Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0726900 | AES97051.1 | 90.446 | 314 | 30 | 0 | 1 | 314 | 1 | 314 | 0.0 | 593 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0726900 | sp|Q8L3W1|VRN1_ARATH | 28.280 | 343 | 185 | 10 | 16 | 306 | 6 | 339 | 3.87e-31 | 122 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0726900 | G7JXZ7 | 90.446 | 314 | 30 | 0 | 1 | 314 | 1 | 314 | 0.0 | 593 |
Gene ID | Type | Classification |
---|---|---|
Msa0726900 | TF | B3 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0726900 | MtrunA17_Chr5g0419201 | 88.136 | 177 | 21 | 0 | 1 | 177 | 1 | 177 | 7.71e-114 | 327 |
Msa0726900 | MtrunA17_Chr5g0419211 | 88.421 | 95 | 11 | 0 | 223 | 317 | 10 | 104 | 3.58e-55 | 175 |
Msa0726900 | MtrunA17_Chr3g0131891 | 33.113 | 302 | 179 | 8 | 16 | 307 | 19 | 307 | 3.93e-44 | 154 |
Msa0726900 | MtrunA17_Chr7g0233561 | 31.715 | 309 | 182 | 9 | 16 | 306 | 18 | 315 | 1.08e-42 | 150 |
Msa0726900 | MtrunA17_Chr8g0390841 | 27.928 | 333 | 188 | 8 | 2 | 307 | 28 | 335 | 5.69e-41 | 149 |
Msa0726900 | MtrunA17_Chr1g0208771 | 29.642 | 307 | 166 | 8 | 32 | 310 | 13 | 297 | 1.10e-38 | 142 |
Msa0726900 | MtrunA17_Chr7g0233541 | 30.233 | 301 | 180 | 7 | 31 | 311 | 1 | 291 | 4.25e-38 | 137 |
Msa0726900 | MtrunA17_Chr1g0163251 | 32.353 | 306 | 169 | 9 | 25 | 317 | 14 | 294 | 5.84e-38 | 139 |
Msa0726900 | MtrunA17_Chr1g0163181 | 31.034 | 290 | 187 | 5 | 25 | 307 | 14 | 297 | 1.02e-37 | 139 |
Msa0726900 | MtrunA17_Chr1g0163261 | 31.153 | 321 | 182 | 10 | 10 | 316 | 3 | 298 | 1.16e-37 | 135 |
Msa0726900 | MtrunA17_Chr7g0233531 | 32.990 | 291 | 168 | 8 | 31 | 311 | 1 | 274 | 1.39e-37 | 135 |
Msa0726900 | MtrunA17_Chr7g0233521 | 30.928 | 291 | 174 | 9 | 31 | 311 | 1 | 274 | 9.81e-36 | 130 |
Msa0726900 | MtrunA17_Chr1g0163221 | 30.097 | 309 | 191 | 10 | 16 | 315 | 11 | 303 | 1.53e-33 | 126 |
Msa0726900 | MtrunA17_Chr4g0067431 | 28.107 | 338 | 206 | 11 | 1 | 315 | 1 | 324 | 2.51e-33 | 125 |
Msa0726900 | MtrunA17_Chr3g0103191 | 29.572 | 257 | 161 | 8 | 16 | 269 | 12 | 251 | 1.36e-32 | 121 |
Msa0726900 | MtrunA17_Chr3g0103181 | 28.322 | 286 | 186 | 5 | 16 | 301 | 12 | 278 | 3.32e-32 | 120 |
Msa0726900 | MtrunA17_Chr1g0163071 | 28.254 | 315 | 180 | 8 | 31 | 315 | 1 | 299 | 1.04e-31 | 120 |
Msa0726900 | MtrunA17_Chr3g0103171 | 29.391 | 279 | 168 | 6 | 32 | 301 | 6 | 264 | 1.05e-31 | 119 |
Msa0726900 | MtrunA17_Chr1g0163201 | 28.276 | 290 | 175 | 5 | 32 | 307 | 19 | 289 | 6.56e-31 | 120 |
Msa0726900 | MtrunA17_Chr1g0163231 | 29.605 | 304 | 179 | 8 | 10 | 304 | 3 | 280 | 1.31e-30 | 117 |
Msa0726900 | MtrunA17_Chr7g0233571 | 34.862 | 218 | 118 | 6 | 16 | 220 | 10 | 216 | 2.26e-30 | 114 |
Msa0726900 | MtrunA17_Chr1g0171611 | 29.236 | 301 | 172 | 10 | 10 | 304 | 3 | 268 | 1.81e-28 | 111 |
Msa0726900 | MtrunA17_Chr3g0077411 | 29.333 | 300 | 162 | 8 | 16 | 306 | 262 | 520 | 1.95e-28 | 114 |
Msa0726900 | MtrunA17_Chr3g0077411 | 32.639 | 144 | 94 | 3 | 2 | 144 | 12 | 153 | 8.12e-18 | 84.0 |
Msa0726900 | MtrunA17_Chr1g0163131 | 29.934 | 304 | 181 | 11 | 16 | 302 | 18 | 306 | 1.91e-26 | 106 |
Msa0726900 | MtrunA17_Chr3g0077451 | 26.882 | 279 | 151 | 8 | 30 | 306 | 10 | 237 | 3.98e-26 | 103 |
Msa0726900 | MtrunA17_Chr1g0163101 | 38.806 | 134 | 76 | 3 | 16 | 149 | 17 | 144 | 3.26e-24 | 97.1 |
Msa0726900 | MtrunA17_Chr3g0103151 | 34.395 | 157 | 85 | 4 | 16 | 165 | 12 | 157 | 4.49e-24 | 96.3 |
Msa0726900 | MtrunA17_Chr5g0429931 | 25.271 | 277 | 163 | 7 | 32 | 306 | 11 | 245 | 1.81e-22 | 94.4 |
Msa0726900 | MtrunA17_Chr3g0103201 | 27.426 | 237 | 142 | 8 | 74 | 301 | 4 | 219 | 7.84e-22 | 91.7 |
Msa0726900 | MtrunA17_Chr3g0077461 | 33.562 | 146 | 96 | 1 | 2 | 147 | 223 | 367 | 2.26e-21 | 94.0 |
Msa0726900 | MtrunA17_Chr3g0077461 | 33.010 | 103 | 68 | 1 | 32 | 134 | 23 | 124 | 1.98e-15 | 76.6 |
Msa0726900 | MtrunA17_Chr1g0154131 | 23.711 | 291 | 201 | 7 | 27 | 306 | 193 | 473 | 4.66e-20 | 90.5 |
Msa0726900 | MtrunA17_Chr6g0476181 | 37.681 | 138 | 72 | 4 | 31 | 168 | 1 | 124 | 1.29e-19 | 84.3 |
Msa0726900 | MtrunA17_Chr1g0162441 | 31.667 | 180 | 110 | 3 | 16 | 195 | 7 | 173 | 1.67e-19 | 88.6 |
Msa0726900 | MtrunA17_Chr1g0154111 | 23.353 | 334 | 205 | 7 | 27 | 311 | 37 | 368 | 2.27e-19 | 88.6 |
Msa0726900 | MtrunA17_Chr1g0154161 | 25.352 | 284 | 184 | 9 | 27 | 301 | 41 | 305 | 2.32e-19 | 87.0 |
Msa0726900 | MtrunA17_Chr1g0163141 | 35.664 | 143 | 83 | 4 | 28 | 170 | 7 | 140 | 3.02e-19 | 84.0 |
Msa0726900 | MtrunA17_Chr1g0163121 | 40.000 | 120 | 65 | 4 | 27 | 146 | 6 | 118 | 3.48e-19 | 82.4 |
Msa0726900 | MtrunA17_Chr1g0163241 | 30.864 | 162 | 97 | 4 | 7 | 168 | 6 | 152 | 1.03e-18 | 82.0 |
Msa0726900 | MtrunA17_Chr1g0162161 | 36.134 | 119 | 69 | 3 | 31 | 149 | 3 | 114 | 2.32e-18 | 80.9 |
Msa0726900 | MtrunA17_Chr4g0033961 | 33.103 | 145 | 96 | 1 | 13 | 157 | 3 | 146 | 3.11e-18 | 84.7 |
Msa0726900 | MtrunA17_Chr6g0467351 | 37.391 | 115 | 70 | 2 | 1 | 114 | 1 | 114 | 6.29e-18 | 81.3 |
Msa0726900 | MtrunA17_Chr1g0163081 | 38.793 | 116 | 64 | 4 | 31 | 146 | 5 | 113 | 6.47e-18 | 79.3 |
Msa0726900 | MtrunA17_Chr1g0162411 | 38.776 | 98 | 60 | 0 | 16 | 113 | 7 | 104 | 1.32e-17 | 83.2 |
Msa0726900 | MtrunA17_Chr1g0163191 | 37.624 | 101 | 61 | 1 | 25 | 125 | 14 | 112 | 4.67e-17 | 77.4 |
Msa0726900 | MtrunA17_Chr1g0162151 | 40.217 | 92 | 54 | 1 | 224 | 315 | 41 | 131 | 5.74e-17 | 78.6 |
Msa0726900 | MtrunA17_Chr4g0009491 | 25.431 | 232 | 134 | 5 | 9 | 240 | 218 | 410 | 6.98e-17 | 80.9 |
Msa0726900 | MtrunA17_Chr4g0009491 | 25.287 | 261 | 121 | 8 | 30 | 284 | 11 | 203 | 2.61e-15 | 76.3 |
Msa0726900 | MtrunA17_Chr1g0163061 | 38.000 | 100 | 61 | 1 | 16 | 114 | 15 | 114 | 9.80e-17 | 78.6 |
Msa0726900 | MtrunA17_Chr3g0077361 | 33.600 | 125 | 81 | 2 | 13 | 136 | 37 | 160 | 1.09e-16 | 80.5 |
Msa0726900 | MtrunA17_Chr3g0077381 | 37.647 | 85 | 53 | 0 | 30 | 114 | 34 | 118 | 2.31e-15 | 76.3 |
Msa0726900 | MtrunA17_Chr3g0077381 | 33.333 | 108 | 71 | 1 | 20 | 127 | 251 | 357 | 1.94e-14 | 73.6 |
Msa0726900 | MtrunA17_Chr1g0163091 | 35.965 | 114 | 70 | 2 | 204 | 315 | 19 | 131 | 2.76e-15 | 72.4 |
Msa0726900 | MtrunA17_Chr1g0163161 | 40.777 | 103 | 55 | 4 | 44 | 146 | 1 | 97 | 4.04e-15 | 71.2 |
Msa0726900 | MtrunA17_Chr1g0163111 | 33.654 | 104 | 66 | 2 | 205 | 306 | 12 | 114 | 3.15e-13 | 68.2 |
Msa0726900 | MtrunA17_Chr1g0154101 | 38.750 | 80 | 49 | 0 | 27 | 106 | 193 | 272 | 4.88e-12 | 66.6 |
Msa0726900 | MtrunA17_Chr1g0154101 | 33.333 | 90 | 60 | 0 | 16 | 105 | 25 | 114 | 8.17e-11 | 63.2 |
Msa0726900 | MtrunA17_Chr1g0154211 | 34.444 | 90 | 59 | 0 | 17 | 106 | 23 | 112 | 7.09e-12 | 65.9 |
Msa0726900 | MtrunA17_Chr1g0154171 | 33.333 | 81 | 54 | 0 | 27 | 107 | 33 | 113 | 7.67e-11 | 62.4 |
Msa0726900 | MtrunA17_Chr6g0476171 | 29.851 | 134 | 90 | 3 | 185 | 314 | 13 | 146 | 8.57e-11 | 61.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0726900 | AT3G18990.2 | 28.571 | 343 | 184 | 10 | 16 | 306 | 6 | 339 | 1.21e-32 | 124 |
Msa0726900 | AT3G18990.1 | 28.280 | 343 | 185 | 10 | 16 | 306 | 6 | 339 | 3.93e-32 | 122 |
Msa0726900 | AT4G01580.1 | 38.095 | 147 | 75 | 4 | 16 | 161 | 30 | 161 | 6.50e-20 | 86.3 |
Msa0726900 | AT3G18960.2 | 41.414 | 99 | 58 | 0 | 16 | 114 | 30 | 128 | 7.38e-18 | 80.5 |
Msa0726900 | AT3G18960.1 | 41.414 | 99 | 58 | 0 | 16 | 114 | 30 | 128 | 9.99e-18 | 80.5 |
Msa0726900 | AT1G49475.1 | 35.669 | 157 | 88 | 5 | 16 | 166 | 34 | 183 | 2.84e-17 | 79.0 |
Msa0726900 | AT4G33280.1 | 22.603 | 292 | 205 | 7 | 30 | 306 | 37 | 322 | 1.03e-15 | 77.0 |
Msa0726900 | AT3G18960.3 | 42.169 | 83 | 48 | 0 | 32 | 114 | 9 | 91 | 9.39e-14 | 68.9 |
Find 57 sgRNAs with CRISPR-Local
Find 186 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTCTACCAAATGGTGATAAA+TGG | 0.158299 | 5_1:+28566159 | Msa0726900:CDS |
AGCATTGAACTTGAAGTTTA+AGG | 0.206027 | 5_1:-28567147 | None:intergenic |
CTTTCCATTCAAATACTCTT+TGG | 0.236141 | 5_1:-28567078 | None:intergenic |
GTGATAAATGGGAAGTAAAT+TGG | 0.244779 | 5_1:+28566171 | Msa0726900:CDS |
GCGCTTTGGAAATGGATTAT+TGG | 0.263628 | 5_1:+28566330 | Msa0726900:CDS |
AGACGATTATATTGAGATTT+CGG | 0.264534 | 5_1:+28566427 | Msa0726900:CDS |
ATGCAACGGGCGAATGAAAA+AGG | 0.275521 | 5_1:-28566786 | None:intergenic |
TTTGGTAGAACTAGGGTTAC+TGG | 0.318076 | 5_1:-28566146 | None:intergenic |
CATGACGTTGTGTTTCAAAA+TGG | 0.334132 | 5_1:+28566206 | Msa0726900:CDS |
AAACACTACAAAATACTAAA+AGG | 0.340468 | 5_1:+28566735 | Msa0726900:CDS |
TTTCTTTCAACTTGATCTCT+AGG | 0.366619 | 5_1:-28566365 | None:intergenic |
CATCAAATGAAGCTATGAAT+TGG | 0.370847 | 5_1:+28566708 | Msa0726900:CDS |
TCAACTTGATCTCTAGGGCT+TGG | 0.372702 | 5_1:-28566359 | None:intergenic |
GATATTTGACAAAAGCGCTT+TGG | 0.378554 | 5_1:+28566316 | Msa0726900:CDS |
CAACACTATTCAATGAGTTA+TGG | 0.379815 | 5_1:+28566245 | Msa0726900:CDS |
TGACAAAAGCGCTTTGGAAA+TGG | 0.381408 | 5_1:+28566322 | Msa0726900:CDS |
TCTTGCTCCGCGCACTTTCA+AGG | 0.393318 | 5_1:+28567314 | Msa0726900:CDS |
AACACTATTCAATGAGTTAT+GGG | 0.394195 | 5_1:+28566246 | Msa0726900:CDS |
GAGGAATATAATTTCAAAGT+TGG | 0.395164 | 5_1:+28567215 | Msa0726900:CDS |
TTTACAATTTCAGGAGGTAA+TGG | 0.402632 | 5_1:+28566656 | Msa0726900:intron |
CCTTTGAGATGGACCATCAC+TGG | 0.419968 | 5_1:-28566504 | None:intergenic |
TCCATCCTACCTTGAACATA+TGG | 0.422875 | 5_1:+28566808 | Msa0726900:CDS |
ACTTCCCATTTATCACCATT+TGG | 0.427050 | 5_1:-28566164 | None:intergenic |
GGGATTGCAACCGTGGTGTT+TGG | 0.435175 | 5_1:+28567104 | Msa0726900:CDS |
AGTTATGAGTGCTCGATTAG+TGG | 0.441965 | 5_1:-28567171 | None:intergenic |
TCTACCAAATGGTGATAAAT+GGG | 0.445463 | 5_1:+28566160 | Msa0726900:CDS |
TTCTTTCAACTTGATCTCTA+GGG | 0.452245 | 5_1:-28566364 | None:intergenic |
GAGTATTTGAATGGAAAGGA+TGG | 0.463140 | 5_1:+28567083 | Msa0726900:CDS |
AATCGAGCACTCATAACTTC+TGG | 0.465532 | 5_1:+28567176 | Msa0726900:CDS |
CGTTGTGTTTCAAAATGGTT+GGG | 0.465755 | 5_1:+28566211 | Msa0726900:CDS |
CAATGTAACAGATGATTCCT+AGG | 0.470035 | 5_1:+28566087 | Msa0726900:intron |
TATCACCATTTGGTAGAACT+AGG | 0.471668 | 5_1:-28566154 | None:intergenic |
GTTATCGGAATGAAAATTCA+TGG | 0.486333 | 5_1:-28566762 | None:intergenic |
TATTTCTTCACAAAACTCCT+AGG | 0.496072 | 5_1:-28566104 | None:intergenic |
CAAAGAGTATTTGAATGGAA+AGG | 0.500378 | 5_1:+28567079 | Msa0726900:CDS |
TACTCTTTGGAAAACGATGT+TGG | 0.517680 | 5_1:-28567065 | None:intergenic |
TTGGTAGAACTAGGGTTACT+GGG | 0.523068 | 5_1:-28566145 | None:intergenic |
CAAGGTAGGATGGATGCAAC+GGG | 0.527483 | 5_1:-28566799 | None:intergenic |
ATCACCATTTGGTAGAACTA+GGG | 0.529841 | 5_1:-28566153 | None:intergenic |
ACCATATGTTCAAGGTAGGA+TGG | 0.542632 | 5_1:-28566809 | None:intergenic |
GTAACCCTAGTTCTACCAAA+TGG | 0.543476 | 5_1:+28566149 | Msa0726900:CDS |
ATATAGATACCATATGTTCA+AGG | 0.544245 | 5_1:-28566817 | None:intergenic |
AGTATTTGAATGGAAAGGAT+GGG | 0.554047 | 5_1:+28567084 | Msa0726900:CDS |
CGCGGAGCAAGATTGATCAC+TGG | 0.555616 | 5_1:-28567303 | None:intergenic |
ACGTTGTGTTTCAAAATGGT+TGG | 0.559115 | 5_1:+28566210 | Msa0726900:CDS |
AAAAGAATGAAAACCAGTGA+TGG | 0.566067 | 5_1:+28566491 | Msa0726900:CDS |
AACCGTGGTGTTTGGTGATG+AGG | 0.573245 | 5_1:+28567112 | Msa0726900:CDS |
GAGCACTCATAACTTCTGGT+TGG | 0.583650 | 5_1:+28567180 | Msa0726900:CDS |
TGGTTGGAGACAAATTGTTG+AGG | 0.606845 | 5_1:+28567196 | Msa0726900:CDS |
TCAAGGTAGGATGGATGCAA+CGG | 0.607292 | 5_1:-28566800 | None:intergenic |
AGATACCATATGTTCAAGGT+AGG | 0.608884 | 5_1:-28566813 | None:intergenic |
TGGAACTGATGAACAACACT+CGG | 0.613370 | 5_1:-28565869 | None:intergenic |
TTTAATACCTTGAAAGTGCG+CGG | 0.633523 | 5_1:-28567321 | None:intergenic |
CATGAAGATGCTGAAAAGAG+TGG | 0.644431 | 5_1:+28566398 | Msa0726900:CDS |
AAAGGATGGGATTGCAACCG+TGG | 0.682554 | 5_1:+28567097 | Msa0726900:CDS |
ATCCTCATCACCAAACACCA+CGG | 0.689007 | 5_1:-28567114 | None:intergenic |
TTGGTGATGAGGATAAGACT+TGG | 0.724527 | 5_1:+28567123 | Msa0726900:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATTAATTAAACTAAAAAGAA+TGG | - | chr5_1:28566932-28566951 | None:intergenic | 10.0% |
!! | ATTAATTAAACTAAAAAGAA+TGG | - | chr5_1:28566932-28566951 | None:intergenic | 10.0% |
!! | AAAGTAGAAAACTAAATAAA+AGG | - | chr5_1:28565968-28565987 | None:intergenic | 15.0% |
!!! | AGTTTTCTACTTTAATATTT+TGG | + | chr5_1:28565975-28565994 | Msa0726900:intron | 15.0% |
!!! | AGTATTTTTTTTACAATTTC+AGG | + | chr5_1:28566647-28566666 | Msa0726900:intron | 15.0% |
!!! | CTTTTTAGTTTAATTAATGA+AGG | + | chr5_1:28566934-28566953 | Msa0726900:intron | 15.0% |
!! | AGAAAAAAATATCAAGATTT+AGG | - | chr5_1:28567014-28567033 | None:intergenic | 15.0% |
!! | AAAGTAGAAAACTAAATAAA+AGG | - | chr5_1:28565968-28565987 | None:intergenic | 15.0% |
!!! | AGTTTTCTACTTTAATATTT+TGG | + | chr5_1:28565975-28565994 | Msa0726900:intron | 15.0% |
!!! | AGTATTTTTTTTACAATTTC+AGG | + | chr5_1:28566647-28566666 | Msa0726900:intron | 15.0% |
!!! | CTTTTTAGTTTAATTAATGA+AGG | + | chr5_1:28566934-28566953 | Msa0726900:intron | 15.0% |
!! | AGAAAAAAATATCAAGATTT+AGG | - | chr5_1:28567014-28567033 | None:intergenic | 15.0% |
!!! | TACAATCTCTTTCTTTTTAA+GGG | - | chr5_1:28565933-28565952 | None:intergenic | 20.0% |
!!! | TTACAATCTCTTTCTTTTTA+AGG | - | chr5_1:28565934-28565953 | None:intergenic | 20.0% |
!! | TATGAATGTGTCTAAATAAA+AGG | - | chr5_1:28566007-28566026 | None:intergenic | 20.0% |
!!! | CATTAATTTTTTCCTTCTTT+AGG | - | chr5_1:28566535-28566554 | None:intergenic | 20.0% |
!! | AAAGAAGGAAAAAATTAATG+TGG | + | chr5_1:28566535-28566554 | Msa0726900:intron | 20.0% |
!! | AATGTGGATAAAAAAATCAA+AGG | + | chr5_1:28566551-28566570 | Msa0726900:intron | 20.0% |
!! | GTATCAATTTAACATTATGA+TGG | - | chr5_1:28566615-28566634 | None:intergenic | 20.0% |
!!! | ATTTTTTTTACAATTTCAGG+AGG | + | chr5_1:28566650-28566669 | Msa0726900:intron | 20.0% |
!! | AAACACTACAAAATACTAAA+AGG | + | chr5_1:28566735-28566754 | Msa0726900:CDS | 20.0% |
!! | TTAAACTAGATAGTAAAATG+TGG | - | chr5_1:28566868-28566887 | None:intergenic | 20.0% |
!! | TTAAACTAAAAAGAATGGAA+AGG | - | chr5_1:28566927-28566946 | None:intergenic | 20.0% |
!! | TCTTGTGTTTAAATGATAAT+TGG | + | chr5_1:28567031-28567050 | Msa0726900:intron | 20.0% |
!!! | TACAATCTCTTTCTTTTTAA+GGG | - | chr5_1:28565933-28565952 | None:intergenic | 20.0% |
!!! | TTACAATCTCTTTCTTTTTA+AGG | - | chr5_1:28565934-28565953 | None:intergenic | 20.0% |
!! | TATGAATGTGTCTAAATAAA+AGG | - | chr5_1:28566007-28566026 | None:intergenic | 20.0% |
!!! | CATTAATTTTTTCCTTCTTT+AGG | - | chr5_1:28566535-28566554 | None:intergenic | 20.0% |
!! | AAAGAAGGAAAAAATTAATG+TGG | + | chr5_1:28566535-28566554 | Msa0726900:intron | 20.0% |
!! | AATGTGGATAAAAAAATCAA+AGG | + | chr5_1:28566551-28566570 | Msa0726900:intron | 20.0% |
!! | GTATCAATTTAACATTATGA+TGG | - | chr5_1:28566615-28566634 | None:intergenic | 20.0% |
!!! | ATTTTTTTTACAATTTCAGG+AGG | + | chr5_1:28566650-28566669 | Msa0726900:intron | 20.0% |
!! | AAACACTACAAAATACTAAA+AGG | + | chr5_1:28566735-28566754 | Msa0726900:CDS | 20.0% |
!! | TTAAACTAGATAGTAAAATG+TGG | - | chr5_1:28566868-28566887 | None:intergenic | 20.0% |
!! | TTAAACTAAAAAGAATGGAA+AGG | - | chr5_1:28566927-28566946 | None:intergenic | 20.0% |
!! | TCTTGTGTTTAAATGATAAT+TGG | + | chr5_1:28567031-28567050 | Msa0726900:intron | 20.0% |
! | TGAAAAAACATTGTGACTTA+TGG | - | chr5_1:28565892-28565911 | None:intergenic | 25.0% |
!!! | TTTCTTTTTAGTGCAATTGT+TGG | + | chr5_1:28566029-28566048 | Msa0726900:intron | 25.0% |
! | AACACTATTCAATGAGTTAT+GGG | + | chr5_1:28566246-28566265 | Msa0726900:CDS | 25.0% |
!!! | TAGTTTTTAGACTTGAAACA+AGG | + | chr5_1:28566276-28566295 | Msa0726900:CDS | 25.0% |
! | AGACGATTATATTGAGATTT+CGG | + | chr5_1:28566427-28566446 | Msa0726900:CDS | 25.0% |
! | GAGGAGAATAATTAAAATGA+AGG | - | chr5_1:28566593-28566612 | None:intergenic | 25.0% |
! | TCAATTTAACATTATGATGG+AGG | - | chr5_1:28566612-28566631 | None:intergenic | 25.0% |
! | ATATAGATACCATATGTTCA+AGG | - | chr5_1:28566820-28566839 | None:intergenic | 25.0% |
!! | ATGTGGAAATTGATTCTAAA+AGG | - | chr5_1:28566851-28566870 | None:intergenic | 25.0% |
!!! | TTTTCCAAAGAGTATTTGAA+TGG | + | chr5_1:28567074-28567093 | Msa0726900:CDS | 25.0% |
! | GAGGAATATAATTTCAAAGT+TGG | + | chr5_1:28567215-28567234 | Msa0726900:CDS | 25.0% |
! | TGAAAAAACATTGTGACTTA+TGG | - | chr5_1:28565892-28565911 | None:intergenic | 25.0% |
!!! | TTTCTTTTTAGTGCAATTGT+TGG | + | chr5_1:28566029-28566048 | Msa0726900:intron | 25.0% |
! | AACACTATTCAATGAGTTAT+GGG | + | chr5_1:28566246-28566265 | Msa0726900:CDS | 25.0% |
!!! | TAGTTTTTAGACTTGAAACA+AGG | + | chr5_1:28566276-28566295 | Msa0726900:CDS | 25.0% |
! | AGACGATTATATTGAGATTT+CGG | + | chr5_1:28566427-28566446 | Msa0726900:CDS | 25.0% |
! | GAGGAGAATAATTAAAATGA+AGG | - | chr5_1:28566593-28566612 | None:intergenic | 25.0% |
! | TCAATTTAACATTATGATGG+AGG | - | chr5_1:28566612-28566631 | None:intergenic | 25.0% |
! | ATATAGATACCATATGTTCA+AGG | - | chr5_1:28566820-28566839 | None:intergenic | 25.0% |
!! | ATGTGGAAATTGATTCTAAA+AGG | - | chr5_1:28566851-28566870 | None:intergenic | 25.0% |
!!! | TTTTCCAAAGAGTATTTGAA+TGG | + | chr5_1:28567074-28567093 | Msa0726900:CDS | 25.0% |
! | GAGGAATATAATTTCAAAGT+TGG | + | chr5_1:28567215-28567234 | Msa0726900:CDS | 25.0% |
TATTTCTTCACAAAACTCCT+AGG | - | chr5_1:28566107-28566126 | None:intergenic | 30.0% | |
!! | AGGAGTTTTGTGAAGAAATA+TGG | + | chr5_1:28566107-28566126 | Msa0726900:CDS | 30.0% |
!! | GGAGTTTTGTGAAGAAATAT+GGG | + | chr5_1:28566108-28566127 | Msa0726900:CDS | 30.0% |
TTCTACCAAATGGTGATAAA+TGG | + | chr5_1:28566159-28566178 | Msa0726900:CDS | 30.0% | |
TCTACCAAATGGTGATAAAT+GGG | + | chr5_1:28566160-28566179 | Msa0726900:CDS | 30.0% | |
GTGATAAATGGGAAGTAAAT+TGG | + | chr5_1:28566171-28566190 | Msa0726900:CDS | 30.0% | |
!!! | ATTTTGAAACACAACGTCAT+GGG | - | chr5_1:28566207-28566226 | None:intergenic | 30.0% |
CAACACTATTCAATGAGTTA+TGG | + | chr5_1:28566245-28566264 | Msa0726900:CDS | 30.0% | |
TTCTTTCAACTTGATCTCTA+GGG | - | chr5_1:28566367-28566386 | None:intergenic | 30.0% | |
TTTCTTTCAACTTGATCTCT+AGG | - | chr5_1:28566368-28566387 | None:intergenic | 30.0% | |
AAAAGAATGAAAACCAGTGA+TGG | + | chr5_1:28566491-28566510 | Msa0726900:CDS | 30.0% | |
!! | TTTAGGTTTTTCCTTTGAGA+TGG | - | chr5_1:28566518-28566537 | None:intergenic | 30.0% |
TCAAAGGAAAAACCTAAAGA+AGG | + | chr5_1:28566520-28566539 | Msa0726900:intron | 30.0% | |
TTTACAATTTCAGGAGGTAA+TGG | + | chr5_1:28566656-28566675 | Msa0726900:intron | 30.0% | |
CATCAAATGAAGCTATGAAT+TGG | + | chr5_1:28566708-28566727 | Msa0726900:CDS | 30.0% | |
GTTATCGGAATGAAAATTCA+TGG | - | chr5_1:28566765-28566784 | None:intergenic | 30.0% | |
CTTTCCATTCAAATACTCTT+TGG | - | chr5_1:28567081-28567100 | None:intergenic | 30.0% | |
!! | CAAAGAGTATTTGAATGGAA+AGG | + | chr5_1:28567079-28567098 | Msa0726900:CDS | 30.0% |
AGTATTTGAATGGAAAGGAT+GGG | + | chr5_1:28567084-28567103 | Msa0726900:CDS | 30.0% | |
! | AGCATTGAACTTGAAGTTTA+AGG | - | chr5_1:28567150-28567169 | None:intergenic | 30.0% |
TATTTCTTCACAAAACTCCT+AGG | - | chr5_1:28566107-28566126 | None:intergenic | 30.0% | |
!! | AGGAGTTTTGTGAAGAAATA+TGG | + | chr5_1:28566107-28566126 | Msa0726900:CDS | 30.0% |
!! | GGAGTTTTGTGAAGAAATAT+GGG | + | chr5_1:28566108-28566127 | Msa0726900:CDS | 30.0% |
TTCTACCAAATGGTGATAAA+TGG | + | chr5_1:28566159-28566178 | Msa0726900:CDS | 30.0% | |
TCTACCAAATGGTGATAAAT+GGG | + | chr5_1:28566160-28566179 | Msa0726900:CDS | 30.0% | |
GTGATAAATGGGAAGTAAAT+TGG | + | chr5_1:28566171-28566190 | Msa0726900:CDS | 30.0% | |
!!! | ATTTTGAAACACAACGTCAT+GGG | - | chr5_1:28566207-28566226 | None:intergenic | 30.0% |
CAACACTATTCAATGAGTTA+TGG | + | chr5_1:28566245-28566264 | Msa0726900:CDS | 30.0% | |
TTCTTTCAACTTGATCTCTA+GGG | - | chr5_1:28566367-28566386 | None:intergenic | 30.0% | |
TTTCTTTCAACTTGATCTCT+AGG | - | chr5_1:28566368-28566387 | None:intergenic | 30.0% | |
AAAAGAATGAAAACCAGTGA+TGG | + | chr5_1:28566491-28566510 | Msa0726900:CDS | 30.0% | |
!! | TTTAGGTTTTTCCTTTGAGA+TGG | - | chr5_1:28566518-28566537 | None:intergenic | 30.0% |
TCAAAGGAAAAACCTAAAGA+AGG | + | chr5_1:28566520-28566539 | Msa0726900:intron | 30.0% | |
TTTACAATTTCAGGAGGTAA+TGG | + | chr5_1:28566656-28566675 | Msa0726900:intron | 30.0% | |
CATCAAATGAAGCTATGAAT+TGG | + | chr5_1:28566708-28566727 | Msa0726900:CDS | 30.0% | |
GTTATCGGAATGAAAATTCA+TGG | - | chr5_1:28566765-28566784 | None:intergenic | 30.0% | |
CTTTCCATTCAAATACTCTT+TGG | - | chr5_1:28567081-28567100 | None:intergenic | 30.0% | |
!! | CAAAGAGTATTTGAATGGAA+AGG | + | chr5_1:28567079-28567098 | Msa0726900:CDS | 30.0% |
AGTATTTGAATGGAAAGGAT+GGG | + | chr5_1:28567084-28567103 | Msa0726900:CDS | 30.0% | |
! | AGCATTGAACTTGAAGTTTA+AGG | - | chr5_1:28567150-28567169 | None:intergenic | 30.0% |
CAATGTAACAGATGATTCCT+AGG | + | chr5_1:28566087-28566106 | Msa0726900:intron | 35.0% | |
ATCACCATTTGGTAGAACTA+GGG | - | chr5_1:28566156-28566175 | None:intergenic | 35.0% | |
TATCACCATTTGGTAGAACT+AGG | - | chr5_1:28566157-28566176 | None:intergenic | 35.0% | |
ACTTCCCATTTATCACCATT+TGG | - | chr5_1:28566167-28566186 | None:intergenic | 35.0% | |
!!! | CATTTTGAAACACAACGTCA+TGG | - | chr5_1:28566208-28566227 | None:intergenic | 35.0% |
CATGACGTTGTGTTTCAAAA+TGG | + | chr5_1:28566206-28566225 | Msa0726900:CDS | 35.0% | |
ACGTTGTGTTTCAAAATGGT+TGG | + | chr5_1:28566210-28566229 | Msa0726900:CDS | 35.0% | |
CGTTGTGTTTCAAAATGGTT+GGG | + | chr5_1:28566211-28566230 | Msa0726900:CDS | 35.0% | |
!! | GATATTTGACAAAAGCGCTT+TGG | + | chr5_1:28566316-28566335 | Msa0726900:CDS | 35.0% |
!! | CTGGTTTTCATTCTTTTCTG+AGG | - | chr5_1:28566488-28566507 | None:intergenic | 35.0% |
AGATACCATATGTTCAAGGT+AGG | - | chr5_1:28566816-28566835 | None:intergenic | 35.0% | |
! | TACTCTTTGGAAAACGATGT+TGG | - | chr5_1:28567068-28567087 | None:intergenic | 35.0% |
GAGTATTTGAATGGAAAGGA+TGG | + | chr5_1:28567083-28567102 | Msa0726900:CDS | 35.0% | |
! | TTTAATACCTTGAAAGTGCG+CGG | - | chr5_1:28567324-28567343 | None:intergenic | 35.0% |
CAATGTAACAGATGATTCCT+AGG | + | chr5_1:28566087-28566106 | Msa0726900:intron | 35.0% | |
ATCACCATTTGGTAGAACTA+GGG | - | chr5_1:28566156-28566175 | None:intergenic | 35.0% | |
TATCACCATTTGGTAGAACT+AGG | - | chr5_1:28566157-28566176 | None:intergenic | 35.0% | |
ACTTCCCATTTATCACCATT+TGG | - | chr5_1:28566167-28566186 | None:intergenic | 35.0% | |
!!! | CATTTTGAAACACAACGTCA+TGG | - | chr5_1:28566208-28566227 | None:intergenic | 35.0% |
CATGACGTTGTGTTTCAAAA+TGG | + | chr5_1:28566206-28566225 | Msa0726900:CDS | 35.0% | |
ACGTTGTGTTTCAAAATGGT+TGG | + | chr5_1:28566210-28566229 | Msa0726900:CDS | 35.0% | |
CGTTGTGTTTCAAAATGGTT+GGG | + | chr5_1:28566211-28566230 | Msa0726900:CDS | 35.0% | |
!! | GATATTTGACAAAAGCGCTT+TGG | + | chr5_1:28566316-28566335 | Msa0726900:CDS | 35.0% |
!! | CTGGTTTTCATTCTTTTCTG+AGG | - | chr5_1:28566488-28566507 | None:intergenic | 35.0% |
AGATACCATATGTTCAAGGT+AGG | - | chr5_1:28566816-28566835 | None:intergenic | 35.0% | |
! | TACTCTTTGGAAAACGATGT+TGG | - | chr5_1:28567068-28567087 | None:intergenic | 35.0% |
GAGTATTTGAATGGAAAGGA+TGG | + | chr5_1:28567083-28567102 | Msa0726900:CDS | 35.0% | |
! | TTTAATACCTTGAAAGTGCG+CGG | - | chr5_1:28567324-28567343 | None:intergenic | 35.0% |
TGGAACTGATGAACAACACT+CGG | - | chr5_1:28565872-28565891 | None:intergenic | 40.0% | |
TTGGTAGAACTAGGGTTACT+GGG | - | chr5_1:28566148-28566167 | None:intergenic | 40.0% | |
TTTGGTAGAACTAGGGTTAC+TGG | - | chr5_1:28566149-28566168 | None:intergenic | 40.0% | |
!! | GTAACCCTAGTTCTACCAAA+TGG | + | chr5_1:28566149-28566168 | Msa0726900:CDS | 40.0% |
!! | TGACAAAAGCGCTTTGGAAA+TGG | + | chr5_1:28566322-28566341 | Msa0726900:CDS | 40.0% |
!! | GCGCTTTGGAAATGGATTAT+TGG | + | chr5_1:28566330-28566349 | Msa0726900:CDS | 40.0% |
CATGAAGATGCTGAAAAGAG+TGG | + | chr5_1:28566398-28566417 | Msa0726900:CDS | 40.0% | |
!!! | TTCATTCTTTTCTGAGGTCG+AGG | - | chr5_1:28566482-28566501 | None:intergenic | 40.0% |
GCGAATGAAAAAGGGGTTAT+CGG | - | chr5_1:28566780-28566799 | None:intergenic | 40.0% | |
TCCATCCTACCTTGAACATA+TGG | + | chr5_1:28566808-28566827 | Msa0726900:CDS | 40.0% | |
ACCATATGTTCAAGGTAGGA+TGG | - | chr5_1:28566812-28566831 | None:intergenic | 40.0% | |
!! | TTGGTGATGAGGATAAGACT+TGG | + | chr5_1:28567123-28567142 | Msa0726900:CDS | 40.0% |
AGTTATGAGTGCTCGATTAG+TGG | - | chr5_1:28567174-28567193 | None:intergenic | 40.0% | |
AATCGAGCACTCATAACTTC+TGG | + | chr5_1:28567176-28567195 | Msa0726900:CDS | 40.0% | |
TGGTTGGAGACAAATTGTTG+AGG | + | chr5_1:28567196-28567215 | Msa0726900:CDS | 40.0% | |
TGGAACTGATGAACAACACT+CGG | - | chr5_1:28565872-28565891 | None:intergenic | 40.0% | |
TTGGTAGAACTAGGGTTACT+GGG | - | chr5_1:28566148-28566167 | None:intergenic | 40.0% | |
TTTGGTAGAACTAGGGTTAC+TGG | - | chr5_1:28566149-28566168 | None:intergenic | 40.0% | |
!! | GTAACCCTAGTTCTACCAAA+TGG | + | chr5_1:28566149-28566168 | Msa0726900:CDS | 40.0% |
!! | TGACAAAAGCGCTTTGGAAA+TGG | + | chr5_1:28566322-28566341 | Msa0726900:CDS | 40.0% |
!! | GCGCTTTGGAAATGGATTAT+TGG | + | chr5_1:28566330-28566349 | Msa0726900:CDS | 40.0% |
CATGAAGATGCTGAAAAGAG+TGG | + | chr5_1:28566398-28566417 | Msa0726900:CDS | 40.0% | |
!!! | TTCATTCTTTTCTGAGGTCG+AGG | - | chr5_1:28566482-28566501 | None:intergenic | 40.0% |
GCGAATGAAAAAGGGGTTAT+CGG | - | chr5_1:28566780-28566799 | None:intergenic | 40.0% | |
TCCATCCTACCTTGAACATA+TGG | + | chr5_1:28566808-28566827 | Msa0726900:CDS | 40.0% | |
ACCATATGTTCAAGGTAGGA+TGG | - | chr5_1:28566812-28566831 | None:intergenic | 40.0% | |
!! | TTGGTGATGAGGATAAGACT+TGG | + | chr5_1:28567123-28567142 | Msa0726900:CDS | 40.0% |
AGTTATGAGTGCTCGATTAG+TGG | - | chr5_1:28567174-28567193 | None:intergenic | 40.0% | |
AATCGAGCACTCATAACTTC+TGG | + | chr5_1:28567176-28567195 | Msa0726900:CDS | 40.0% | |
TGGTTGGAGACAAATTGTTG+AGG | + | chr5_1:28567196-28567215 | Msa0726900:CDS | 40.0% | |
!! | TCAACTTGATCTCTAGGGCT+TGG | - | chr5_1:28566362-28566381 | None:intergenic | 45.0% |
TGCAACGGGCGAATGAAAAA+GGG | - | chr5_1:28566788-28566807 | None:intergenic | 45.0% | |
ATGCAACGGGCGAATGAAAA+AGG | - | chr5_1:28566789-28566808 | None:intergenic | 45.0% | |
TCAAGGTAGGATGGATGCAA+CGG | - | chr5_1:28566803-28566822 | None:intergenic | 45.0% | |
ATCCTCATCACCAAACACCA+CGG | - | chr5_1:28567117-28567136 | None:intergenic | 45.0% | |
GAGCACTCATAACTTCTGGT+TGG | + | chr5_1:28567180-28567199 | Msa0726900:CDS | 45.0% | |
!! | TCAACTTGATCTCTAGGGCT+TGG | - | chr5_1:28566362-28566381 | None:intergenic | 45.0% |
TGCAACGGGCGAATGAAAAA+GGG | - | chr5_1:28566788-28566807 | None:intergenic | 45.0% | |
ATGCAACGGGCGAATGAAAA+AGG | - | chr5_1:28566789-28566808 | None:intergenic | 45.0% | |
TCAAGGTAGGATGGATGCAA+CGG | - | chr5_1:28566803-28566822 | None:intergenic | 45.0% | |
ATCCTCATCACCAAACACCA+CGG | - | chr5_1:28567117-28567136 | None:intergenic | 45.0% | |
GAGCACTCATAACTTCTGGT+TGG | + | chr5_1:28567180-28567199 | Msa0726900:CDS | 45.0% | |
!! | CCTTTGAGATGGACCATCAC+TGG | - | chr5_1:28566507-28566526 | None:intergenic | 50.0% |
CCAGTGATGGTCCATCTCAA+AGG | + | chr5_1:28566504-28566523 | Msa0726900:intron | 50.0% | |
GCAACGGGCGAATGAAAAAG+GGG | - | chr5_1:28566787-28566806 | None:intergenic | 50.0% | |
CAAGGTAGGATGGATGCAAC+GGG | - | chr5_1:28566802-28566821 | None:intergenic | 50.0% | |
AAAGGATGGGATTGCAACCG+TGG | + | chr5_1:28567097-28567116 | Msa0726900:CDS | 50.0% | |
!! | AACCGTGGTGTTTGGTGATG+AGG | + | chr5_1:28567112-28567131 | Msa0726900:CDS | 50.0% |
!! | CCTTTGAGATGGACCATCAC+TGG | - | chr5_1:28566507-28566526 | None:intergenic | 50.0% |
CCAGTGATGGTCCATCTCAA+AGG | + | chr5_1:28566504-28566523 | Msa0726900:intron | 50.0% | |
GCAACGGGCGAATGAAAAAG+GGG | - | chr5_1:28566787-28566806 | None:intergenic | 50.0% | |
CAAGGTAGGATGGATGCAAC+GGG | - | chr5_1:28566802-28566821 | None:intergenic | 50.0% | |
AAAGGATGGGATTGCAACCG+TGG | + | chr5_1:28567097-28567116 | Msa0726900:CDS | 50.0% | |
!! | AACCGTGGTGTTTGGTGATG+AGG | + | chr5_1:28567112-28567131 | Msa0726900:CDS | 50.0% |
GGGATTGCAACCGTGGTGTT+TGG | + | chr5_1:28567104-28567123 | Msa0726900:CDS | 55.0% | |
CGCGGAGCAAGATTGATCAC+TGG | - | chr5_1:28567306-28567325 | None:intergenic | 55.0% | |
TCTTGCTCCGCGCACTTTCA+AGG | + | chr5_1:28567314-28567333 | Msa0726900:CDS | 55.0% | |
GGGATTGCAACCGTGGTGTT+TGG | + | chr5_1:28567104-28567123 | Msa0726900:CDS | 55.0% | |
CGCGGAGCAAGATTGATCAC+TGG | - | chr5_1:28567306-28567325 | None:intergenic | 55.0% | |
TCTTGCTCCGCGCACTTTCA+AGG | + | chr5_1:28567314-28567333 | Msa0726900:CDS | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 28565860 | 28567346 | 28565860 | ID=Msa0726900;Name=Msa0726900 |
chr5_1 | mRNA | 28565860 | 28567346 | 28565860 | ID=Msa0726900-mRNA-1;Parent=Msa0726900;Name=Msa0726900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|317 |
chr5_1 | exon | 28565860 | 28565949 | 28565860 | ID=Msa0726900-mRNA-1:exon:9885;Parent=Msa0726900-mRNA-1 |
chr5_1 | exon | 28566098 | 28566512 | 28566098 | ID=Msa0726900-mRNA-1:exon:9886;Parent=Msa0726900-mRNA-1 |
chr5_1 | exon | 28566669 | 28566829 | 28566669 | ID=Msa0726900-mRNA-1:exon:9887;Parent=Msa0726900-mRNA-1 |
chr5_1 | exon | 28567059 | 28567346 | 28567059 | ID=Msa0726900-mRNA-1:exon:9888;Parent=Msa0726900-mRNA-1 |
chr5_1 | CDS | 28565860 | 28565949 | 28565860 | ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1 |
chr5_1 | CDS | 28566098 | 28566512 | 28566098 | ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1 |
chr5_1 | CDS | 28566669 | 28566829 | 28566669 | ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1 |
chr5_1 | CDS | 28567059 | 28567346 | 28567059 | ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1 |
Gene Sequence |
Protein sequence |