Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728660 | KEH43046.1 | 75.234 | 428 | 78 | 3 | 1 | 423 | 1 | 405 | 0.0 | 632 |
| Msa0728660 | KEH43046.1 | 87.793 | 213 | 26 | 0 | 422 | 634 | 478 | 690 | 1.60e-120 | 395 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728660 | sp|Q9M297|CLSY1_ARATH | 50.000 | 218 | 96 | 3 | 428 | 633 | 612 | 828 | 2.19e-59 | 219 |
| Msa0728660 | sp|Q9M297|CLSY1_ARATH | 38.532 | 218 | 116 | 6 | 40 | 254 | 14 | 216 | 5.01e-33 | 139 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728660 | A0A072VN36 | 75.234 | 428 | 78 | 3 | 1 | 423 | 1 | 405 | 0.0 | 632 |
| Msa0728660 | A0A072VN36 | 87.793 | 213 | 26 | 0 | 422 | 634 | 478 | 690 | 7.66e-121 | 395 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0728660 | TR | SNF2 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728660 | MtrunA17_Chr1g0191141 | 79.016 | 386 | 76 | 2 | 43 | 423 | 7 | 392 | 0.0 | 608 |
| Msa0728660 | MtrunA17_Chr1g0191141 | 87.793 | 213 | 26 | 0 | 422 | 634 | 465 | 677 | 9.85e-125 | 395 |
| Msa0728660 | MtrunA17_Chr3g0114161 | 41.667 | 480 | 166 | 11 | 42 | 407 | 23 | 502 | 5.09e-93 | 312 |
| Msa0728660 | MtrunA17_Chr3g0114161 | 65.315 | 222 | 68 | 3 | 422 | 634 | 599 | 820 | 1.66e-84 | 288 |
| Msa0728660 | MtrunA17_Chr7g0224051 | 69.091 | 220 | 60 | 2 | 422 | 633 | 471 | 690 | 7.26e-92 | 308 |
| Msa0728660 | MtrunA17_Chr7g0224051 | 42.647 | 408 | 169 | 15 | 70 | 421 | 1 | 399 | 7.69e-74 | 257 |
| Msa0728660 | MtrunA17_Chr5g0437621 | 62.778 | 180 | 66 | 1 | 455 | 633 | 695 | 874 | 9.48e-67 | 238 |
| Msa0728660 | MtrunA17_Chr5g0437621 | 45.020 | 251 | 115 | 7 | 44 | 283 | 19 | 257 | 1.82e-46 | 177 |
| Msa0728660 | MtrunA17_Chr7g0224021 | 68.142 | 113 | 34 | 1 | 449 | 561 | 1 | 111 | 4.13e-47 | 162 |
| Msa0728660 | MtrunA17_Chr7g0233021 | 42.857 | 133 | 71 | 2 | 442 | 569 | 614 | 746 | 5.83e-29 | 123 |
| Msa0728660 | MtrunA17_Chr7g0225791 | 45.455 | 110 | 59 | 1 | 461 | 569 | 698 | 807 | 4.49e-28 | 120 |
| Msa0728660 | MtrunA17_Chr7g0233031 | 36.184 | 152 | 91 | 2 | 421 | 566 | 612 | 763 | 5.36e-28 | 120 |
| Msa0728660 | MtrunA17_Chr7g0232991 | 43.382 | 136 | 68 | 4 | 442 | 569 | 30 | 164 | 2.20e-27 | 117 |
| Msa0728660 | MtrunA17_Chr4g0047081 | 44.545 | 110 | 60 | 1 | 461 | 569 | 648 | 757 | 1.01e-26 | 116 |
| Msa0728660 | MtrunA17_Chr7g0232971 | 45.299 | 117 | 59 | 3 | 458 | 569 | 695 | 811 | 1.51e-26 | 115 |
| Msa0728660 | MtrunA17_Chr2g0296421 | 38.462 | 130 | 66 | 3 | 454 | 580 | 484 | 602 | 1.10e-19 | 94.0 |
| Msa0728660 | MtrunA17_Chr8g0352361 | 36.429 | 140 | 73 | 4 | 444 | 580 | 326 | 452 | 2.20e-19 | 92.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728660 | AT3G42670.2 | 50.000 | 218 | 96 | 3 | 428 | 633 | 612 | 828 | 2.23e-60 | 219 |
| Msa0728660 | AT3G42670.2 | 38.532 | 218 | 116 | 6 | 40 | 254 | 14 | 216 | 5.09e-34 | 139 |
| Msa0728660 | AT3G42670.3 | 50.000 | 218 | 96 | 3 | 428 | 633 | 612 | 828 | 2.23e-60 | 219 |
| Msa0728660 | AT3G42670.3 | 38.532 | 218 | 116 | 6 | 40 | 254 | 14 | 216 | 5.09e-34 | 139 |
| Msa0728660 | AT3G42670.1 | 50.000 | 218 | 96 | 3 | 428 | 633 | 612 | 828 | 2.23e-60 | 219 |
| Msa0728660 | AT3G42670.1 | 38.532 | 218 | 116 | 6 | 40 | 254 | 14 | 216 | 5.09e-34 | 139 |
| Msa0728660 | AT3G42670.4 | 50.000 | 218 | 96 | 3 | 428 | 633 | 614 | 830 | 2.24e-60 | 219 |
| Msa0728660 | AT3G42670.4 | 38.532 | 218 | 116 | 6 | 40 | 254 | 14 | 216 | 5.33e-34 | 139 |
| Msa0728660 | AT5G20420.1 | 58.382 | 173 | 71 | 1 | 462 | 633 | 662 | 834 | 4.31e-59 | 215 |
| Msa0728660 | AT5G20420.1 | 36.546 | 249 | 131 | 7 | 44 | 285 | 18 | 246 | 7.38e-37 | 148 |
| Msa0728660 | AT1G05490.1 | 39.073 | 151 | 85 | 3 | 426 | 569 | 765 | 915 | 4.71e-30 | 127 |
| Msa0728660 | AT3G24340.1 | 40.000 | 120 | 71 | 1 | 451 | 569 | 549 | 668 | 1.35e-26 | 116 |
| Msa0728660 | AT2G16390.2 | 35.878 | 131 | 64 | 2 | 434 | 564 | 317 | 427 | 5.82e-18 | 89.0 |
| Msa0728660 | AT2G16390.1 | 35.878 | 131 | 64 | 2 | 434 | 564 | 314 | 424 | 5.91e-18 | 89.0 |
| Msa0728660 | AT2G21450.1 | 42.045 | 88 | 40 | 1 | 477 | 564 | 263 | 339 | 1.20e-16 | 84.7 |
| Msa0728660 | AT2G21450.2 | 42.045 | 88 | 40 | 1 | 477 | 564 | 270 | 346 | 1.20e-16 | 84.7 |
| Msa0728660 | AT2G21450.3 | 42.045 | 88 | 40 | 1 | 477 | 564 | 172 | 248 | 1.56e-16 | 84.0 |
Find 92 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTTGATACCATTAGAATT+TGG | 0.209817 | 5_1:+33672677 | None:intergenic |
| CCAGGTAGAACCATTGATTT+TGG | 0.226511 | 5_1:+33672704 | None:intergenic |
| CCACAATCTAGGTTACTTTC+CGG | 0.284693 | 5_1:-33674653 | Msa0728660:CDS |
| CAAGATTGTGTATGAAGTTA+TGG | 0.284889 | 5_1:-33674552 | Msa0728660:CDS |
| CCAAAGAAAATGACAGTGTT+TGG | 0.290902 | 5_1:-33673066 | Msa0728660:CDS |
| TAATGGTATCAAGCATGATT+TGG | 0.292292 | 5_1:-33672669 | Msa0728660:CDS |
| TGTTACCGCGTCATCTTTAA+AGG | 0.296633 | 5_1:-33674603 | Msa0728660:CDS |
| GGTAGGTGGAAAGGCTAAAA+TGG | 0.309089 | 5_1:-33673192 | Msa0728660:intron |
| TTGAAGTTCAAAACATTCAT+AGG | 0.322383 | 5_1:+33674506 | None:intergenic |
| AATTCCAGGTCTTGGGAAAC+TGG | 0.325777 | 5_1:+33675130 | None:intergenic |
| TCAACTGATGCTACTAATCT+TGG | 0.333239 | 5_1:-33673100 | Msa0728660:CDS |
| TATTCATAGTCATTTGTTAT+CGG | 0.364821 | 5_1:-33675195 | Msa0728660:CDS |
| GAGTGGTCCAAAGGTTAATA+AGG | 0.365464 | 5_1:-33674465 | Msa0728660:CDS |
| CGTCTTTCTTCACTGATAGT+TGG | 0.366946 | 5_1:+33674095 | None:intergenic |
| CCTTCTTCATCACATGATAA+TGG | 0.368117 | 5_1:+33674371 | None:intergenic |
| GCTCTTCATTGCCACAATCT+AGG | 0.368231 | 5_1:-33674664 | Msa0728660:CDS |
| ACGATCAAGAAAAGCTATTT+CGG | 0.372328 | 5_1:-33675162 | Msa0728660:CDS |
| TTGTGCATGGATGAAATTTA+CGG | 0.383973 | 5_1:+33675220 | None:intergenic |
| TAGCCCATGACAAGAACAAT+AGG | 0.384093 | 5_1:+33672611 | None:intergenic |
| TTCATAGGACCACTAATATT+AGG | 0.384672 | 5_1:+33674521 | None:intergenic |
| TATATGTCAATTCCAGGTCT+TGG | 0.387531 | 5_1:+33675122 | None:intergenic |
| CATGTGTAGAGTGTGGTCTT+TGG | 0.395080 | 5_1:+33672809 | None:intergenic |
| CACAATCTAGGTTACTTTCC+GGG | 0.397509 | 5_1:-33674652 | Msa0728660:CDS |
| CCTGGAGTTCCAAATTCTAA+TGG | 0.399610 | 5_1:-33672686 | Msa0728660:CDS |
| GATGTAATTGACAATCTTGT+AGG | 0.401236 | 5_1:-33675409 | Msa0728660:intron |
| TTGGTGTCGTCGAATGTCTC+TGG | 0.405539 | 5_1:+33672723 | None:intergenic |
| AAGAAAGAGGATAATGTGAT+TGG | 0.408479 | 5_1:-33674800 | Msa0728660:CDS |
| GTCTTTGGAGCTAGGACTAA+TGG | 0.409580 | 5_1:+33672824 | None:intergenic |
| CACCCTATTGTTCTTGTCAT+GGG | 0.413983 | 5_1:-33672614 | Msa0728660:CDS |
| CAAAGAAAATGACAGTGTTT+GGG | 0.414944 | 5_1:-33673065 | Msa0728660:CDS |
| AAGAAAAGAGATGGTGAGAA+AGG | 0.416344 | 5_1:+33672880 | None:intergenic |
| AAGATTGTGTATGAAGTTAT+GGG | 0.424794 | 5_1:-33674551 | Msa0728660:CDS |
| GGCAATTATCCTAATATTAG+TGG | 0.431684 | 5_1:-33674530 | Msa0728660:CDS |
| ACACCCTATTGTTCTTGTCA+TGG | 0.436213 | 5_1:-33672615 | Msa0728660:CDS |
| TAACTAGATGTGTTATGCAT+TGG | 0.457030 | 5_1:-33675463 | Msa0728660:intron |
| AGCACATATATGTCAATTCC+AGG | 0.458031 | 5_1:+33675116 | None:intergenic |
| GATAATGGAGACTCATTGTA+TGG | 0.461722 | 5_1:+33674386 | None:intergenic |
| ATATCTCATGCTCCTGGAGC+TGG | 0.462480 | 5_1:-33672908 | Msa0728660:CDS |
| ATATGTCAATTCCAGGTCTT+GGG | 0.464471 | 5_1:+33675123 | None:intergenic |
| GCGGTTCTGTAAGGAGCATA+TGG | 0.471624 | 5_1:-33674300 | Msa0728660:CDS |
| TATCGATGATCATAAAGAAC+AGG | 0.472137 | 5_1:-33674213 | Msa0728660:CDS |
| CCATTAGAATTTGGAACTCC+AGG | 0.476634 | 5_1:+33672686 | None:intergenic |
| AGAGTGTGGTCTTTGGAGCT+AGG | 0.489103 | 5_1:+33672816 | None:intergenic |
| GCAGAAGAAAGAAAACGTAT+TGG | 0.496020 | 5_1:-33674066 | Msa0728660:CDS |
| TGCTCCAGTTTCCCAAGACC+TGG | 0.500563 | 5_1:-33675134 | Msa0728660:CDS |
| AATAAGGAAAATCAGTTGAC+TGG | 0.505533 | 5_1:-33674449 | Msa0728660:CDS |
| ACGAAGAAGGCGGTTCTGTA+AGG | 0.505948 | 5_1:-33674309 | Msa0728660:CDS |
| AACTTCAAATCCTGTGATGA+TGG | 0.524328 | 5_1:-33674491 | Msa0728660:CDS |
| TAACAATTTCTGCACGAAGA+AGG | 0.525323 | 5_1:-33674322 | Msa0728660:CDS |
| TGTGTTATATCTCATGCTCC+TGG | 0.525908 | 5_1:-33672914 | Msa0728660:CDS |
| GAAACAAAGCAGTGAACATA+CGG | 0.535472 | 5_1:-33673158 | Msa0728660:CDS |
| TGGATAAGATACACCGGCAT+GGG | 0.541181 | 5_1:+33672758 | None:intergenic |
| TTGGATCTTCTTCAGATGGT+AGG | 0.545112 | 5_1:+33674114 | None:intergenic |
| ATAGTTGGATCTTCTTCAGA+TGG | 0.550685 | 5_1:+33674110 | None:intergenic |
| GGAAGTAATTGATGCTTACA+TGG | 0.555455 | 5_1:-33674150 | Msa0728660:CDS |
| AGCATCAATTACTTCCTCGC+AGG | 0.555873 | 5_1:+33674157 | None:intergenic |
| CCAAAATCAATGGTTCTACC+TGG | 0.556365 | 5_1:-33672704 | Msa0728660:CDS |
| ATATCCAATGGTAGGTGGAA+AGG | 0.558302 | 5_1:-33673201 | Msa0728660:intron |
| GTCTCTGGCTTCGACAGATG+TGG | 0.558594 | 5_1:+33672738 | None:intergenic |
| TTCGACGACACCAAAATCAA+TGG | 0.558930 | 5_1:-33672714 | Msa0728660:CDS |
| TTACGATAATTAGCATCGAA+TGG | 0.560548 | 5_1:+33675776 | None:intergenic |
| ACCACTCTTACCATCATCAC+AGG | 0.562701 | 5_1:+33674481 | None:intergenic |
| AGCCCATGACAAGAACAATA+GGG | 0.568333 | 5_1:+33672612 | None:intergenic |
| GGTTTCATATGTCATAAGAT+CGG | 0.570324 | 5_1:-33674582 | Msa0728660:CDS |
| AAGCAGTGTTGAATCACTCA+TGG | 0.571957 | 5_1:-33675283 | Msa0728660:CDS |
| CCATTATCATGTGATGAAGA+AGG | 0.574271 | 5_1:-33674371 | Msa0728660:CDS |
| AAAATGGAATGTTCCCATGC+CGG | 0.580266 | 5_1:-33672771 | Msa0728660:CDS |
| CTTCAACGAAATAACTGTGA+AGG | 0.592014 | 5_1:-33674749 | Msa0728660:CDS |
| ATAACTTACAAGAAAAGAGA+TGG | 0.597163 | 5_1:+33672871 | None:intergenic |
| CCGGAAAGTAACCTAGATTG+TGG | 0.605716 | 5_1:+33674653 | None:intergenic |
| TATGATGATCAAGGTTCACA+TGG | 0.609118 | 5_1:-33674842 | Msa0728660:CDS |
| GTATACAAAAGATCAAAAGC+AGG | 0.610004 | 5_1:-33672643 | Msa0728660:CDS |
| CGTATTGGAAAGCGGTGGTG+AGG | 0.610073 | 5_1:-33674051 | Msa0728660:intron |
| AGATGACGCGGTAACAAACC+AGG | 0.611437 | 5_1:+33674610 | None:intergenic |
| CAAAGACCACACTCTACACA+TGG | 0.613075 | 5_1:-33672808 | Msa0728660:CDS |
| AAAATCACACTGAAAGCGCA+TGG | 0.616805 | 5_1:-33672548 | Msa0728660:CDS |
| CATAAAGAACAGGATCATAG+AGG | 0.617267 | 5_1:-33674203 | Msa0728660:CDS |
| GTGGATAAGATACACCGGCA+TGG | 0.619432 | 5_1:+33672757 | None:intergenic |
| CAACTATCAGTGAAGAAAGA+CGG | 0.622612 | 5_1:-33674094 | Msa0728660:CDS |
| GAACATTTATTATATTTGTG+AGG | 0.623911 | 5_1:+33674887 | None:intergenic |
| CAATTTCTGCACGAAGAAGG+CGG | 0.628751 | 5_1:-33674319 | Msa0728660:CDS |
| TGATGGTAAGAGTGGTCCAA+AGG | 0.634249 | 5_1:-33674474 | Msa0728660:CDS |
| TCCTGTGATGATGGTAAGAG+TGG | 0.654377 | 5_1:-33674482 | Msa0728660:CDS |
| GAATCACTCATGGCAACCTG+TGG | 0.660741 | 5_1:-33675273 | Msa0728660:CDS |
| AAAGAACAGGATCATAGAGG+TGG | 0.669391 | 5_1:-33674200 | Msa0728660:CDS |
| TAGATTGTGGCAATGAAGAG+CGG | 0.677170 | 5_1:+33674666 | None:intergenic |
| AAAGAAAACGTATTGGAAAG+CGG | 0.682656 | 5_1:-33674059 | Msa0728660:CDS |
| CAGATGTGGATAAGATACAC+CGG | 0.687722 | 5_1:+33672752 | None:intergenic |
| TTATCATGTGATGAAGAAGG+TGG | 0.694141 | 5_1:-33674368 | Msa0728660:CDS |
| TGAAACCTTTAAAGATGACG+CGG | 0.702218 | 5_1:+33674598 | None:intergenic |
| GAAAACGTATTGGAAAGCGG+TGG | 0.722789 | 5_1:-33674056 | Msa0728660:CDS |
| GTTAAATGCTGATACCTGCG+AGG | 0.758695 | 5_1:-33674171 | Msa0728660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATGACAATTATGATTTAT+AGG | - | chr5_1:33674595-33674614 | Msa0728660:CDS | 15.0% |
| !!! | GATTTAAATACTTTGTTTTT+TGG | - | chr5_1:33674650-33674669 | Msa0728660:CDS | 15.0% |
| !!! | TTGATGCAAATAACTTTTTT+CGG | + | chr5_1:33672554-33672573 | None:intergenic | 20.0% |
| !! | AAAAAAGTTATTTGCATCAA+TGG | - | chr5_1:33672554-33672573 | Msa0728660:CDS | 20.0% |
| !! | AATCATGATTAATGTCTTAT+TGG | + | chr5_1:33672863-33672882 | None:intergenic | 20.0% |
| !! | TGTTTAGAAATAAGAATTAG+AGG | + | chr5_1:33673049-33673068 | None:intergenic | 20.0% |
| !!! | TATTCATAGTCATTTGTTAT+CGG | - | chr5_1:33673164-33673183 | Msa0728660:CDS | 20.0% |
| !! | GAACATTTATTATATTTGTG+AGG | + | chr5_1:33673475-33673494 | None:intergenic | 20.0% |
| !!! | TATGGATTCGATAATTTTAT+TGG | - | chr5_1:33674077-33674096 | Msa0728660:CDS | 20.0% |
| !!! | GTAAAACATTTTATACAGAT+AGG | + | chr5_1:33674500-33674519 | None:intergenic | 20.0% |
| !!! | TGGTTTTATCTTCTATTTTA+AGG | - | chr5_1:33674670-33674689 | Msa0728660:CDS | 20.0% |
| !!! | TAATTACAAGTTTGAAATCA+TGG | + | chr5_1:33675034-33675053 | None:intergenic | 20.0% |
| !!! | AAAAAGCTTTTCAATTTCTT+TGG | - | chr5_1:33675359-33675378 | Msa0728660:intron | 20.0% |
| !!! | TTTATTTTCTGTTCTCATTA+AGG | + | chr5_1:33675788-33675807 | None:intergenic | 20.0% |
| !!! | TGATGCAAATAACTTTTTTC+GGG | + | chr5_1:33672553-33672572 | None:intergenic | 25.0% |
| ! | TTTATTATCATACATGCATG+AGG | - | chr5_1:33672629-33672648 | Msa0728660:CDS | 25.0% |
| ! | ATTCGATAATAGCGTTATAA+TGG | - | chr5_1:33672732-33672751 | Msa0728660:CDS | 25.0% |
| !! | GTATGATATATTTAAGATGC+CGG | - | chr5_1:33672815-33672834 | Msa0728660:CDS | 25.0% |
| ! | AGTTTATGTTAATCAGTTAC+CGG | + | chr5_1:33672837-33672856 | None:intergenic | 25.0% |
| ! | AACTCATAAAAATTGAGTCT+GGG | - | chr5_1:33673109-33673128 | Msa0728660:CDS | 25.0% |
| ! | GTAAGAAGATTGAATTTACT+GGG | + | chr5_1:33673308-33673327 | None:intergenic | 25.0% |
| ! | AGTAAGAAGATTGAATTTAC+TGG | + | chr5_1:33673309-33673328 | None:intergenic | 25.0% |
| !!! | GTAAAGTTTTATGATGATCA+AGG | - | chr5_1:33673508-33673527 | Msa0728660:intron | 25.0% |
| !! | AATAAAAACTCTGAAGAAAG+AGG | - | chr5_1:33673546-33673565 | Msa0728660:intron | 25.0% |
| !!! | AGTTATTTCGTTGAAGTTTT+TGG | + | chr5_1:33673606-33673625 | None:intergenic | 25.0% |
| !! | GTTCAGAAGTTAATTCTTTT+AGG | - | chr5_1:33673653-33673672 | Msa0728660:intron | 25.0% |
| !!! | AGAAGTTAATTCTTTTAGGT+GGG | - | chr5_1:33673657-33673676 | Msa0728660:intron | 25.0% |
| ! | AAGATTGTGTATGAAGTTAT+GGG | - | chr5_1:33673808-33673827 | Msa0728660:intron | 25.0% |
| ! | TTGAAGTTCAAAACATTCAT+AGG | + | chr5_1:33673856-33673875 | None:intergenic | 25.0% |
| !! | TGATTTTCCTTATTAACCTT+TGG | + | chr5_1:33673904-33673923 | None:intergenic | 25.0% |
| !!! | AAGGTGGTTATATTGTTTTT+CGG | - | chr5_1:33674007-33674026 | Msa0728660:intron | 25.0% |
| ! | ACAAGTAAAAGACAAGAAAT+GGG | + | chr5_1:33674439-33674458 | None:intergenic | 25.0% |
| ! | ACTGTCAACAAAATCATAAT+CGG | - | chr5_1:33674520-33674539 | Msa0728660:CDS | 25.0% |
| !!! | ATCTTCTATTTTAAGGCTAA+AGG | - | chr5_1:33674677-33674696 | Msa0728660:CDS | 25.0% |
| !! | GTTTTTACTTGACTTACAAT+GGG | + | chr5_1:33674880-33674899 | None:intergenic | 25.0% |
| !! | AGTTTTTACTTGACTTACAA+TGG | + | chr5_1:33674881-33674900 | None:intergenic | 25.0% |
| !! | AAGTTTCAAAGTGTAACTTT+TGG | + | chr5_1:33674973-33674992 | None:intergenic | 25.0% |
| !! | TGTAACTTTAGTTCCTTATT+TGG | - | chr5_1:33675058-33675077 | Msa0728660:intron | 25.0% |
| ! | AAAACATATCCAACCAAATA+AGG | + | chr5_1:33675074-33675093 | None:intergenic | 25.0% |
| ! | GTTGTCTAATTTATATCCAA+TGG | - | chr5_1:33675146-33675165 | Msa0728660:CDS | 25.0% |
| ! | TCTAATTTATATCCAATGGT+AGG | - | chr5_1:33675150-33675169 | Msa0728660:CDS | 25.0% |
| !!! | GAAATTGAAAAGCTTTTTTC+TGG | + | chr5_1:33675357-33675376 | None:intergenic | 25.0% |
| ! | ATAACTTACAAGAAAAGAGA+TGG | + | chr5_1:33675491-33675510 | None:intergenic | 25.0% |
| ! | TTACGATAATTAGCATCGAA+TGG | + | chr5_1:33672586-33672605 | None:intergenic | 30.0% |
| !! | AGCGTTATAATGGATATTCA+TGG | - | chr5_1:33672742-33672761 | Msa0728660:CDS | 30.0% |
| ! | GATATATGTGTCTAACTTGT+TGG | - | chr5_1:33672777-33672796 | Msa0728660:CDS | 30.0% |
| TAACTAGATGTGTTATGCAT+TGG | - | chr5_1:33672896-33672915 | Msa0728660:CDS | 30.0% | |
| GATGTAATTGACAATCTTGT+AGG | - | chr5_1:33672950-33672969 | Msa0728660:CDS | 30.0% | |
| ! | TCAATTTTTATGAGTTCCAC+AGG | + | chr5_1:33673105-33673124 | None:intergenic | 30.0% |
| GAACTCATAAAAATTGAGTC+TGG | - | chr5_1:33673108-33673127 | Msa0728660:CDS | 30.0% | |
| TTGTGCATGGATGAAATTTA+CGG | + | chr5_1:33673142-33673161 | None:intergenic | 30.0% | |
| ! | GACTATGAATATTTTGTGCA+TGG | + | chr5_1:33673155-33673174 | None:intergenic | 30.0% |
| ACGATCAAGAAAAGCTATTT+CGG | - | chr5_1:33673197-33673216 | Msa0728660:intron | 30.0% | |
| AAGAAAGAGGATAATGTGAT+TGG | - | chr5_1:33673559-33673578 | Msa0728660:intron | 30.0% | |
| !! | TATTTCGTTGAAGTTTTTGG+AGG | + | chr5_1:33673603-33673622 | None:intergenic | 30.0% |
| ! | CAGAAGTTAATTCTTTTAGG+TGG | - | chr5_1:33673656-33673675 | Msa0728660:intron | 30.0% |
| GGTTTCATATGTCATAAGAT+CGG | - | chr5_1:33673777-33673796 | Msa0728660:intron | 30.0% | |
| CAAGATTGTGTATGAAGTTA+TGG | - | chr5_1:33673807-33673826 | Msa0728660:intron | 30.0% | |
| GGCAATTATCCTAATATTAG+TGG | - | chr5_1:33673829-33673848 | Msa0728660:intron | 30.0% | |
| TTCATAGGACCACTAATATT+AGG | + | chr5_1:33673841-33673860 | None:intergenic | 30.0% | |
| AATAAGGAAAATCAGTTGAC+TGG | - | chr5_1:33673910-33673929 | Msa0728660:intron | 30.0% | |
| !! | AGGTGGTTATATTGTTTTTC+GGG | - | chr5_1:33674008-33674027 | Msa0728660:intron | 30.0% |
| TATCGATGATCATAAAGAAC+AGG | - | chr5_1:33674146-33674165 | Msa0728660:CDS | 30.0% | |
| AAAGAAAACGTATTGGAAAG+CGG | - | chr5_1:33674300-33674319 | Msa0728660:CDS | 30.0% | |
| TATATGTCAGTCAAATCATC+AGG | + | chr5_1:33674342-33674361 | None:intergenic | 30.0% | |
| GACTGACATATAGAAAGAAA+TGG | - | chr5_1:33674350-33674369 | Msa0728660:CDS | 30.0% | |
| ACATCAAGTTATCTTCTTGA+TGG | - | chr5_1:33674384-33674403 | Msa0728660:CDS | 30.0% | |
| TTATCTTCTTGATGGAAATG+AGG | - | chr5_1:33674392-33674411 | Msa0728660:CDS | 30.0% | |
| GACAAGTAAAAGACAAGAAA+TGG | + | chr5_1:33674440-33674459 | None:intergenic | 30.0% | |
| TTCAACCATAAATGGTTCAA+CGG | + | chr5_1:33674558-33674577 | None:intergenic | 30.0% | |
| ! | TAGTTGACTTCAACCATAAA+TGG | + | chr5_1:33674566-33674585 | None:intergenic | 30.0% |
| AACTCTTAAATACCATAGCA+GGG | - | chr5_1:33674712-33674731 | Msa0728660:CDS | 30.0% | |
| TGACACAAATAAAGAATCCA+AGG | - | chr5_1:33674759-33674778 | Msa0728660:CDS | 30.0% | |
| ATGTGAACATGATTATCGAT+TGG | - | chr5_1:33674786-33674805 | Msa0728660:CDS | 30.0% | |
| ! | TATCGATTGGATGAACAAAT+TGG | - | chr5_1:33674799-33674818 | Msa0728660:CDS | 30.0% |
| ! | TTACAAGTTTGAAATCATGG+TGG | + | chr5_1:33675031-33675050 | None:intergenic | 30.0% |
| ! | ACTTTAGTTCCTTATTTGGT+TGG | - | chr5_1:33675062-33675081 | Msa0728660:intron | 30.0% |
| ! | TTGTTACACGTTTTCTCATT+TGG | - | chr5_1:33675124-33675143 | Msa0728660:CDS | 30.0% |
| AATTTATATCCAATGGTAGG+TGG | - | chr5_1:33675153-33675172 | Msa0728660:CDS | 30.0% | |
| !!! | CTGTCATTTTCTTTGGATAT+TGG | + | chr5_1:33675289-33675308 | None:intergenic | 30.0% |
| CAAAGAAAATGACAGTGTTT+GGG | - | chr5_1:33675294-33675313 | Msa0728660:intron | 30.0% | |
| ! | TTTCTTTGGAAAAACATTGC+AGG | - | chr5_1:33675373-33675392 | Msa0728660:intron | 30.0% |
| ! | TTCTTTGGAAAAACATTGCA+GGG | - | chr5_1:33675374-33675393 | Msa0728660:intron | 30.0% |
| AAAGAAAAATCTGACACAAC+TGG | - | chr5_1:33675418-33675437 | Msa0728660:CDS | 30.0% | |
| TGCTTGATACCATTAGAATT+TGG | + | chr5_1:33675685-33675704 | None:intergenic | 30.0% | |
| TAATGGTATCAAGCATGATT+TGG | - | chr5_1:33675690-33675709 | Msa0728660:intron | 30.0% | |
| GTATACAAAAGATCAAAAGC+AGG | - | chr5_1:33675716-33675735 | Msa0728660:intron | 30.0% | |
| ATATGTCAATTCCAGGTCTT+GGG | + | chr5_1:33673239-33673258 | None:intergenic | 35.0% | |
| TATATGTCAATTCCAGGTCT+TGG | + | chr5_1:33673240-33673259 | None:intergenic | 35.0% | |
| AGCACATATATGTCAATTCC+AGG | + | chr5_1:33673246-33673265 | None:intergenic | 35.0% | |
| TATGATGATCAAGGTTCACA+TGG | - | chr5_1:33673517-33673536 | Msa0728660:intron | 35.0% | |
| CTTCAACGAAATAACTGTGA+AGG | - | chr5_1:33673610-33673629 | Msa0728660:intron | 35.0% | |
| !! | TTCTTTTAGGTGGGATTCAT+CGG | - | chr5_1:33673666-33673685 | Msa0728660:intron | 35.0% |
| AAGATCAGACAAAAACTTCC+CGG | + | chr5_1:33673728-33673747 | None:intergenic | 35.0% | |
| ! | AGTTTTTGTCTGATCTTTCC+TGG | - | chr5_1:33673731-33673750 | Msa0728660:intron | 35.0% |
| ! | TGAAACCTTTAAAGATGACG+CGG | + | chr5_1:33673764-33673783 | None:intergenic | 35.0% |
| AACTTCAAATCCTGTGATGA+TGG | - | chr5_1:33673868-33673887 | Msa0728660:intron | 35.0% | |
| !! | GATAATGGAGACTCATTGTA+TGG | + | chr5_1:33673976-33673995 | None:intergenic | 35.0% |
| CCTTCTTCATCACATGATAA+TGG | + | chr5_1:33673991-33674010 | None:intergenic | 35.0% | |
| CCATTATCATGTGATGAAGA+AGG | - | chr5_1:33673988-33674007 | Msa0728660:intron | 35.0% | |
| TTATCATGTGATGAAGAAGG+TGG | - | chr5_1:33673991-33674010 | Msa0728660:intron | 35.0% | |
| TAACAATTTCTGCACGAAGA+AGG | - | chr5_1:33674037-33674056 | Msa0728660:intron | 35.0% | |
| CATAAAGAACAGGATCATAG+AGG | - | chr5_1:33674156-33674175 | Msa0728660:CDS | 35.0% | |
| GGAAGTAATTGATGCTTACA+TGG | - | chr5_1:33674209-33674228 | Msa0728660:CDS | 35.0% | |
| ATAGTTGGATCTTCTTCAGA+TGG | + | chr5_1:33674252-33674271 | None:intergenic | 35.0% | |
| CAACTATCAGTGAAGAAAGA+CGG | - | chr5_1:33674265-33674284 | Msa0728660:CDS | 35.0% | |
| GCAGAAGAAAGAAAACGTAT+TGG | - | chr5_1:33674293-33674312 | Msa0728660:CDS | 35.0% | |
| ATTGACCGTTGAACCATTTA+TGG | - | chr5_1:33674550-33674569 | Msa0728660:CDS | 35.0% | |
| CAACTCTTAAATACCATAGC+AGG | - | chr5_1:33674711-33674730 | Msa0728660:CDS | 35.0% | |
| ATCATGTTCACATGTTTCCT+TGG | + | chr5_1:33674779-33674798 | None:intergenic | 35.0% | |
| !! | TAACTTTTGGAAAATCGCAG+TGG | + | chr5_1:33674960-33674979 | None:intergenic | 35.0% |
| GAAACAAAGCAGTGAACATA+CGG | - | chr5_1:33675201-33675220 | Msa0728660:CDS | 35.0% | |
| TCAACTGATGCTACTAATCT+TGG | - | chr5_1:33675259-33675278 | Msa0728660:CDS | 35.0% | |
| !!! | CCAAACACTGTCATTTTCTT+TGG | + | chr5_1:33675296-33675315 | None:intergenic | 35.0% |
| CCAAAGAAAATGACAGTGTT+TGG | - | chr5_1:33675293-33675312 | Msa0728660:intron | 35.0% | |
| !! | TGCATGTTTTCTTTGAGTTC+AGG | + | chr5_1:33675328-33675347 | None:intergenic | 35.0% |
| AAGAAAAGAGATGGTGAGAA+AGG | + | chr5_1:33675482-33675501 | None:intergenic | 35.0% | |
| GGCAAAAAGAGTTCGAAAAA+TGG | - | chr5_1:33675572-33675591 | Msa0728660:intron | 35.0% | |
| ! | AAGCAGTGTTGAATCACTCA+TGG | - | chr5_1:33673076-33673095 | Msa0728660:CDS | 40.0% |
| TAGATTGTGGCAATGAAGAG+CGG | + | chr5_1:33673696-33673715 | None:intergenic | 40.0% | |
| ! | CCACAATCTAGGTTACTTTC+CGG | - | chr5_1:33673706-33673725 | Msa0728660:intron | 40.0% |
| ! | CACAATCTAGGTTACTTTCC+GGG | - | chr5_1:33673707-33673726 | Msa0728660:intron | 40.0% |
| TGTTACCGCGTCATCTTTAA+AGG | - | chr5_1:33673756-33673775 | Msa0728660:intron | 40.0% | |
| GAGTGGTCCAAAGGTTAATA+AGG | - | chr5_1:33673894-33673913 | Msa0728660:intron | 40.0% | |
| AAAGAACAGGATCATAGAGG+TGG | - | chr5_1:33674159-33674178 | Msa0728660:CDS | 40.0% | |
| TTGGATCTTCTTCAGATGGT+AGG | + | chr5_1:33674248-33674267 | None:intergenic | 40.0% | |
| CGTCTTTCTTCACTGATAGT+TGG | + | chr5_1:33674267-33674286 | None:intergenic | 40.0% | |
| TGAGGTGTGTGACTGAAATT+TGG | - | chr5_1:33674410-33674429 | Msa0728660:CDS | 40.0% | |
| ! | TTTTCACAAAGCCGCATGTA+CGG | + | chr5_1:33674834-33674853 | None:intergenic | 40.0% |
| !! | GTTTGAAATCATGGTGGATC+TGG | + | chr5_1:33675025-33675044 | None:intergenic | 40.0% |
| ATATCCAATGGTAGGTGGAA+AGG | - | chr5_1:33675158-33675177 | Msa0728660:CDS | 40.0% | |
| GAAAAACATTGCAGGGTCTA+TGG | - | chr5_1:33675381-33675400 | Msa0728660:intron | 40.0% | |
| GAAAAATCTGACACAACTGG+TGG | - | chr5_1:33675421-33675440 | Msa0728660:CDS | 40.0% | |
| TGTGTTATATCTCATGCTCC+TGG | - | chr5_1:33675445-33675464 | Msa0728660:CDS | 40.0% | |
| ! | TTTTTGCCATGTGTAGAGTG+TGG | + | chr5_1:33675560-33675579 | None:intergenic | 40.0% |
| AAAATGGAATGTTCCCATGC+CGG | - | chr5_1:33675588-33675607 | Msa0728660:intron | 40.0% | |
| CAGATGTGGATAAGATACAC+CGG | + | chr5_1:33675610-33675629 | None:intergenic | 40.0% | |
| TTCGACGACACCAAAATCAA+TGG | - | chr5_1:33675645-33675664 | Msa0728660:intron | 40.0% | |
| !!! | CCAGGTAGAACCATTGATTT+TGG | + | chr5_1:33675658-33675677 | None:intergenic | 40.0% |
| ! | CCAAAATCAATGGTTCTACC+TGG | - | chr5_1:33675655-33675674 | Msa0728660:intron | 40.0% |
| ! | CCATTAGAATTTGGAACTCC+AGG | + | chr5_1:33675676-33675695 | None:intergenic | 40.0% |
| CCTGGAGTTCCAAATTCTAA+TGG | - | chr5_1:33675673-33675692 | Msa0728660:intron | 40.0% | |
| ACACCCTATTGTTCTTGTCA+TGG | - | chr5_1:33675744-33675763 | Msa0728660:intron | 40.0% | |
| CACCCTATTGTTCTTGTCAT+GGG | - | chr5_1:33675745-33675764 | Msa0728660:intron | 40.0% | |
| AGCCCATGACAAGAACAATA+GGG | + | chr5_1:33675750-33675769 | None:intergenic | 40.0% | |
| TAGCCCATGACAAGAACAAT+AGG | + | chr5_1:33675751-33675770 | None:intergenic | 40.0% | |
| ! | AAAATCACACTGAAAGCGCA+TGG | - | chr5_1:33675811-33675830 | Msa0728660:CDS | 40.0% |
| AATTCCAGGTCTTGGGAAAC+TGG | + | chr5_1:33673232-33673251 | None:intergenic | 45.0% | |
| GCTCTTCATTGCCACAATCT+AGG | - | chr5_1:33673695-33673714 | Msa0728660:intron | 45.0% | |
| CCGGAAAGTAACCTAGATTG+TGG | + | chr5_1:33673709-33673728 | None:intergenic | 45.0% | |
| !! | TCCTGTGATGATGGTAAGAG+TGG | - | chr5_1:33673877-33673896 | Msa0728660:intron | 45.0% |
| ACCACTCTTACCATCATCAC+AGG | + | chr5_1:33673881-33673900 | None:intergenic | 45.0% | |
| TGATGGTAAGAGTGGTCCAA+AGG | - | chr5_1:33673885-33673904 | Msa0728660:intron | 45.0% | |
| CAATTTCTGCACGAAGAAGG+CGG | - | chr5_1:33674040-33674059 | Msa0728660:intron | 45.0% | |
| GTTAAATGCTGATACCTGCG+AGG | - | chr5_1:33674188-33674207 | Msa0728660:CDS | 45.0% | |
| AGCATCAATTACTTCCTCGC+AGG | + | chr5_1:33674205-33674224 | None:intergenic | 45.0% | |
| GAAAACGTATTGGAAAGCGG+TGG | - | chr5_1:33674303-33674322 | Msa0728660:CDS | 45.0% | |
| GGAATATACTGCCGTACATG+CGG | - | chr5_1:33674820-33674839 | Msa0728660:CDS | 45.0% | |
| ! | TTAGCCTTTCCACCTACCAT+TGG | + | chr5_1:33675165-33675184 | None:intergenic | 45.0% |
| GGTAGGTGGAAAGGCTAAAA+TGG | - | chr5_1:33675167-33675186 | Msa0728660:CDS | 45.0% | |
| ! | AGAAAGGTTTTTCCAGCTCC+AGG | + | chr5_1:33675466-33675485 | None:intergenic | 45.0% |
| !! | GTCTTTGGAGCTAGGACTAA+TGG | + | chr5_1:33675538-33675557 | None:intergenic | 45.0% |
| CATGTGTAGAGTGTGGTCTT+TGG | + | chr5_1:33675553-33675572 | None:intergenic | 45.0% | |
| CAAAGACCACACTCTACACA+TGG | - | chr5_1:33675551-33675570 | Msa0728660:intron | 45.0% | |
| TGGATAAGATACACCGGCAT+GGG | + | chr5_1:33675604-33675623 | None:intergenic | 45.0% | |
| !! | TATATAAAAAAAATTATCAT+TGG | - | chr5_1:33672672-33672691 | Msa0728660:CDS | 5.0% |
| GAATCACTCATGGCAACCTG+TGG | - | chr5_1:33673086-33673105 | Msa0728660:CDS | 50.0% | |
| AGATGACGCGGTAACAAACC+AGG | + | chr5_1:33673752-33673771 | None:intergenic | 50.0% | |
| ACGAAGAAGGCGGTTCTGTA+AGG | - | chr5_1:33674050-33674069 | Msa0728660:intron | 50.0% | |
| ! | GCGGTTCTGTAAGGAGCATA+TGG | - | chr5_1:33674059-33674078 | Msa0728660:CDS | 50.0% |
| TCAGCATTTGCACCCTGCTA+TGG | + | chr5_1:33674727-33674746 | None:intergenic | 50.0% | |
| ATATCTCATGCTCCTGGAGC+TGG | - | chr5_1:33675451-33675470 | Msa0728660:CDS | 50.0% | |
| !! | AGAGTGTGGTCTTTGGAGCT+AGG | + | chr5_1:33675546-33675565 | None:intergenic | 50.0% |
| GTGGATAAGATACACCGGCA+TGG | + | chr5_1:33675605-33675624 | None:intergenic | 50.0% | |
| !! | TTGGTGTCGTCGAATGTCTC+TGG | + | chr5_1:33675639-33675658 | None:intergenic | 50.0% |
| TGCTCCAGTTTCCCAAGACC+TGG | - | chr5_1:33673225-33673244 | Msa0728660:intron | 55.0% | |
| CGTATTGGAAAGCGGTGGTG+AGG | - | chr5_1:33674308-33674327 | Msa0728660:CDS | 55.0% | |
| GCAGGGTGCAAATGCTGATG+AGG | - | chr5_1:33674729-33674748 | Msa0728660:CDS | 55.0% | |
| ! | GTCTCTGGCTTCGACAGATG+TGG | + | chr5_1:33675624-33675643 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 33672544 | 33675837 | 33672544 | ID=Msa0728660;Name=Msa0728660 |
| chr5_1 | mRNA | 33672544 | 33675837 | 33672544 | ID=Msa0728660-mRNA-1;Parent=Msa0728660;Name=Msa0728660-mRNA-1;_AED=0.25;_eAED=0.27;_QI=0|0|0|0.6|1|1|5|0|642 |
| chr5_1 | exon | 33675780 | 33675837 | 33675780 | ID=Msa0728660-mRNA-1:exon:10731;Parent=Msa0728660-mRNA-1 |
| chr5_1 | exon | 33675410 | 33675478 | 33675410 | ID=Msa0728660-mRNA-1:exon:10730;Parent=Msa0728660-mRNA-1 |
| chr5_1 | exon | 33675073 | 33675311 | 33675073 | ID=Msa0728660-mRNA-1:exon:10729;Parent=Msa0728660-mRNA-1 |
| chr5_1 | exon | 33674052 | 33674948 | 33674052 | ID=Msa0728660-mRNA-1:exon:10728;Parent=Msa0728660-mRNA-1 |
| chr5_1 | exon | 33672544 | 33673209 | 33672544 | ID=Msa0728660-mRNA-1:exon:10727;Parent=Msa0728660-mRNA-1 |
| chr5_1 | CDS | 33675780 | 33675837 | 33675780 | ID=Msa0728660-mRNA-1:cds;Parent=Msa0728660-mRNA-1 |
| chr5_1 | CDS | 33675410 | 33675478 | 33675410 | ID=Msa0728660-mRNA-1:cds;Parent=Msa0728660-mRNA-1 |
| chr5_1 | CDS | 33675073 | 33675311 | 33675073 | ID=Msa0728660-mRNA-1:cds;Parent=Msa0728660-mRNA-1 |
| chr5_1 | CDS | 33674052 | 33674948 | 33674052 | ID=Msa0728660-mRNA-1:cds;Parent=Msa0728660-mRNA-1 |
| chr5_1 | CDS | 33672544 | 33673209 | 33672544 | ID=Msa0728660-mRNA-1:cds;Parent=Msa0728660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
