AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0726900


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726900 MtrunA17_Chr5g0419201 88.136 177 21 0 1 177 1 177 7.71e-114 327
Msa0726900 MtrunA17_Chr5g0419211 88.421 95 11 0 223 317 10 104 3.58e-55 175
Msa0726900 MtrunA17_Chr3g0131891 33.113 302 179 8 16 307 19 307 3.93e-44 154
Msa0726900 MtrunA17_Chr7g0233561 31.715 309 182 9 16 306 18 315 1.08e-42 150
Msa0726900 MtrunA17_Chr8g0390841 27.928 333 188 8 2 307 28 335 5.69e-41 149
Msa0726900 MtrunA17_Chr1g0208771 29.642 307 166 8 32 310 13 297 1.10e-38 142
Msa0726900 MtrunA17_Chr7g0233541 30.233 301 180 7 31 311 1 291 4.25e-38 137
Msa0726900 MtrunA17_Chr1g0163251 32.353 306 169 9 25 317 14 294 5.84e-38 139
Msa0726900 MtrunA17_Chr1g0163181 31.034 290 187 5 25 307 14 297 1.02e-37 139
Msa0726900 MtrunA17_Chr1g0163261 31.153 321 182 10 10 316 3 298 1.16e-37 135
Msa0726900 MtrunA17_Chr7g0233531 32.990 291 168 8 31 311 1 274 1.39e-37 135
Msa0726900 MtrunA17_Chr7g0233521 30.928 291 174 9 31 311 1 274 9.81e-36 130
Msa0726900 MtrunA17_Chr1g0163221 30.097 309 191 10 16 315 11 303 1.53e-33 126
Msa0726900 MtrunA17_Chr4g0067431 28.107 338 206 11 1 315 1 324 2.51e-33 125
Msa0726900 MtrunA17_Chr3g0103191 29.572 257 161 8 16 269 12 251 1.36e-32 121
Msa0726900 MtrunA17_Chr3g0103181 28.322 286 186 5 16 301 12 278 3.32e-32 120
Msa0726900 MtrunA17_Chr1g0163071 28.254 315 180 8 31 315 1 299 1.04e-31 120
Msa0726900 MtrunA17_Chr3g0103171 29.391 279 168 6 32 301 6 264 1.05e-31 119
Msa0726900 MtrunA17_Chr1g0163201 28.276 290 175 5 32 307 19 289 6.56e-31 120
Msa0726900 MtrunA17_Chr1g0163231 29.605 304 179 8 10 304 3 280 1.31e-30 117
Msa0726900 MtrunA17_Chr7g0233571 34.862 218 118 6 16 220 10 216 2.26e-30 114
Msa0726900 MtrunA17_Chr1g0171611 29.236 301 172 10 10 304 3 268 1.81e-28 111
Msa0726900 MtrunA17_Chr3g0077411 29.333 300 162 8 16 306 262 520 1.95e-28 114
Msa0726900 MtrunA17_Chr3g0077411 32.639 144 94 3 2 144 12 153 8.12e-18 84.0
Msa0726900 MtrunA17_Chr1g0163131 29.934 304 181 11 16 302 18 306 1.91e-26 106
Msa0726900 MtrunA17_Chr3g0077451 26.882 279 151 8 30 306 10 237 3.98e-26 103
Msa0726900 MtrunA17_Chr1g0163101 38.806 134 76 3 16 149 17 144 3.26e-24 97.1
Msa0726900 MtrunA17_Chr3g0103151 34.395 157 85 4 16 165 12 157 4.49e-24 96.3
Msa0726900 MtrunA17_Chr5g0429931 25.271 277 163 7 32 306 11 245 1.81e-22 94.4
Msa0726900 MtrunA17_Chr3g0103201 27.426 237 142 8 74 301 4 219 7.84e-22 91.7
Msa0726900 MtrunA17_Chr3g0077461 33.562 146 96 1 2 147 223 367 2.26e-21 94.0
Msa0726900 MtrunA17_Chr3g0077461 33.010 103 68 1 32 134 23 124 1.98e-15 76.6
Msa0726900 MtrunA17_Chr1g0154131 23.711 291 201 7 27 306 193 473 4.66e-20 90.5
Msa0726900 MtrunA17_Chr6g0476181 37.681 138 72 4 31 168 1 124 1.29e-19 84.3
Msa0726900 MtrunA17_Chr1g0162441 31.667 180 110 3 16 195 7 173 1.67e-19 88.6
Msa0726900 MtrunA17_Chr1g0154111 23.353 334 205 7 27 311 37 368 2.27e-19 88.6
Msa0726900 MtrunA17_Chr1g0154161 25.352 284 184 9 27 301 41 305 2.32e-19 87.0
Msa0726900 MtrunA17_Chr1g0163141 35.664 143 83 4 28 170 7 140 3.02e-19 84.0
Msa0726900 MtrunA17_Chr1g0163121 40.000 120 65 4 27 146 6 118 3.48e-19 82.4
Msa0726900 MtrunA17_Chr1g0163241 30.864 162 97 4 7 168 6 152 1.03e-18 82.0
Msa0726900 MtrunA17_Chr1g0162161 36.134 119 69 3 31 149 3 114 2.32e-18 80.9
Msa0726900 MtrunA17_Chr4g0033961 33.103 145 96 1 13 157 3 146 3.11e-18 84.7
Msa0726900 MtrunA17_Chr6g0467351 37.391 115 70 2 1 114 1 114 6.29e-18 81.3
Msa0726900 MtrunA17_Chr1g0163081 38.793 116 64 4 31 146 5 113 6.47e-18 79.3
Msa0726900 MtrunA17_Chr1g0162411 38.776 98 60 0 16 113 7 104 1.32e-17 83.2
Msa0726900 MtrunA17_Chr1g0163191 37.624 101 61 1 25 125 14 112 4.67e-17 77.4
Msa0726900 MtrunA17_Chr1g0162151 40.217 92 54 1 224 315 41 131 5.74e-17 78.6
Msa0726900 MtrunA17_Chr4g0009491 25.431 232 134 5 9 240 218 410 6.98e-17 80.9
Msa0726900 MtrunA17_Chr4g0009491 25.287 261 121 8 30 284 11 203 2.61e-15 76.3
Msa0726900 MtrunA17_Chr1g0163061 38.000 100 61 1 16 114 15 114 9.80e-17 78.6
Msa0726900 MtrunA17_Chr3g0077361 33.600 125 81 2 13 136 37 160 1.09e-16 80.5
Msa0726900 MtrunA17_Chr3g0077381 37.647 85 53 0 30 114 34 118 2.31e-15 76.3
Msa0726900 MtrunA17_Chr3g0077381 33.333 108 71 1 20 127 251 357 1.94e-14 73.6
Msa0726900 MtrunA17_Chr1g0163091 35.965 114 70 2 204 315 19 131 2.76e-15 72.4
Msa0726900 MtrunA17_Chr1g0163161 40.777 103 55 4 44 146 1 97 4.04e-15 71.2
Msa0726900 MtrunA17_Chr1g0163111 33.654 104 66 2 205 306 12 114 3.15e-13 68.2
Msa0726900 MtrunA17_Chr1g0154101 38.750 80 49 0 27 106 193 272 4.88e-12 66.6
Msa0726900 MtrunA17_Chr1g0154101 33.333 90 60 0 16 105 25 114 8.17e-11 63.2
Msa0726900 MtrunA17_Chr1g0154211 34.444 90 59 0 17 106 23 112 7.09e-12 65.9
Msa0726900 MtrunA17_Chr1g0154171 33.333 81 54 0 27 107 33 113 7.67e-11 62.4
Msa0726900 MtrunA17_Chr6g0476171 29.851 134 90 3 185 314 13 146 8.57e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0726900 AT3G18990.2 28.571 343 184 10 16 306 6 339 1.21e-32 124
Msa0726900 AT3G18990.1 28.280 343 185 10 16 306 6 339 3.93e-32 122
Msa0726900 AT4G01580.1 38.095 147 75 4 16 161 30 161 6.50e-20 86.3
Msa0726900 AT3G18960.2 41.414 99 58 0 16 114 30 128 7.38e-18 80.5
Msa0726900 AT3G18960.1 41.414 99 58 0 16 114 30 128 9.99e-18 80.5
Msa0726900 AT1G49475.1 35.669 157 88 5 16 166 34 183 2.84e-17 79.0
Msa0726900 AT4G33280.1 22.603 292 205 7 30 306 37 322 1.03e-15 77.0
Msa0726900 AT3G18960.3 42.169 83 48 0 32 114 9 91 9.39e-14 68.9

Find 57 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTACCAAATGGTGATAAA+TGG 0.158299 5_1:+28566159 Msa0726900:CDS
AGCATTGAACTTGAAGTTTA+AGG 0.206027 5_1:-28567147 None:intergenic
CTTTCCATTCAAATACTCTT+TGG 0.236141 5_1:-28567078 None:intergenic
GTGATAAATGGGAAGTAAAT+TGG 0.244779 5_1:+28566171 Msa0726900:CDS
GCGCTTTGGAAATGGATTAT+TGG 0.263628 5_1:+28566330 Msa0726900:CDS
AGACGATTATATTGAGATTT+CGG 0.264534 5_1:+28566427 Msa0726900:CDS
ATGCAACGGGCGAATGAAAA+AGG 0.275521 5_1:-28566786 None:intergenic
TTTGGTAGAACTAGGGTTAC+TGG 0.318076 5_1:-28566146 None:intergenic
CATGACGTTGTGTTTCAAAA+TGG 0.334132 5_1:+28566206 Msa0726900:CDS
AAACACTACAAAATACTAAA+AGG 0.340468 5_1:+28566735 Msa0726900:CDS
TTTCTTTCAACTTGATCTCT+AGG 0.366619 5_1:-28566365 None:intergenic
CATCAAATGAAGCTATGAAT+TGG 0.370847 5_1:+28566708 Msa0726900:CDS
TCAACTTGATCTCTAGGGCT+TGG 0.372702 5_1:-28566359 None:intergenic
GATATTTGACAAAAGCGCTT+TGG 0.378554 5_1:+28566316 Msa0726900:CDS
CAACACTATTCAATGAGTTA+TGG 0.379815 5_1:+28566245 Msa0726900:CDS
TGACAAAAGCGCTTTGGAAA+TGG 0.381408 5_1:+28566322 Msa0726900:CDS
TCTTGCTCCGCGCACTTTCA+AGG 0.393318 5_1:+28567314 Msa0726900:CDS
AACACTATTCAATGAGTTAT+GGG 0.394195 5_1:+28566246 Msa0726900:CDS
GAGGAATATAATTTCAAAGT+TGG 0.395164 5_1:+28567215 Msa0726900:CDS
TTTACAATTTCAGGAGGTAA+TGG 0.402632 5_1:+28566656 Msa0726900:intron
CCTTTGAGATGGACCATCAC+TGG 0.419968 5_1:-28566504 None:intergenic
TCCATCCTACCTTGAACATA+TGG 0.422875 5_1:+28566808 Msa0726900:CDS
ACTTCCCATTTATCACCATT+TGG 0.427050 5_1:-28566164 None:intergenic
GGGATTGCAACCGTGGTGTT+TGG 0.435175 5_1:+28567104 Msa0726900:CDS
AGTTATGAGTGCTCGATTAG+TGG 0.441965 5_1:-28567171 None:intergenic
TCTACCAAATGGTGATAAAT+GGG 0.445463 5_1:+28566160 Msa0726900:CDS
TTCTTTCAACTTGATCTCTA+GGG 0.452245 5_1:-28566364 None:intergenic
GAGTATTTGAATGGAAAGGA+TGG 0.463140 5_1:+28567083 Msa0726900:CDS
AATCGAGCACTCATAACTTC+TGG 0.465532 5_1:+28567176 Msa0726900:CDS
CGTTGTGTTTCAAAATGGTT+GGG 0.465755 5_1:+28566211 Msa0726900:CDS
CAATGTAACAGATGATTCCT+AGG 0.470035 5_1:+28566087 Msa0726900:intron
TATCACCATTTGGTAGAACT+AGG 0.471668 5_1:-28566154 None:intergenic
GTTATCGGAATGAAAATTCA+TGG 0.486333 5_1:-28566762 None:intergenic
TATTTCTTCACAAAACTCCT+AGG 0.496072 5_1:-28566104 None:intergenic
CAAAGAGTATTTGAATGGAA+AGG 0.500378 5_1:+28567079 Msa0726900:CDS
TACTCTTTGGAAAACGATGT+TGG 0.517680 5_1:-28567065 None:intergenic
TTGGTAGAACTAGGGTTACT+GGG 0.523068 5_1:-28566145 None:intergenic
CAAGGTAGGATGGATGCAAC+GGG 0.527483 5_1:-28566799 None:intergenic
ATCACCATTTGGTAGAACTA+GGG 0.529841 5_1:-28566153 None:intergenic
ACCATATGTTCAAGGTAGGA+TGG 0.542632 5_1:-28566809 None:intergenic
GTAACCCTAGTTCTACCAAA+TGG 0.543476 5_1:+28566149 Msa0726900:CDS
ATATAGATACCATATGTTCA+AGG 0.544245 5_1:-28566817 None:intergenic
AGTATTTGAATGGAAAGGAT+GGG 0.554047 5_1:+28567084 Msa0726900:CDS
CGCGGAGCAAGATTGATCAC+TGG 0.555616 5_1:-28567303 None:intergenic
ACGTTGTGTTTCAAAATGGT+TGG 0.559115 5_1:+28566210 Msa0726900:CDS
AAAAGAATGAAAACCAGTGA+TGG 0.566067 5_1:+28566491 Msa0726900:CDS
AACCGTGGTGTTTGGTGATG+AGG 0.573245 5_1:+28567112 Msa0726900:CDS
GAGCACTCATAACTTCTGGT+TGG 0.583650 5_1:+28567180 Msa0726900:CDS
TGGTTGGAGACAAATTGTTG+AGG 0.606845 5_1:+28567196 Msa0726900:CDS
TCAAGGTAGGATGGATGCAA+CGG 0.607292 5_1:-28566800 None:intergenic
AGATACCATATGTTCAAGGT+AGG 0.608884 5_1:-28566813 None:intergenic
TGGAACTGATGAACAACACT+CGG 0.613370 5_1:-28565869 None:intergenic
TTTAATACCTTGAAAGTGCG+CGG 0.633523 5_1:-28567321 None:intergenic
CATGAAGATGCTGAAAAGAG+TGG 0.644431 5_1:+28566398 Msa0726900:CDS
AAAGGATGGGATTGCAACCG+TGG 0.682554 5_1:+28567097 Msa0726900:CDS
ATCCTCATCACCAAACACCA+CGG 0.689007 5_1:-28567114 None:intergenic
TTGGTGATGAGGATAAGACT+TGG 0.724527 5_1:+28567123 Msa0726900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTAATTAAACTAAAAAGAA+TGG - chr5_1:28566932-28566951 None:intergenic 10.0%
!! ATTAATTAAACTAAAAAGAA+TGG - chr5_1:28566932-28566951 None:intergenic 10.0%
!! AAAGTAGAAAACTAAATAAA+AGG - chr5_1:28565968-28565987 None:intergenic 15.0%
!!! AGTTTTCTACTTTAATATTT+TGG + chr5_1:28565975-28565994 Msa0726900:intron 15.0%
!!! AGTATTTTTTTTACAATTTC+AGG + chr5_1:28566647-28566666 Msa0726900:intron 15.0%
!!! CTTTTTAGTTTAATTAATGA+AGG + chr5_1:28566934-28566953 Msa0726900:intron 15.0%
!! AGAAAAAAATATCAAGATTT+AGG - chr5_1:28567014-28567033 None:intergenic 15.0%
!! AAAGTAGAAAACTAAATAAA+AGG - chr5_1:28565968-28565987 None:intergenic 15.0%
!!! AGTTTTCTACTTTAATATTT+TGG + chr5_1:28565975-28565994 Msa0726900:intron 15.0%
!!! AGTATTTTTTTTACAATTTC+AGG + chr5_1:28566647-28566666 Msa0726900:intron 15.0%
!!! CTTTTTAGTTTAATTAATGA+AGG + chr5_1:28566934-28566953 Msa0726900:intron 15.0%
!! AGAAAAAAATATCAAGATTT+AGG - chr5_1:28567014-28567033 None:intergenic 15.0%
!!! TACAATCTCTTTCTTTTTAA+GGG - chr5_1:28565933-28565952 None:intergenic 20.0%
!!! TTACAATCTCTTTCTTTTTA+AGG - chr5_1:28565934-28565953 None:intergenic 20.0%
!! TATGAATGTGTCTAAATAAA+AGG - chr5_1:28566007-28566026 None:intergenic 20.0%
!!! CATTAATTTTTTCCTTCTTT+AGG - chr5_1:28566535-28566554 None:intergenic 20.0%
!! AAAGAAGGAAAAAATTAATG+TGG + chr5_1:28566535-28566554 Msa0726900:intron 20.0%
!! AATGTGGATAAAAAAATCAA+AGG + chr5_1:28566551-28566570 Msa0726900:intron 20.0%
!! GTATCAATTTAACATTATGA+TGG - chr5_1:28566615-28566634 None:intergenic 20.0%
!!! ATTTTTTTTACAATTTCAGG+AGG + chr5_1:28566650-28566669 Msa0726900:intron 20.0%
!! AAACACTACAAAATACTAAA+AGG + chr5_1:28566735-28566754 Msa0726900:CDS 20.0%
!! TTAAACTAGATAGTAAAATG+TGG - chr5_1:28566868-28566887 None:intergenic 20.0%
!! TTAAACTAAAAAGAATGGAA+AGG - chr5_1:28566927-28566946 None:intergenic 20.0%
!! TCTTGTGTTTAAATGATAAT+TGG + chr5_1:28567031-28567050 Msa0726900:intron 20.0%
!!! TACAATCTCTTTCTTTTTAA+GGG - chr5_1:28565933-28565952 None:intergenic 20.0%
!!! TTACAATCTCTTTCTTTTTA+AGG - chr5_1:28565934-28565953 None:intergenic 20.0%
!! TATGAATGTGTCTAAATAAA+AGG - chr5_1:28566007-28566026 None:intergenic 20.0%
!!! CATTAATTTTTTCCTTCTTT+AGG - chr5_1:28566535-28566554 None:intergenic 20.0%
!! AAAGAAGGAAAAAATTAATG+TGG + chr5_1:28566535-28566554 Msa0726900:intron 20.0%
!! AATGTGGATAAAAAAATCAA+AGG + chr5_1:28566551-28566570 Msa0726900:intron 20.0%
!! GTATCAATTTAACATTATGA+TGG - chr5_1:28566615-28566634 None:intergenic 20.0%
!!! ATTTTTTTTACAATTTCAGG+AGG + chr5_1:28566650-28566669 Msa0726900:intron 20.0%
!! AAACACTACAAAATACTAAA+AGG + chr5_1:28566735-28566754 Msa0726900:CDS 20.0%
!! TTAAACTAGATAGTAAAATG+TGG - chr5_1:28566868-28566887 None:intergenic 20.0%
!! TTAAACTAAAAAGAATGGAA+AGG - chr5_1:28566927-28566946 None:intergenic 20.0%
!! TCTTGTGTTTAAATGATAAT+TGG + chr5_1:28567031-28567050 Msa0726900:intron 20.0%
! TGAAAAAACATTGTGACTTA+TGG - chr5_1:28565892-28565911 None:intergenic 25.0%
!!! TTTCTTTTTAGTGCAATTGT+TGG + chr5_1:28566029-28566048 Msa0726900:intron 25.0%
! AACACTATTCAATGAGTTAT+GGG + chr5_1:28566246-28566265 Msa0726900:CDS 25.0%
!!! TAGTTTTTAGACTTGAAACA+AGG + chr5_1:28566276-28566295 Msa0726900:CDS 25.0%
! AGACGATTATATTGAGATTT+CGG + chr5_1:28566427-28566446 Msa0726900:CDS 25.0%
! GAGGAGAATAATTAAAATGA+AGG - chr5_1:28566593-28566612 None:intergenic 25.0%
! TCAATTTAACATTATGATGG+AGG - chr5_1:28566612-28566631 None:intergenic 25.0%
! ATATAGATACCATATGTTCA+AGG - chr5_1:28566820-28566839 None:intergenic 25.0%
!! ATGTGGAAATTGATTCTAAA+AGG - chr5_1:28566851-28566870 None:intergenic 25.0%
!!! TTTTCCAAAGAGTATTTGAA+TGG + chr5_1:28567074-28567093 Msa0726900:CDS 25.0%
! GAGGAATATAATTTCAAAGT+TGG + chr5_1:28567215-28567234 Msa0726900:CDS 25.0%
! TGAAAAAACATTGTGACTTA+TGG - chr5_1:28565892-28565911 None:intergenic 25.0%
!!! TTTCTTTTTAGTGCAATTGT+TGG + chr5_1:28566029-28566048 Msa0726900:intron 25.0%
! AACACTATTCAATGAGTTAT+GGG + chr5_1:28566246-28566265 Msa0726900:CDS 25.0%
!!! TAGTTTTTAGACTTGAAACA+AGG + chr5_1:28566276-28566295 Msa0726900:CDS 25.0%
! AGACGATTATATTGAGATTT+CGG + chr5_1:28566427-28566446 Msa0726900:CDS 25.0%
! GAGGAGAATAATTAAAATGA+AGG - chr5_1:28566593-28566612 None:intergenic 25.0%
! TCAATTTAACATTATGATGG+AGG - chr5_1:28566612-28566631 None:intergenic 25.0%
! ATATAGATACCATATGTTCA+AGG - chr5_1:28566820-28566839 None:intergenic 25.0%
!! ATGTGGAAATTGATTCTAAA+AGG - chr5_1:28566851-28566870 None:intergenic 25.0%
!!! TTTTCCAAAGAGTATTTGAA+TGG + chr5_1:28567074-28567093 Msa0726900:CDS 25.0%
! GAGGAATATAATTTCAAAGT+TGG + chr5_1:28567215-28567234 Msa0726900:CDS 25.0%
TATTTCTTCACAAAACTCCT+AGG - chr5_1:28566107-28566126 None:intergenic 30.0%
!! AGGAGTTTTGTGAAGAAATA+TGG + chr5_1:28566107-28566126 Msa0726900:CDS 30.0%
!! GGAGTTTTGTGAAGAAATAT+GGG + chr5_1:28566108-28566127 Msa0726900:CDS 30.0%
TTCTACCAAATGGTGATAAA+TGG + chr5_1:28566159-28566178 Msa0726900:CDS 30.0%
TCTACCAAATGGTGATAAAT+GGG + chr5_1:28566160-28566179 Msa0726900:CDS 30.0%
GTGATAAATGGGAAGTAAAT+TGG + chr5_1:28566171-28566190 Msa0726900:CDS 30.0%
!!! ATTTTGAAACACAACGTCAT+GGG - chr5_1:28566207-28566226 None:intergenic 30.0%
CAACACTATTCAATGAGTTA+TGG + chr5_1:28566245-28566264 Msa0726900:CDS 30.0%
TTCTTTCAACTTGATCTCTA+GGG - chr5_1:28566367-28566386 None:intergenic 30.0%
TTTCTTTCAACTTGATCTCT+AGG - chr5_1:28566368-28566387 None:intergenic 30.0%
AAAAGAATGAAAACCAGTGA+TGG + chr5_1:28566491-28566510 Msa0726900:CDS 30.0%
!! TTTAGGTTTTTCCTTTGAGA+TGG - chr5_1:28566518-28566537 None:intergenic 30.0%
TCAAAGGAAAAACCTAAAGA+AGG + chr5_1:28566520-28566539 Msa0726900:intron 30.0%
TTTACAATTTCAGGAGGTAA+TGG + chr5_1:28566656-28566675 Msa0726900:intron 30.0%
CATCAAATGAAGCTATGAAT+TGG + chr5_1:28566708-28566727 Msa0726900:CDS 30.0%
GTTATCGGAATGAAAATTCA+TGG - chr5_1:28566765-28566784 None:intergenic 30.0%
CTTTCCATTCAAATACTCTT+TGG - chr5_1:28567081-28567100 None:intergenic 30.0%
!! CAAAGAGTATTTGAATGGAA+AGG + chr5_1:28567079-28567098 Msa0726900:CDS 30.0%
AGTATTTGAATGGAAAGGAT+GGG + chr5_1:28567084-28567103 Msa0726900:CDS 30.0%
! AGCATTGAACTTGAAGTTTA+AGG - chr5_1:28567150-28567169 None:intergenic 30.0%
TATTTCTTCACAAAACTCCT+AGG - chr5_1:28566107-28566126 None:intergenic 30.0%
!! AGGAGTTTTGTGAAGAAATA+TGG + chr5_1:28566107-28566126 Msa0726900:CDS 30.0%
!! GGAGTTTTGTGAAGAAATAT+GGG + chr5_1:28566108-28566127 Msa0726900:CDS 30.0%
TTCTACCAAATGGTGATAAA+TGG + chr5_1:28566159-28566178 Msa0726900:CDS 30.0%
TCTACCAAATGGTGATAAAT+GGG + chr5_1:28566160-28566179 Msa0726900:CDS 30.0%
GTGATAAATGGGAAGTAAAT+TGG + chr5_1:28566171-28566190 Msa0726900:CDS 30.0%
!!! ATTTTGAAACACAACGTCAT+GGG - chr5_1:28566207-28566226 None:intergenic 30.0%
CAACACTATTCAATGAGTTA+TGG + chr5_1:28566245-28566264 Msa0726900:CDS 30.0%
TTCTTTCAACTTGATCTCTA+GGG - chr5_1:28566367-28566386 None:intergenic 30.0%
TTTCTTTCAACTTGATCTCT+AGG - chr5_1:28566368-28566387 None:intergenic 30.0%
AAAAGAATGAAAACCAGTGA+TGG + chr5_1:28566491-28566510 Msa0726900:CDS 30.0%
!! TTTAGGTTTTTCCTTTGAGA+TGG - chr5_1:28566518-28566537 None:intergenic 30.0%
TCAAAGGAAAAACCTAAAGA+AGG + chr5_1:28566520-28566539 Msa0726900:intron 30.0%
TTTACAATTTCAGGAGGTAA+TGG + chr5_1:28566656-28566675 Msa0726900:intron 30.0%
CATCAAATGAAGCTATGAAT+TGG + chr5_1:28566708-28566727 Msa0726900:CDS 30.0%
GTTATCGGAATGAAAATTCA+TGG - chr5_1:28566765-28566784 None:intergenic 30.0%
CTTTCCATTCAAATACTCTT+TGG - chr5_1:28567081-28567100 None:intergenic 30.0%
!! CAAAGAGTATTTGAATGGAA+AGG + chr5_1:28567079-28567098 Msa0726900:CDS 30.0%
AGTATTTGAATGGAAAGGAT+GGG + chr5_1:28567084-28567103 Msa0726900:CDS 30.0%
! AGCATTGAACTTGAAGTTTA+AGG - chr5_1:28567150-28567169 None:intergenic 30.0%
CAATGTAACAGATGATTCCT+AGG + chr5_1:28566087-28566106 Msa0726900:intron 35.0%
ATCACCATTTGGTAGAACTA+GGG - chr5_1:28566156-28566175 None:intergenic 35.0%
TATCACCATTTGGTAGAACT+AGG - chr5_1:28566157-28566176 None:intergenic 35.0%
ACTTCCCATTTATCACCATT+TGG - chr5_1:28566167-28566186 None:intergenic 35.0%
!!! CATTTTGAAACACAACGTCA+TGG - chr5_1:28566208-28566227 None:intergenic 35.0%
CATGACGTTGTGTTTCAAAA+TGG + chr5_1:28566206-28566225 Msa0726900:CDS 35.0%
ACGTTGTGTTTCAAAATGGT+TGG + chr5_1:28566210-28566229 Msa0726900:CDS 35.0%
CGTTGTGTTTCAAAATGGTT+GGG + chr5_1:28566211-28566230 Msa0726900:CDS 35.0%
!! GATATTTGACAAAAGCGCTT+TGG + chr5_1:28566316-28566335 Msa0726900:CDS 35.0%
!! CTGGTTTTCATTCTTTTCTG+AGG - chr5_1:28566488-28566507 None:intergenic 35.0%
AGATACCATATGTTCAAGGT+AGG - chr5_1:28566816-28566835 None:intergenic 35.0%
! TACTCTTTGGAAAACGATGT+TGG - chr5_1:28567068-28567087 None:intergenic 35.0%
GAGTATTTGAATGGAAAGGA+TGG + chr5_1:28567083-28567102 Msa0726900:CDS 35.0%
! TTTAATACCTTGAAAGTGCG+CGG - chr5_1:28567324-28567343 None:intergenic 35.0%
CAATGTAACAGATGATTCCT+AGG + chr5_1:28566087-28566106 Msa0726900:intron 35.0%
ATCACCATTTGGTAGAACTA+GGG - chr5_1:28566156-28566175 None:intergenic 35.0%
TATCACCATTTGGTAGAACT+AGG - chr5_1:28566157-28566176 None:intergenic 35.0%
ACTTCCCATTTATCACCATT+TGG - chr5_1:28566167-28566186 None:intergenic 35.0%
!!! CATTTTGAAACACAACGTCA+TGG - chr5_1:28566208-28566227 None:intergenic 35.0%
CATGACGTTGTGTTTCAAAA+TGG + chr5_1:28566206-28566225 Msa0726900:CDS 35.0%
ACGTTGTGTTTCAAAATGGT+TGG + chr5_1:28566210-28566229 Msa0726900:CDS 35.0%
CGTTGTGTTTCAAAATGGTT+GGG + chr5_1:28566211-28566230 Msa0726900:CDS 35.0%
!! GATATTTGACAAAAGCGCTT+TGG + chr5_1:28566316-28566335 Msa0726900:CDS 35.0%
!! CTGGTTTTCATTCTTTTCTG+AGG - chr5_1:28566488-28566507 None:intergenic 35.0%
AGATACCATATGTTCAAGGT+AGG - chr5_1:28566816-28566835 None:intergenic 35.0%
! TACTCTTTGGAAAACGATGT+TGG - chr5_1:28567068-28567087 None:intergenic 35.0%
GAGTATTTGAATGGAAAGGA+TGG + chr5_1:28567083-28567102 Msa0726900:CDS 35.0%
! TTTAATACCTTGAAAGTGCG+CGG - chr5_1:28567324-28567343 None:intergenic 35.0%
TGGAACTGATGAACAACACT+CGG - chr5_1:28565872-28565891 None:intergenic 40.0%
TTGGTAGAACTAGGGTTACT+GGG - chr5_1:28566148-28566167 None:intergenic 40.0%
TTTGGTAGAACTAGGGTTAC+TGG - chr5_1:28566149-28566168 None:intergenic 40.0%
!! GTAACCCTAGTTCTACCAAA+TGG + chr5_1:28566149-28566168 Msa0726900:CDS 40.0%
!! TGACAAAAGCGCTTTGGAAA+TGG + chr5_1:28566322-28566341 Msa0726900:CDS 40.0%
!! GCGCTTTGGAAATGGATTAT+TGG + chr5_1:28566330-28566349 Msa0726900:CDS 40.0%
CATGAAGATGCTGAAAAGAG+TGG + chr5_1:28566398-28566417 Msa0726900:CDS 40.0%
!!! TTCATTCTTTTCTGAGGTCG+AGG - chr5_1:28566482-28566501 None:intergenic 40.0%
GCGAATGAAAAAGGGGTTAT+CGG - chr5_1:28566780-28566799 None:intergenic 40.0%
TCCATCCTACCTTGAACATA+TGG + chr5_1:28566808-28566827 Msa0726900:CDS 40.0%
ACCATATGTTCAAGGTAGGA+TGG - chr5_1:28566812-28566831 None:intergenic 40.0%
!! TTGGTGATGAGGATAAGACT+TGG + chr5_1:28567123-28567142 Msa0726900:CDS 40.0%
AGTTATGAGTGCTCGATTAG+TGG - chr5_1:28567174-28567193 None:intergenic 40.0%
AATCGAGCACTCATAACTTC+TGG + chr5_1:28567176-28567195 Msa0726900:CDS 40.0%
TGGTTGGAGACAAATTGTTG+AGG + chr5_1:28567196-28567215 Msa0726900:CDS 40.0%
TGGAACTGATGAACAACACT+CGG - chr5_1:28565872-28565891 None:intergenic 40.0%
TTGGTAGAACTAGGGTTACT+GGG - chr5_1:28566148-28566167 None:intergenic 40.0%
TTTGGTAGAACTAGGGTTAC+TGG - chr5_1:28566149-28566168 None:intergenic 40.0%
!! GTAACCCTAGTTCTACCAAA+TGG + chr5_1:28566149-28566168 Msa0726900:CDS 40.0%
!! TGACAAAAGCGCTTTGGAAA+TGG + chr5_1:28566322-28566341 Msa0726900:CDS 40.0%
!! GCGCTTTGGAAATGGATTAT+TGG + chr5_1:28566330-28566349 Msa0726900:CDS 40.0%
CATGAAGATGCTGAAAAGAG+TGG + chr5_1:28566398-28566417 Msa0726900:CDS 40.0%
!!! TTCATTCTTTTCTGAGGTCG+AGG - chr5_1:28566482-28566501 None:intergenic 40.0%
GCGAATGAAAAAGGGGTTAT+CGG - chr5_1:28566780-28566799 None:intergenic 40.0%
TCCATCCTACCTTGAACATA+TGG + chr5_1:28566808-28566827 Msa0726900:CDS 40.0%
ACCATATGTTCAAGGTAGGA+TGG - chr5_1:28566812-28566831 None:intergenic 40.0%
!! TTGGTGATGAGGATAAGACT+TGG + chr5_1:28567123-28567142 Msa0726900:CDS 40.0%
AGTTATGAGTGCTCGATTAG+TGG - chr5_1:28567174-28567193 None:intergenic 40.0%
AATCGAGCACTCATAACTTC+TGG + chr5_1:28567176-28567195 Msa0726900:CDS 40.0%
TGGTTGGAGACAAATTGTTG+AGG + chr5_1:28567196-28567215 Msa0726900:CDS 40.0%
!! TCAACTTGATCTCTAGGGCT+TGG - chr5_1:28566362-28566381 None:intergenic 45.0%
TGCAACGGGCGAATGAAAAA+GGG - chr5_1:28566788-28566807 None:intergenic 45.0%
ATGCAACGGGCGAATGAAAA+AGG - chr5_1:28566789-28566808 None:intergenic 45.0%
TCAAGGTAGGATGGATGCAA+CGG - chr5_1:28566803-28566822 None:intergenic 45.0%
ATCCTCATCACCAAACACCA+CGG - chr5_1:28567117-28567136 None:intergenic 45.0%
GAGCACTCATAACTTCTGGT+TGG + chr5_1:28567180-28567199 Msa0726900:CDS 45.0%
!! TCAACTTGATCTCTAGGGCT+TGG - chr5_1:28566362-28566381 None:intergenic 45.0%
TGCAACGGGCGAATGAAAAA+GGG - chr5_1:28566788-28566807 None:intergenic 45.0%
ATGCAACGGGCGAATGAAAA+AGG - chr5_1:28566789-28566808 None:intergenic 45.0%
TCAAGGTAGGATGGATGCAA+CGG - chr5_1:28566803-28566822 None:intergenic 45.0%
ATCCTCATCACCAAACACCA+CGG - chr5_1:28567117-28567136 None:intergenic 45.0%
GAGCACTCATAACTTCTGGT+TGG + chr5_1:28567180-28567199 Msa0726900:CDS 45.0%
!! CCTTTGAGATGGACCATCAC+TGG - chr5_1:28566507-28566526 None:intergenic 50.0%
CCAGTGATGGTCCATCTCAA+AGG + chr5_1:28566504-28566523 Msa0726900:intron 50.0%
GCAACGGGCGAATGAAAAAG+GGG - chr5_1:28566787-28566806 None:intergenic 50.0%
CAAGGTAGGATGGATGCAAC+GGG - chr5_1:28566802-28566821 None:intergenic 50.0%
AAAGGATGGGATTGCAACCG+TGG + chr5_1:28567097-28567116 Msa0726900:CDS 50.0%
!! AACCGTGGTGTTTGGTGATG+AGG + chr5_1:28567112-28567131 Msa0726900:CDS 50.0%
!! CCTTTGAGATGGACCATCAC+TGG - chr5_1:28566507-28566526 None:intergenic 50.0%
CCAGTGATGGTCCATCTCAA+AGG + chr5_1:28566504-28566523 Msa0726900:intron 50.0%
GCAACGGGCGAATGAAAAAG+GGG - chr5_1:28566787-28566806 None:intergenic 50.0%
CAAGGTAGGATGGATGCAAC+GGG - chr5_1:28566802-28566821 None:intergenic 50.0%
AAAGGATGGGATTGCAACCG+TGG + chr5_1:28567097-28567116 Msa0726900:CDS 50.0%
!! AACCGTGGTGTTTGGTGATG+AGG + chr5_1:28567112-28567131 Msa0726900:CDS 50.0%
GGGATTGCAACCGTGGTGTT+TGG + chr5_1:28567104-28567123 Msa0726900:CDS 55.0%
CGCGGAGCAAGATTGATCAC+TGG - chr5_1:28567306-28567325 None:intergenic 55.0%
TCTTGCTCCGCGCACTTTCA+AGG + chr5_1:28567314-28567333 Msa0726900:CDS 55.0%
GGGATTGCAACCGTGGTGTT+TGG + chr5_1:28567104-28567123 Msa0726900:CDS 55.0%
CGCGGAGCAAGATTGATCAC+TGG - chr5_1:28567306-28567325 None:intergenic 55.0%
TCTTGCTCCGCGCACTTTCA+AGG + chr5_1:28567314-28567333 Msa0726900:CDS 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 28565860 28567346 28565860 ID=Msa0726900;Name=Msa0726900
chr5_1 mRNA 28565860 28567346 28565860 ID=Msa0726900-mRNA-1;Parent=Msa0726900;Name=Msa0726900-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|4|0|317
chr5_1 exon 28565860 28565949 28565860 ID=Msa0726900-mRNA-1:exon:9885;Parent=Msa0726900-mRNA-1
chr5_1 exon 28566098 28566512 28566098 ID=Msa0726900-mRNA-1:exon:9886;Parent=Msa0726900-mRNA-1
chr5_1 exon 28566669 28566829 28566669 ID=Msa0726900-mRNA-1:exon:9887;Parent=Msa0726900-mRNA-1
chr5_1 exon 28567059 28567346 28567059 ID=Msa0726900-mRNA-1:exon:9888;Parent=Msa0726900-mRNA-1
chr5_1 CDS 28565860 28565949 28565860 ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1
chr5_1 CDS 28566098 28566512 28566098 ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1
chr5_1 CDS 28566669 28566829 28566669 ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1
chr5_1 CDS 28567059 28567346 28567059 ID=Msa0726900-mRNA-1:cds;Parent=Msa0726900-mRNA-1
Gene Sequence

>Msa0726900

ATGTCTTCTCCGAGTGTTGTTCATCAGTTCCATAAGTCACAATGTTTTTTCAAAGTCATCGTCGAGAAAACCCTTAAAAAGAAAGAGATTATGATTCCTAGGAGTTTTGTGAAGAAATATGGGAAAAAATTATCAAACCCAGTAACCCTAGTTCTACCAAATGGTGATAAATGGGAAGTAAATTGGATAAAACGTGCCCATGACGTTGTGTTTCAAAATGGTTGGGAAAAATTTGCACAACACTATTCAATGAGTTATGGGCATTTTTTAGTTTTTAGACTTGAAACAAGGTCTCAATTTCAAGTAATGATATTTGACAAAAGCGCTTTGGAAATGGATTATTGGAGTATACCAAGCCCTAGAGATCAAGTTGAAAGAAACATTCATCATCATGAAGATGCTGAAAAGAGTGGCGATAAAGACGATTATATTGAGATTTCGGATGAGAGTGAAATGCGAAGATCTTCATCACCTCGACCTCAGAAAAGAATGAAAACCAGTGATGGAGGTAATGGAGAAAATTTCTTCAAAGCAAAGAATGACTCATCAAATGAAGCTATGAATTGGAAAGAAACACTACAAAATACTAAAAGGAGAGCCATGAATTTTCATTCCGATAACCCCTTTTTCATTCGCCCGTTGCATCCATCCTACCTTGAACATATGTTTATACCAACATCGTTTTCCAAAGAGTATTTGAATGGAAAGGATGGGATTGCAACCGTGGTGTTTGGTGATGAGGATAAGACTTGGTCCTTAAACTTCAAGTTCAATGCTACCACTAATCGAGCACTCATAACTTCTGGTTGGAGACAAATTGTTGAGGAATATAATTTCAAAGTTGGTGACACTTGTGTGTTTGAGATGACTGATAGTACAAATATCTTATTTAAAGTCTATATTGTTCGAGCCAGTGATCAATCTTGCTCCGCGCACTTTCAAGGTATTAAATAA

Protein sequence

>Msa0726900

MSSPSVVHQFHKSQCFFKVIVEKTLKKKEIMIPRSFVKKYGKKLSNPVTLVLPNGDKWEVNWIKRAHDVVFQNGWEKFAQHYSMSYGHFLVFRLETRSQFQVMIFDKSALEMDYWSIPSPRDQVERNIHHHEDAEKSGDKDDYIEISDESEMRRSSSPRPQKRMKTSDGGNGENFFKAKNDSSNEAMNWKETLQNTKRRAMNFHSDNPFFIRPLHPSYLEHMFIPTSFSKEYLNGKDGIATVVFGDEDKTWSLNFKFNATTNRALITSGWRQIVEEYNFKVGDTCVFEMTDSTNILFKVYIVRASDQSCSAHFQGIK*