726790 AT4G26640.3 56.140 57 20 2 107 159 35 90 4.40e-11 62.8
Msa0726790 AT4G26640.7 57.895 76 28 1 88 159 322 397 1.02e-20 91.3
Msa0726790 AT4G26640.7 56.140 57 20 2 107 159 171 226 3.98e-11 63.2
Msa0726790 AT4G26640.1 41.304 138 59 5 33 159 239 365 1.14e-20 91.3
Msa0726790 AT4G26640.1 56.140 57 20 2 107 159 139 194 4.35e-11 62.8
Msa0726790 AT4G26640.2 57.895 76 28 1 88 159 362 437 1.24e-20 91.3
Msa0726790 AT4G26640.2 56.140 57 20 2 107 159 211 266 4.38e-11 63.2
Msa0726790 AT5G64810.1 45.882 85 42 1 82 162 85 169 1.29e-20 87.0
Msa0726790 AT2G03340.1 53.947 76 31 1 88 159 396 471 1.42e-20 90.9
Msa0726790 AT2G03340.1 56.140 57 20 2 107 159 250 305 1.31e-11 64.7
Msa0726790 AT3G01080.2 54.545 77 31 1 87 159 324 400 3.96e-20 89.4
Msa0726790 AT5G56270.1 56.579 76 29 1 88 159 468 543 5.30e-20 89.4
Msa0726790 AT5G56270.1 57.895 57 19 2 107 159 273 328 3.72e-12 66.2
Msa0726790 AT3G01080.1 54.545 77 31 1 87 159 286 362 5.61e-20 89.0
Msa0726790 AT2G38470.1 53.947 76 31 1 88 159 343 418 3.23e-19 87.0
Msa0726790 AT2G37260.2 41.748 103 56 1 67 165 227 329 1.93e-18 84.0
Msa0726790 AT2G37260.3 41.748 103 56 1 67 165 229 331 2.01e-18 83.6
Msa0726790 AT2G37260.1 41.748 103 56 1 67 165 309 411 2.77e-18 84.0
Msa0726790 AT2G30250.1 52.632 76 32 1 88 159 309 384 3.48e-18 83.6
Msa0726790 AT4G26440.1 53.425 73 30 1 91 159 356 428 4.97e-18 83.6
Msa0726790 AT4G26440.1 54.386 57 21 2 107 159 178 233 4.34e-11 63.2
Msa0726790 AT2G04880.2 42.857 91 45 2 94 180 270 357 6.61e-17 80.1
Msa0726790 AT2G04880.1 42.857 91 45 2 94 180 294 381 9.04e-17 79.7
Msa0726790 AT2G21900.1 42.391 92 44 3 77 159 74 165 1.87e-16 75.9
Msa0726790 AT1G55600.1 50.000 70 31 1 94 159 294 363 1.60e-15 76.3
Msa0726790 AT5G43290.1 29.545 176 94 5 94 251 100 263 2.18e-15 74.3
Msa0726790 AT4G04450.2 48.000 75 34 2 90 159 181 255 3.96e-14 72.0
Msa0726790 AT4G04450.1 48.000 75 34 2 90 159 275 349 7.83e-14 71.2
Msa0726790 AT1G62300.1 34.921 126 75 3 39 159 246 369 1.48e-13 70.5
Msa0726790 AT4G22070.4 45.333 75 36 2 90 159 280 354 3.49e-13 69.3
Msa0726790 AT4G22070.3 45.333 75 36 2 90 159 280 354 3.49e-13 69.3
Msa0726790 AT4G22070.2 45.333 75 36 2 90 159 280 354 3.49e-13 69.3
Msa0726790 AT4G22070.1 45.333 75 36 2 90 159 280 354 3.49e-13 69.3
Msa0726790 AT2G25000.2 49.153 59 25 2 106 159 102 160 6.78e-13 66.6
Msa0726790 AT2G25000.4 49.153 59 25 2 106 159 102 160 6.78e-13 66.6
Msa0726790 AT4G12020.10 41.111 90 48 2 44 132 581 666 8.64e-13 68.6
Msa0726790 AT4G12020.3 41.111 90 48 2 44 132 581 666 8.89e-13 68.6
Msa0726790 AT4G12020.6 41.111 90 48 2 44 132 581 666 9.34e-13 68.2
Msa0726790 AT4G12020.8 41.111 90 48 2 44 132 581 666 9.34e-13 68.2
Msa0726790 AT4G12020.5 41.111 90 48 2 44 132 514 599 9.55e-13 68.2
Msa0726790 AT4G12020.11 41.111 90 48 2 44 132 581 666 9.64e-13 68.2
Msa0726790 AT4G12020.4 41.111 90 48 2 44 132 581 666 9.95e-13 68.2
Msa0726790 AT4G12020.2 41.111 90 48 2 44 132 581 666 9.95e-13 68.2
Msa0726790 AT2G25000.3 49.153 59 25 2 106 159 124 182 1.01e-12 66.6
Msa0726790 AT4G12020.1 41.111 90 48 2 44 132 581 666 1.05e-12 68.2
Msa0726790 AT4G12020.9 41.111 90 48 2 44 132 581 666 1.05e-12 68.2
Msa0726790 AT4G12020.7 41.111 90 48 2 44 132 581 666 1.06e-12 68.2
Msa0726790 AT2G25000.1 49.153 59 25 2 106 159 145 203 1.25e-12 66.6
Msa0726790 AT4G31800.2 47.458 59 26 2 106 159 110 168 4.96e-12 64.3
Msa0726790 AT1G80840.1 48.333 60 24 2 106 159 145 203 5.83e-12 64.7
Msa0726790 AT4G31800.1 47.458 59 26 2 106 159 175 233 6.49e-12 64.7
Msa0726790 AT4G30935.1 42.466 73 38 1 91 159 315 387 1.26e-11 64.7
Msa0726790 AT5G15130.2 39.744 78 42 2 87 159 165 242 1.47e-11 64.3
Msa0726790 AT1G68150.1 44.595 74 36 2 91 159 219 292 1.49e-11 63.9
Msa0726790 AT4G01720.1 44.595 74 36 2 91 159 223 296 1.49e-11 64.3
Msa0726790 AT5G52830.1 41.250 80 42 2 85 159 143 222 1.60e-11 63.9
Msa0726790 AT5G15130.1 39.744 78 42 2 87 159 207 284 1.66e-11 64.3
Msa0726790 AT2G30590.1 39.759 83 45 2 82 159 288 370 3.38e-11 63.2
Msa0726790 AT1G29280.1 36.667 90 48 3 79 159 42 131 4.15e-11 62.0
Msa0726790 AT4G31550.2 39.759 83 45 2 83 160 221 303 5.53e-11 62.0
Msa0726790 AT2G24570.1 43.023 86 40 4 81 160 219 301 8.66e-11 61.6

Find 73 sgRNAs with CRISPR-Local

Find 550 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGGCGTCAGCGTCGTCTTAC+AGG 0.278972 5_1:+28182585 Msa0726790:CDS
AGTTTATCCTTGGTGGTTTC+CGG 0.298380 5_1:-28182518 None:intergenic
TACCCCGTGGAATGCGCAAC+AGG 0.355074 5_1:+28191162 Msa0726790:CDS
TATGTAGTTATAACAATTGT+TGG 0.364884 5_1:-28190864 None:intergenic
AACTCTGCAGGTAATTGAAC+AGG 0.390496 5_1:-28190996 None:intergenic
CATCCCTGTTGCGCATTCCA+CGG 0.391032 5_1:-28191166 None:intergenic
GGCTACAGATGGAGGAAGTA+TGG 0.393103 5_1:+28190000 Msa0726790:CDS
ATCCCTGTTGCGCATTCCAC+GGG 0.402445 5_1:-28191165 None:intergenic
TCAGTTGAACCGGTTTGAAC+CGG 0.404754 5_1:-28182548 None:intergenic
TTGCACCACCACTGTTTCTC+AGG 0.407420 5_1:+28191025 Msa0726790:CDS
CGATGCCGTTTCAGTTGAAC+CGG 0.425789 5_1:-28182558 None:intergenic
CTAGCCGATGAAGGACTACT+TGG 0.427250 5_1:+28191131 Msa0726790:CDS
GTAAATGCACGGTGAAGAAA+AGG 0.427885 5_1:+28190820 Msa0726790:CDS
ATCGAGCAGCGCTACAATGC+CGG 0.445819 5_1:+28191085 Msa0726790:CDS
GGCTGATGCATCACCGCCGC+TGG 0.448875 5_1:+28191106 Msa0726790:CDS
TTGCAACAGTTTATCCTTGG+TGG 0.452161 5_1:-28182525 None:intergenic
TAATAGAATTGAGGCATTGT+AGG 0.457087 5_1:-28190972 None:intergenic
AGAAGGGGCAAAAGCGAATA+CGG 0.458868 5_1:+28189926 Msa0726790:CDS
TAGGAACAAAAGTAAGAAGA+AGG 0.476897 5_1:+28189909 Msa0726790:intron
GAGGCATTGTAGGAGCAAAC+TGG 0.488963 5_1:-28190962 None:intergenic
AAGCTCCAGCGAGGATCTGC+CGG 0.489814 5_1:+28182631 Msa0726790:CDS
CTGTTGCAACCGGTTCAAAC+CGG 0.492008 5_1:+28182539 Msa0726790:CDS
ATGTAGTTATAACAATTGTT+GGG 0.492053 5_1:-28190863 None:intergenic
GTGCAAGTGTTTAACTCTGC+AGG 0.495119 5_1:-28191008 None:intergenic
TTTCTCCGGCAGATCCTCGC+TGG 0.497712 5_1:-28182636 None:intergenic
CGGTTGCAACAGTTTATCCT+TGG 0.501026 5_1:-28182528 None:intergenic
GGGATGAGAGAAATATTTGA+TGG 0.502837 5_1:+28191183 Msa0726790:CDS
CAAGGATAAACTGTTGCAAC+CGG 0.502840 5_1:+28182529 Msa0726790:CDS
ATAGGTTCGACCACATCGGC+TGG 0.509291 5_1:+28182486 Msa0726790:intron
TGACTAATGATTCCACTTCG+AGG 0.515148 5_1:-28190921 None:intergenic
AAGATGATCAACTTCACTCT+TGG 0.519601 5_1:-28189971 None:intergenic
ATTGTTATAACTACATATGA+AGG 0.523487 5_1:+28190870 Msa0726790:CDS
CCGCTGGATCTAGCCGATGA+AGG 0.527848 5_1:+28191122 Msa0726790:CDS
AACTGAAACGGCATCGGTGT+CGG 0.528007 5_1:+28182565 Msa0726790:CDS
TCAAACCGGTTCAACTGAAA+CGG 0.530264 5_1:+28182553 Msa0726790:CDS
CATCATCCTCATGAGGCCGC+TGG 0.543236 5_1:+28191059 Msa0726790:CDS
ATGGAGGAAGTATGGTCAGA+AGG 0.553401 5_1:+28190008 Msa0726790:CDS
GATCCTCCAGCGGCCTCATG+AGG 0.556070 5_1:-28191065 None:intergenic
ATCTCCAAGTAGTCCTTCAT+CGG 0.564084 5_1:-28191135 None:intergenic
TGAACAGGATAATAGAATTG+AGG 0.567757 5_1:-28190981 None:intergenic
TCGGAGACGATCGATTTCTC+CGG 0.573929 5_1:-28182650 None:intergenic
CAACATTGTCATCACACAGT+TGG 0.575164 5_1:+28190894 Msa0726790:CDS
AGGAACAAAAGTAAGAAGAA+GGG 0.576712 5_1:+28189910 Msa0726790:intron
ACAGTTGGATTTCCTCGAAG+TGG 0.579381 5_1:+28190909 Msa0726790:CDS
AGCGGCGGTGATGCATCAGC+CGG 0.584373 5_1:-28191104 None:intergenic
TAAATGCACGGTGAAGAAAA+GGG 0.590194 5_1:+28190821 Msa0726790:CDS
GGAACAAAAGTAAGAAGAAG+GGG 0.592127 5_1:+28189911 Msa0726790:intron
CATCGGCTGGAATCTTGTAC+CGG 0.594865 5_1:+28182499 Msa0726790:CDS
ATCTTGAGGATGGCTACAGA+TGG 0.596823 5_1:+28189989 Msa0726790:CDS
GAAGTTGATCATCTTGAGGA+TGG 0.599686 5_1:+28189979 Msa0726790:CDS
TTGAGGATGGCTACAGATGG+AGG 0.606728 5_1:+28189992 Msa0726790:CDS
CGGTTCAACTGAAACGGCAT+CGG 0.607214 5_1:+28182559 Msa0726790:CDS
CTGCCGACGAACTCTTCGGT+AGG 0.613223 5_1:-28182428 None:intergenic
GAGTGAAGTTGATCATCTTG+AGG 0.617670 5_1:+28189975 Msa0726790:CDS
CATCCTCATGAGGCCGCTGG+AGG 0.629985 5_1:+28191062 Msa0726790:CDS
ACCCCGTGGAATGCGCAACA+GGG 0.634896 5_1:+28191163 Msa0726790:CDS
GTACAAGATTCCAGCCGATG+TGG 0.646288 5_1:-28182496 None:intergenic
AAGGGTTGAACGTTCTCATG+AGG 0.649580 5_1:+28190839 Msa0726790:CDS
GTGCACAAATAGTAAATGCA+CGG 0.652957 5_1:+28190809 Msa0726790:CDS
TCAAACACATCATCCTCATG+AGG 0.661604 5_1:+28191052 Msa0726790:CDS
CCTTCATCGGCTAGATCCAG+CGG 0.667147 5_1:-28191122 None:intergenic
AAAAGCGAATACGGCAACCA+CGG 0.672921 5_1:+28189935 Msa0726790:CDS
AGCGATAGGTTCGACCACAT+CGG 0.679999 5_1:+28182482 Msa0726790:intron
AGCGCTGCTCGATCCTCCAG+CGG 0.686245 5_1:-28191075 None:intergenic
TCTTGTACCGGAAACCACCA+AGG 0.687820 5_1:+28182511 Msa0726790:CDS
CTTGGAGATATTGTACCCCG+TGG 0.693708 5_1:+28191149 Msa0726790:CDS
AATTTCTTCAAGCTCCAGCG+AGG 0.699919 5_1:+28182622 Msa0726790:CDS
TCCCTGTTGCGCATTCCACG+GGG 0.706727 5_1:-28191164 None:intergenic
TCATCGGCTAGATCCAGCGG+CGG 0.712483 5_1:-28191119 None:intergenic
CAACTGTGTGATGACAATGT+TGG 0.715256 5_1:-28190893 None:intergenic
TTGACATGCCTGAGAAACAG+TGG 0.733828 5_1:-28191033 None:intergenic
TTGGTCATAAATGCAAACCG+TGG 0.747348 5_1:-28189952 None:intergenic
ACATGCCTGAGAAACAGTGG+TGG 0.787622 5_1:-28191030 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTATTTTTTTATTTTA+TGG + chr5_1:28184524-28184543 Msa0726790:intron 0.0%
!! TATATATATATATATATATA+GGG - chr5_1:28187513-28187532 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr5_1:28187512-28187531 None:intergenic 0.0%
!! AAAATAATATATATATATAT+GGG - chr5_1:28188238-28188257 None:intergenic 0.0%
!! TAAAATAATATATATATATA+TGG - chr5_1:28188239-28188258 None:intergenic 0.0%
!!! TTTTTTTAAGTAAACTTTTT+CGG + chr5_1:28182971-28182990 Msa0726790:intron 10.0%
!! TATTATATAAATAAAGGAAA+AGG + chr5_1:28183570-28183589 Msa0726790:intron 10.0%
!!! TTATTTTATTATTGAGTAAA+TGG + chr5_1:28183687-28183706 Msa0726790:intron 10.0%
!! ATAATTTATAAAAAATCTTG+TGG + chr5_1:28184874-28184893 Msa0726790:intron 10.0%
!!! TCAAAAGTTTTTTTTTTTTT+TGG + chr5_1:28185297-28185316 Msa0726790:intron 10.0%
!!! ATTTTTTTGTTTTTGTTTTA+TGG + chr5_1:28186244-28186263 Msa0726790:intron 10.0%
!!! TATTATTTTATTTTTTCTTC+TGG + chr5_1:28187138-28187157 Msa0726790:intron 10.0%
!! AAATTAAAAAAGAAAAAAGA+AGG - chr5_1:28187452-28187471 None:intergenic 10.0%
!! AATTTATATATAAAATTGTG+TGG + chr5_1:28187467-28187486 Msa0726790:intron 10.0%
!! TTCAAAAAAAAAGTTATTAA+TGG - chr5_1:28188265-28188284 None:intergenic 10.0%
!!! TTCTTTCTAAAATTAAAATT+TGG - chr5_1:28188877-28188896 None:intergenic 10.0%
!!! ATATGTTCTTTTTAATTTTT+CGG + chr5_1:28189155-28189174 Msa0726790:intron 10.0%
!!! AATTCCATTTTATATTCATT+GGG + chr5_1:28182802-28182821 Msa0726790:intron 15.0%
!!! TTTTGTTTTTTGGTATTTTT+GGG + chr5_1:28182906-28182925 Msa0726790:intron 15.0%
!!! TATACAATTTTTAAAAAGTC+AGG + chr5_1:28182934-28182953 Msa0726790:intron 15.0%
!!! ATACAATTTTTAAAAAGTCA+GGG + chr5_1:28182935-28182954 Msa0726790:intron 15.0%
!!! TACAAGATTTTGATTAAAAT+TGG + chr5_1:28183144-28183163 Msa0726790:intron 15.0%
!!! ACAAGATTTTGATTAAAATT+GGG + chr5_1:28183145-28183164 Msa0726790:intron 15.0%
!!! AAATTGGGATATTTTAATTA+AGG + chr5_1:28183160-28183179 Msa0726790:intron 15.0%
!! CAATAATAAAATAAACTTGA+TGG - chr5_1:28183681-28183700 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - chr5_1:28184433-28184452 None:intergenic 15.0%
!!! ATTTTGCTTATATTTTGAAA+TGG + chr5_1:28184433-28184452 Msa0726790:intron 15.0%
!! ATATTAATGCACAAAAAATA+TGG - chr5_1:28184901-28184920 None:intergenic 15.0%
!!! GTTTTTTGTTTTTGATAATA+TGG + chr5_1:28184959-28184978 Msa0726790:intron 15.0%
!!! TTTACTTTTTGATTGAATTT+TGG - chr5_1:28185243-28185262 None:intergenic 15.0%
!! TTAATTCCATTTATATTCAT+CGG + chr5_1:28185922-28185941 Msa0726790:intron 15.0%
!! ATGCATAATATATATATGTA+AGG + chr5_1:28186088-28186107 Msa0726790:intron 15.0%
!!! TTTTTTTCAAGTTACATTTT+CGG + chr5_1:28186171-28186190 Msa0726790:intron 15.0%
!! ATGCAAATCATAAATAATTA+TGG - chr5_1:28186275-28186294 None:intergenic 15.0%
!!! TTTTTCATTTTGATTAAAGT+TGG + chr5_1:28186302-28186321 Msa0726790:intron 15.0%
!! AAAGTTGGATTATTTAATTA+AGG + chr5_1:28186317-28186336 Msa0726790:intron 15.0%
!!! GTTTATACATAATTTTGTTT+TGG + chr5_1:28186718-28186737 Msa0726790:intron 15.0%
!!! ACTAAAAAGACTTTTATTTT+TGG - chr5_1:28186949-28186968 None:intergenic 15.0%
!!! AATAAAAGTCTTTTTAGTTT+TGG + chr5_1:28186951-28186970 Msa0726790:intron 15.0%
!!! ATAAAAGTCTTTTTAGTTTT+GGG + chr5_1:28186952-28186971 Msa0726790:intron 15.0%
!! TCCTATTTATAAGAAAAATT+TGG + chr5_1:28187021-28187040 Msa0726790:intron 15.0%
!! CCTATTTATAAGAAAAATTT+GGG + chr5_1:28187022-28187041 Msa0726790:intron 15.0%
!!! ATTTTTACATTAGATTGAAT+AGG + chr5_1:28187204-28187223 Msa0726790:intron 15.0%
!!! TATATATAATTTGTGTCATA+AGG + chr5_1:28187527-28187546 Msa0726790:intron 15.0%
!!! ATATATAATTTGTGTCATAA+GGG + chr5_1:28187528-28187547 Msa0726790:intron 15.0%
!! TTCTGTTAATAAGTTATTAA+TGG - chr5_1:28188294-28188313 None:intergenic 15.0%
!! ATTAATTGTCAACTAAAAAA+GGG - chr5_1:28188728-28188747 None:intergenic 15.0%
!! TATTAATTGTCAACTAAAAA+AGG - chr5_1:28188729-28188748 None:intergenic 15.0%
!! TTTAGTTGACAATTAATATA+AGG + chr5_1:28188731-28188750 Msa0726790:intron 15.0%
!! TTAGTTGACAATTAATATAA+GGG + chr5_1:28188732-28188751 Msa0726790:intron 15.0%
!!! TTTATAAACCAATTTTCTTT+GGG + chr5_1:28189204-28189223 Msa0726790:intron 15.0%
!!! GAATTCCATTTTATATTCAT+TGG + chr5_1:28182801-28182820 Msa0726790:intron 20.0%
!! AGGAAAAATAAAATCTATCT+CGG - chr5_1:28182885-28182904 None:intergenic 20.0%
!!! ATTTTTCCTCTTTTGTTTTT+TGG + chr5_1:28182896-28182915 Msa0726790:intron 20.0%
!! AAAATACCAAAAAACAAAAG+AGG - chr5_1:28182905-28182924 None:intergenic 20.0%
!!! CTTTTGTTTTTTGGTATTTT+TGG + chr5_1:28182905-28182924 Msa0726790:intron 20.0%
!! ATGAAAGTAAGATAAAAAGT+GGG + chr5_1:28183183-28183202 Msa0726790:intron 20.0%
!! ATATTGCATATTCAAATTTG+TGG - chr5_1:28183243-28183262 None:intergenic 20.0%
!! ATTTGTGTAATACTATGAAT+AGG + chr5_1:28183315-28183334 Msa0726790:intron 20.0%
!! ACTATGAGTATCAATAATTT+CGG + chr5_1:28183467-28183486 Msa0726790:intron 20.0%
!! AAAAAATCGTTTATTGAAGA+GGG - chr5_1:28183537-28183556 None:intergenic 20.0%
!! AAAAAAATCGTTTATTGAAG+AGG - chr5_1:28183538-28183557 None:intergenic 20.0%
!!! ATATTATTTAGTCTTTGTGT+CGG + chr5_1:28183629-28183648 Msa0726790:intron 20.0%
!!! GAGATTTGATATTCAATTTT+GGG - chr5_1:28183949-28183968 None:intergenic 20.0%
!!! AGAGATTTGATATTCAATTT+TGG - chr5_1:28183950-28183969 None:intergenic 20.0%
!! GTGAAATAATAAAGAGTAAA+TGG - chr5_1:28184269-28184288 None:intergenic 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + chr5_1:28184335-28184354 Msa0726790:intron 20.0%
!! GAAAAAAAAAATAAAAGGAG+AGG - chr5_1:28184852-28184871 None:intergenic 20.0%
!! GAAGATTATGATAATTGATA+TGG + chr5_1:28184931-28184950 Msa0726790:intron 20.0%
!! TCAAAAAGTAAAGTATAATG+CGG + chr5_1:28185251-28185270 Msa0726790:intron 20.0%
!!! GTTTTATTCTTAAATTGCTT+CGG + chr5_1:28185329-28185348 Msa0726790:intron 20.0%
!! TAATTCCATTTATATTCATC+GGG + chr5_1:28185923-28185942 Msa0726790:intron 20.0%
!! TAATATATATATGTAAGGTC+TGG + chr5_1:28186093-28186112 Msa0726790:intron 20.0%
!!! TAACCATGACTTTTTTTTTA+TGG - chr5_1:28186136-28186155 None:intergenic 20.0%
!! AAAAAGTCATGGTTAAAAAA+AGG + chr5_1:28186141-28186160 Msa0726790:intron 20.0%
!! CAACAATTTCTTTATTAGAT+CGG + chr5_1:28186696-28186715 Msa0726790:intron 20.0%
!!! ATTTTTCTTATAAATAGGAC+CGG - chr5_1:28187020-28187039 None:intergenic 20.0%
!!! CCCAAATTTTTCTTATAAAT+AGG - chr5_1:28187025-28187044 None:intergenic 20.0%
!! TCAACAAAAATTGATGTATT+TGG + chr5_1:28187045-28187064 Msa0726790:intron 20.0%
!! TCAACAAAACTTAATGTATT+TGG - chr5_1:28187084-28187103 None:intergenic 20.0%
!!! TTCCCTAAAATAATTTTTTG+AGG + chr5_1:28187380-28187399 Msa0726790:intron 20.0%
!!! GTCCTCAAAAAATTATTTTA+GGG - chr5_1:28187385-28187404 None:intergenic 20.0%
!! AAAAAAGAAAAAAGAAGGAA+AGG - chr5_1:28187447-28187466 None:intergenic 20.0%
!! ATGTCAGAAACATAAAAATA+AGG - chr5_1:28187494-28187513 None:intergenic 20.0%
!! GTTAAATGCACAAATATTAA+TGG - chr5_1:28187586-28187605 None:intergenic 20.0%
!!! CAAATGTAGAAACTTTTTAT+TGG - chr5_1:28187647-28187666 None:intergenic 20.0%
!! GAAGATTATGATAATTGATA+TGG + chr5_1:28184931-28184950 Msa0726790:intron 20.0%
!!! TTTGAAAGCATTATGATATA+TGG + chr5_1:28188344-28188363 Msa0726790:intron 20.0%
!! AAGTTAATAAATACACCTTA+AGG - chr5_1:28188645-28188664 None:intergenic 20.0%
!! TTAATTGTCAACTAAAAAAG+GGG - chr5_1:28188727-28188746 None:intergenic 20.0%
!!! GAATTTATTCTTTCTTTTCT+TGG + chr5_1:28188894-28188913 Msa0726790:intron 20.0%
!! ATCTCCAAAAAAAAATAGTA+GGG - chr5_1:28188983-28189002 None:intergenic 20.0%
!! AATCTCCAAAAAAAAATAGT+AGG - chr5_1:28188984-28189003 None:intergenic 20.0%
!!! CTTTATATCCTAATTTGTAT+TGG + chr5_1:28189033-28189052 Msa0726790:intron 20.0%
!!! CTTTATAAACCAATTTTCTT+TGG + chr5_1:28189203-28189222 Msa0726790:intron 20.0%
!!! GGTTTCTAAAAAAAAAAACA+AGG + chr5_1:28189255-28189274 Msa0726790:intron 20.0%
!! ATTTATATCCATTAAGAGAT+AGG - chr5_1:28189504-28189523 None:intergenic 20.0%
!!! TATTGACCAAATTTTACTTA+GGG - chr5_1:28189647-28189666 None:intergenic 20.0%
!!! TTATTGACCAAATTTTACTT+AGG - chr5_1:28189648-28189667 None:intergenic 20.0%
!! ATTGATGGAAGAAAAATTAA+AGG - chr5_1:28190086-28190105 None:intergenic 20.0%
!! GTAACAAAATATTAGCAAAA+GGG + chr5_1:28190140-28190159 Msa0726790:intron 20.0%
!!! ATGAGTTATATGTTCTAAAT+CGG + chr5_1:28190197-28190216 Msa0726790:intron 20.0%
!!! TGTTTTTGTACTTGTATTTA+GGG + chr5_1:28190370-28190389 Msa0726790:intron 20.0%
!!! TTCAAATAACGTATTTTCTA+CGG - chr5_1:28190541-28190560 None:intergenic 20.0%
!! TCCATCAGAATATATAATTA+GGG - chr5_1:28190754-28190773 None:intergenic 20.0%
!! ATCCATCAGAATATATAATT+AGG - chr5_1:28190755-28190774 None:intergenic 20.0%
!! ATGTAGTTATAACAATTGTT+GGG - chr5_1:28190866-28190885 None:intergenic 20.0%
!! TATGTAGTTATAACAATTGT+TGG - chr5_1:28190867-28190886 None:intergenic 20.0%
!! ATTGTTATAACTACATATGA+AGG + chr5_1:28190870-28190889 Msa0726790:CDS 20.0%
! AGAAAAAATTCATCAACTCA+CGG - chr5_1:28182695-28182714 None:intergenic 25.0%
!! TTTCAACTTTCTATTTTGTG+TGG + chr5_1:28182723-28182742 Msa0726790:intron 25.0%
!! TTCAACTTTCTATTTTGTGT+GGG + chr5_1:28182724-28182743 Msa0726790:intron 25.0%
!! CATTTTATATTCATTGGGAT+CGG + chr5_1:28182807-28182826 Msa0726790:intron 25.0%
! GATGAAAGTAAGATAAAAAG+TGG + chr5_1:28183182-28183201 Msa0726790:intron 25.0%
! TGAAAGTAAGATAAAAAGTG+GGG + chr5_1:28183184-28183203 Msa0726790:intron 25.0%
! GAAATCTCCTCTTTAATAAA+CGG + chr5_1:28183594-28183613 Msa0726790:intron 25.0%
!!! GATATTGATTTTTCAGTTCA+AGG - chr5_1:28183927-28183946 None:intergenic 25.0%
! ACTACAATGAAAGTAGAAAA+TGG - chr5_1:28184063-28184082 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG + chr5_1:28184360-28184379 Msa0726790:intron 25.0%
!!! TGCTTATATTTTGAAATGGA+AGG + chr5_1:28184437-28184456 Msa0726790:intron 25.0%
!!! CAAATACAGCTTTTTAGTTT+TGG + chr5_1:28184464-28184483 Msa0726790:intron 25.0%
! AAAATAAAAAAAGCTGCAAG+TGG - chr5_1:28184508-28184527 None:intergenic 25.0%
! TGTGTAAAAATGACTAAATG+AGG - chr5_1:28184582-28184601 None:intergenic 25.0%
! GCTCATAATTATTATGTACT+AGG + chr5_1:28184721-28184740 Msa0726790:intron 25.0%
!! AAACACGCAAACATTATTTT+AGG - chr5_1:28184813-28184832 None:intergenic 25.0%
! GTAAGCATTATGATATACTA+TGG + chr5_1:28184994-28185013 Msa0726790:intron 25.0%
! ATATGAGCCACATTATATTT+GGG - chr5_1:28185054-28185073 None:intergenic 25.0%
! AATATGAGCCACATTATATT+TGG - chr5_1:28185055-28185074 None:intergenic 25.0%
!! AGTTGTGATATCTGATTTTA+AGG - chr5_1:28185414-28185433 None:intergenic 25.0%
! GTAATTAACATGAAATTGTG+AGG + chr5_1:28185797-28185816 Msa0726790:intron 25.0%
! TCTATGATTATGTTCTGTTT+GGG - chr5_1:28186000-28186019 None:intergenic 25.0%
! ATCTATGATTATGTTCTGTT+TGG - chr5_1:28186001-28186020 None:intergenic 25.0%
! CTACCATAAAAAAAAAGTCA+TGG + chr5_1:28186130-28186149 Msa0726790:intron 25.0%
! ATGAAATCCAGATAAAAAGT+AGG + chr5_1:28186340-28186359 Msa0726790:intron 25.0%
! CAAATGCATTTATATGATTG+TGG + chr5_1:28186510-28186529 Msa0726790:intron 25.0%
! TGAATATGCAAGTGAAAATA+AGG - chr5_1:28186565-28186584 None:intergenic 25.0%
! ATAAAGAAATTGTTGATCCT+TGG - chr5_1:28186691-28186710 None:intergenic 25.0%
!! CTTTCTTTTGTAAATAAGAC+CGG + chr5_1:28187109-28187128 Msa0726790:intron 25.0%
! AAATAAAATAATACTCCCTC+CGG - chr5_1:28187131-28187150 None:intergenic 25.0%
! GCTCATAATTATTATGTACT+AGG + chr5_1:28184721-28184740 Msa0726790:intron 25.0%
!! GGTCCTCAAAAAATTATTTT+AGG - chr5_1:28187386-28187405 None:intergenic 25.0%
!!! AACACGCAAACATTATTTTA+GGG - chr5_1:28184812-28184831 None:intergenic 25.0%
!! AAACACGCAAACATTATTTT+AGG - chr5_1:28184813-28184832 None:intergenic 25.0%
!!! GTTTGCGTGTTTTAATTTTA+AGG + chr5_1:28187416-28187435 Msa0726790:intron 25.0%
! ATAAAAGACACCTTCATAAA+AGG - chr5_1:28187769-28187788 None:intergenic 25.0%
!! ACACCTTCTAAAAAATAAGT+GGG + chr5_1:28188050-28188069 Msa0726790:intron 25.0%
!! ACTCCTTCTAAAAAATAAGT+GGG - chr5_1:28188115-28188134 None:intergenic 25.0%
! ACACCTTAATAAAAACTAGT+GGG + chr5_1:28188197-28188216 Msa0726790:intron 25.0%
! AGAAATAATGTTGAGTCTAT+TGG + chr5_1:28188379-28188398 Msa0726790:intron 25.0%
!!! ATGTGGCTCATATTTTTATA+TGG + chr5_1:28188414-28188433 Msa0726790:intron 25.0%
!!! TGTGGCTCATATTTTTATAT+GGG + chr5_1:28188415-28188434 Msa0726790:intron 25.0%
! TGACAATTAATATAAGGGAT+AGG + chr5_1:28188737-28188756 Msa0726790:intron 25.0%
!!! TCAAATTTAATTTGACACCT+TGG - chr5_1:28188774-28188793 None:intergenic 25.0%
!!! ATTAAAGTGGATTAATGGTT+AGG - chr5_1:28188805-28188824 None:intergenic 25.0%
!! TCATTGTATTTTGCTTCAAT+AGG + chr5_1:28188934-28188953 Msa0726790:intron 25.0%
!!! TTCTCCCTACTATTTTTTTT+TGG + chr5_1:28188976-28188995 Msa0726790:intron 25.0%
!! GAAAATTGGTTTATAAAGAG+CGG - chr5_1:28189201-28189220 None:intergenic 25.0%
! TAGATTAACCCAAAGAAAAT+TGG - chr5_1:28189215-28189234 None:intergenic 25.0%
! ATTCTCTGATGGTATTATTA+TGG - chr5_1:28189305-28189324 None:intergenic 25.0%
!! TAATACCATCAGAGAATTTT+TGG + chr5_1:28189308-28189327 Msa0726790:intron 25.0%
! ATTTACCAAAAATTCTCTGA+TGG - chr5_1:28189316-28189335 None:intergenic 25.0%
! TCGGATTAAAGTTGAATTAA+CGG + chr5_1:28189431-28189450 Msa0726790:intron 25.0%
! TTGAATTAACGGTTATGATT+TGG + chr5_1:28189442-28189461 Msa0726790:intron 25.0%
!!! TCAAATTTAATTTGACACCA+TGG + chr5_1:28189467-28189486 Msa0726790:intron 25.0%
! GATTATCCTAACTAAAATTG+AGG + chr5_1:28189550-28189569 Msa0726790:intron 25.0%
! ACACAGAAATTTCTTAAACT+TGG + chr5_1:28189791-28189810 Msa0726790:intron 25.0%
! TTAAAAATAGTTCATTCCCT+AGG + chr5_1:28190034-28190053 Msa0726790:CDS 25.0%
!!! ATGGAAAGAATTTTGATTGA+TGG - chr5_1:28190101-28190120 None:intergenic 25.0%
!! TGCTAATATTTTGTTACGTA+GGG - chr5_1:28190137-28190156 None:intergenic 25.0%
!! TTGCTAATATTTTGTTACGT+AGG - chr5_1:28190138-28190157 None:intergenic 25.0%
! CGTAACAAAATATTAGCAAA+AGG + chr5_1:28190139-28190158 Msa0726790:intron 25.0%
! CCTTAAGACAATGAATTTAT+GGG - chr5_1:28190262-28190281 None:intergenic 25.0%
! ACCTTAAGACAATGAATTTA+TGG - chr5_1:28190263-28190282 None:intergenic 25.0%
!! AATTCATTGTCTTAAGGTTT+TGG + chr5_1:28190265-28190284 Msa0726790:intron 25.0%
!! ATTCATTGTCTTAAGGTTTT+GGG + chr5_1:28190266-28190285 Msa0726790:intron 25.0%
!! ATTTGGTTCAAATTTGTGTT+GGG - chr5_1:28190342-28190361 None:intergenic 25.0%
!! TATTTGGTTCAAATTTGTGT+TGG - chr5_1:28190343-28190362 None:intergenic 25.0%
! ACAAAAACACTACAAGTATT+TGG - chr5_1:28190359-28190378 None:intergenic 25.0%
!!! GTGTTTTTGTACTTGTATTT+AGG + chr5_1:28190369-28190388 Msa0726790:intron 25.0%
! ATTTCAATTCATTCTCTTCA+AGG + chr5_1:28190426-28190445 Msa0726790:intron 25.0%
! TTTCAATTCATTCTCTTCAA+GGG + chr5_1:28190427-28190446 Msa0726790:intron 25.0%
! GAAAATACGTTATTTGAAGA+TGG + chr5_1:28190543-28190562 Msa0726790:intron 25.0%
! AGAGGAAAAAACTTATTCAA+TGG + chr5_1:28190605-28190624 Msa0726790:intron 25.0%
!!! ATATTAATTTGTCTTGTTGC+AGG + chr5_1:28190775-28190794 Msa0726790:intron 25.0%
! TCAACTTTCTATTTTGTGTG+GGG + chr5_1:28182725-28182744 Msa0726790:intron 30.0%
GTAATTAACGTGAAATTGTG+AGG + chr5_1:28182755-28182774 Msa0726790:intron 30.0%
CGATCCCAATGAATATAAAA+TGG - chr5_1:28182809-28182828 None:intergenic 30.0%
GAAGAAGATTCCTAAATGTA+CGG - chr5_1:28182846-28182865 None:intergenic 30.0%
AAAGCAGAAAGAGATTTAGA+TGG - chr5_1:28183058-28183077 None:intergenic 30.0%
AAACCTTGGAAAGTGAAATT+TGG - chr5_1:28183382-28183401 None:intergenic 30.0%
CATTTCACCGTTTATTAAAG+AGG - chr5_1:28183604-28183623 None:intergenic 30.0%
GTCAGAAACTAAACTGATAA+CGG - chr5_1:28183799-28183818 None:intergenic 30.0%
AGGAATTTGAGGATTGAATT+CGG - chr5_1:28183978-28183997 None:intergenic 30.0%
! GTTTGAGATTTAGGAATTTG+AGG - chr5_1:28183989-28184008 None:intergenic 30.0%
AAACCCCTAAGATTCAATTT+GGG + chr5_1:28184005-28184024 Msa0726790:intron 30.0%
! ACAAATGTTTTGTGCTAACA+AGG - chr5_1:28184106-28184125 None:intergenic 30.0%
! GTCATAAAAGTCTCTGTTTT+AGG - chr5_1:28184214-28184233 None:intergenic 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - chr5_1:28184322-28184341 None:intergenic 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - chr5_1:28184323-28184342 None:intergenic 30.0%
GATGTATGTGGTTCATAATA+TGG + chr5_1:28184372-28184391 Msa0726790:intron 30.0%
TTTGAACTTTAAACTGCAAG+TGG - chr5_1:28184553-28184572 None:intergenic 30.0%
! GCAGAAATAATACTGTCTTT+TGG + chr5_1:28185028-28185047 Msa0726790:intron 30.0%
TCTCCACTTATACTTAAGAA+GGG + chr5_1:28185206-28185225 Msa0726790:intron 30.0%
ACATAGAAATTTCCTAAACC+TGG + chr5_1:28185387-28185406 Msa0726790:intron 30.0%
AAATCATCATCATCAACTCA+CGG - chr5_1:28185734-28185753 None:intergenic 30.0%
! TTCAACCTTTCTATTTTCTG+CGG + chr5_1:28185765-28185784 Msa0726790:intron 30.0%
CGATCTAGATATGATTGATA+TGG - chr5_1:28185851-28185870 None:intergenic 30.0%
GAAGAAGATTCGTAATTGTA+CGG - chr5_1:28185978-28185997 None:intergenic 30.0%
!!! GACTTTTTTTTTATGGTAGC+CGG - chr5_1:28186129-28186148 None:intergenic 30.0%
!!! TTCTCATCCTACTTTTTATC+TGG - chr5_1:28186350-28186369 None:intergenic 30.0%
GATAAAAAGTAGGATGAGAA+AGG + chr5_1:28186350-28186369 Msa0726790:intron 30.0%
AATGTTGCAAGTTCAAATTG+AGG - chr5_1:28186400-28186419 None:intergenic 30.0%
TGATTGTGGAATATTGTGAT+AGG + chr5_1:28186524-28186543 Msa0726790:intron 30.0%
TCTATGATTTCAATCATCCA+AGG + chr5_1:28186671-28186690 Msa0726790:intron 30.0%
GAGCATAAAGTGCATATTAA+TGG - chr5_1:28187281-28187300 None:intergenic 30.0%
!!! TGCGTGTTTTAATTTTAAGG+CGG + chr5_1:28187419-28187438 Msa0726790:intron 30.0%
!! ATTCATTAACTTGTGCTTTG+AGG + chr5_1:28187667-28187686 Msa0726790:intron 30.0%
!! TTCATTAACTTGTGCTTTGA+GGG + chr5_1:28187668-28187687 Msa0726790:intron 30.0%
! ATAGAAGACACCTTTTATGA+AGG + chr5_1:28187756-28187775 Msa0726790:intron 30.0%
!! ACACCAACTTACTTTTATGA+AGG + chr5_1:28187818-28187837 Msa0726790:intron 30.0%
ACACCTTCATAAAAGTAAGT+TGG - chr5_1:28187824-28187843 None:intergenic 30.0%
AAAGTGAAAATCACACCTTA+AGG + chr5_1:28187866-28187885 Msa0726790:intron 30.0%
! TTTTAACAAGTCACACCTTA+AGG - chr5_1:28187884-28187903 None:intergenic 30.0%
AAGTAGTTAAATACACCCTA+AGG - chr5_1:28188008-28188027 None:intergenic 30.0%
! CACACCTTCTAAAAAATAAG+TGG + chr5_1:28188049-28188068 Msa0726790:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG - chr5_1:28188109-28188128 None:intergenic 30.0%
GTATTCTAGCAAATGCTTAT+AGG + chr5_1:28188074-28188093 Msa0726790:intron 30.0%
!!! ACACCCACTTATTTTTTAGA+AGG + chr5_1:28188109-28188128 Msa0726790:intron 30.0%
! CACTCCTTCTAAAAAATAAG+TGG - chr5_1:28188116-28188135 None:intergenic 30.0%
AAGTTGTTAAATACACCTTG+AGG - chr5_1:28188154-28188173 None:intergenic 30.0%
CACACCTTAATAAAAACTAG+TGG + chr5_1:28188196-28188215 Msa0726790:intron 30.0%
!!! ACACCCACTAGTTTTTATTA+AGG - chr5_1:28188203-28188222 None:intergenic 30.0%
! ATATATATATGGGGTTTGCT+AGG - chr5_1:28188228-28188247 None:intergenic 30.0%
ATGAGCCACATTATATAGTT+GGG - chr5_1:28188405-28188424 None:intergenic 30.0%
TATGAGCCACATTATATAGT+TGG - chr5_1:28188406-28188425 None:intergenic 30.0%
GCAAGTGAATAACTAAAAAG+TGG - chr5_1:28188513-28188532 None:intergenic 30.0%
! TACTCCTTCTAAAAAGTAAG+TGG + chr5_1:28188538-28188557 Msa0726790:intron 30.0%
! ACTCCTTCTAAAAAGTAAGT+GGG + chr5_1:28188539-28188558 Msa0726790:intron 30.0%
ACCTTCTAACAAAAACAAGT+GGG - chr5_1:28188604-28188623 None:intergenic 30.0%
TTATAGCAACATACACCTTA+AGG + chr5_1:28188627-28188646 Msa0726790:intron 30.0%
GAAGCAAAATACAATGAAAG+TGG - chr5_1:28188931-28188950 None:intergenic 30.0%
AATAGTAGGGAGAAATCAAA+TGG - chr5_1:28188970-28188989 None:intergenic 30.0%
AAGAGTAGCCAATACAAATT+AGG - chr5_1:28189044-28189063 None:intergenic 30.0%
! AATGAATTGATGATAGACGT+CGG + chr5_1:28189412-28189431 Msa0726790:intron 30.0%
CATTTGATCCTATCTCTTAA+TGG + chr5_1:28189493-28189512 Msa0726790:intron 30.0%
!!! TAAGAGCCTCAATTTTAGTT+AGG - chr5_1:28189559-28189578 None:intergenic 30.0%
CTCCTCTAATACTTAAAGAA+CGG + chr5_1:28189621-28189640 Msa0726790:intron 30.0%
GCATGTACATATTCTACATT+GGG - chr5_1:28189712-28189731 None:intergenic 30.0%
AGCATGTACATATTCTACAT+TGG - chr5_1:28189713-28189732 None:intergenic 30.0%
!! ATGCTTCCTTTTGTTTGATA+TGG + chr5_1:28189728-28189747 Msa0726790:intron 30.0%
!!! TTGTCAGTGACATTTTTTGT+AGG + chr5_1:28189890-28189909 Msa0726790:intron 30.0%
TAGGAACAAAAGTAAGAAGA+AGG + chr5_1:28189909-28189928 Msa0726790:intron 30.0%
AGGAACAAAAGTAAGAAGAA+GGG + chr5_1:28189910-28189929 Msa0726790:intron 30.0%
TTCTAAATCGGATAGAAAAG+TGG + chr5_1:28190209-28190228 Msa0726790:intron 30.0%
CCCATAAATTCATTGTCTTA+AGG + chr5_1:28190259-28190278 Msa0726790:intron 30.0%
CAACTCTCATCATAAGAAAT+GGG - chr5_1:28190473-28190492 None:intergenic 30.0%
!!! AAGTTTTTTCCTCTTGAGTT+GGG - chr5_1:28190599-28190618 None:intergenic 30.0%
!!! TAAGTTTTTTCCTCTTGAGT+TGG - chr5_1:28190600-28190619 None:intergenic 30.0%
!!! TTGCTTTTTCCAATAAACGT+TGG + chr5_1:28190660-28190679 Msa0726790:intron 30.0%
GAAATGTAACCAACGTTTAT+TGG - chr5_1:28190672-28190691 None:intergenic 30.0%
! TTGTACCAGTAACTGATTTA+TGG + chr5_1:28190702-28190721 Msa0726790:intron 30.0%
GCCCTAATTATATATTCTGA+TGG + chr5_1:28190750-28190769 Msa0726790:intron 30.0%
! AGTCATGAATCTTCTTTTAC+TGG + chr5_1:28190939-28190958 Msa0726790:CDS 30.0%
!! TAATAGAATTGAGGCATTGT+AGG - chr5_1:28190975-28190994 None:intergenic 30.0%
TGAACAGGATAATAGAATTG+AGG - chr5_1:28190984-28191003 None:intergenic 30.0%
! TCATCAACTCACGGTATTTT+CGG - chr5_1:28182686-28182705 None:intergenic 35.0%
TGAAATTGTGAGGACGAAAA+TGG + chr5_1:28182765-28182784 Msa0726790:intron 35.0%
AAATCCATGTCCGTACATTT+AGG + chr5_1:28182833-28182852 Msa0726790:intron 35.0%
TCTCGGATTATGTTCTGTTT+GGG - chr5_1:28182868-28182887 None:intergenic 35.0%
ATCTCGGATTATGTTCTGTT+TGG - chr5_1:28182869-28182888 None:intergenic 35.0%
AGATAAAAAGTGGGGTGAAA+AGG + chr5_1:28183192-28183211 Msa0726790:intron 35.0%
GATAAAAAGTGGGGTGAAAA+GGG + chr5_1:28183193-28183212 Msa0726790:intron 35.0%
CATATTCAAATTTGTGGCAG+TGG - chr5_1:28183237-28183256 None:intergenic 35.0%
!! GTGAAATTTGGTAGTGAAGA+TGG - chr5_1:28183370-28183389 None:intergenic 35.0%
CTACCAAATTTCACTTTCCA+AGG + chr5_1:28183376-28183395 Msa0726790:intron 35.0%
TCACTTTCCAAGGTTTGATT+TGG + chr5_1:28183386-28183405 Msa0726790:intron 35.0%
GGAATTTGAGGATTGAATTC+GGG - chr5_1:28183977-28183996 None:intergenic 35.0%
! ATCTTAGGGGTTTGAGATTT+AGG - chr5_1:28183998-28184017 None:intergenic 35.0%
CAAACCCCTAAGATTCAATT+TGG + chr5_1:28184004-28184023 Msa0726790:intron 35.0%
AACCCCTAAGATTCAATTTG+GGG + chr5_1:28184006-28184025 Msa0726790:intron 35.0%
TACCCCCAAATTGAATCTTA+GGG - chr5_1:28184012-28184031 None:intergenic 35.0%
ATACCCCCAAATTGAATCTT+AGG - chr5_1:28184013-28184032 None:intergenic 35.0%
!!! GGGTATTGATTTTCGATCTA+GGG + chr5_1:28184027-28184046 Msa0726790:intron 35.0%
TAGTGTATTGCATACTAGCT+AGG - chr5_1:28184747-28184766 None:intergenic 35.0%
AGGAAAAGAAGCAATATGTC+TGG - chr5_1:28184793-28184812 None:intergenic 35.0%
! GTTTGCGTGTTTTCATTGTA+AGG + chr5_1:28184821-28184840 Msa0726790:intron 35.0%
! CTTTTGGCCCAAATATAATG+TGG + chr5_1:28185044-28185063 Msa0726790:intron 35.0%
!! GATTAGCCTAGCTAAAATTG+AGG + chr5_1:28185114-28185133 Msa0726790:intron 35.0%
CTCTCCACTTATACTTAAGA+AGG + chr5_1:28185205-28185224 Msa0726790:intron 35.0%
CTCCACTTATACTTAAGAAG+GGG + chr5_1:28185207-28185226 Msa0726790:intron 35.0%
AACCCCTTCTTAAGTATAAG+TGG - chr5_1:28185212-28185231 None:intergenic 35.0%
! AGAAGACATGTTTGAAATCC+TGG - chr5_1:28185356-28185375 None:intergenic 35.0%
!! TGATTTTAAGGACCAGGTTT+AGG - chr5_1:28185402-28185421 None:intergenic 35.0%
!! GATATCTGATTTTAAGGACC+AGG - chr5_1:28185408-28185427 None:intergenic 35.0%
TTACTTGTAAGAAAATGCCG+AGG - chr5_1:28185630-28185649 None:intergenic 35.0%
! TCAACCTTTCTATTTTCTGC+GGG + chr5_1:28185766-28185785 Msa0726790:intron 35.0%
TGAAATTGTGAGGACGAAAA+TGG + chr5_1:28182765-28182784 Msa0726790:intron 35.0%
! ATCTAGATCGAATCAAGTTG+AGG + chr5_1:28185861-28185880 Msa0726790:intron 35.0%
CCATTTATATTCATCGGGAT+CGG + chr5_1:28185928-28185947 Msa0726790:intron 35.0%
! TGAGCTTAACTCAGTTGATA+AGG + chr5_1:28186062-28186081 Msa0726790:intron 35.0%
!! AATTCGTGAGTGTTGAAACT+TGG - chr5_1:28186604-28186623 None:intergenic 35.0%
! AGTCTTAAGCTTTTACCACT+GGG - chr5_1:28186630-28186649 None:intergenic 35.0%
! AAGTCTTAAGCTTTTACCAC+TGG - chr5_1:28186631-28186650 None:intergenic 35.0%
CGATTGAATCCTCTAATGAA+TGG + chr5_1:28186744-28186763 Msa0726790:intron 35.0%
CCAATTTCACCATTCATTAG+AGG - chr5_1:28186756-28186775 None:intergenic 35.0%
CCTCTAATGAATGGTGAAAT+TGG + chr5_1:28186753-28186772 Msa0726790:intron 35.0%
!! AATTGGTTCCAGAGATTTTG+TGG + chr5_1:28186770-28186789 Msa0726790:intron 35.0%
CAAAAAGACCACAAAATCTC+TGG - chr5_1:28186781-28186800 None:intergenic 35.0%
! AGATTTTGTGGTCTTTTTGC+AGG + chr5_1:28186782-28186801 Msa0726790:intron 35.0%
TTCTTATAAATAGGACCGGA+GGG - chr5_1:28187016-28187035 None:intergenic 35.0%
TTTCTTATAAATAGGACCGG+AGG - chr5_1:28187017-28187036 None:intergenic 35.0%
! TCTTTTGTAAATAAGACCGG+AGG + chr5_1:28187112-28187131 Msa0726790:intron 35.0%
! CTTTTGTAAATAAGACCGGA+GGG + chr5_1:28187113-28187132 Msa0726790:intron 35.0%
GTTTGAACTTAATCTGCAAG+TGG - chr5_1:28187167-28187186 None:intergenic 35.0%
GTTTCTACTCTCTACTTTCT+TGG + chr5_1:28187232-28187251 Msa0726790:intron 35.0%
TGTATTGCATAGTACTAGCT+AGG - chr5_1:28187328-28187347 None:intergenic 35.0%
!!! GCGTGTTTTAATTTTAAGGC+GGG + chr5_1:28187420-28187439 Msa0726790:intron 35.0%
!!! CGTGTTTTAATTTTAAGGCG+GGG + chr5_1:28187421-28187440 Msa0726790:intron 35.0%
!!! AACACCCACTAGTTTTTATG+TGG + chr5_1:28187962-28187981 Msa0726790:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr5_1:28187963-28187982 Msa0726790:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr5_1:28188687-28188706 None:intergenic 35.0%
! TTTTAGCAAGCTACACCTTA+GGG + chr5_1:28187990-28188009 Msa0726790:intron 35.0%
! TTTTAGCAACATTCACCTCA+AGG + chr5_1:28188136-28188155 Msa0726790:intron 35.0%
!! GACTCAACATTATTTCTGCA+CGG - chr5_1:28188376-28188395 None:intergenic 35.0%
ATTGGCCCAACTATATAATG+TGG + chr5_1:28188397-28188416 Msa0726790:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr5_1:28187963-28187982 Msa0726790:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr5_1:28188687-28188706 None:intergenic 35.0%
! TTTTAGCAAAGCTACACCTT+AGG + chr5_1:28188477-28188496 Msa0726790:intron 35.0%
TTTAGCAAAGCTACACCTTA+GGG + chr5_1:28188478-28188497 Msa0726790:intron 35.0%
AAGTGGTTAAATACACCCTA+AGG - chr5_1:28188496-28188515 None:intergenic 35.0%
!!! ACACCCACTTACTTTTTAGA+AGG - chr5_1:28188545-28188564 None:intergenic 35.0%
TGTTCTAGCAAATCCTATAG+GGG - chr5_1:28188579-28188598 None:intergenic 35.0%
GTGTTCTAGCAAATCCTATA+GGG - chr5_1:28188580-28188599 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG - chr5_1:28188581-28188600 None:intergenic 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG + chr5_1:28188600-28188619 Msa0726790:intron 35.0%
CACCTTCTAACAAAAACAAG+TGG - chr5_1:28188605-28188624 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr5_1:28188687-28188706 Msa0726790:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr5_1:28187963-28187982 None:intergenic 35.0%
! GTGGATTAATGGTTAGGATT+TGG - chr5_1:28188799-28188818 None:intergenic 35.0%
!! GTCGGATTAAAGTGGATTAA+TGG - chr5_1:28188810-28188829 None:intergenic 35.0%
TTGGCTACTCTTTCATTTGT+TGG + chr5_1:28189052-28189071 Msa0726790:intron 35.0%
AGCTGCTAATATACTTGCAT+CGG + chr5_1:28189096-28189115 Msa0726790:intron 35.0%
GAAGACATGTTTGAAAATGC+TGG - chr5_1:28189755-28189774 None:intergenic 35.0%
! ATTTTATAGCTGCGTATGCT+TGG + chr5_1:28189848-28189867 Msa0726790:intron 35.0%
GGAACAAAAGTAAGAAGAAG+GGG + chr5_1:28189911-28189930 Msa0726790:intron 35.0%
AAGATGATCAACTTCACTCT+TGG - chr5_1:28189974-28189993 None:intergenic 35.0%
GAGAAGTAGTTGTAAACCTA+GGG - chr5_1:28190053-28190072 None:intergenic 35.0%
TGAGAAGTAGTTGTAAACCT+AGG - chr5_1:28190054-28190073 None:intergenic 35.0%
! AGCAAAAGGGTACATCTATT+AGG + chr5_1:28190153-28190172 Msa0726790:intron 35.0%
TAAATCGGATAGAAAAGTGG+AGG + chr5_1:28190212-28190231 Msa0726790:intron 35.0%
!!! TAAGGTTTTGGGTAAGAATG+TGG + chr5_1:28190277-28190296 Msa0726790:intron 35.0%
!!! GGTTTTTTTCCACCTAGTTT+TGG + chr5_1:28190391-28190410 Msa0726790:intron 35.0%
ATAGTTGCTACACCAAAACT+AGG - chr5_1:28190406-28190425 None:intergenic 35.0%
CTCTTCAAGGGTTTCATAAT+TGG + chr5_1:28190439-28190458 Msa0726790:intron 35.0%
GCAACTCTCATCATAAGAAA+TGG - chr5_1:28190474-28190493 None:intergenic 35.0%
TTTCTTATGATGAGAGTTGC+TGG + chr5_1:28190474-28190493 Msa0726790:intron 35.0%
AAAAGCAACCCCAAAGATTT+GGG - chr5_1:28190648-28190667 None:intergenic 35.0%
AAAAAGCAACCCCAAAGATT+TGG - chr5_1:28190649-28190668 None:intergenic 35.0%
CTCATCCATAAATCAGTTAC+TGG - chr5_1:28190710-28190729 None:intergenic 35.0%
GTGCACAAATAGTAAATGCA+CGG + chr5_1:28190809-28190828 Msa0726790:CDS 35.0%
TAAATGCACGGTGAAGAAAA+GGG + chr5_1:28190821-28190840 Msa0726790:CDS 35.0%
! AGTTTATCCTTGGTGGTTTC+CGG - chr5_1:28182521-28182540 None:intergenic 40.0%
TTGCAACAGTTTATCCTTGG+TGG - chr5_1:28182528-28182547 None:intergenic 40.0%
CAAGGATAAACTGTTGCAAC+CGG + chr5_1:28182529-28182548 Msa0726790:CDS 40.0%
! TCAAACCGGTTCAACTGAAA+CGG + chr5_1:28182553-28182572 Msa0726790:CDS 40.0%
! TATTTTCGGCGGTTTCTCAT+CGG - chr5_1:28182672-28182691 None:intergenic 40.0%
GATTCCTAAATGTACGGACA+TGG - chr5_1:28182840-28182859 None:intergenic 40.0%
ACAATAACAGTGGTACTCGT+GGG - chr5_1:28183013-28183032 None:intergenic 40.0%
TATTCTCGCCACAATAACAG+TGG - chr5_1:28183023-28183042 None:intergenic 40.0%
!! CTTTCCAAGGTTTGATTTGG+TGG + chr5_1:28183389-28183408 Msa0726790:intron 40.0%
GTGTGCTCTCTTTAGATCTT+AGG + chr5_1:28183430-28183449 Msa0726790:intron 40.0%
! GTCACTTTAGTCTCTGACTT+TGG + chr5_1:28183709-28183728 Msa0726790:intron 40.0%
TGATGAGACGACAAATGTCT+TGG + chr5_1:28183838-28183857 Msa0726790:intron 40.0%
GATGAGACGACAAATGTCTT+GGG + chr5_1:28183839-28183858 Msa0726790:intron 40.0%
ACAAATGTCTTGGGCTAACA+AGG + chr5_1:28183848-28183867 Msa0726790:intron 40.0%
ACCCCTAAGATTCAATTTGG+GGG + chr5_1:28184007-28184026 Msa0726790:intron 40.0%
ACCCCCAAATTGAATCTTAG+GGG - chr5_1:28184011-28184030 None:intergenic 40.0%
!!! GGGGTATTGATTTTCGATCT+AGG + chr5_1:28184026-28184045 Msa0726790:intron 40.0%
TTAATGACAGTGCTATCCTG+TGG - chr5_1:28184689-28184708 None:intergenic 40.0%
! CGTGTTTTCATTGTAAGGCT+GGG + chr5_1:28184826-28184845 Msa0726790:intron 40.0%
!!! TGAGAGCCTCAATTTTAGCT+AGG - chr5_1:28185123-28185142 None:intergenic 40.0%
TTCTTAAATTGCTTCGGACC+AGG + chr5_1:28185335-28185354 Msa0726790:intron 40.0%
!! TGAATCAAACCGGTTTGAAC+CGG - chr5_1:28185596-28185615 None:intergenic 40.0%
! CAACCTTTCTATTTTCTGCG+GGG + chr5_1:28185767-28185786 Msa0726790:intron 40.0%
CCGATCCCGATGAATATAAA+TGG - chr5_1:28185931-28185950 None:intergenic 40.0%
ATACAGTCTCCCCACAATAA+CGG - chr5_1:28186226-28186245 None:intergenic 40.0%
! TTTTGTTACAAGCCACCCTT+TGG - chr5_1:28187914-28187933 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG - chr5_1:28188686-28188705 None:intergenic 40.0%
!! GTTTTAGCAAGCTACACCTT+AGG + chr5_1:28187989-28188008 Msa0726790:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr5_1:28188449-28188468 Msa0726790:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr5_1:28188686-28188705 None:intergenic 40.0%
! AAATCCTATAGGGGTTTGCT+GGG - chr5_1:28188570-28188589 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG + chr5_1:28188686-28188705 Msa0726790:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr5_1:28188449-28188468 None:intergenic 40.0%
GATAGGATCAAATGACACCA+AGG + chr5_1:28188754-28188773 Msa0726790:intron 40.0%
TAAGACTTGATGAGAGACGT+CGG - chr5_1:28188828-28188847 None:intergenic 40.0%
GCTGCTAATATACTTGCATC+GGG + chr5_1:28189097-28189116 Msa0726790:intron 40.0%
GATAGGATCAAATGACACCA+TGG - chr5_1:28188754-28188773 None:intergenic 40.0%
GGCCGTTCTTTAAGTATTAG+AGG - chr5_1:28189626-28189645 None:intergenic 40.0%
GAACGGCCCTAAGTAAAATT+TGG + chr5_1:28189638-28189657 Msa0726790:intron 40.0%
GCTGGTCCATATCAAACAAA+AGG - chr5_1:28189737-28189756 None:intergenic 40.0%
TTGGTCATAAATGCAAACCG+TGG - chr5_1:28189955-28189974 None:intergenic 40.0%
! GAGTGAAGTTGATCATCTTG+AGG + chr5_1:28189975-28189994 Msa0726790:CDS 40.0%
! GAAGTTGATCATCTTGAGGA+TGG + chr5_1:28189979-28189998 Msa0726790:CDS 40.0%
! GTAGGGAGTATGCATAATCA+TGG - chr5_1:28190120-28190139 None:intergenic 40.0%
TTTGTGTTGGGTCATCATGA+GGG - chr5_1:28190330-28190349 None:intergenic 40.0%
ATTTGTGTTGGGTCATCATG+AGG - chr5_1:28190331-28190350 None:intergenic 40.0%
ATGAGAGTTGCTGGTGTATT+GGG + chr5_1:28190483-28190502 Msa0726790:intron 40.0%
TGCTATTAACCCAACTCAAG+AGG + chr5_1:28190587-28190606 Msa0726790:intron 40.0%
! CAAAGATTTGGGACCAAAAG+CGG - chr5_1:28190637-28190656 None:intergenic 40.0%
! GCTTTTGGTCCCAAATCTTT+GGG + chr5_1:28190636-28190655 Msa0726790:intron 40.0%
! CTTTTGGTCCCAAATCTTTG+GGG + chr5_1:28190637-28190656 Msa0726790:intron 40.0%
GTAAATGCACGGTGAAGAAA+AGG + chr5_1:28190820-28190839 Msa0726790:CDS 40.0%
CAACTGTGTGATGACAATGT+TGG - chr5_1:28190896-28190915 None:intergenic 40.0%
CAACATTGTCATCACACAGT+TGG + chr5_1:28190894-28190913 Msa0726790:CDS 40.0%
TGACTAATGATTCCACTTCG+AGG - chr5_1:28190924-28190943 None:intergenic 40.0%
AACTCTGCAGGTAATTGAAC+AGG - chr5_1:28190999-28191018 None:intergenic 40.0%
TCAAACACATCATCCTCATG+AGG + chr5_1:28191052-28191071 Msa0726790:CDS 40.0%
ATCTCCAAGTAGTCCTTCAT+CGG - chr5_1:28191138-28191157 None:intergenic 40.0%
!! ACGTTGATGATTCCAGCGAT+AGG + chr5_1:28182468-28182487 Msa0726790:intron 45.0%
CGGTTGCAACAGTTTATCCT+TGG - chr5_1:28182531-28182550 None:intergenic 45.0%
!! TCAGTTGAACCGGTTTGAAC+CGG - chr5_1:28182551-28182570 None:intergenic 45.0%
AATTTCTTCAAGCTCCAGCG+AGG + chr5_1:28182622-28182641 Msa0726790:CDS 45.0%
! TCAACTCACGGTATTTTCGG+CGG - chr5_1:28182683-28182702 None:intergenic 45.0%
CACAATAACAGTGGTACTCG+TGG - chr5_1:28183014-28183033 None:intergenic 45.0%
CACGAGTACCACTGTTATTG+TGG + chr5_1:28183012-28183031 Msa0726790:intron 45.0%
CTCACCACCAAATCAAACCT+TGG - chr5_1:28183396-28183415 None:intergenic 45.0%
! TTTGGACCTTGCTGTCACAA+AGG + chr5_1:28183727-28183746 Msa0726790:intron 45.0%
! AAGGTGCATGAGGTGTTAGA+GGG + chr5_1:28183867-28183886 Msa0726790:intron 45.0%
TGTGCTAACAAGGTGCATGA+GGG - chr5_1:28184096-28184115 None:intergenic 45.0%
TTGTGCTAACAAGGTGCATG+AGG - chr5_1:28184097-28184116 None:intergenic 45.0%
! GCGTGTTTTCATTGTAAGGC+TGG + chr5_1:28184825-28184844 Msa0726790:intron 45.0%
ACGTCGACAACAACTCAAAC+TGG + chr5_1:28185510-28185529 Msa0726790:intron 45.0%
! TTGATGATTCTGACGCCAGT+TGG + chr5_1:28185543-28185562 Msa0726790:intron 45.0%
! GTATTGCAACCGGTTCAAAC+CGG + chr5_1:28185584-28185603 Msa0726790:intron 45.0%
TAAGAAAATGCCGAGGTCGA+GGG - chr5_1:28185623-28185642 None:intergenic 45.0%
AATTTCTTCAAGCTCCAGCG+AGG + chr5_1:28182622-28182641 Msa0726790:CDS 45.0%
TATCTCTGGCGGTTTCTCAT+CGG - chr5_1:28185711-28185730 None:intergenic 45.0%
TCATCAACTCACGGTATCTC+TGG - chr5_1:28185725-28185744 None:intergenic 45.0%
TCACCCCGCAGAAAATAGAA+AGG - chr5_1:28185773-28185792 None:intergenic 45.0%
AAGGTCTGGTGTTCAAACTC+CGG + chr5_1:28186107-28186126 Msa0726790:intron 45.0%
ACAATAACGGCAGTGCTCAT+GGG - chr5_1:28186213-28186232 None:intergenic 45.0%
! ATGAGCACTGCCGTTATTGT+GGG + chr5_1:28186213-28186232 Msa0726790:intron 45.0%
TGCATAGTACTAGCTAGGCT+AGG - chr5_1:28187323-28187342 None:intergenic 45.0%
GGGAAAGAAGCAATACGTCA+TGG - chr5_1:28187365-28187384 None:intergenic 45.0%
CAAATCCTATAGGGGTTTGC+TGG - chr5_1:28188571-28188590 None:intergenic 45.0%
TGAGAGACGTCGGATTAAAG+TGG - chr5_1:28188818-28188837 None:intergenic 45.0%
TGCATGCACTACACATGATG+AGG - chr5_1:28189818-28189837 None:intergenic 45.0%
AGAAGGGGCAAAAGCGAATA+CGG + chr5_1:28189926-28189945 Msa0726790:CDS 45.0%
AAAAGCGAATACGGCAACCA+CGG + chr5_1:28189935-28189954 Msa0726790:CDS 45.0%
ATCTTGAGGATGGCTACAGA+TGG + chr5_1:28189989-28190008 Msa0726790:CDS 45.0%
! ATGGAGGAAGTATGGTCAGA+AGG + chr5_1:28190008-28190027 Msa0726790:CDS 45.0%
!! TTTTGGGTAAGAATGTGGCG+TGG + chr5_1:28190282-28190301 Msa0726790:intron 45.0%
TAAGAATGTGGCGTGGATGT+GGG + chr5_1:28190289-28190308 Msa0726790:intron 45.0%
TTGTGTTGGGTCATCATGAG+GGG - chr5_1:28190329-28190348 None:intergenic 45.0%
GTTGCTACACCAAAACTAGG+TGG - chr5_1:28190403-28190422 None:intergenic 45.0%
GATGAGAGTTGCTGGTGTAT+TGG + chr5_1:28190482-28190501 Msa0726790:intron 45.0%
! CGCTTTTGGTCCCAAATCTT+TGG + chr5_1:28190635-28190654 Msa0726790:intron 45.0%
CTTGTTGCAGGAGCTACTAT+AGG + chr5_1:28190787-28190806 Msa0726790:intron 45.0%
AAGGGTTGAACGTTCTCATG+AGG + chr5_1:28190839-28190858 Msa0726790:CDS 45.0%
ACAGTTGGATTTCCTCGAAG+TGG + chr5_1:28190909-28190928 Msa0726790:CDS 45.0%
GTGCAAGTGTTTAACTCTGC+AGG - chr5_1:28191011-28191030 None:intergenic 45.0%
TTGACATGCCTGAGAAACAG+TGG - chr5_1:28191036-28191055 None:intergenic 45.0%
!! CAAATATATTATATAAATAA+AGG + chr5_1:28183564-28183583 Msa0726790:intron 5.0%
!! TATTTGAAAAAAAAAATAAA+AGG - chr5_1:28184857-28184876 None:intergenic 5.0%
!! TAAAAAAATAAAAAAAAACT+TGG - chr5_1:28186811-28186830 None:intergenic 5.0%
!! AAATAATATATATATATATG+GGG - chr5_1:28188237-28188256 None:intergenic 5.0%
!! AAGAAAAATAAAAATAAAAA+AGG + chr5_1:28189234-28189253 Msa0726790:intron 5.0%
AGCGATAGGTTCGACCACAT+CGG + chr5_1:28182482-28182501 Msa0726790:intron 50.0%
GTACAAGATTCCAGCCGATG+TGG - chr5_1:28182499-28182518 None:intergenic 50.0%
! CATCGGCTGGAATCTTGTAC+CGG + chr5_1:28182499-28182518 Msa0726790:CDS 50.0%
TCTTGTACCGGAAACCACCA+AGG + chr5_1:28182511-28182530 Msa0726790:CDS 50.0%
! CTGTTGCAACCGGTTCAAAC+CGG + chr5_1:28182539-28182558 Msa0726790:CDS 50.0%
! CGATGCCGTTTCAGTTGAAC+CGG - chr5_1:28182561-28182580 None:intergenic 50.0%
CGGTTCAACTGAAACGGCAT+CGG + chr5_1:28182559-28182578 Msa0726790:CDS 50.0%
!! AACTGAAACGGCATCGGTGT+CGG + chr5_1:28182565-28182584 Msa0726790:CDS 50.0%
! TCGGAGACGATCGATTTCTC+CGG - chr5_1:28182653-28182672 None:intergenic 50.0%
CAGAGACCTTTGTGACAGCA+AGG - chr5_1:28183736-28183755 None:intergenic 50.0%
TTGGGCTAACAAGGTGCATG+AGG + chr5_1:28183857-28183876 Msa0726790:intron 50.0%
! CAAGGTGCATGAGGTGTTAG+AGG + chr5_1:28183866-28183885 Msa0726790:intron 50.0%
GTTGTTGTCGACGTCTTCGA+CGG - chr5_1:28185504-28185523 None:intergenic 50.0%
CGCCAGTTGGAATCTTGTAC+CGG + chr5_1:28185556-28185575 Msa0726790:intron 50.0%
GTCCGGTACAAGATTCCAAC+TGG - chr5_1:28185561-28185580 None:intergenic 50.0%
!! CGAGGGCGTTTGAATCAAAC+CGG - chr5_1:28185606-28185625 None:intergenic 50.0%
GTAAGAAAATGCCGAGGTCG+AGG - chr5_1:28185624-28185643 None:intergenic 50.0%
TCAACTCACGGTATCTCTGG+CGG - chr5_1:28185722-28185741 None:intergenic 50.0%
CACAATAACGGCAGTGCTCA+TGG - chr5_1:28186214-28186233 None:intergenic 50.0%
! CATGAGCACTGCCGTTATTG+TGG + chr5_1:28186212-28186231 Msa0726790:intron 50.0%
! TGAGCACTGCCGTTATTGTG+GGG + chr5_1:28186214-28186233 Msa0726790:intron 50.0%
! CACTCACGAATTTTGCCCAG+TGG + chr5_1:28186612-28186631 Msa0726790:intron 50.0%
ACTTGCAGCTTTACTCCCTC+CGG + chr5_1:28186998-28187017 Msa0726790:intron 50.0%
TGTTACAAGCCACCCTTTGG+TGG - chr5_1:28187911-28187930 None:intergenic 50.0%
GTATCCCAGCAAACCCCTAT+AGG + chr5_1:28188563-28188582 Msa0726790:intron 50.0%
TTGAGGATGGCTACAGATGG+AGG + chr5_1:28189992-28190011 Msa0726790:CDS 50.0%
GGCTACAGATGGAGGAAGTA+TGG + chr5_1:28190000-28190019 Msa0726790:CDS 50.0%
GTAAGAATGTGGCGTGGATG+TGG + chr5_1:28190288-28190307 Msa0726790:intron 50.0%
GTAGCACCATGAATAGCGCA+TGG - chr5_1:28190519-28190538 None:intergenic 50.0%
! AGATTTGGGACCAAAAGCGG+CGG - chr5_1:28190634-28190653 None:intergenic 50.0%
!! GAGGCATTGTAGGAGCAAAC+TGG - chr5_1:28190965-28190984 None:intergenic 50.0%
! TTGCACCACCACTGTTTCTC+AGG + chr5_1:28191025-28191044 Msa0726790:CDS 50.0%
ACATGCCTGAGAAACAGTGG+TGG - chr5_1:28191033-28191052 None:intergenic 50.0%
CTAGCCGATGAAGGACTACT+TGG + chr5_1:28191131-28191150 Msa0726790:CDS 50.0%
CTTGGAGATATTGTACCCCG+TGG + chr5_1:28191149-28191168 Msa0726790:CDS 50.0%
GCACCTACCGAAGAGTTCGT+CGG + chr5_1:28182425-28182444 Msa0726790:intron 55.0%
TGAGCTGCCGACGAACTCTT+CGG - chr5_1:28182435-28182454 None:intergenic 55.0%
AGTTCGTCGGCAGCTCAAAC+TGG + chr5_1:28182438-28182457 Msa0726790:intron 55.0%
GATGTGGTCGAACCTATCGC+TGG - chr5_1:28182483-28182502 None:intergenic 55.0%
ATAGGTTCGACCACATCGGC+TGG + chr5_1:28182486-28182505 Msa0726790:intron 55.0%
ACAGTGCTATCCTGTGGCTG+TGG - chr5_1:28184683-28184702 None:intergenic 55.0%
GTCTTCGACGGTTGAGGGAT+CGG - chr5_1:28185492-28185511 None:intergenic 55.0%
TCGACGTCTTCGACGGTTGA+GGG - chr5_1:28185497-28185516 None:intergenic 55.0%
ACCGGACTGCGTATTGCAAC+CGG + chr5_1:28185574-28185593 Msa0726790:intron 55.0%
ACCGGTTGCAATACGCAGTC+CGG - chr5_1:28185578-28185597 None:intergenic 55.0%
GATTCAAACGCCCTCGACCT+CGG + chr5_1:28185610-28185629 Msa0726790:intron 55.0%
AAGCTCCAGCGAGGATCTAC+CGG + chr5_1:28185670-28185689 Msa0726790:intron 55.0%
TGGCGGTTTCTCATCGGAGA+CGG - chr5_1:28185705-28185724 None:intergenic 55.0%
GGAGGGAGTAAAGCTGCAAG+TGG - chr5_1:28186999-28187018 None:intergenic 55.0%
GCGCTACCATGCGCTATTCA+TGG + chr5_1:28190510-28190529 Msa0726790:intron 55.0%
!! TCAATGGTCACCGCCGCTTT+TGG + chr5_1:28190621-28190640 Msa0726790:intron 55.0%
ATCGAGCAGCGCTACAATGC+CGG + chr5_1:28191085-28191104 Msa0726790:CDS 55.0%
! CCTTCATCGGCTAGATCCAG+CGG - chr5_1:28191125-28191144 None:intergenic 55.0%
ATCCCTGTTGCGCATTCCAC+GGG - chr5_1:28191168-28191187 None:intergenic 55.0%
CATCCCTGTTGCGCATTCCA+CGG - chr5_1:28191169-28191188 None:intergenic 55.0%
CTGCCGACGAACTCTTCGGT+AGG - chr5_1:28182431-28182450 None:intergenic 60.0%
AAGCTCCAGCGAGGATCTGC+CGG + chr5_1:28182631-28182650 Msa0726790:CDS 60.0%
TTTCTCCGGCAGATCCTCGC+TGG - chr5_1:28182639-28182658 None:intergenic 60.0%
TGTGGCTGTGGCTGTGACAG+TGG - chr5_1:28184665-28184684 None:intergenic 60.0%
CTATCCTGTGGCTGTGGCTG+TGG - chr5_1:28184677-28184696 None:intergenic 60.0%
TCGACGGTTGAGGGATCGGT+AGG - chr5_1:28185488-28185507 None:intergenic 60.0%
GTCGACGTCTTCGACGGTTG+AGG - chr5_1:28185498-28185517 None:intergenic 60.0%
CTTCTCCGGTAGATCCTCGC+TGG - chr5_1:28185678-28185697 None:intergenic 60.0%
! TCGGAGACGGTGGACTTCTC+CGG - chr5_1:28185692-28185711 None:intergenic 60.0%
CGGTTTCTCATCGGAGACGG+TGG - chr5_1:28185702-28185721 None:intergenic 60.0%
GAATGTGGCGTGGATGTGGG+TGG + chr5_1:28190292-28190311 Msa0726790:intron 60.0%
GTGGATGTGGGTGGTCTCCT+GGG + chr5_1:28190301-28190320 Msa0726790:intron 60.0%
CATCATCCTCATGAGGCCGC+TGG + chr5_1:28191059-28191078 Msa0726790:CDS 60.0%
! TCATCGGCTAGATCCAGCGG+CGG - chr5_1:28191122-28191141 None:intergenic 60.0%
CCGCTGGATCTAGCCGATGA+AGG + chr5_1:28191122-28191141 Msa0726790:CDS 60.0%
TACCCCGTGGAATGCGCAAC+AGG + chr5_1:28191162-28191181 Msa0726790:CDS 60.0%
ACCCCGTGGAATGCGCAACA+GGG + chr5_1:28191163-28191182 Msa0726790:CDS 60.0%
TCCCTGTTGCGCATTCCACG+GGG - chr5_1:28191167-28191186 None:intergenic 60.0%
CGGCGTCAGCGTCGTCTTAC+AGG + chr5_1:28182585-28182604 Msa0726790:CDS 65.0%
ACAGCCACAGCCACAGCCAC+AGG + chr5_1:28184670-28184689 Msa0726790:intron 65.0%
CGTGGATGTGGGTGGTCTCC+TGG + chr5_1:28190300-28190319 Msa0726790:intron 65.0%
GGTCATCATGAGGGGAGCCC+AGG - chr5_1:28190321-28190340 None:intergenic 65.0%
CATCCTCATGAGGCCGCTGG+AGG + chr5_1:28191062-28191081 Msa0726790:CDS 65.0%
GATCCTCCAGCGGCCTCATG+AGG - chr5_1:28191068-28191087 None:intergenic 65.0%
AGCGCTGCTCGATCCTCCAG+CGG - chr5_1:28191078-28191097 None:intergenic 65.0%
AGCGGCGGTGATGCATCAGC+CGG - chr5_1:28191107-28191126 None:intergenic 65.0%
GGCTGATGCATCACCGCCGC+TGG + chr5_1:28191106-28191125 Msa0726790:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 28182407 28191202 28182407 ID=Msa0726790;Name=Msa0726790
chr5_1 mRNA 28182407 28191202 28182407 ID=Msa0726790-mRNA-1;Parent=Msa0726790;Name=Msa0726790-mRNA-1;_AED=0.30;_eAED=0.30;_QI=0|0.33|0.25|1|0|0.25|4|0|257
chr5_1 exon 28182407 28182438 28182407 ID=Msa0726790-mRNA-1:exon:9834;Parent=Msa0726790-mRNA-1
chr5_1 exon 28182490 28182693 28182490 ID=Msa0726790-mRNA-1:exon:9835;Parent=Msa0726790-mRNA-1
chr5_1 exon 28189912 28190055 28189912 ID=Msa0726790-mRNA-1:exon:9836;Parent=Msa0726790-mRNA-1
chr5_1 exon 28190809 28191202 28190809 ID=Msa0726790-mRNA-1:exon:9837;Parent=Msa0726790-mRNA-1
chr5_1 CDS 28182407 28182438 28182407 ID=Msa0726790-mRNA-1:cds;Parent=Msa0726790-mRNA-1
chr5_1 CDS 28182490 28182693 28182490 ID=Msa0726790-mRNA-1:cds;Parent=Msa0726790-mRNA-1
chr5_1 CDS 28189912 28190055 28189912 ID=Msa0726790-mRNA-1:cds;Parent=Msa0726790-mRNA-1
chr5_1 CDS 28190809 28191202 28190809 ID=Msa0726790-mRNA-1:cds;Parent=Msa0726790-mRNA-1
Gene Sequence

>Msa0726790

ATGGAAGACAAAGACAGAGCACCTACCGAAGAGTTCGACCACATCGGCTGGAATCTTGTACCGGAAACCACCAAGGATAAACTGTTGCAACCGGTTCAAACCGGTTCAACTGAAACGGCATCGGTGTCGGCGTCAGCGTCGTCTTACAGGTCAAATAATCAATCAATTTCTTCAAGCTCCAGCGAGGATCTGCCGGAGAAATCGATCGTCTCCGATGAGAAACCGCCGAAAATACCGAACAAAAGTAAGAAGAAGGGGCAAAAGCGAATACGGCAACCACGGTTTGCATTTATGACCAAGAGTGAAGTTGATCATCTTGAGGATGGCTACAGATGGAGGAAGTATGGTCAGAAGGCAGTTAAAAATAGTTCATTCCCTAGGTGCACAAATAGTAAATGCACGGTGAAGAAAAGGGTTGAACGTTCTCATGAGGACCCAACAATTGTTATAACTACATATGAAGGCCAACATTGTCATCACACAGTTGGATTTCCTCGAAGTGGAATCATTAGTCATGAATCTTCTTTTACTGGCCAGTTTGCTCCTACAATGCCTCAATTCTATTATCCTGTTCAATTACCTGCAGAGTTAAACACTTGCACCACCACTGTTTCTCAGGCATGTCAAACACATCATCCTCATGAGGCCGCTGGAGGATCGAGCAGCGCTACAATGCCGGCTGATGCATCACCGCCGCTGGATCTAGCCGATGAAGGACTACTTGGAGATATTGTACCCCGTGGAATGCGCAACAGGGATGAGAGAAATATTTGA
Protein sequence

>Msa0726790

MEDKDRAPTEEFDHIGWNLVPETTKDKLLQPVQTGSTETASVSASASSYRSNNQSISSSSSEDLPEKSIVSDEKPPKIPNKSKKKGQKRIRQPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSSFPRCTNSKCTVKKRVERSHEDPTIVITTYEGQHCHHTVGFPRSGIISHESSFTGQFAPTMPQFYYPVQLPAELNTCTTTVSQACQTHHPHEAAGGSSSATMPADASPPLDLADEGLLGDIVPRGMRNRDERNI*