Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727730 | GAY34816.1 | 58.511 | 94 | 39 | 0 | 3 | 96 | 22 | 115 | 3.28e-27 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727730 | sp|Q9SCW4|HFB2A_ARATH | 64.706 | 51 | 18 | 0 | 3 | 53 | 32 | 82 | 2.09e-15 | 73.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727730 | A0A2H5N3L5 | 58.511 | 94 | 39 | 0 | 3 | 96 | 22 | 115 | 1.56e-27 | 114 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0727730 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727730 | MtrunA17_Chr2g0284481 | 38.462 | 143 | 46 | 2 | 3 | 103 | 24 | 166 | 3.01e-22 | 90.1 |
| Msa0727730 | MtrunA17_Chr5g0402291 | 41.111 | 90 | 46 | 1 | 3 | 92 | 18 | 100 | 1.40e-16 | 73.6 |
| Msa0727730 | MtrunA17_Chr4g0039891 | 33.094 | 139 | 48 | 2 | 3 | 96 | 21 | 159 | 8.09e-16 | 72.4 |
| Msa0727730 | MtrunA17_Chr8g0378061 | 62.745 | 51 | 19 | 0 | 3 | 53 | 31 | 81 | 1.91e-15 | 71.2 |
| Msa0727730 | MtrunA17_Chr5g0410881 | 56.863 | 51 | 22 | 0 | 3 | 53 | 41 | 91 | 2.90e-15 | 70.9 |
| Msa0727730 | MtrunA17_Chr7g0260331 | 57.692 | 52 | 22 | 0 | 2 | 53 | 57 | 108 | 4.45e-15 | 70.1 |
| Msa0727730 | MtrunA17_Chr6g0467041 | 60.784 | 51 | 20 | 0 | 3 | 53 | 31 | 81 | 4.81e-15 | 69.7 |
| Msa0727730 | MtrunA17_Chr5g0397881 | 56.863 | 51 | 22 | 0 | 3 | 53 | 33 | 83 | 5.33e-15 | 69.7 |
| Msa0727730 | MtrunA17_Chr4g0071051 | 42.353 | 85 | 45 | 1 | 3 | 83 | 110 | 194 | 8.76e-15 | 69.3 |
| Msa0727730 | MtrunA17_Chr8g0375041 | 50.980 | 51 | 25 | 0 | 3 | 53 | 18 | 68 | 1.20e-14 | 68.2 |
| Msa0727730 | MtrunA17_Chr8g0392001 | 47.619 | 84 | 36 | 2 | 3 | 85 | 31 | 107 | 1.94e-14 | 68.2 |
| Msa0727730 | MtrunA17_Chr5g0441531 | 56.863 | 51 | 22 | 0 | 3 | 53 | 34 | 84 | 2.15e-14 | 67.4 |
| Msa0727730 | MtrunA17_Chr1g0185131 | 33.036 | 112 | 68 | 1 | 2 | 113 | 40 | 144 | 2.65e-14 | 67.8 |
| Msa0727730 | MtrunA17_Chr8g0379701 | 58.824 | 51 | 21 | 0 | 3 | 53 | 21 | 71 | 2.74e-14 | 67.8 |
| Msa0727730 | MtrunA17_Chr1g0203601 | 58.824 | 51 | 21 | 0 | 3 | 53 | 27 | 77 | 2.85e-14 | 67.4 |
| Msa0727730 | MtrunA17_Chr1g0179321 | 54.902 | 51 | 23 | 0 | 3 | 53 | 58 | 108 | 3.55e-14 | 63.9 |
| Msa0727730 | MtrunA17_Chr7g0257331 | 50.943 | 53 | 26 | 0 | 1 | 53 | 29 | 81 | 5.48e-14 | 65.9 |
| Msa0727730 | MtrunA17_Chr3g0134031 | 35.789 | 95 | 54 | 1 | 3 | 97 | 33 | 120 | 7.71e-14 | 66.6 |
| Msa0727730 | MtrunA17_Chr3g0135831 | 55.769 | 52 | 23 | 0 | 2 | 53 | 54 | 105 | 1.86e-13 | 65.5 |
| Msa0727730 | MtrunA17_Chr4g0023771 | 55.102 | 49 | 22 | 0 | 3 | 51 | 24 | 72 | 4.65e-13 | 60.8 |
| Msa0727730 | MtrunA17_Chr6g0472421 | 54.902 | 51 | 23 | 0 | 3 | 53 | 42 | 92 | 5.86e-13 | 63.9 |
| Msa0727730 | MtrunA17_Chr2g0330821 | 56.863 | 51 | 22 | 0 | 3 | 53 | 88 | 138 | 7.09e-13 | 63.9 |
| Msa0727730 | MtrunA17_Chr1g0204741 | 38.095 | 84 | 48 | 1 | 3 | 82 | 49 | 132 | 3.72e-12 | 61.6 |
| Msa0727730 | MtrunA17_Chr2g0301521 | 68.889 | 45 | 12 | 1 | 54 | 96 | 17 | 61 | 2.16e-11 | 58.2 |
| Msa0727730 | MtrunA17_Chr6g0485571 | 49.020 | 51 | 26 | 0 | 3 | 53 | 20 | 70 | 4.79e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727730 | AT5G62020.1 | 64.706 | 51 | 18 | 0 | 3 | 53 | 32 | 82 | 2.12e-16 | 73.6 |
| Msa0727730 | AT5G54070.1 | 56.863 | 51 | 22 | 0 | 3 | 53 | 80 | 130 | 8.27e-16 | 72.4 |
| Msa0727730 | AT4G17750.1 | 60.784 | 51 | 20 | 0 | 3 | 53 | 61 | 111 | 8.68e-16 | 72.8 |
| Msa0727730 | AT4G13980.1 | 43.373 | 83 | 40 | 1 | 3 | 85 | 32 | 107 | 2.27e-15 | 71.6 |
| Msa0727730 | AT1G32330.2 | 33.099 | 142 | 47 | 2 | 3 | 96 | 46 | 187 | 2.90e-15 | 71.2 |
| Msa0727730 | AT1G32330.1 | 33.099 | 142 | 47 | 2 | 3 | 96 | 46 | 187 | 3.08e-15 | 71.2 |
| Msa0727730 | AT4G11660.1 | 56.863 | 51 | 22 | 0 | 3 | 53 | 68 | 118 | 4.40e-15 | 70.5 |
| Msa0727730 | AT3G02990.1 | 58.824 | 51 | 21 | 0 | 3 | 53 | 32 | 82 | 1.49e-14 | 69.3 |
| Msa0727730 | AT2G26150.1 | 31.061 | 132 | 52 | 1 | 3 | 95 | 53 | 184 | 1.84e-14 | 68.6 |
| Msa0727730 | AT2G26150.4 | 31.061 | 132 | 52 | 1 | 3 | 95 | 53 | 184 | 1.84e-14 | 68.6 |
| Msa0727730 | AT4G36990.1 | 54.902 | 51 | 23 | 0 | 3 | 53 | 23 | 73 | 2.27e-14 | 67.8 |
| Msa0727730 | AT5G45710.3 | 30.921 | 152 | 63 | 3 | 13 | 125 | 32 | 180 | 7.90e-14 | 67.0 |
| Msa0727730 | AT5G45710.1 | 30.921 | 152 | 63 | 3 | 13 | 125 | 32 | 180 | 7.90e-14 | 67.0 |
| Msa0727730 | AT1G46264.1 | 37.778 | 90 | 49 | 1 | 3 | 92 | 43 | 125 | 8.14e-14 | 66.6 |
| Msa0727730 | AT5G16820.1 | 54.902 | 51 | 23 | 0 | 3 | 53 | 36 | 86 | 8.74e-14 | 67.0 |
| Msa0727730 | AT5G16820.2 | 54.902 | 51 | 23 | 0 | 3 | 53 | 36 | 86 | 8.74e-14 | 67.0 |
| Msa0727730 | AT5G03720.2 | 35.294 | 119 | 59 | 4 | 3 | 121 | 64 | 164 | 3.03e-13 | 65.5 |
| Msa0727730 | AT5G03720.1 | 35.294 | 119 | 59 | 4 | 3 | 121 | 64 | 164 | 3.03e-13 | 65.5 |
| Msa0727730 | AT3G24520.1 | 52.941 | 51 | 24 | 0 | 3 | 53 | 26 | 76 | 1.01e-12 | 63.5 |
| Msa0727730 | AT3G22830.1 | 56.863 | 51 | 22 | 0 | 3 | 53 | 70 | 120 | 3.24e-12 | 62.4 |
| Msa0727730 | AT1G67970.1 | 57.692 | 52 | 21 | 1 | 3 | 53 | 28 | 79 | 4.93e-12 | 62.0 |
| Msa0727730 | AT2G41690.1 | 52.941 | 51 | 24 | 0 | 3 | 53 | 49 | 99 | 6.92e-12 | 60.8 |
| Msa0727730 | AT5G43840.1 | 58.824 | 51 | 21 | 0 | 3 | 53 | 28 | 78 | 3.82e-11 | 58.9 |
| Msa0727730 | AT3G51910.1 | 50.980 | 51 | 25 | 0 | 3 | 53 | 38 | 88 | 4.15e-11 | 58.9 |
Find 17 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTATAGCGTTCAAATTC+TGG | 0.178752 | 5_1:-31050049 | None:intergenic |
| ACAAGCATGAGCCTTGAATT+TGG | 0.269766 | 5_1:-31050196 | None:intergenic |
| TAACTGATTCCATTATTTCC+TGG | 0.361860 | 5_1:+31048710 | Msa0727730:CDS |
| GTTGACACTCCAGGAAATAA+TGG | 0.390115 | 5_1:-31048719 | None:intergenic |
| AAATTCACTAACCAAATTCA+AGG | 0.438354 | 5_1:+31050185 | Msa0727730:CDS |
| AAGGAACAAGAGAAGAAAAG+AGG | 0.491030 | 5_1:+31050119 | Msa0727730:CDS |
| AGGAACAAGAGAAGAAAAGA+GGG | 0.500190 | 5_1:+31050120 | Msa0727730:CDS |
| TTCACAAGCTATACCTTCAC+AGG | 0.540300 | 5_1:-31050150 | None:intergenic |
| TCTTCTTGAACTTCAAACAA+AGG | 0.549966 | 5_1:+31050100 | Msa0727730:CDS |
| GAATTCATTCGATCTTGCAA+AGG | 0.564573 | 5_1:+31048762 | Msa0727730:CDS |
| AGAGGGAGTGTATCCTGTGA+AGG | 0.593921 | 5_1:+31050137 | Msa0727730:CDS |
| GAAAATCTTAAACGTGACAA+AGG | 0.609106 | 5_1:+31050071 | Msa0727730:CDS |
| CATTCTTTGTAGAATACACA+TGG | 0.619024 | 5_1:+31049996 | Msa0727730:intron |
| TTGTAGAATACACATGGACA+AGG | 0.629978 | 5_1:+31050002 | Msa0727730:intron |
| TGTAGAATACACATGGACAA+GGG | 0.635627 | 5_1:+31050003 | Msa0727730:intron |
| GTAGAATACACATGGACAAG+GGG | 0.639314 | 5_1:+31050004 | Msa0727730:intron |
| TTATTATGCTTAAAATATCG+AGG | 0.653247 | 5_1:-31048793 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTTTCTTCTATATAA+AGG | + | chr5_1:31048539-31048558 | Msa0727730:intron | 10.0% |
| !!! | TTTTTTTTCTTCTATATAAA+GGG | + | chr5_1:31048540-31048559 | Msa0727730:intron | 10.0% |
| !!! | TTTTTTTTTCTTCTATATAA+AGG | + | chr5_1:31048539-31048558 | Msa0727730:intron | 10.0% |
| !!! | TTTTTTTTCTTCTATATAAA+GGG | + | chr5_1:31048540-31048559 | Msa0727730:intron | 10.0% |
| !!! | ATTTACTATTGATTTGTAAT+TGG | + | chr5_1:31048504-31048523 | Msa0727730:intron | 15.0% |
| !!! | TGTATTGAAAATATTAGTTT+TGG | + | chr5_1:31048587-31048606 | Msa0727730:intron | 15.0% |
| !!! | TTTTTTTAATTACCACATTA+AGG | + | chr5_1:31048945-31048964 | Msa0727730:intron | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | + | chr5_1:31049035-31049054 | Msa0727730:intron | 15.0% |
| !! | TCAAATAAATCAATTAAAAC+AGG | - | chr5_1:31049107-31049126 | None:intergenic | 15.0% |
| !! | TTTGTTGATATTGTTAATAA+AGG | + | chr5_1:31049279-31049298 | Msa0727730:intron | 15.0% |
| !!! | TTTTTTTTTAGACTTGTTTA+TGG | + | chr5_1:31049539-31049558 | Msa0727730:intron | 15.0% |
| !!! | ATTTACTATTGATTTGTAAT+TGG | + | chr5_1:31048504-31048523 | Msa0727730:intron | 15.0% |
| !!! | TGTATTGAAAATATTAGTTT+TGG | + | chr5_1:31048587-31048606 | Msa0727730:intron | 15.0% |
| !!! | TTTTTTTAATTACCACATTA+AGG | + | chr5_1:31048945-31048964 | Msa0727730:intron | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | + | chr5_1:31049035-31049054 | Msa0727730:intron | 15.0% |
| !! | TCAAATAAATCAATTAAAAC+AGG | - | chr5_1:31049107-31049126 | None:intergenic | 15.0% |
| !! | TTTGTTGATATTGTTAATAA+AGG | + | chr5_1:31049279-31049298 | Msa0727730:intron | 15.0% |
| !!! | TTTTTTTTTAGACTTGTTTA+TGG | + | chr5_1:31049539-31049558 | Msa0727730:intron | 15.0% |
| !!! | AATCTTCAACCTTTTTATAA+GGG | - | chr5_1:31048687-31048706 | None:intergenic | 20.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_1:31048796-31048815 | None:intergenic | 20.0% |
| !! | ACATTAAAAAAACCTTAATG+TGG | - | chr5_1:31048960-31048979 | None:intergenic | 20.0% |
| !!! | ATTTTTTTATCACCCAATTA+AGG | + | chr5_1:31048989-31049008 | Msa0727730:intron | 20.0% |
| !! | GAAATCAAAAAACCTTAATT+GGG | - | chr5_1:31049004-31049023 | None:intergenic | 20.0% |
| !! | AGAAATCAAAAAACCTTAAT+TGG | - | chr5_1:31049005-31049024 | None:intergenic | 20.0% |
| !! | AATATAAAGTGAACAACTTA+TGG | - | chr5_1:31049194-31049213 | None:intergenic | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | + | chr5_1:31049441-31049460 | Msa0727730:intron | 20.0% |
| !!! | GGATTTTACAAAATATCATA+TGG | + | chr5_1:31049479-31049498 | Msa0727730:intron | 20.0% |
| !! | CTAAACAACAATTTATTGTT+CGG | - | chr5_1:31049786-31049805 | None:intergenic | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | - | chr5_1:31049837-31049856 | None:intergenic | 20.0% |
| !!! | AATCTTCAACCTTTTTATAA+GGG | - | chr5_1:31048687-31048706 | None:intergenic | 20.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_1:31048796-31048815 | None:intergenic | 20.0% |
| !! | ACATTAAAAAAACCTTAATG+TGG | - | chr5_1:31048960-31048979 | None:intergenic | 20.0% |
| !!! | ATTTTTTTATCACCCAATTA+AGG | + | chr5_1:31048989-31049008 | Msa0727730:intron | 20.0% |
| !! | GAAATCAAAAAACCTTAATT+GGG | - | chr5_1:31049004-31049023 | None:intergenic | 20.0% |
| !! | AGAAATCAAAAAACCTTAAT+TGG | - | chr5_1:31049005-31049024 | None:intergenic | 20.0% |
| !! | AATATAAAGTGAACAACTTA+TGG | - | chr5_1:31049194-31049213 | None:intergenic | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | + | chr5_1:31049441-31049460 | Msa0727730:intron | 20.0% |
| !!! | GGATTTTACAAAATATCATA+TGG | + | chr5_1:31049479-31049498 | Msa0727730:intron | 20.0% |
| !! | CTAAACAACAATTTATTGTT+CGG | - | chr5_1:31049786-31049805 | None:intergenic | 20.0% |
| !! | AGCAATCAATAAATCTTAAT+TGG | - | chr5_1:31049837-31049856 | None:intergenic | 20.0% |
| ! | ATTTGTAATTGGAAAACTAG+AGG | + | chr5_1:31048515-31048534 | Msa0727730:intron | 25.0% |
| ! | TTTGTAATTGGAAAACTAGA+GGG | + | chr5_1:31048516-31048535 | Msa0727730:intron | 25.0% |
| !!! | AATATTAGTTTTGGCTTTGA+CGG | + | chr5_1:31048596-31048615 | Msa0727730:intron | 25.0% |
| !! | GAATCTTCAACCTTTTTATA+AGG | - | chr5_1:31048688-31048707 | None:intergenic | 25.0% |
| !! | TTTAATGTACTTCGTTTTCT+TGG | + | chr5_1:31048859-31048878 | Msa0727730:intron | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | + | chr5_1:31049042-31049061 | Msa0727730:intron | 25.0% |
| ! | TTTAGGAATATTGATCGTTA+TGG | + | chr5_1:31049059-31049078 | Msa0727730:intron | 25.0% |
| !! | ATGAACTATGTTATGGTTTT+TGG | + | chr5_1:31049448-31049467 | Msa0727730:intron | 25.0% |
| ! | ACTCAAAAACAAGTAAACAA+CGG | - | chr5_1:31049515-31049534 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_1:31049623-31049642 | Msa0727730:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_1:31049633-31049652 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_1:31049844-31049863 | Msa0727730:intron | 25.0% |
| !! | TATGGTTTGCAATTTGAATA+GGG | + | chr5_1:31049867-31049886 | Msa0727730:intron | 25.0% |
| !! | GCAAACGATAATTTTGTAAA+AGG | + | chr5_1:31049924-31049943 | Msa0727730:intron | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | + | chr5_1:31050185-31050204 | Msa0727730:CDS | 25.0% |
| ! | ATTTGTAATTGGAAAACTAG+AGG | + | chr5_1:31048515-31048534 | Msa0727730:intron | 25.0% |
| ! | TTTGTAATTGGAAAACTAGA+GGG | + | chr5_1:31048516-31048535 | Msa0727730:intron | 25.0% |
| !!! | AATATTAGTTTTGGCTTTGA+CGG | + | chr5_1:31048596-31048615 | Msa0727730:intron | 25.0% |
| !! | GAATCTTCAACCTTTTTATA+AGG | - | chr5_1:31048688-31048707 | None:intergenic | 25.0% |
| !! | TTTAATGTACTTCGTTTTCT+TGG | + | chr5_1:31048859-31048878 | Msa0727730:intron | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | + | chr5_1:31049042-31049061 | Msa0727730:intron | 25.0% |
| ! | TTTAGGAATATTGATCGTTA+TGG | + | chr5_1:31049059-31049078 | Msa0727730:intron | 25.0% |
| !! | ATGAACTATGTTATGGTTTT+TGG | + | chr5_1:31049448-31049467 | Msa0727730:intron | 25.0% |
| ! | ACTCAAAAACAAGTAAACAA+CGG | - | chr5_1:31049515-31049534 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_1:31049623-31049642 | Msa0727730:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_1:31049633-31049652 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_1:31049844-31049863 | Msa0727730:intron | 25.0% |
| !! | TATGGTTTGCAATTTGAATA+GGG | + | chr5_1:31049867-31049886 | Msa0727730:intron | 25.0% |
| !! | GCAAACGATAATTTTGTAAA+AGG | + | chr5_1:31049924-31049943 | Msa0727730:intron | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | + | chr5_1:31050185-31050204 | Msa0727730:CDS | 25.0% |
| CTGAGTAAACCCTTATAAAA+AGG | + | chr5_1:31048675-31048694 | Msa0727730:intron | 30.0% | |
| ! | TAACTGATTCCATTATTTCC+TGG | + | chr5_1:31048710-31048729 | Msa0727730:CDS | 30.0% |
| ACAATATCAACAAAAGAGCA+AGG | - | chr5_1:31049273-31049292 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | - | chr5_1:31049412-31049431 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | + | chr5_1:31049409-31049428 | Msa0727730:intron | 30.0% |
| !!! | TTATGGTTTTTGGTTCGATT+AGG | + | chr5_1:31049458-31049477 | Msa0727730:intron | 30.0% |
| ! | GTATGGTTTGCAATTTGAAT+AGG | + | chr5_1:31049866-31049885 | Msa0727730:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | - | chr5_1:31049954-31049973 | None:intergenic | 30.0% | |
| CATGTGTATTCTACAAAGAA+TGG | - | chr5_1:31049998-31050017 | None:intergenic | 30.0% | |
| CATTCTTTGTAGAATACACA+TGG | + | chr5_1:31049996-31050015 | Msa0727730:intron | 30.0% | |
| CAATTATAGCGTTCAAATTC+TGG | - | chr5_1:31050052-31050071 | None:intergenic | 30.0% | |
| GAAAATCTTAAACGTGACAA+AGG | + | chr5_1:31050071-31050090 | Msa0727730:CDS | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | + | chr5_1:31050100-31050119 | Msa0727730:CDS | 30.0% | |
| CTGAGTAAACCCTTATAAAA+AGG | + | chr5_1:31048675-31048694 | Msa0727730:intron | 30.0% | |
| ! | TAACTGATTCCATTATTTCC+TGG | + | chr5_1:31048710-31048729 | Msa0727730:CDS | 30.0% |
| ACAATATCAACAAAAGAGCA+AGG | - | chr5_1:31049273-31049292 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | - | chr5_1:31049412-31049431 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | + | chr5_1:31049409-31049428 | Msa0727730:intron | 30.0% |
| !!! | TTATGGTTTTTGGTTCGATT+AGG | + | chr5_1:31049458-31049477 | Msa0727730:intron | 30.0% |
| ! | GTATGGTTTGCAATTTGAAT+AGG | + | chr5_1:31049866-31049885 | Msa0727730:intron | 30.0% |
| TGGATATTCTTCATCAGATA+TGG | - | chr5_1:31049954-31049973 | None:intergenic | 30.0% | |
| CATGTGTATTCTACAAAGAA+TGG | - | chr5_1:31049998-31050017 | None:intergenic | 30.0% | |
| CATTCTTTGTAGAATACACA+TGG | + | chr5_1:31049996-31050015 | Msa0727730:intron | 30.0% | |
| CAATTATAGCGTTCAAATTC+TGG | - | chr5_1:31050052-31050071 | None:intergenic | 30.0% | |
| GAAAATCTTAAACGTGACAA+AGG | + | chr5_1:31050071-31050090 | Msa0727730:CDS | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | + | chr5_1:31050100-31050119 | Msa0727730:CDS | 30.0% | |
| CAAAAAGGTGAGAAAAAGGA+AGG | + | chr5_1:31048481-31048500 | Msa0727730:intron | 35.0% | |
| CAATACACAATGATTCCTCA+AGG | - | chr5_1:31048574-31048593 | None:intergenic | 35.0% | |
| !!! | TTTGGCTTTGACGGTTATTT+TGG | + | chr5_1:31048605-31048624 | Msa0727730:intron | 35.0% |
| !!! | TTGGCTTTGACGGTTATTTT+GGG | + | chr5_1:31048606-31048625 | Msa0727730:intron | 35.0% |
| !! | ATTTTGGGAATGATGGAAGA+TGG | + | chr5_1:31048621-31048640 | Msa0727730:intron | 35.0% |
| AAGGGTTTACTCAGAAAAAG+AGG | - | chr5_1:31048669-31048688 | None:intergenic | 35.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_1:31048762-31048781 | Msa0727730:CDS | 35.0% | |
| TTGAAATGTGTTACCCACAT+GGG | + | chr5_1:31049314-31049333 | Msa0727730:intron | 35.0% | |
| TTGGGCTAATTGTGTTAGTT+TGG | + | chr5_1:31049337-31049356 | Msa0727730:intron | 35.0% | |
| ! | TGGGCTAATTGTGTTAGTTT+GGG | + | chr5_1:31049338-31049357 | Msa0727730:intron | 35.0% |
| TCAAACCTGAAACATTGAGA+GGG | - | chr5_1:31049377-31049396 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_1:31049849-31049868 | Msa0727730:intron | 35.0% | |
| TACGAAAAGATTGTTGCGTA+TGG | - | chr5_1:31049974-31049993 | None:intergenic | 35.0% | |
| TTGTAGAATACACATGGACA+AGG | + | chr5_1:31050002-31050021 | Msa0727730:intron | 35.0% | |
| TGTAGAATACACATGGACAA+GGG | + | chr5_1:31050003-31050022 | Msa0727730:intron | 35.0% | |
| AAGGAACAAGAGAAGAAAAG+AGG | + | chr5_1:31050119-31050138 | Msa0727730:CDS | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+GGG | + | chr5_1:31050120-31050139 | Msa0727730:CDS | 35.0% | |
| CAAAAAGGTGAGAAAAAGGA+AGG | + | chr5_1:31048481-31048500 | Msa0727730:intron | 35.0% | |
| CAATACACAATGATTCCTCA+AGG | - | chr5_1:31048574-31048593 | None:intergenic | 35.0% | |
| !!! | TTTGGCTTTGACGGTTATTT+TGG | + | chr5_1:31048605-31048624 | Msa0727730:intron | 35.0% |
| !!! | TTGGCTTTGACGGTTATTTT+GGG | + | chr5_1:31048606-31048625 | Msa0727730:intron | 35.0% |
| !! | ATTTTGGGAATGATGGAAGA+TGG | + | chr5_1:31048621-31048640 | Msa0727730:intron | 35.0% |
| AAGGGTTTACTCAGAAAAAG+AGG | - | chr5_1:31048669-31048688 | None:intergenic | 35.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_1:31048762-31048781 | Msa0727730:CDS | 35.0% | |
| TTGAAATGTGTTACCCACAT+GGG | + | chr5_1:31049314-31049333 | Msa0727730:intron | 35.0% | |
| TTGGGCTAATTGTGTTAGTT+TGG | + | chr5_1:31049337-31049356 | Msa0727730:intron | 35.0% | |
| ! | TGGGCTAATTGTGTTAGTTT+GGG | + | chr5_1:31049338-31049357 | Msa0727730:intron | 35.0% |
| TCAAACCTGAAACATTGAGA+GGG | - | chr5_1:31049377-31049396 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_1:31049849-31049868 | Msa0727730:intron | 35.0% | |
| TACGAAAAGATTGTTGCGTA+TGG | - | chr5_1:31049974-31049993 | None:intergenic | 35.0% | |
| TTGTAGAATACACATGGACA+AGG | + | chr5_1:31050002-31050021 | Msa0727730:intron | 35.0% | |
| TGTAGAATACACATGGACAA+GGG | + | chr5_1:31050003-31050022 | Msa0727730:intron | 35.0% | |
| AAGGAACAAGAGAAGAAAAG+AGG | + | chr5_1:31050119-31050138 | Msa0727730:CDS | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+GGG | + | chr5_1:31050120-31050139 | Msa0727730:CDS | 35.0% | |
| CGGTCAAAAAGGTGAGAAAA+AGG | + | chr5_1:31048477-31048496 | Msa0727730:intron | 40.0% | |
| !! | TAAAGGGTGTTATAGCCTTG+AGG | + | chr5_1:31048556-31048575 | Msa0727730:intron | 40.0% |
| !!! | GACGGTTATTTTGGGAATGA+TGG | + | chr5_1:31048614-31048633 | Msa0727730:intron | 40.0% |
| GTTGACACTCCAGGAAATAA+TGG | - | chr5_1:31048722-31048741 | None:intergenic | 40.0% | |
| ! | ACTTTTACAGTTGACACTCC+AGG | - | chr5_1:31048731-31048750 | None:intergenic | 40.0% |
| ACAAAAGAGCAAGGCTTGAT+TGG | - | chr5_1:31049264-31049283 | None:intergenic | 40.0% | |
| CTTGAAATGTGTTACCCACA+TGG | + | chr5_1:31049313-31049332 | Msa0727730:intron | 40.0% | |
| GTCAAACCTGAAACATTGAG+AGG | - | chr5_1:31049378-31049397 | None:intergenic | 40.0% | |
| GTAGAATACACATGGACAAG+GGG | + | chr5_1:31050004-31050023 | Msa0727730:intron | 40.0% | |
| TTCACAAGCTATACCTTCAC+AGG | - | chr5_1:31050153-31050172 | None:intergenic | 40.0% | |
| ACAAGCATGAGCCTTGAATT+TGG | - | chr5_1:31050199-31050218 | None:intergenic | 40.0% | |
| CGGTCAAAAAGGTGAGAAAA+AGG | + | chr5_1:31048477-31048496 | Msa0727730:intron | 40.0% | |
| !! | TAAAGGGTGTTATAGCCTTG+AGG | + | chr5_1:31048556-31048575 | Msa0727730:intron | 40.0% |
| !!! | GACGGTTATTTTGGGAATGA+TGG | + | chr5_1:31048614-31048633 | Msa0727730:intron | 40.0% |
| GTTGACACTCCAGGAAATAA+TGG | - | chr5_1:31048722-31048741 | None:intergenic | 40.0% | |
| ! | ACTTTTACAGTTGACACTCC+AGG | - | chr5_1:31048731-31048750 | None:intergenic | 40.0% |
| ACAAAAGAGCAAGGCTTGAT+TGG | - | chr5_1:31049264-31049283 | None:intergenic | 40.0% | |
| CTTGAAATGTGTTACCCACA+TGG | + | chr5_1:31049313-31049332 | Msa0727730:intron | 40.0% | |
| GTCAAACCTGAAACATTGAG+AGG | - | chr5_1:31049378-31049397 | None:intergenic | 40.0% | |
| GTAGAATACACATGGACAAG+GGG | + | chr5_1:31050004-31050023 | Msa0727730:intron | 40.0% | |
| TTCACAAGCTATACCTTCAC+AGG | - | chr5_1:31050153-31050172 | None:intergenic | 40.0% | |
| ACAAGCATGAGCCTTGAATT+TGG | - | chr5_1:31050199-31050218 | None:intergenic | 40.0% | |
| ! | GGAATGATGGAAGATGGTCA+TGG | + | chr5_1:31048627-31048646 | Msa0727730:intron | 45.0% |
| AATGTGTTACCCACATGGGT+TGG | + | chr5_1:31049318-31049337 | Msa0727730:intron | 45.0% | |
| ATGTGTTACCCACATGGGTT+GGG | + | chr5_1:31049319-31049338 | Msa0727730:intron | 45.0% | |
| ACAATTAGCCCAACCCATGT+GGG | - | chr5_1:31049330-31049349 | None:intergenic | 45.0% | |
| CATTGAGAGGGATCACTACA+AGG | - | chr5_1:31049365-31049384 | None:intergenic | 45.0% | |
| GTGATCCCTCTCAATGTTTC+AGG | + | chr5_1:31049369-31049388 | Msa0727730:intron | 45.0% | |
| ! | GGAATGATGGAAGATGGTCA+TGG | + | chr5_1:31048627-31048646 | Msa0727730:intron | 45.0% |
| AATGTGTTACCCACATGGGT+TGG | + | chr5_1:31049318-31049337 | Msa0727730:intron | 45.0% | |
| ATGTGTTACCCACATGGGTT+GGG | + | chr5_1:31049319-31049338 | Msa0727730:intron | 45.0% | |
| ACAATTAGCCCAACCCATGT+GGG | - | chr5_1:31049330-31049349 | None:intergenic | 45.0% | |
| CATTGAGAGGGATCACTACA+AGG | - | chr5_1:31049365-31049384 | None:intergenic | 45.0% | |
| GTGATCCCTCTCAATGTTTC+AGG | + | chr5_1:31049369-31049388 | Msa0727730:intron | 45.0% | |
| CACAATTAGCCCAACCCATG+TGG | - | chr5_1:31049331-31049350 | None:intergenic | 50.0% | |
| ! | AGAGGGAGTGTATCCTGTGA+AGG | + | chr5_1:31050137-31050156 | Msa0727730:CDS | 50.0% |
| CACAATTAGCCCAACCCATG+TGG | - | chr5_1:31049331-31049350 | None:intergenic | 50.0% | |
| ! | AGAGGGAGTGTATCCTGTGA+AGG | + | chr5_1:31050137-31050156 | Msa0727730:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 31048473 | 31050232 | 31048473 | ID=Msa0727730;Name=Msa0727730 |
| chr5_1 | mRNA | 31048473 | 31050232 | 31048473 | ID=Msa0727730-mRNA-1;Parent=Msa0727730;Name=Msa0727730-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0|0|0.66|0|0.66|3|0|127 |
| chr5_1 | exon | 31048473 | 31048478 | 31048473 | ID=Msa0727730-mRNA-1:exon:10270;Parent=Msa0727730-mRNA-1 |
| chr5_1 | exon | 31048697 | 31048849 | 31048697 | ID=Msa0727730-mRNA-1:exon:10271;Parent=Msa0727730-mRNA-1 |
| chr5_1 | exon | 31050008 | 31050232 | 31050008 | ID=Msa0727730-mRNA-1:exon:10272;Parent=Msa0727730-mRNA-1 |
| chr5_1 | CDS | 31048473 | 31048478 | 31048473 | ID=Msa0727730-mRNA-1:cds;Parent=Msa0727730-mRNA-1 |
| chr5_1 | CDS | 31048697 | 31048849 | 31048697 | ID=Msa0727730-mRNA-1:cds;Parent=Msa0727730-mRNA-1 |
| chr5_1 | CDS | 31050008 | 31050232 | 31050008 | ID=Msa0727730-mRNA-1:cds;Parent=Msa0727730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
