Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727780 | GAY34816.1 | 57.895 | 95 | 40 | 0 | 1 | 95 | 21 | 115 | 1.48e-27 | 114 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727780 | sp|Q94BZ5|HSFA5_ARATH | 35.556 | 135 | 61 | 3 | 1 | 116 | 31 | 158 | 2.45e-16 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727780 | A0A2H5N3L5 | 57.895 | 95 | 40 | 0 | 1 | 95 | 21 | 115 | 7.09e-28 | 114 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0727780 | TF | HSF |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727780 | MtrunA17_Chr2g0284481 | 38.194 | 144 | 47 | 2 | 1 | 102 | 23 | 166 | 2.44e-22 | 90.1 |
| Msa0727780 | MtrunA17_Chr5g0402291 | 41.758 | 91 | 46 | 1 | 1 | 91 | 17 | 100 | 6.92e-18 | 77.0 |
| Msa0727780 | MtrunA17_Chr4g0071051 | 44.048 | 84 | 40 | 1 | 1 | 84 | 109 | 185 | 2.77e-16 | 73.6 |
| Msa0727780 | MtrunA17_Chr8g0392001 | 49.412 | 85 | 35 | 2 | 1 | 84 | 30 | 107 | 4.15e-16 | 72.8 |
| Msa0727780 | MtrunA17_Chr4g0039891 | 37.755 | 98 | 54 | 1 | 1 | 98 | 20 | 110 | 4.45e-16 | 73.2 |
| Msa0727780 | MtrunA17_Chr8g0378061 | 42.857 | 84 | 41 | 1 | 1 | 84 | 30 | 106 | 6.55e-16 | 72.4 |
| Msa0727780 | MtrunA17_Chr5g0410881 | 57.692 | 52 | 22 | 0 | 1 | 52 | 40 | 91 | 7.06e-16 | 72.4 |
| Msa0727780 | MtrunA17_Chr6g0467041 | 41.758 | 91 | 46 | 3 | 1 | 91 | 30 | 113 | 7.90e-16 | 72.0 |
| Msa0727780 | MtrunA17_Chr2g0330821 | 44.048 | 84 | 40 | 1 | 1 | 84 | 87 | 163 | 1.22e-15 | 71.6 |
| Msa0727780 | MtrunA17_Chr8g0375041 | 50.000 | 52 | 26 | 0 | 1 | 52 | 17 | 68 | 3.38e-15 | 69.3 |
| Msa0727780 | MtrunA17_Chr7g0260331 | 38.889 | 90 | 48 | 1 | 1 | 90 | 57 | 139 | 8.11e-15 | 69.3 |
| Msa0727780 | MtrunA17_Chr5g0397881 | 53.846 | 52 | 24 | 0 | 1 | 52 | 32 | 83 | 9.72e-15 | 68.9 |
| Msa0727780 | MtrunA17_Chr3g0134031 | 35.417 | 96 | 55 | 1 | 1 | 96 | 32 | 120 | 1.31e-14 | 68.6 |
| Msa0727780 | MtrunA17_Chr1g0203601 | 55.769 | 52 | 23 | 0 | 1 | 52 | 26 | 77 | 3.35e-14 | 67.0 |
| Msa0727780 | MtrunA17_Chr1g0179321 | 51.923 | 52 | 25 | 0 | 1 | 52 | 57 | 108 | 3.60e-14 | 63.9 |
| Msa0727780 | MtrunA17_Chr5g0441531 | 53.846 | 52 | 24 | 0 | 1 | 52 | 33 | 84 | 3.82e-14 | 66.6 |
| Msa0727780 | MtrunA17_Chr8g0379701 | 57.692 | 52 | 22 | 0 | 1 | 52 | 20 | 71 | 5.11e-14 | 67.0 |
| Msa0727780 | MtrunA17_Chr4g0023771 | 55.556 | 54 | 22 | 1 | 2 | 55 | 24 | 75 | 5.56e-14 | 63.2 |
| Msa0727780 | MtrunA17_Chr3g0135831 | 53.846 | 52 | 24 | 0 | 1 | 52 | 54 | 105 | 2.19e-13 | 65.1 |
| Msa0727780 | MtrunA17_Chr7g0257331 | 48.077 | 52 | 27 | 0 | 1 | 52 | 30 | 81 | 3.47e-13 | 63.5 |
| Msa0727780 | MtrunA17_Chr2g0301521 | 64.815 | 54 | 14 | 2 | 47 | 95 | 8 | 61 | 4.89e-13 | 62.4 |
| Msa0727780 | MtrunA17_Chr6g0472421 | 51.923 | 52 | 25 | 0 | 1 | 52 | 41 | 92 | 6.52e-13 | 63.9 |
| Msa0727780 | MtrunA17_Chr1g0185131 | 32.143 | 112 | 69 | 1 | 1 | 112 | 40 | 144 | 1.11e-12 | 63.2 |
| Msa0727780 | MtrunA17_Chr1g0204741 | 38.824 | 85 | 46 | 2 | 1 | 80 | 48 | 131 | 7.55e-12 | 60.8 |
| Msa0727780 | MtrunA17_Chr6g0485571 | 48.077 | 52 | 27 | 0 | 1 | 52 | 19 | 70 | 1.45e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0727780 | AT4G13980.1 | 35.556 | 135 | 61 | 3 | 1 | 116 | 31 | 158 | 2.49e-17 | 77.0 |
| Msa0727780 | AT4G17750.1 | 38.144 | 97 | 53 | 1 | 1 | 97 | 60 | 149 | 1.56e-16 | 74.7 |
| Msa0727780 | AT5G62020.1 | 61.538 | 52 | 20 | 0 | 1 | 52 | 31 | 82 | 3.12e-16 | 73.2 |
| Msa0727780 | AT1G32330.2 | 40.206 | 97 | 51 | 1 | 1 | 97 | 45 | 134 | 1.49e-15 | 72.0 |
| Msa0727780 | AT1G32330.1 | 40.206 | 97 | 51 | 1 | 1 | 97 | 45 | 134 | 1.50e-15 | 72.0 |
| Msa0727780 | AT5G54070.1 | 51.923 | 52 | 25 | 0 | 1 | 52 | 79 | 130 | 3.22e-15 | 70.5 |
| Msa0727780 | AT4G11660.1 | 52.830 | 53 | 25 | 0 | 1 | 53 | 67 | 119 | 7.54e-15 | 69.7 |
| Msa0727780 | AT2G26150.1 | 34.234 | 111 | 65 | 2 | 1 | 111 | 52 | 154 | 8.73e-15 | 69.3 |
| Msa0727780 | AT2G26150.4 | 34.234 | 111 | 65 | 2 | 1 | 111 | 52 | 154 | 8.73e-15 | 69.3 |
| Msa0727780 | AT3G02990.1 | 57.692 | 52 | 22 | 0 | 1 | 52 | 31 | 82 | 9.29e-15 | 69.7 |
| Msa0727780 | AT1G46264.1 | 37.363 | 91 | 50 | 1 | 1 | 91 | 42 | 125 | 2.01e-14 | 68.6 |
| Msa0727780 | AT4G36990.1 | 51.923 | 52 | 25 | 0 | 1 | 52 | 22 | 73 | 3.23e-14 | 67.4 |
| Msa0727780 | AT5G16820.1 | 53.846 | 52 | 24 | 0 | 1 | 52 | 35 | 86 | 5.58e-14 | 67.4 |
| Msa0727780 | AT5G16820.2 | 53.846 | 52 | 24 | 0 | 1 | 52 | 35 | 86 | 5.58e-14 | 67.4 |
| Msa0727780 | AT5G03720.2 | 35.000 | 120 | 60 | 4 | 1 | 120 | 63 | 164 | 1.05e-13 | 66.6 |
| Msa0727780 | AT5G03720.1 | 35.000 | 120 | 60 | 4 | 1 | 120 | 63 | 164 | 1.05e-13 | 66.6 |
| Msa0727780 | AT3G24520.1 | 38.095 | 84 | 45 | 1 | 1 | 84 | 25 | 101 | 1.14e-13 | 66.2 |
| Msa0727780 | AT5G45710.3 | 30.719 | 153 | 62 | 3 | 12 | 124 | 32 | 180 | 1.67e-13 | 65.9 |
| Msa0727780 | AT5G45710.1 | 30.719 | 153 | 62 | 3 | 12 | 124 | 32 | 180 | 1.67e-13 | 65.9 |
| Msa0727780 | AT3G22830.1 | 39.286 | 84 | 44 | 1 | 1 | 84 | 69 | 145 | 9.03e-13 | 63.9 |
| Msa0727780 | AT1G67970.1 | 56.604 | 53 | 22 | 1 | 1 | 52 | 27 | 79 | 1.68e-12 | 63.2 |
| Msa0727780 | AT2G41690.1 | 38.095 | 84 | 48 | 1 | 1 | 80 | 48 | 131 | 5.31e-12 | 60.8 |
| Msa0727780 | AT3G51910.1 | 50.000 | 52 | 26 | 0 | 1 | 52 | 37 | 88 | 2.44e-11 | 59.3 |
| Msa0727780 | AT5G43840.1 | 34.951 | 103 | 60 | 1 | 1 | 103 | 27 | 122 | 3.74e-11 | 58.9 |
Find 21 sgRNAs with CRISPR-Local
Find 140 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTATAGCATTCAAATTC+TGG | 0.188343 | 5_1:-31082823 | None:intergenic |
| ACAAGCATGAGCCTTGAATT+TGG | 0.278825 | 5_1:-31082970 | None:intergenic |
| TAACTGATTCCATTATTTCC+TGG | 0.361860 | 5_1:+31081582 | Msa0727780:CDS |
| GTTGGCACTCCAGGAAATAA+TGG | 0.377697 | 5_1:-31081591 | None:intergenic |
| AAATTCACTAACCAAATTCA+AGG | 0.438354 | 5_1:+31082959 | Msa0727780:CDS |
| ACTTCTACAGTTGGCACTCC+AGG | 0.475767 | 5_1:-31081600 | None:intergenic |
| CTCAAGTTTCAACAGACGAT+TGG | 0.484466 | 5_1:+31081691 | Msa0727780:CDS |
| AAGGAACAAGAGAAGAAAAG+AGG | 0.491030 | 5_1:+31082893 | Msa0727780:CDS |
| AGGAACAAGAGAAGAAAAGA+GGG | 0.500190 | 5_1:+31082894 | Msa0727780:CDS |
| ATTCACAAGCTATACCTTCA+CGG | 0.545783 | 5_1:-31082925 | None:intergenic |
| AATGATGAAACTTCTACAGT+TGG | 0.549787 | 5_1:-31081609 | None:intergenic |
| TTCACAAGCTATACCTTCAC+GGG | 0.549937 | 5_1:-31082924 | None:intergenic |
| TCTTCTTGAACTTCAAACAA+AGG | 0.549966 | 5_1:+31082874 | Msa0727780:CDS |
| GAATTCATTCGATCTTGCAA+AGG | 0.564573 | 5_1:+31081634 | Msa0727780:CDS |
| CATTCTTTGTAGAATACACA+TGG | 0.619024 | 5_1:+31082770 | Msa0727780:intron |
| TTGTAGAATACACATGGACA+AGG | 0.629978 | 5_1:+31082776 | Msa0727780:intron |
| TGTAGAATACACATGGACAA+GGG | 0.635627 | 5_1:+31082777 | Msa0727780:intron |
| AGAGGGAGTGTATCCCGTGA+AGG | 0.636144 | 5_1:+31082911 | Msa0727780:CDS |
| GTAGAATACACATGGACAAG+GGG | 0.639314 | 5_1:+31082778 | Msa0727780:intron |
| TTATTATGCTTAAAATATCG+AGG | 0.653247 | 5_1:-31081665 | None:intergenic |
| TGAAAATCTTAAACGTGACA+AGG | 0.667756 | 5_1:+31082844 | Msa0727780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATTTAATAAACAACATT+AGG | - | chr5_1:31081801-31081820 | None:intergenic | 10.0% |
| !! | AAAATTTAATAAACAACATT+AGG | - | chr5_1:31081801-31081820 | None:intergenic | 10.0% |
| !! | ACATTAAAAAAAACCTTAAT+GGG | - | chr5_1:31081833-31081852 | None:intergenic | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | + | chr5_1:31081908-31081927 | Msa0727780:intron | 15.0% |
| !! | TCAAATAAATCAATTAAAAC+AGG | - | chr5_1:31081980-31081999 | None:intergenic | 15.0% |
| !! | TTTGTTGATATTGTTAATAA+AGG | + | chr5_1:31082150-31082169 | Msa0727780:intron | 15.0% |
| !!! | AGATTTTACAAAATATCATA+TGG | + | chr5_1:31082351-31082370 | Msa0727780:intron | 15.0% |
| !! | ACATTAAAAAAAACCTTAAT+GGG | - | chr5_1:31081833-31081852 | None:intergenic | 15.0% |
| !!! | TATGATTTTTAGTTTGATTA+AGG | + | chr5_1:31081908-31081927 | Msa0727780:intron | 15.0% |
| !! | TCAAATAAATCAATTAAAAC+AGG | - | chr5_1:31081980-31081999 | None:intergenic | 15.0% |
| !! | TTTGTTGATATTGTTAATAA+AGG | + | chr5_1:31082150-31082169 | Msa0727780:intron | 15.0% |
| !!! | AGATTTTACAAAATATCATA+TGG | + | chr5_1:31082351-31082370 | Msa0727780:intron | 15.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_1:31081668-31081687 | None:intergenic | 20.0% |
| !!! | TTTAATGTACTTCATTTTCT+TGG | + | chr5_1:31081731-31081750 | Msa0727780:intron | 20.0% |
| !! | CATTAAAAAAAACCTTAATG+GGG | - | chr5_1:31081832-31081851 | None:intergenic | 20.0% |
| !! | CACATTAAAAAAAACCTTAA+TGG | - | chr5_1:31081834-31081853 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTTATCCAATC+AGG | + | chr5_1:31082118-31082137 | Msa0727780:intron | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | + | chr5_1:31082313-31082332 | Msa0727780:intron | 20.0% |
| !! | CTAAAGAACAATTTATTGTT+CGG | - | chr5_1:31082620-31082639 | None:intergenic | 20.0% |
| !!! | TATGGTTTGAAATTTGAATA+GGG | + | chr5_1:31082697-31082716 | Msa0727780:intron | 20.0% |
| !!! | AGTTTATTCAATCTTTTCAT+AGG | + | chr5_1:31082729-31082748 | Msa0727780:intron | 20.0% |
| !! | TTATTATGCTTAAAATATCG+AGG | - | chr5_1:31081668-31081687 | None:intergenic | 20.0% |
| !!! | TTTAATGTACTTCATTTTCT+TGG | + | chr5_1:31081731-31081750 | Msa0727780:intron | 20.0% |
| !! | CATTAAAAAAAACCTTAATG+GGG | - | chr5_1:31081832-31081851 | None:intergenic | 20.0% |
| !! | CACATTAAAAAAAACCTTAA+TGG | - | chr5_1:31081834-31081853 | None:intergenic | 20.0% |
| !! | ATTAAGTTATTTATCCAATC+AGG | + | chr5_1:31082118-31082137 | Msa0727780:intron | 20.0% |
| !! | AAAAAACATGAACTATGTTA+TGG | + | chr5_1:31082313-31082332 | Msa0727780:intron | 20.0% |
| !! | CTAAAGAACAATTTATTGTT+CGG | - | chr5_1:31082620-31082639 | None:intergenic | 20.0% |
| !!! | TATGGTTTGAAATTTGAATA+GGG | + | chr5_1:31082697-31082716 | Msa0727780:intron | 20.0% |
| !!! | AGTTTATTCAATCTTTTCAT+AGG | + | chr5_1:31082729-31082748 | Msa0727780:intron | 20.0% |
| !!! | TTTTTTTAATCACCCCATTA+AGG | + | chr5_1:31081817-31081836 | Msa0727780:intron | 25.0% |
| ! | AGAAATCAAAAAACCTTCAT+GGG | - | chr5_1:31081878-31081897 | None:intergenic | 25.0% |
| ! | AAGAAATCAAAAAACCTTCA+TGG | - | chr5_1:31081879-31081898 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | + | chr5_1:31081915-31081934 | Msa0727780:intron | 25.0% |
| !! | ATGAACTATGTTATGGTTTT+TGG | + | chr5_1:31082320-31082339 | Msa0727780:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+TGG | - | chr5_1:31082387-31082406 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_1:31082458-31082477 | Msa0727780:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_1:31082468-31082487 | None:intergenic | 25.0% |
| ! | AGCAATCAATAAATCTTAAC+TGG | - | chr5_1:31082667-31082686 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_1:31082674-31082693 | Msa0727780:intron | 25.0% |
| !! | GTATGGTTTGAAATTTGAAT+AGG | + | chr5_1:31082696-31082715 | Msa0727780:intron | 25.0% |
| ! | CAATTATAGCATTCAAATTC+TGG | - | chr5_1:31082826-31082845 | None:intergenic | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | + | chr5_1:31082959-31082978 | Msa0727780:CDS | 25.0% |
| !!! | TTTTTTTAATCACCCCATTA+AGG | + | chr5_1:31081817-31081836 | Msa0727780:intron | 25.0% |
| ! | AGAAATCAAAAAACCTTCAT+GGG | - | chr5_1:31081878-31081897 | None:intergenic | 25.0% |
| ! | AAGAAATCAAAAAACCTTCA+TGG | - | chr5_1:31081879-31081898 | None:intergenic | 25.0% |
| !!! | TTTAGTTTGATTAAGGCTTT+AGG | + | chr5_1:31081915-31081934 | Msa0727780:intron | 25.0% |
| !! | ATGAACTATGTTATGGTTTT+TGG | + | chr5_1:31082320-31082339 | Msa0727780:intron | 25.0% |
| ! | ACTCAAAAACAAGTTAACAA+TGG | - | chr5_1:31082387-31082406 | None:intergenic | 25.0% |
| ! | CTTATTTCCAATAAGTTGTT+TGG | + | chr5_1:31082458-31082477 | Msa0727780:intron | 25.0% |
| ! | AGTTATTCCAAACAACTTAT+TGG | - | chr5_1:31082468-31082487 | None:intergenic | 25.0% |
| ! | AGCAATCAATAAATCTTAAC+TGG | - | chr5_1:31082667-31082686 | None:intergenic | 25.0% |
| !! | TTTATTGATTGCTTGAATTG+TGG | + | chr5_1:31082674-31082693 | Msa0727780:intron | 25.0% |
| !! | GTATGGTTTGAAATTTGAAT+AGG | + | chr5_1:31082696-31082715 | Msa0727780:intron | 25.0% |
| ! | CAATTATAGCATTCAAATTC+TGG | - | chr5_1:31082826-31082845 | None:intergenic | 25.0% |
| ! | AAATTCACTAACCAAATTCA+AGG | + | chr5_1:31082959-31082978 | Msa0727780:CDS | 25.0% |
| ! | TAACTGATTCCATTATTTCC+TGG | + | chr5_1:31081582-31081601 | Msa0727780:CDS | 30.0% |
| AATGATGAAACTTCTACAGT+TGG | - | chr5_1:31081612-31081631 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTATCACCCCATGA+AGG | + | chr5_1:31081862-31081881 | Msa0727780:intron | 30.0% |
| GAAATCAAAAAACCTTCATG+GGG | - | chr5_1:31081877-31081896 | None:intergenic | 30.0% | |
| ACAATATCAACAAAAGAGCA+AGG | - | chr5_1:31082144-31082163 | None:intergenic | 30.0% | |
| TCAAACCTGAAACATTAACA+GGG | - | chr5_1:31082249-31082268 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | - | chr5_1:31082284-31082303 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | + | chr5_1:31082281-31082300 | Msa0727780:intron | 30.0% |
| CATGTGTATTCTACAAAGAA+TGG | - | chr5_1:31082772-31082791 | None:intergenic | 30.0% | |
| CATTCTTTGTAGAATACACA+TGG | + | chr5_1:31082770-31082789 | Msa0727780:intron | 30.0% | |
| TGAAAATCTTAAACGTGACA+AGG | + | chr5_1:31082844-31082863 | Msa0727780:CDS | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | + | chr5_1:31082874-31082893 | Msa0727780:CDS | 30.0% | |
| ! | TAACTGATTCCATTATTTCC+TGG | + | chr5_1:31081582-31081601 | Msa0727780:CDS | 30.0% |
| AATGATGAAACTTCTACAGT+TGG | - | chr5_1:31081612-31081631 | None:intergenic | 30.0% | |
| !!! | ATTTTTTTATCACCCCATGA+AGG | + | chr5_1:31081862-31081881 | Msa0727780:intron | 30.0% |
| GAAATCAAAAAACCTTCATG+GGG | - | chr5_1:31081877-31081896 | None:intergenic | 30.0% | |
| ACAATATCAACAAAAGAGCA+AGG | - | chr5_1:31082144-31082163 | None:intergenic | 30.0% | |
| TCAAACCTGAAACATTAACA+GGG | - | chr5_1:31082249-31082268 | None:intergenic | 30.0% | |
| CCAAACTAGCAAACAAAAAT+TGG | - | chr5_1:31082284-31082303 | None:intergenic | 30.0% | |
| !! | CCAATTTTTGTTTGCTAGTT+TGG | + | chr5_1:31082281-31082300 | Msa0727780:intron | 30.0% |
| CATGTGTATTCTACAAAGAA+TGG | - | chr5_1:31082772-31082791 | None:intergenic | 30.0% | |
| CATTCTTTGTAGAATACACA+TGG | + | chr5_1:31082770-31082789 | Msa0727780:intron | 30.0% | |
| TGAAAATCTTAAACGTGACA+AGG | + | chr5_1:31082844-31082863 | Msa0727780:CDS | 30.0% | |
| TCTTCTTGAACTTCAAACAA+AGG | + | chr5_1:31082874-31082893 | Msa0727780:CDS | 30.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_1:31081634-31081653 | Msa0727780:CDS | 35.0% | |
| TTGAAATGTGTTACCCACAT+GGG | + | chr5_1:31082185-31082204 | Msa0727780:intron | 35.0% | |
| CAAACCTGAAACATTAACAG+GGG | - | chr5_1:31082248-31082267 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAC+AGG | - | chr5_1:31082250-31082269 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_1:31082679-31082698 | Msa0727780:intron | 35.0% | |
| TTGTAGAATACACATGGACA+AGG | + | chr5_1:31082776-31082795 | Msa0727780:intron | 35.0% | |
| TGTAGAATACACATGGACAA+GGG | + | chr5_1:31082777-31082796 | Msa0727780:intron | 35.0% | |
| AAGGAACAAGAGAAGAAAAG+AGG | + | chr5_1:31082893-31082912 | Msa0727780:CDS | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+GGG | + | chr5_1:31082894-31082913 | Msa0727780:CDS | 35.0% | |
| ATTCACAAGCTATACCTTCA+CGG | - | chr5_1:31082928-31082947 | None:intergenic | 35.0% | |
| GAATTCATTCGATCTTGCAA+AGG | + | chr5_1:31081634-31081653 | Msa0727780:CDS | 35.0% | |
| TTGAAATGTGTTACCCACAT+GGG | + | chr5_1:31082185-31082204 | Msa0727780:intron | 35.0% | |
| CAAACCTGAAACATTAACAG+GGG | - | chr5_1:31082248-31082267 | None:intergenic | 35.0% | |
| GTCAAACCTGAAACATTAAC+AGG | - | chr5_1:31082250-31082269 | None:intergenic | 35.0% | |
| TGATTGCTTGAATTGTGGTA+TGG | + | chr5_1:31082679-31082698 | Msa0727780:intron | 35.0% | |
| TTGTAGAATACACATGGACA+AGG | + | chr5_1:31082776-31082795 | Msa0727780:intron | 35.0% | |
| TGTAGAATACACATGGACAA+GGG | + | chr5_1:31082777-31082796 | Msa0727780:intron | 35.0% | |
| AAGGAACAAGAGAAGAAAAG+AGG | + | chr5_1:31082893-31082912 | Msa0727780:CDS | 35.0% | |
| AGGAACAAGAGAAGAAAAGA+GGG | + | chr5_1:31082894-31082913 | Msa0727780:CDS | 35.0% | |
| ATTCACAAGCTATACCTTCA+CGG | - | chr5_1:31082928-31082947 | None:intergenic | 35.0% | |
| CTCAAGTTTCAACAGACGAT+TGG | + | chr5_1:31081691-31081710 | Msa0727780:CDS | 40.0% | |
| TTTAGGAATGTTGATCGTCG+TGG | + | chr5_1:31081932-31081951 | Msa0727780:intron | 40.0% | |
| CTTGAAATGTGTTACCCACA+TGG | + | chr5_1:31082184-31082203 | Msa0727780:intron | 40.0% | |
| ! | TTGGGCTAATGGTGTTAGTT+TGG | + | chr5_1:31082208-31082227 | Msa0727780:intron | 40.0% |
| ! | TGGGCTAATGGTGTTAGTTT+GGG | + | chr5_1:31082209-31082228 | Msa0727780:intron | 40.0% |
| TGTTCCCCTGTTAATGTTTC+AGG | + | chr5_1:31082241-31082260 | Msa0727780:intron | 40.0% | |
| GTAGAATACACATGGACAAG+GGG | + | chr5_1:31082778-31082797 | Msa0727780:intron | 40.0% | |
| TTCACAAGCTATACCTTCAC+GGG | - | chr5_1:31082927-31082946 | None:intergenic | 40.0% | |
| ACAAGCATGAGCCTTGAATT+TGG | - | chr5_1:31082973-31082992 | None:intergenic | 40.0% | |
| CTCAAGTTTCAACAGACGAT+TGG | + | chr5_1:31081691-31081710 | Msa0727780:CDS | 40.0% | |
| TTTAGGAATGTTGATCGTCG+TGG | + | chr5_1:31081932-31081951 | Msa0727780:intron | 40.0% | |
| CTTGAAATGTGTTACCCACA+TGG | + | chr5_1:31082184-31082203 | Msa0727780:intron | 40.0% | |
| ! | TTGGGCTAATGGTGTTAGTT+TGG | + | chr5_1:31082208-31082227 | Msa0727780:intron | 40.0% |
| ! | TGGGCTAATGGTGTTAGTTT+GGG | + | chr5_1:31082209-31082228 | Msa0727780:intron | 40.0% |
| TGTTCCCCTGTTAATGTTTC+AGG | + | chr5_1:31082241-31082260 | Msa0727780:intron | 40.0% | |
| GTAGAATACACATGGACAAG+GGG | + | chr5_1:31082778-31082797 | Msa0727780:intron | 40.0% | |
| TTCACAAGCTATACCTTCAC+GGG | - | chr5_1:31082927-31082946 | None:intergenic | 40.0% | |
| ACAAGCATGAGCCTTGAATT+TGG | - | chr5_1:31082973-31082992 | None:intergenic | 40.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | - | chr5_1:31081594-31081613 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | - | chr5_1:31082135-31082154 | None:intergenic | 45.0% | |
| AATGTGTTACCCACATGGGT+TGG | + | chr5_1:31082189-31082208 | Msa0727780:intron | 45.0% | |
| ATGTGTTACCCACATGGGTT+GGG | + | chr5_1:31082190-31082209 | Msa0727780:intron | 45.0% | |
| ! | ATGGTGTTAGTTTGGGACCT+TGG | + | chr5_1:31082216-31082235 | Msa0727780:intron | 45.0% |
| ATTAACAGGGGAACACTCCA+AGG | - | chr5_1:31082236-31082255 | None:intergenic | 45.0% | |
| GTTGGCACTCCAGGAAATAA+TGG | - | chr5_1:31081594-31081613 | None:intergenic | 45.0% | |
| ACAAAAGAGCAAGGCCTGAT+TGG | - | chr5_1:31082135-31082154 | None:intergenic | 45.0% | |
| AATGTGTTACCCACATGGGT+TGG | + | chr5_1:31082189-31082208 | Msa0727780:intron | 45.0% | |
| ATGTGTTACCCACATGGGTT+GGG | + | chr5_1:31082190-31082209 | Msa0727780:intron | 45.0% | |
| ! | ATGGTGTTAGTTTGGGACCT+TGG | + | chr5_1:31082216-31082235 | Msa0727780:intron | 45.0% |
| ATTAACAGGGGAACACTCCA+AGG | - | chr5_1:31082236-31082255 | None:intergenic | 45.0% | |
| ACTTCTACAGTTGGCACTCC+AGG | - | chr5_1:31081603-31081622 | None:intergenic | 50.0% | |
| ACCATTAGCCCAACCCATGT+GGG | - | chr5_1:31082201-31082220 | None:intergenic | 50.0% | |
| ACTTCTACAGTTGGCACTCC+AGG | - | chr5_1:31081603-31081622 | None:intergenic | 50.0% | |
| ACCATTAGCCCAACCCATGT+GGG | - | chr5_1:31082201-31082220 | None:intergenic | 50.0% | |
| !! | ACCCACATGGGTTGGGCTAA+TGG | + | chr5_1:31082197-31082216 | Msa0727780:intron | 55.0% |
| CACCATTAGCCCAACCCATG+TGG | - | chr5_1:31082202-31082221 | None:intergenic | 55.0% | |
| ! | AGAGGGAGTGTATCCCGTGA+AGG | + | chr5_1:31082911-31082930 | Msa0727780:CDS | 55.0% |
| !! | ACCCACATGGGTTGGGCTAA+TGG | + | chr5_1:31082197-31082216 | Msa0727780:intron | 55.0% |
| CACCATTAGCCCAACCCATG+TGG | - | chr5_1:31082202-31082221 | None:intergenic | 55.0% | |
| ! | AGAGGGAGTGTATCCCGTGA+AGG | + | chr5_1:31082911-31082930 | Msa0727780:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 31081566 | 31083006 | 31081566 | ID=Msa0727780;Name=Msa0727780 |
| chr5_1 | mRNA | 31081566 | 31083006 | 31081566 | ID=Msa0727780-mRNA-1;Parent=Msa0727780;Name=Msa0727780-mRNA-1;_AED=0.41;_eAED=0.41;_QI=0|0|0|1|1|1|2|0|126 |
| chr5_1 | exon | 31081566 | 31081721 | 31081566 | ID=Msa0727780-mRNA-1:exon:10266;Parent=Msa0727780-mRNA-1 |
| chr5_1 | exon | 31082782 | 31083006 | 31082782 | ID=Msa0727780-mRNA-1:exon:10267;Parent=Msa0727780-mRNA-1 |
| chr5_1 | CDS | 31081566 | 31081721 | 31081566 | ID=Msa0727780-mRNA-1:cds;Parent=Msa0727780-mRNA-1 |
| chr5_1 | CDS | 31082782 | 31083006 | 31082782 | ID=Msa0727780-mRNA-1:cds;Parent=Msa0727780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
