AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0728710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728710 MtrunA17_Chr5g0421201 92.903 155 11 0 93 247 29 183 5.97e-102 293
Msa0728710 MtrunA17_Chr3g0117511 52.881 295 67 10 20 247 143 432 8.94e-92 277
Msa0728710 MtrunA17_Chr4g0058991 48.327 269 94 5 18 243 185 451 1.03e-68 218
Msa0728710 MtrunA17_Chr7g0228531 40.529 227 102 6 39 245 217 430 3.54e-43 151
Msa0728710 MtrunA17_Chr5g0429661 39.024 205 93 3 40 221 120 315 3.21e-41 144
Msa0728710 MtrunA17_Chr7g0228481 38.496 226 106 6 39 244 217 429 1.98e-35 130
Msa0728710 MtrunA17_Chr7g0238631 51.456 103 32 1 40 124 111 213 6.19e-29 114
Msa0728710 MtrunA17_Chr1g0157731 48.544 103 35 1 40 124 89 191 4.36e-28 112
Msa0728710 MtrunA17_Chr3g0139671 46.078 102 37 1 40 123 83 184 1.19e-27 110
Msa0728710 MtrunA17_Chr7g0228401 39.474 152 46 3 39 144 252 403 1.81e-26 107
Msa0728710 MtrunA17_Chr7g0233061 44.604 139 52 4 38 153 176 312 1.21e-25 103
Msa0728710 MtrunA17_Chr1g0177901 43.411 129 48 3 52 155 4 132 6.08e-25 98.2
Msa0728710 MtrunA17_Chr5g0397841 42.735 117 44 2 19 117 92 203 1.20e-24 101
Msa0728710 MtrunA17_Chr4g0008551 47.525 101 35 1 41 123 37 137 2.61e-24 99.4
Msa0728710 MtrunA17_Chr3g0133601 43.396 106 42 1 36 123 31 136 4.83e-24 96.3
Msa0728710 MtrunA17_Chr5g0401731 43.269 104 41 1 41 126 14 117 1.97e-23 96.7
Msa0728710 MtrunA17_Chr4g0053431 43.269 104 41 1 41 126 4 107 2.76e-23 95.1
Msa0728710 MtrunA17_Chr4g0046181 67.857 56 18 0 39 94 218 273 3.97e-23 95.1
Msa0728710 MtrunA17_Chr3g0104501 49.524 105 37 2 6 94 81 185 8.13e-23 92.4
Msa0728710 MtrunA17_Chr3g0125801 45.794 107 37 2 42 127 16 122 2.05e-22 93.2
Msa0728710 MtrunA17_Chr1g0211161 32.812 192 101 5 37 208 10 193 2.89e-22 91.7
Msa0728710 MtrunA17_Chr7g0233161 51.111 90 38 1 11 94 262 351 1.77e-21 91.7
Msa0728710 MtrunA17_Chr6g0454921 39.423 104 45 1 41 126 14 117 2.14e-21 89.0
Msa0728710 MtrunA17_Chr7g0228891 32.796 186 79 6 27 192 7 166 2.19e-21 90.1
Msa0728710 MtrunA17_Chr7g0274581 40.000 120 45 3 27 127 7 118 2.45e-21 88.6
Msa0728710 MtrunA17_Chr5g0437321 42.857 98 38 1 41 120 18 115 2.84e-21 90.1
Msa0728710 MtrunA17_Chr4g0022911 44.340 106 38 3 38 123 11 115 5.89e-21 89.4
Msa0728710 MtrunA17_Chr7g0261281 29.825 228 125 6 37 232 9 233 5.94e-21 89.0
Msa0728710 MtrunA17_Chr4g0022901 43.925 107 39 3 37 123 10 115 7.64e-21 88.6
Msa0728710 MtrunA17_Chr8g0334881 40.000 110 46 2 34 123 4 113 1.34e-20 88.6
Msa0728710 MtrunA17_Chr2g0323411 44.340 106 40 2 37 123 9 114 1.55e-20 88.6
Msa0728710 MtrunA17_Chr1g0209661 37.705 122 57 2 40 142 27 148 2.12e-20 88.2
Msa0728710 MtrunA17_Chr2g0323351 42.105 114 45 3 36 129 8 120 3.06e-20 86.7
Msa0728710 MtrunA17_Chr2g0330041 42.202 109 42 3 36 124 8 115 3.21e-20 88.6
Msa0728710 MtrunA17_Chr4g0022931 43.363 113 41 4 37 127 10 121 3.69e-20 86.7
Msa0728710 MtrunA17_Chr8g0342521 42.623 122 48 4 36 136 8 128 3.77e-20 87.8
Msa0728710 MtrunA17_Chr3g0103281 32.065 184 77 5 37 201 9 163 4.06e-20 87.4
Msa0728710 MtrunA17_Chr7g0228231 43.878 98 36 2 39 117 13 110 4.84e-20 85.1
Msa0728710 MtrunA17_Chr1g0167661 31.780 236 109 9 37 245 9 219 5.05e-20 85.9
Msa0728710 MtrunA17_Chr4g0013361 42.857 112 42 3 40 131 10 119 5.39e-20 86.7
Msa0728710 MtrunA17_Chr5g0417621 41.509 106 44 1 38 125 130 235 6.36e-20 88.2
Msa0728710 MtrunA17_Chr8g0342541 42.202 109 42 3 36 124 8 115 6.45e-20 87.4
Msa0728710 MtrunA17_Chr6g0450101 39.496 119 51 3 40 138 14 131 6.74e-20 84.7
Msa0728710 MtrunA17_Chr4g0042501 41.748 103 42 1 41 125 104 206 6.89e-20 87.8
Msa0728710 MtrunA17_Chr4g0039971 46.078 102 34 3 36 117 9 109 7.78e-20 87.0
Msa0728710 MtrunA17_Chr1g0180391 46.000 100 33 3 38 117 17 115 1.12e-19 84.7
Msa0728710 MtrunA17_Chr5g0434571 43.548 124 45 5 27 127 33 154 1.25e-19 86.7
Msa0728710 MtrunA17_Chr6g0480581 42.056 107 41 2 42 127 4 110 1.31e-19 84.7
Msa0728710 MtrunA17_Chr1g0187761 40.708 113 38 4 27 119 7 110 1.37e-19 85.1
Msa0728710 MtrunA17_Chr3g0117091 40.179 112 46 3 37 128 9 119 1.50e-19 86.3
Msa0728710 MtrunA17_Chr4g0032401 41.228 114 47 3 30 123 6 119 1.50e-19 85.9
Msa0728710 MtrunA17_Chr5g0435101 41.441 111 46 2 36 127 7 117 1.89e-19 83.6
Msa0728710 MtrunA17_Chr1g0168661 46.875 96 30 3 42 117 23 117 2.21e-19 84.3
Msa0728710 MtrunA17_Chr7g0220341 43.243 111 42 2 28 117 13 123 2.65e-19 84.3
Msa0728710 MtrunA17_Chr6g0460661 37.391 115 49 2 32 123 1 115 3.09e-19 81.6
Msa0728710 MtrunA17_Chr3g0131121 44.828 116 42 4 37 131 9 123 4.12e-19 84.3
Msa0728710 MtrunA17_Chr2g0281071 43.564 101 38 2 42 123 15 115 4.15e-19 85.1
Msa0728710 MtrunA17_Chr1g0194291 38.182 110 49 2 27 117 8 117 4.33e-19 83.6
Msa0728710 MtrunA17_Chr5g0410961 42.056 107 43 2 40 127 12 118 4.36e-19 84.7
Msa0728710 MtrunA17_Chr4g0037141 36.416 173 81 6 37 181 9 180 4.48e-19 84.0
Msa0728710 MtrunA17_Chr3g0088461 43.925 107 41 2 36 123 18 124 5.43e-19 84.7
Msa0728710 MtrunA17_Chr8g0385321 41.379 116 48 3 37 132 9 124 5.60e-19 84.3
Msa0728710 MtrunA17_Chr4g0058631 31.156 199 110 6 37 214 9 201 6.23e-19 84.7
Msa0728710 MtrunA17_Chr2g0328771 43.564 101 38 2 42 123 22 122 7.60e-19 84.0
Msa0728710 MtrunA17_Chr3g0115821 45.098 102 35 3 36 117 8 108 8.64e-19 84.0
Msa0728710 MtrunA17_Chr7g0254261 34.000 150 74 3 42 167 89 237 9.23e-19 84.0
Msa0728710 MtrunA17_Chr1g0167691 42.718 103 38 3 37 119 9 110 1.04e-18 82.4
Msa0728710 MtrunA17_Chr7g0217741 36.306 157 65 6 27 156 7 155 1.15e-18 83.2
Msa0728710 MtrunA17_Chr5g0395281 42.718 103 38 3 35 117 7 108 1.27e-18 83.2
Msa0728710 MtrunA17_Chr5g0441131 37.500 112 50 2 32 123 1 112 1.45e-18 80.5
Msa0728710 MtrunA17_Chr3g0110351 41.322 121 42 4 27 127 7 118 1.71e-18 82.8
Msa0728710 MtrunA17_Chr8g0346561 41.818 110 37 3 27 117 7 108 1.75e-18 82.8
Msa0728710 MtrunA17_Chr4g0057031 42.857 112 43 3 36 127 8 118 1.89e-18 82.0
Msa0728710 MtrunA17_Chr5g0434931 30.208 192 108 4 32 201 31 218 2.00e-18 82.0
Msa0728710 MtrunA17_Chr8g0354661 34.969 163 78 7 40 175 37 198 2.03e-18 84.0
Msa0728710 MtrunA17_Chr2g0293911 34.921 126 62 3 22 128 6 130 2.40e-18 82.8
Msa0728710 MtrunA17_Chr3g0099131 42.593 108 40 4 38 124 39 145 2.43e-18 83.6
Msa0728710 MtrunA17_Chr4g0048511 42.574 101 39 2 42 123 15 115 2.64e-18 82.8
Msa0728710 MtrunA17_Chr6g0452271 37.838 111 50 2 36 127 8 118 2.69e-18 82.4
Msa0728710 MtrunA17_Chr6g0470971 38.843 121 55 2 37 138 11 131 2.80e-18 81.6
Msa0728710 MtrunA17_Chr4g0055981 36.434 129 63 2 37 146 52 180 2.81e-18 80.9
Msa0728710 MtrunA17_Chr8g0342481 38.760 129 56 5 36 142 8 135 2.85e-18 83.2
Msa0728710 MtrunA17_Chr3g0080861 40.351 114 46 4 31 123 28 140 2.87e-18 83.6
Msa0728710 MtrunA17_Chr1g0186061 44.792 96 32 3 42 117 22 116 2.90e-18 81.3
Msa0728710 MtrunA17_Chr5g0440781 41.176 102 40 2 42 123 14 115 3.42e-18 79.7
Msa0728710 MtrunA17_Chr8g0349261 43.689 103 38 2 35 117 8 110 3.69e-18 81.6
Msa0728710 MtrunA17_Chr4g0070611 41.000 100 40 2 37 117 9 108 3.83e-18 81.6
Msa0728710 MtrunA17_Chr4g0070641 32.544 169 74 5 37 183 9 159 4.32e-18 79.0
Msa0728710 MtrunA17_Chr5g0441141 41.176 102 40 2 42 123 14 115 4.42e-18 81.3
Msa0728710 MtrunA17_Chr5g0440761 41.748 103 38 3 42 123 14 115 4.58e-18 80.9
Msa0728710 MtrunA17_Chr8g0343831 43.810 105 39 3 32 117 1 104 5.41e-18 80.5
Msa0728710 MtrunA17_Chr7g0270891 32.335 167 90 4 37 183 9 172 5.95e-18 82.0
Msa0728710 MtrunA17_Chr1g0193371 43.564 101 36 3 37 117 9 108 6.98e-18 81.6
Msa0728710 MtrunA17_Chr7g0271241 43.564 101 36 3 37 117 9 108 7.84e-18 81.6
Msa0728710 MtrunA17_Chr5g0434911 37.500 120 56 2 28 128 9 128 8.04e-18 80.5
Msa0728710 MtrunA17_Chr1g0194301 42.857 98 35 3 40 117 33 129 8.60e-18 80.5
Msa0728710 MtrunA17_Chr2g0309911 38.525 122 53 4 37 137 8 128 9.16e-18 80.9
Msa0728710 MtrunA17_Chr7g0228991 30.675 163 94 2 40 183 29 191 1.04e-17 80.1
Msa0728710 MtrunA17_Chr4g0068921 37.069 116 44 3 31 117 5 120 1.10e-17 78.6
Msa0728710 MtrunA17_Chr1g0154031 42.857 98 35 3 40 117 76 172 1.11e-17 81.6
Msa0728710 MtrunA17_Chr5g0397231 39.604 101 42 2 36 117 8 108 1.20e-17 80.9
Msa0728710 MtrunA17_Chr2g0322521 40.187 107 43 3 37 123 26 131 1.22e-17 81.3
Msa0728710 MtrunA17_Chr2g0327821 39.091 110 46 3 40 129 6 114 1.38e-17 79.0
Msa0728710 MtrunA17_Chr8g0387421 36.607 112 52 2 36 128 8 119 1.68e-17 80.1
Msa0728710 MtrunA17_Chr4g0068061 36.752 117 47 3 27 124 7 115 1.77e-17 80.5
Msa0728710 MtrunA17_Chr4g0042671 40.909 110 38 3 27 117 7 108 1.90e-17 80.9
Msa0728710 MtrunA17_Chr1g0203411 39.831 118 47 5 37 131 9 125 2.21e-17 79.7
Msa0728710 MtrunA17_Chr5g0417821 45.263 95 33 2 42 117 9 103 2.72e-17 79.3
Msa0728710 MtrunA17_Chr6g0460671 40.952 105 41 3 41 124 98 202 2.82e-17 79.7
Msa0728710 MtrunA17_Chr4g0044421 36.885 122 58 2 42 144 14 135 2.84e-17 77.4
Msa0728710 MtrunA17_Chr4g0030881 38.596 114 44 3 42 129 9 122 3.89e-17 78.2
Msa0728710 MtrunA17_Chr1g0192411 33.571 140 70 4 32 149 1 139 4.01e-17 79.7
Msa0728710 MtrunA17_Chr7g0275911 39.091 110 40 3 27 117 7 108 4.18e-17 78.2
Msa0728710 MtrunA17_Chr1g0203441 40.000 105 44 2 42 127 15 119 6.00e-17 78.2
Msa0728710 MtrunA17_Chr1g0193801 41.000 100 40 2 37 117 9 108 7.02e-17 79.0
Msa0728710 MtrunA17_Chr2g0311221 41.584 101 40 2 36 117 10 110 9.68e-17 78.2
Msa0728710 MtrunA17_Chr1g0152011 40.196 102 41 3 36 117 8 109 1.24e-16 77.8
Msa0728710 MtrunA17_Chr3g0121241 37.838 111 40 4 27 117 37 138 1.55e-16 77.4
Msa0728710 MtrunA17_Chr5g0434841 36.000 125 60 3 24 128 3 127 1.62e-16 77.4
Msa0728710 MtrunA17_Chr5g0400821 41.176 102 40 3 36 117 8 109 1.93e-16 77.0
Msa0728710 MtrunA17_Chr4g0022891 37.500 104 44 3 36 119 8 110 2.12e-16 75.9
Msa0728710 MtrunA17_Chr7g0217221 28.571 196 101 6 36 193 8 202 2.59e-16 76.3
Msa0728710 MtrunA17_Chr5g0434831 38.679 106 46 2 42 128 9 114 2.81e-16 74.7
Msa0728710 MtrunA17_Chr2g0327351 40.594 101 40 3 37 117 9 109 4.28e-16 76.3
Msa0728710 MtrunA17_Chr4g0060721 38.182 110 49 2 37 127 10 119 6.30e-16 75.9
Msa0728710 MtrunA17_Chr7g0254411 35.878 131 54 4 27 135 7 129 6.68e-16 75.9
Msa0728710 MtrunA17_Chr3g0135311 39.216 102 42 3 36 117 8 109 7.46e-16 75.9
Msa0728710 MtrunA17_Chr7g0240821 45.161 93 30 3 45 117 6 97 1.06e-15 73.9
Msa0728710 MtrunA17_Chr4g0022881 37.864 103 45 2 36 119 8 110 1.89e-15 73.2
Msa0728710 MtrunA17_Chr6g0453471 35.833 120 50 3 27 127 7 118 2.17e-15 74.7
Msa0728710 MtrunA17_Chr1g0194951 37.500 120 47 4 27 126 7 118 2.23e-15 74.7
Msa0728710 MtrunA17_Chr4g0028311 33.333 117 58 3 36 132 8 124 2.23e-15 74.3
Msa0728710 MtrunA17_Chr4g0072751 40.594 101 40 3 37 117 9 109 2.25e-15 74.3
Msa0728710 MtrunA17_Chr8g0360111 36.036 111 52 2 28 119 13 123 2.84e-15 73.2
Msa0728710 MtrunA17_Chr7g0269831 37.705 122 48 4 27 128 7 120 2.93e-15 74.3
Msa0728710 MtrunA17_Chr3g0092401 34.167 120 52 3 27 127 8 119 3.06e-15 73.6
Msa0728710 MtrunA17_Chr6g0453211 37.624 101 44 2 36 117 8 108 4.60e-15 73.2
Msa0728710 MtrunA17_Chr6g0487491 32.558 129 59 3 36 136 8 136 5.38e-15 72.4
Msa0728710 MtrunA17_Chr4g0054391 37.255 102 44 3 36 117 8 109 7.15e-15 72.4
Msa0728710 MtrunA17_Chr7g0264641 37.255 102 44 3 36 117 8 109 1.31e-14 71.6
Msa0728710 MtrunA17_Chr1g0151941 31.707 164 85 7 36 179 8 164 3.24e-14 70.1
Msa0728710 MtrunA17_Chr3g0104491 37.838 111 27 3 42 144 19 95 3.45e-14 70.5
Msa0728710 MtrunA17_Chr7g0233151 53.968 63 26 1 94 153 21 83 5.11e-13 65.5
Msa0728710 MtrunA17_Chr7g0247131 40.426 94 22 2 75 150 14 91 9.88e-13 66.2
Msa0728710 MtrunA17_Chr7g0238651 37.255 102 43 3 44 124 9 110 1.39e-11 63.5
Msa0728710 MtrunA17_Chr5g0395221 43.548 62 34 1 35 95 7 68 1.74e-11 58.9
Msa0728710 MtrunA17_Chr5g0425591 41.538 65 37 1 32 95 1 65 2.60e-11 58.5
Msa0728710 MtrunA17_Chr8g0342511 47.619 63 30 2 36 96 8 69 2.98e-11 58.5
Msa0728710 MtrunA17_Chr5g0416341 33.663 101 47 2 45 125 29 129 4.98e-11 62.0
Msa0728710 MtrunA17_Chr8g0342531 47.619 63 30 2 36 96 8 69 7.75e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728710 AT4G18770.1 50.704 213 68 6 37 221 212 415 1.09e-57 189
Msa0728710 AT5G58850.1 39.921 253 93 9 2 210 57 294 7.11e-42 148
Msa0728710 AT3G27785.1 50.000 146 44 3 28 144 171 316 9.36e-40 142
Msa0728710 AT5G11050.1 60.909 110 25 1 39 130 102 211 9.72e-38 137
Msa0728710 AT5G40360.1 47.328 131 46 2 40 147 156 286 2.38e-33 124
Msa0728710 AT3G09370.2 46.457 127 43 3 19 125 117 238 4.76e-30 117
Msa0728710 AT3G09370.1 46.457 127 43 3 19 125 112 233 4.82e-30 117
Msa0728710 AT3G09370.3 45.968 124 44 2 19 124 125 243 6.02e-30 117
Msa0728710 AT5G11510.3 34.715 193 86 5 40 204 79 259 2.45e-29 116
Msa0728710 AT5G11510.1 34.715 193 86 5 40 204 79 259 2.45e-29 116
Msa0728710 AT5G11510.4 34.715 193 86 5 40 204 79 259 2.45e-29 116
Msa0728710 AT5G11510.5 34.715 193 86 5 40 204 79 259 2.46e-29 116
Msa0728710 AT5G11510.2 34.715 193 86 5 40 204 79 259 2.59e-29 116
Msa0728710 AT5G02320.1 47.009 117 39 2 19 117 109 220 5.13e-28 112
Msa0728710 AT5G02320.2 47.009 117 39 2 19 117 109 220 5.13e-28 112
Msa0728710 AT2G25230.1 40.764 157 63 4 13 147 4 152 6.47e-28 107
Msa0728710 AT4G32730.5 39.645 169 70 5 40 179 85 250 6.50e-28 112
Msa0728710 AT4G32730.4 39.645 169 70 5 40 179 85 250 6.50e-28 112
Msa0728710 AT4G32730.3 39.645 169 70 5 40 179 85 250 6.50e-28 112
Msa0728710 AT4G32730.2 39.645 169 70 5 40 179 85 250 6.50e-28 112
Msa0728710 AT5G02320.3 47.009 117 39 2 19 117 49 160 7.26e-28 111
Msa0728710 AT4G32730.1 37.363 182 82 3 40 201 85 254 7.66e-28 112
Msa0728710 AT3G09230.1 42.982 114 47 1 30 125 43 156 6.47e-24 99.4
Msa0728710 AT3G50060.1 43.269 104 41 1 41 126 5 108 3.74e-23 95.9
Msa0728710 AT3G55730.1 47.115 104 37 1 41 126 55 158 3.87e-23 97.1
Msa0728710 AT5G40430.1 39.552 134 55 4 37 147 49 179 4.71e-23 94.7
Msa0728710 AT2G23290.1 43.269 104 41 1 41 126 12 115 8.74e-23 95.1
Msa0728710 AT5G67300.1 42.342 111 43 2 41 130 5 115 1.79e-22 94.0
Msa0728710 AT4G37260.1 42.857 112 45 2 33 126 5 115 5.15e-22 93.2
Msa0728710 AT4G00540.2 49.000 100 30 2 39 117 100 199 1.04e-21 93.2
Msa0728710 AT2G39880.1 39.130 138 60 4 41 154 49 186 1.94e-21 92.0
Msa0728710 AT4G00540.1 44.348 115 41 3 39 132 98 210 2.13e-21 92.4
Msa0728710 AT3G60460.1 43.925 107 40 2 37 123 8 114 2.34e-21 90.9
Msa0728710 AT1G73410.1 43.925 107 39 2 42 127 6 112 2.48e-21 89.7
Msa0728710 AT1G73410.2 41.667 108 45 1 42 131 6 113 5.73e-21 87.8
Msa0728710 AT2G31180.1 40.310 129 48 4 27 135 7 126 7.00e-21 88.6
Msa0728710 AT5G59780.3 41.228 114 46 3 42 135 10 122 8.89e-21 88.2
Msa0728710 AT1G69560.1 40.000 110 48 1 34 125 99 208 9.52e-21 89.7
Msa0728710 AT1G69560.2 40.000 110 48 1 34 125 115 224 9.79e-21 89.7
Msa0728710 AT4G22680.1 35.152 165 69 5 36 180 8 154 1.07e-20 88.6
Msa0728710 AT3G46130.1 42.105 114 45 3 42 135 11 123 1.21e-20 88.2
Msa0728710 AT1G17950.1 43.363 113 42 3 42 133 5 116 1.88e-20 87.4
Msa0728710 AT1G06180.1 41.463 123 41 5 27 127 7 120 2.22e-20 87.4
Msa0728710 AT2G47190.1 35.878 131 65 2 33 144 13 143 2.38e-20 87.8
Msa0728710 AT3G27810.1 41.441 111 45 3 37 128 17 126 4.39e-20 85.9
Msa0728710 AT5G40350.1 42.991 107 41 3 38 125 15 120 6.06e-20 85.5
Msa0728710 AT3G01530.1 43.810 105 38 3 40 124 25 128 7.49e-20 85.1
Msa0728710 AT4G12350.1 40.909 132 56 4 40 150 12 142 8.69e-20 86.3
Msa0728710 AT4G28110.1 42.056 107 43 2 36 123 8 114 8.72e-20 86.3
Msa0728710 AT1G22640.1 39.370 127 57 3 37 143 9 135 8.90e-20 85.9
Msa0728710 AT3G13890.2 39.815 108 46 2 36 124 8 115 9.78e-20 87.4
Msa0728710 AT3G12720.1 28.340 247 116 9 37 232 19 255 1.20e-19 86.3
Msa0728710 AT5G16600.1 36.207 174 76 6 27 180 7 165 1.30e-19 86.7
Msa0728710 AT4G13480.1 41.667 132 50 5 42 153 8 132 1.32e-19 85.5
Msa0728710 AT1G74430.1 39.623 106 45 2 42 128 14 119 1.56e-19 85.5
Msa0728710 AT1G26780.1 43.137 102 40 1 42 125 98 199 1.73e-19 85.5
Msa0728710 AT1G26780.2 43.137 102 40 1 42 125 98 199 1.84e-19 86.7
Msa0728710 AT3G24310.1 43.478 115 39 5 42 135 20 129 2.59e-19 84.7
Msa0728710 AT2G26960.1 34.483 174 81 6 37 179 17 188 2.88e-19 86.7
Msa0728710 AT5G26660.1 36.986 146 68 5 37 159 9 153 3.54e-19 85.5
Msa0728710 AT4G33450.1 41.441 111 44 2 35 124 12 122 4.42e-19 84.0
Msa0728710 AT1G25340.1 38.525 122 56 2 42 144 20 141 4.49e-19 84.3
Msa0728710 AT5G14340.1 33.529 170 68 5 27 176 19 163 5.21e-19 84.0
Msa0728710 AT1G57560.2 35.065 154 68 4 37 170 9 150 5.27e-19 84.0
Msa0728710 AT3G28470.1 41.584 101 40 2 36 117 8 108 5.52e-19 84.7
Msa0728710 AT1G57560.1 41.071 112 45 3 37 128 9 119 6.01e-19 84.3
Msa0728710 AT3G29020.1 39.604 101 43 1 42 124 65 165 6.50e-19 83.2
Msa0728710 AT4G21440.1 41.121 107 44 2 37 124 9 115 6.75e-19 84.7
Msa0728710 AT5G10280.1 46.000 100 33 3 38 117 10 108 7.23e-19 84.7
Msa0728710 AT3G11440.2 39.286 112 48 3 33 124 34 145 7.40e-19 85.5
Msa0728710 AT5G40330.1 41.509 106 42 3 32 117 3 108 8.23e-19 82.4
Msa0728710 AT1G66230.1 42.149 121 41 4 27 127 7 118 8.55e-19 83.6
Msa0728710 AT3G02940.2 41.667 108 44 2 36 124 8 115 9.77e-19 84.0
Msa0728710 AT3G11440.3 39.286 112 48 3 33 124 34 145 9.93e-19 85.5
Msa0728710 AT3G11440.4 39.286 112 48 3 33 124 34 145 9.93e-19 85.5
Msa0728710 AT3G11440.1 39.286 112 48 3 33 124 34 145 9.93e-19 85.5
Msa0728710 AT5G14750.1 43.158 95 35 2 42 117 18 112 1.05e-18 81.6
Msa0728710 AT3G13890.1 37.607 117 45 3 36 124 8 124 1.22e-18 84.3
Msa0728710 AT3G29020.2 39.604 101 43 1 42 124 67 167 1.27e-18 83.6
Msa0728710 AT1G68320.1 35.135 148 72 4 42 169 21 164 1.27e-18 83.2
Msa0728710 AT1G25340.2 38.017 121 53 2 42 144 20 136 1.30e-18 83.2
Msa0728710 AT4G38620.1 41.129 124 51 4 37 139 9 131 1.32e-18 83.2
Msa0728710 AT3G02940.1 41.667 108 44 2 36 124 8 115 1.39e-18 83.6
Msa0728710 AT3G02940.3 41.667 108 44 2 36 124 8 115 1.39e-18 83.6
Msa0728710 AT1G09540.1 35.032 157 80 4 37 172 9 164 1.83e-18 83.6
Msa0728710 AT1G56160.1 43.137 102 37 3 36 117 10 110 1.96e-18 82.8
Msa0728710 AT3G08500.1 43.519 108 42 2 35 123 25 132 1.98e-18 83.6
Msa0728710 AT4G26930.1 38.532 109 47 3 42 131 21 128 2.06e-18 84.0
Msa0728710 AT3G30210.1 43.519 108 36 4 42 129 29 131 2.18e-18 82.4
Msa0728710 AT1G25340.3 38.017 121 53 2 42 144 20 136 2.33e-18 82.8
Msa0728710 AT5G56110.1 36.765 136 62 3 37 148 9 144 2.68e-18 82.8
Msa0728710 AT4G05100.1 41.509 106 43 2 37 123 10 115 2.74e-18 82.8
Msa0728710 AT3G23250.1 29.891 184 77 6 27 191 7 157 2.93e-18 82.0
Msa0728710 AT5G07690.1 45.263 95 33 2 42 117 14 108 3.02e-18 82.8
Msa0728710 AT3G13540.1 26.818 220 114 7 27 221 18 215 3.12e-18 81.6
Msa0728710 AT1G35515.1 39.640 111 48 2 37 128 9 119 3.48e-18 80.5
Msa0728710 AT5G65230.1 44.118 102 36 3 36 117 8 108 3.63e-18 82.4
Msa0728710 AT1G63910.1 35.714 126 56 3 36 136 8 133 5.95e-18 82.4
Msa0728710 AT2G26950.1 40.187 107 43 3 37 123 13 118 7.30e-18 82.0
Msa0728710 AT1G79180.1 41.346 104 40 3 36 119 10 112 7.79e-18 81.3
Msa0728710 AT4G25560.1 41.905 105 42 2 42 127 12 116 9.56e-18 80.9
Msa0728710 AT4G09460.1 42.593 108 41 3 37 124 9 115 1.07e-17 79.7
Msa0728710 AT5G49620.1 35.200 125 62 2 39 144 25 149 1.13e-17 80.9
Msa0728710 AT5G52600.1 41.818 110 41 3 27 117 3 108 1.25e-17 79.0
Msa0728710 AT5G16770.4 42.157 102 40 2 42 124 14 115 1.92e-17 80.5
Msa0728710 AT5G16770.3 42.157 102 40 2 42 124 14 115 1.92e-17 80.5
Msa0728710 AT5G54230.1 43.299 97 36 2 40 117 12 108 1.92e-17 80.5
Msa0728710 AT1G16490.1 37.273 110 50 2 36 126 10 119 2.10e-17 79.7
Msa0728710 AT2G16720.1 41.379 116 48 3 37 132 9 124 2.29e-17 79.3
Msa0728710 AT1G48000.1 33.099 142 72 3 40 162 32 169 2.31e-17 79.0
Msa0728710 AT5G61420.2 43.299 97 36 2 40 117 12 108 2.37e-17 80.5
Msa0728710 AT4G01680.3 34.228 149 77 4 37 165 9 156 2.38e-17 79.0
Msa0728710 AT5G12870.1 41.905 105 42 2 42 127 20 124 2.44e-17 79.7
Msa0728710 AT5G16770.1 42.157 102 40 2 42 124 14 115 2.53e-17 80.1
Msa0728710 AT5G16770.2 42.157 102 40 2 42 124 14 115 2.53e-17 80.1
Msa0728710 AT3G61250.1 37.063 143 64 5 36 157 8 145 2.83e-17 79.7
Msa0728710 AT2G32460.1 42.157 102 38 3 42 123 20 120 2.84e-17 80.9
Msa0728710 AT3G27920.1 41.053 95 37 2 42 117 16 110 2.97e-17 78.6
Msa0728710 AT2G32460.2 42.157 102 38 3 42 123 8 108 3.23e-17 80.9
Msa0728710 AT4G01680.1 34.228 149 77 4 37 165 9 156 3.98e-17 79.7
Msa0728710 AT3G01140.2 41.584 101 40 2 36 117 8 108 4.00e-17 79.7
Msa0728710 AT5G15310.1 41.584 101 40 2 36 117 8 108 4.72e-17 79.3
Msa0728710 AT3G01140.1 41.584 101 40 2 36 117 51 151 5.07e-17 79.7
Msa0728710 AT4G34990.1 40.541 111 47 2 37 128 9 119 5.52e-17 78.6
Msa0728710 AT5G35550.1 39.091 110 48 2 37 127 11 120 5.60e-17 78.2
Msa0728710 AT5G07700.1 43.158 95 35 2 42 117 14 108 5.60e-17 79.3
Msa0728710 AT5G07700.2 43.158 95 35 2 42 117 14 108 5.60e-17 79.3
Msa0728710 AT5G15310.2 41.584 101 40 2 36 117 8 108 5.67e-17 79.0
Msa0728710 AT5G55020.1 43.750 96 33 3 42 117 28 122 6.35e-17 80.1
Msa0728710 AT5G17800.1 37.069 116 52 2 42 136 93 208 6.75e-17 79.0
Msa0728710 AT1G74080.1 44.211 95 34 2 42 117 14 108 8.62e-17 78.6
Msa0728710 AT5G06100.1 35.385 130 58 4 40 143 32 161 1.04e-16 79.3
Msa0728710 AT5G15310.4 41.584 101 40 2 36 117 8 108 1.15e-16 77.0
Msa0728710 AT5G06100.5 35.938 128 56 4 42 143 34 161 1.34e-16 79.0
Msa0728710 AT5G06100.2 35.938 128 56 4 42 143 34 161 1.34e-16 79.0
Msa0728710 AT5G06100.3 35.938 128 56 4 42 143 34 161 1.34e-16 79.0
Msa0728710 AT5G06100.4 35.938 128 56 4 42 143 34 161 1.34e-16 79.0
Msa0728710 AT4G17785.2 41.905 105 40 3 40 124 13 116 1.49e-16 78.2
Msa0728710 AT4G17785.1 41.905 105 40 3 40 124 13 116 1.63e-16 78.2
Msa0728710 AT2G47460.1 33.113 151 73 4 27 157 7 149 1.68e-16 78.2
Msa0728710 AT5G52260.1 41.509 106 41 3 42 127 14 118 2.15e-16 76.6
Msa0728710 AT1G18570.1 39.623 106 45 2 42 128 15 120 2.67e-16 77.4
Msa0728710 AT5G62470.1 33.613 119 53 2 27 127 7 117 3.10e-16 77.4
Msa0728710 AT3G53200.1 36.220 127 52 4 42 140 11 136 4.00e-16 75.5
Msa0728710 AT3G48920.1 38.889 108 47 2 42 130 20 127 4.28e-16 75.9
Msa0728710 AT3G06490.1 39.796 98 38 3 40 117 19 115 6.63e-16 76.3
Msa0728710 AT5G57620.1 40.196 102 41 3 36 117 8 109 6.83e-16 76.3
Msa0728710 AT3G62610.1 40.000 110 39 3 27 117 7 108 8.75e-16 75.9
Msa0728710 AT1G66370.1 39.091 110 40 3 42 128 10 115 8.77e-16 74.7
Msa0728710 AT5G49620.2 31.655 139 62 2 39 144 25 163 8.83e-16 75.9
Msa0728710 AT4G01680.2 32.919 161 75 5 37 165 9 168 9.05e-16 75.9
Msa0728710 AT5G49330.1 35.714 126 54 3 27 133 7 124 9.21e-16 75.9
Msa0728710 AT5G60890.1 43.299 97 36 2 40 117 12 108 1.10e-15 75.1
Msa0728710 AT1G74650.1 36.207 116 55 2 37 133 9 124 1.39e-15 75.1
Msa0728710 AT3G49690.1 40.196 102 41 3 36 117 8 109 1.69e-15 74.7
Msa0728710 AT5G65790.1 40.196 102 41 3 36 117 8 109 1.70e-15 75.5
Msa0728710 AT1G34670.1 42.157 102 38 3 36 117 8 108 1.77e-15 75.1
Msa0728710 AT4G37780.1 37.255 102 44 3 36 117 8 109 2.45e-15 74.3
Msa0728710 AT1G66380.1 42.424 99 30 3 42 117 10 104 5.66e-15 70.1
Msa0728710 AT1G56650.1 40.741 108 35 4 42 124 10 113 6.39e-15 72.4
Msa0728710 AT1G08810.1 36.937 111 51 2 36 127 8 118 7.69e-15 72.8
Msa0728710 AT1G66390.1 40.741 108 35 4 42 124 10 113 9.85e-15 72.0
Msa0728710 AT5G62470.2 35.455 110 44 3 27 117 7 108 1.03e-14 72.8
Msa0728710 AT3G47600.1 35.135 111 53 2 36 127 8 118 1.09e-14 72.8
Msa0728710 AT5G62320.1 40.909 110 37 4 42 124 15 123 1.18e-14 71.6
Msa0728710 AT3G28910.1 35.135 111 53 2 36 127 8 118 1.70e-14 72.0
Msa0728710 AT1G18710.1 33.962 106 51 2 42 128 14 119 2.04e-14 71.2
Msa0728710 AT3G12820.1 38.053 113 49 3 36 128 10 121 2.72e-14 70.5
Msa0728710 AT5G23000.1 31.073 177 97 5 37 188 9 185 2.73e-14 71.6
Msa0728710 AT5G39700.1 37.374 99 44 1 43 123 57 155 2.77e-14 69.7
Msa0728710 AT1G79180.2 29.861 144 49 3 36 127 10 153 2.09e-13 68.9
Msa0728710 AT5G26660.2 34.375 128 52 4 53 159 6 122 3.02e-13 68.6
Msa0728710 AT3G18100.1 35.345 116 48 2 42 139 546 652 1.12e-12 67.8
Msa0728710 AT3G18100.4 35.345 116 48 2 42 139 385 491 1.65e-12 67.0
Msa0728710 AT3G18100.3 35.345 116 48 2 42 139 498 604 1.79e-12 67.0
Msa0728710 AT3G18100.2 35.345 116 48 2 42 139 333 439 2.20e-12 66.6
Msa0728710 AT2G36890.1 36.275 102 45 3 36 117 8 109 3.82e-12 65.1
Msa0728710 AT2G36890.2 36.275 102 45 3 36 117 49 150 4.57e-12 65.1
Msa0728710 AT3G27810.2 45.833 72 20 2 75 128 7 77 4.65e-12 63.2
Msa0728710 AT5G35550.2 46.479 71 20 1 75 127 53 123 6.90e-12 63.9
Msa0728710 AT5G40350.2 47.826 69 17 2 75 125 8 75 7.08e-12 62.4
Msa0728710 AT5G59780.2 39.241 79 30 1 75 135 23 101 9.92e-12 62.8
Msa0728710 AT3G46130.3 39.241 79 30 1 75 135 13 91 1.28e-11 62.8
Msa0728710 AT3G46130.4 39.241 79 30 1 75 135 23 101 1.64e-11 62.8
Msa0728710 AT3G53200.2 38.043 92 31 2 75 140 12 103 1.86e-11 62.0

Find 42 sgRNAs with CRISPR-Local

Find 212 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATGTTGGACTTATTGTTTC+TGG 0.208598 5_1:+33813914 None:intergenic
AAACAGGTTGTTGATAAATT+TGG 0.222494 5_1:-33813763 Msa0728710:intron
AACAATATGGATTGAGAAAA+TGG 0.259457 5_1:-33813737 Msa0728710:CDS
ATAAATTTGGTTGAACAATA+TGG 0.264742 5_1:-33813750 Msa0728710:CDS
GTTATGGAAAATTTCAGATT+TGG 0.289313 5_1:-33814014 Msa0728710:CDS
TCATCTAAGGCCAGATATTA+AGG 0.302440 5_1:-33813652 Msa0728710:intron
AATAAGTCCAACATTGTAAA+AGG 0.302515 5_1:-33813906 Msa0728710:CDS
TAAATATGCACCTTAATATC+TGG 0.361547 5_1:+33813642 None:intergenic
AGTTCTCCCAGGTAACCTTT+TGG 0.388296 5_1:+33812659 None:intergenic
TATCATCGAAACAAATATCT+AGG 0.397614 5_1:+33812370 None:intergenic
AGCGATGGATTAATCATCTA+AGG 0.404504 5_1:-33813665 Msa0728710:CDS
TTCTCTTTGTTGCATACCAA+TGG 0.423307 5_1:+33812619 None:intergenic
TCAGAAATTGCCTGGTAGAA+TGG 0.424216 5_1:-33813703 Msa0728710:CDS
CAGAAATTGCCTGGTAGAAT+GGG 0.430479 5_1:-33813702 Msa0728710:CDS
GATACTGTGCTTTGGTTGGT+TGG 0.451841 5_1:+33812459 None:intergenic
GCTTGAACAATCATTCTTCG+AGG 0.462613 5_1:-33813983 Msa0728710:CDS
GATGATAATTTGTTTCAAGA+TGG 0.462758 5_1:-33812354 Msa0728710:CDS
ACTGAGCTGATACTGTGCTT+TGG 0.465214 5_1:+33812451 None:intergenic
ATGATAATTTGTTTCAAGAT+GGG 0.473555 5_1:-33812353 Msa0728710:CDS
TAATGGTGATGCTTATGTTA+TGG 0.474007 5_1:-33814030 Msa0728710:exon
ATGGAGAGTTGGGAAACAAA+TGG 0.474382 5_1:-33812692 Msa0728710:intron
ATTGTTGAAGATACTATGCT+TGG 0.483599 5_1:-33812297 Msa0728710:CDS
TGGCAAACACTCGCTGTCAC+TGG 0.483623 5_1:+33812479 None:intergenic
TGGAGAGTTGGGAAACAAAT+GGG 0.485266 5_1:-33812691 Msa0728710:intron
AATGGACACTAGAAGAAGAT+AGG 0.491531 5_1:-33813881 Msa0728710:intron
AGCTGATACTGTGCTTTGGT+TGG 0.502136 5_1:+33812455 None:intergenic
AAGATTGCCAAAAGGTTACC+TGG 0.505167 5_1:-33812666 Msa0728710:CDS
GATATTGCTCAGAAATTGCC+TGG 0.518276 5_1:-33813711 Msa0728710:CDS
AGTTGATGTTAAGAAAGAGC+TGG 0.524954 5_1:-33812274 Msa0728710:CDS
TAGCAAACACTCACTGTCAC+TGG 0.528697 5_1:+33812419 None:intergenic
AAAACTCAATTAAGAACCAT+TGG 0.528712 5_1:-33812635 Msa0728710:CDS
CACTGTTTACCCATTCTACC+AGG 0.531074 5_1:+33813693 None:intergenic
TGTAGAAGAGTACTTCCACT+AGG 0.556277 5_1:+33812573 None:intergenic
CATATCTTATTGCAAAAGAG+TGG 0.560877 5_1:-33813943 Msa0728710:CDS
TATAATGTAGATAGTGGTAA+TGG 0.563421 5_1:-33814047 None:intergenic
AATGGGTAAAGATTGCCAAA+AGG 0.578915 5_1:-33812674 Msa0728710:CDS
GTAGAAGAGTACTTCCACTA+GGG 0.594021 5_1:+33812574 None:intergenic
CCAACATTGTAAAAGGACAA+TGG 0.619413 5_1:-33813899 Msa0728710:CDS
AGATTGCCAAAAGGTTACCT+GGG 0.630842 5_1:-33812665 Msa0728710:CDS
ATATCTTATTGCAAAAGAGT+GGG 0.633671 5_1:-33813942 Msa0728710:CDS
GTAAACAGTGTAGAGAGCGA+TGG 0.646917 5_1:-33813680 Msa0728710:CDS
AGTGAGTGTTTGCTATCAAG+TGG 0.700440 5_1:-33812411 Msa0728710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATATTTTTTACCAATT+TGG - chr5_1:33812460-33812479 Msa0728710:CDS 10.0%
!!! CATATAACTTTTTTTTATAA+AGG + chr5_1:33812751-33812770 None:intergenic 10.0%
!!! TTTTATATTTTTTACCAATT+TGG - chr5_1:33812460-33812479 Msa0728710:CDS 10.0%
!!! CATATAACTTTTTTTTATAA+AGG + chr5_1:33812751-33812770 None:intergenic 10.0%
!! AAATACTAAAAAAAGAATCA+GGG + chr5_1:33812672-33812691 None:intergenic 15.0%
!! AAATTCAATAAAAAAGAATC+AGG + chr5_1:33812722-33812741 None:intergenic 15.0%
!! ACTTACTATTAAAAGTTATT+AGG + chr5_1:33812982-33813001 None:intergenic 15.0%
!! TATTGAAAATAAATTTGTGT+TGG - chr5_1:33813075-33813094 Msa0728710:intron 15.0%
!! AAATACTAAAAAAAGAATCA+GGG + chr5_1:33812672-33812691 None:intergenic 15.0%
!! AAATTCAATAAAAAAGAATC+AGG + chr5_1:33812722-33812741 None:intergenic 15.0%
!! ACTTACTATTAAAAGTTATT+AGG + chr5_1:33812982-33813001 None:intergenic 15.0%
!! TATTGAAAATAAATTTGTGT+TGG - chr5_1:33813075-33813094 Msa0728710:intron 15.0%
!! ATAAATTTGGTTGAACAATA+TGG - chr5_1:33812532-33812551 Msa0728710:CDS 20.0%
!! AATACTAAAAAAAGAATCAG+GGG + chr5_1:33812671-33812690 None:intergenic 20.0%
!! GAAATACTAAAAAAAGAATC+AGG + chr5_1:33812673-33812692 None:intergenic 20.0%
!! AAAAATACCATCCTTAAAAT+TGG - chr5_1:33812848-33812867 Msa0728710:intron 20.0%
!! CCTATAAAAATCTAGATTAA+AGG + chr5_1:33812906-33812925 None:intergenic 20.0%
!!! CCTTTAATCTAGATTTTTAT+AGG - chr5_1:33812903-33812922 Msa0728710:intron 20.0%
!!! TATATTGATGATCTGATAAA+AGG - chr5_1:33813243-33813262 Msa0728710:intron 20.0%
!!! AAATTTTTTAAAATGCTAGC+TGG + chr5_1:33813469-33813488 None:intergenic 20.0%
!!! ATTTTCTTGTATACTCTTTT+GGG + chr5_1:33813771-33813790 None:intergenic 20.0%
!!! ATGATAATTTGTTTCAAGAT+GGG - chr5_1:33813929-33813948 Msa0728710:CDS 20.0%
!! ATAAATTTGGTTGAACAATA+TGG - chr5_1:33812532-33812551 Msa0728710:CDS 20.0%
!! AATACTAAAAAAAGAATCAG+GGG + chr5_1:33812671-33812690 None:intergenic 20.0%
!! GAAATACTAAAAAAAGAATC+AGG + chr5_1:33812673-33812692 None:intergenic 20.0%
!! AAAAATACCATCCTTAAAAT+TGG - chr5_1:33812848-33812867 Msa0728710:intron 20.0%
!! CCTATAAAAATCTAGATTAA+AGG + chr5_1:33812906-33812925 None:intergenic 20.0%
!!! CCTTTAATCTAGATTTTTAT+AGG - chr5_1:33812903-33812922 Msa0728710:intron 20.0%
!!! TATATTGATGATCTGATAAA+AGG - chr5_1:33813243-33813262 Msa0728710:intron 20.0%
!!! AAATTTTTTAAAATGCTAGC+TGG + chr5_1:33813469-33813488 None:intergenic 20.0%
!!! ATTTTCTTGTATACTCTTTT+GGG + chr5_1:33813771-33813790 None:intergenic 20.0%
!!! ATGATAATTTGTTTCAAGAT+GGG - chr5_1:33813929-33813948 Msa0728710:CDS 20.0%
! GTTATGGAAAATTTCAGATT+TGG - chr5_1:33812268-33812287 Msa0728710:CDS 25.0%
! ATATCTTATTGCAAAAGAGT+GGG - chr5_1:33812340-33812359 Msa0728710:CDS 25.0%
! AATAAGTCCAACATTGTAAA+AGG - chr5_1:33812376-33812395 Msa0728710:CDS 25.0%
!! AAACAGGTTGTTGATAAATT+TGG - chr5_1:33812519-33812538 Msa0728710:CDS 25.0%
!! AACAATATGGATTGAGAAAA+TGG - chr5_1:33812545-33812564 Msa0728710:CDS 25.0%
! TAAATATGCACCTTAATATC+TGG + chr5_1:33812643-33812662 None:intergenic 25.0%
! TGAAAATAAATTTGTGTTGG+TGG - chr5_1:33813078-33813097 Msa0728710:intron 25.0%
! GTATTACCTAGAAAAATGTT+TGG - chr5_1:33813168-33813187 Msa0728710:intron 25.0%
! TGAATGAATGTAGTGATATT+TGG - chr5_1:33813293-33813312 Msa0728710:intron 25.0%
! GAATGAATGTAGTGATATTT+GGG - chr5_1:33813294-33813313 Msa0728710:intron 25.0%
! AATGAATGTAGTGATATTTG+GGG - chr5_1:33813295-33813314 Msa0728710:intron 25.0%
! CTAACTCAACAATAGTATTT+GGG + chr5_1:33813324-33813343 None:intergenic 25.0%
! TCTAACTCAACAATAGTATT+TGG + chr5_1:33813325-33813344 None:intergenic 25.0%
! AAAATATTGATGAAAGCTCA+TGG - chr5_1:33813571-33813590 Msa0728710:intron 25.0%
! AAAACTCAATTAAGAACCAT+TGG - chr5_1:33813647-33813666 Msa0728710:intron 25.0%
!! TTTTCTTGTATACTCTTTTG+GGG + chr5_1:33813770-33813789 None:intergenic 25.0%
!! GATTTTCTTGTATACTCTTT+TGG + chr5_1:33813772-33813791 None:intergenic 25.0%
! TATCATCGAAACAAATATCT+AGG + chr5_1:33813915-33813934 None:intergenic 25.0%
!!! GATGATAATTTGTTTCAAGA+TGG - chr5_1:33813928-33813947 Msa0728710:CDS 25.0%
! GTTATGGAAAATTTCAGATT+TGG - chr5_1:33812268-33812287 Msa0728710:CDS 25.0%
! ATATCTTATTGCAAAAGAGT+GGG - chr5_1:33812340-33812359 Msa0728710:CDS 25.0%
! AATAAGTCCAACATTGTAAA+AGG - chr5_1:33812376-33812395 Msa0728710:CDS 25.0%
!! AAACAGGTTGTTGATAAATT+TGG - chr5_1:33812519-33812538 Msa0728710:CDS 25.0%
!! AACAATATGGATTGAGAAAA+TGG - chr5_1:33812545-33812564 Msa0728710:CDS 25.0%
! TAAATATGCACCTTAATATC+TGG + chr5_1:33812643-33812662 None:intergenic 25.0%
! TGAAAATAAATTTGTGTTGG+TGG - chr5_1:33813078-33813097 Msa0728710:intron 25.0%
! GTATTACCTAGAAAAATGTT+TGG - chr5_1:33813168-33813187 Msa0728710:intron 25.0%
! TGAATGAATGTAGTGATATT+TGG - chr5_1:33813293-33813312 Msa0728710:intron 25.0%
! GAATGAATGTAGTGATATTT+GGG - chr5_1:33813294-33813313 Msa0728710:intron 25.0%
! AATGAATGTAGTGATATTTG+GGG - chr5_1:33813295-33813314 Msa0728710:intron 25.0%
! CTAACTCAACAATAGTATTT+GGG + chr5_1:33813324-33813343 None:intergenic 25.0%
! TCTAACTCAACAATAGTATT+TGG + chr5_1:33813325-33813344 None:intergenic 25.0%
! AAAATATTGATGAAAGCTCA+TGG - chr5_1:33813571-33813590 Msa0728710:intron 25.0%
! AAAACTCAATTAAGAACCAT+TGG - chr5_1:33813647-33813666 Msa0728710:intron 25.0%
!! TTTTCTTGTATACTCTTTTG+GGG + chr5_1:33813770-33813789 None:intergenic 25.0%
!! GATTTTCTTGTATACTCTTT+TGG + chr5_1:33813772-33813791 None:intergenic 25.0%
! TATCATCGAAACAAATATCT+AGG + chr5_1:33813915-33813934 None:intergenic 25.0%
!!! GATGATAATTTGTTTCAAGA+TGG - chr5_1:33813928-33813947 Msa0728710:CDS 25.0%
! TAATGGTGATGCTTATGTTA+TGG - chr5_1:33812252-33812271 Msa0728710:CDS 30.0%
CATATCTTATTGCAAAAGAG+TGG - chr5_1:33812339-33812358 Msa0728710:CDS 30.0%
AATGTTGGACTTATTGTTTC+TGG + chr5_1:33812371-33812390 None:intergenic 30.0%
CTTGGATCAAAATTCCAAAT+TGG + chr5_1:33812477-33812496 None:intergenic 30.0%
!! TTTGGAATTTTGATCCAAGT+AGG - chr5_1:33812478-33812497 Msa0728710:CDS 30.0%
ATGTCTCTGTATGTAAAAAC+AGG - chr5_1:33812503-33812522 Msa0728710:CDS 30.0%
CAATAAAAAAGAATCAGGAG+AGG + chr5_1:33812717-33812736 None:intergenic 30.0%
AGAATTTCAAGATTGAACCT+AGG + chr5_1:33812806-33812825 None:intergenic 30.0%
AATACCATCCTTAAAATTGG+TGG - chr5_1:33812851-33812870 Msa0728710:intron 30.0%
!! AAAACCACCAATTTTAAGGA+TGG + chr5_1:33812858-33812877 None:intergenic 30.0%
! AGTGAAAACCACCAATTTTA+AGG + chr5_1:33812862-33812881 None:intergenic 30.0%
TCTATGCAATTAGACAAAGA+CGG - chr5_1:33812956-33812975 Msa0728710:intron 30.0%
CATCTATTCAACCTTCATTT+AGG + chr5_1:33813009-33813028 None:intergenic 30.0%
ACTATGTGTGTATATTTGCA+TGG + chr5_1:33813150-33813169 None:intergenic 30.0%
! AGTCTACCAAACATTTTTCT+AGG + chr5_1:33813177-33813196 None:intergenic 30.0%
!!! TATACTCTTTTGGGGTTTTT+TGG + chr5_1:33813762-33813781 None:intergenic 30.0%
ATTGTTGAAGATACTATGCT+TGG - chr5_1:33813985-33814004 Msa0728710:CDS 30.0%
!!! TTGATCGAGTTTTTTTACTC+AGG - chr5_1:33814033-33814052 Msa0728710:exon 30.0%
! TAATGGTGATGCTTATGTTA+TGG - chr5_1:33812252-33812271 Msa0728710:CDS 30.0%
CATATCTTATTGCAAAAGAG+TGG - chr5_1:33812339-33812358 Msa0728710:CDS 30.0%
AATGTTGGACTTATTGTTTC+TGG + chr5_1:33812371-33812390 None:intergenic 30.0%
CTTGGATCAAAATTCCAAAT+TGG + chr5_1:33812477-33812496 None:intergenic 30.0%
!! TTTGGAATTTTGATCCAAGT+AGG - chr5_1:33812478-33812497 Msa0728710:CDS 30.0%
ATGTCTCTGTATGTAAAAAC+AGG - chr5_1:33812503-33812522 Msa0728710:CDS 30.0%
CAATAAAAAAGAATCAGGAG+AGG + chr5_1:33812717-33812736 None:intergenic 30.0%
AGAATTTCAAGATTGAACCT+AGG + chr5_1:33812806-33812825 None:intergenic 30.0%
AATACCATCCTTAAAATTGG+TGG - chr5_1:33812851-33812870 Msa0728710:intron 30.0%
!! AAAACCACCAATTTTAAGGA+TGG + chr5_1:33812858-33812877 None:intergenic 30.0%
! AGTGAAAACCACCAATTTTA+AGG + chr5_1:33812862-33812881 None:intergenic 30.0%
TCTATGCAATTAGACAAAGA+CGG - chr5_1:33812956-33812975 Msa0728710:intron 30.0%
CATCTATTCAACCTTCATTT+AGG + chr5_1:33813009-33813028 None:intergenic 30.0%
ACTATGTGTGTATATTTGCA+TGG + chr5_1:33813150-33813169 None:intergenic 30.0%
! AGTCTACCAAACATTTTTCT+AGG + chr5_1:33813177-33813196 None:intergenic 30.0%
!!! TATACTCTTTTGGGGTTTTT+TGG + chr5_1:33813762-33813781 None:intergenic 30.0%
ATTGTTGAAGATACTATGCT+TGG - chr5_1:33813985-33814004 Msa0728710:CDS 30.0%
!!! TTGATCGAGTTTTTTTACTC+AGG - chr5_1:33814033-33814052 Msa0728710:exon 30.0%
! CCATTGTCCTTTTACAATGT+TGG + chr5_1:33812386-33812405 None:intergenic 35.0%
CCAACATTGTAAAAGGACAA+TGG - chr5_1:33812383-33812402 Msa0728710:CDS 35.0%
AATGGACACTAGAAGAAGAT+AGG - chr5_1:33812401-33812420 Msa0728710:CDS 35.0%
ATACAGAGACATAACCTACT+TGG + chr5_1:33812495-33812514 None:intergenic 35.0%
!! AGCGATGGATTAATCATCTA+AGG - chr5_1:33812617-33812636 Msa0728710:CDS 35.0%
! TCATCTAAGGCCAGATATTA+AGG - chr5_1:33812630-33812649 Msa0728710:CDS 35.0%
ACTAAAAAAAGAATCAGGGG+TGG + chr5_1:33812668-33812687 None:intergenic 35.0%
GTCACTAGCTAATGTACAAT+CGG + chr5_1:33812784-33812803 None:intergenic 35.0%
AGTAAGTGAGACCTAAATGA+AGG - chr5_1:33812995-33813014 Msa0728710:intron 35.0%
!! ATCTAAAGTGAGGGTTTTAG+TGG - chr5_1:33813101-33813120 Msa0728710:intron 35.0%
ATGTTTGGTAGACTTGTCAA+TGG - chr5_1:33813183-33813202 Msa0728710:intron 35.0%
AATGGGTAAAGATTGCCAAA+AGG - chr5_1:33813608-33813627 Msa0728710:intron 35.0%
TTCTCTTTGTTGCATACCAA+TGG + chr5_1:33813666-33813685 None:intergenic 35.0%
!! TCAAAAAGAAAGTACCCTAG+TGG - chr5_1:33813694-33813713 Msa0728710:CDS 35.0%
! AGTTGATGTTAAGAAAGAGC+TGG - chr5_1:33814008-33814027 Msa0728710:CDS 35.0%
! CCATTGTCCTTTTACAATGT+TGG + chr5_1:33812386-33812405 None:intergenic 35.0%
CCAACATTGTAAAAGGACAA+TGG - chr5_1:33812383-33812402 Msa0728710:CDS 35.0%
AATGGACACTAGAAGAAGAT+AGG - chr5_1:33812401-33812420 Msa0728710:CDS 35.0%
ATACAGAGACATAACCTACT+TGG + chr5_1:33812495-33812514 None:intergenic 35.0%
!! AGCGATGGATTAATCATCTA+AGG - chr5_1:33812617-33812636 Msa0728710:CDS 35.0%
! TCATCTAAGGCCAGATATTA+AGG - chr5_1:33812630-33812649 Msa0728710:CDS 35.0%
ACTAAAAAAAGAATCAGGGG+TGG + chr5_1:33812668-33812687 None:intergenic 35.0%
GTCACTAGCTAATGTACAAT+CGG + chr5_1:33812784-33812803 None:intergenic 35.0%
AGTAAGTGAGACCTAAATGA+AGG - chr5_1:33812995-33813014 Msa0728710:intron 35.0%
!! ATCTAAAGTGAGGGTTTTAG+TGG - chr5_1:33813101-33813120 Msa0728710:intron 35.0%
ATGTTTGGTAGACTTGTCAA+TGG - chr5_1:33813183-33813202 Msa0728710:intron 35.0%
AATGGGTAAAGATTGCCAAA+AGG - chr5_1:33813608-33813627 Msa0728710:intron 35.0%
TTCTCTTTGTTGCATACCAA+TGG + chr5_1:33813666-33813685 None:intergenic 35.0%
!! TCAAAAAGAAAGTACCCTAG+TGG - chr5_1:33813694-33813713 Msa0728710:CDS 35.0%
! AGTTGATGTTAAGAAAGAGC+TGG - chr5_1:33814008-33814027 Msa0728710:CDS 35.0%
GCTTGAACAATCATTCTTCG+AGG - chr5_1:33812299-33812318 Msa0728710:CDS 40.0%
GATATTGCTCAGAAATTGCC+TGG - chr5_1:33812571-33812590 Msa0728710:CDS 40.0%
TCAGAAATTGCCTGGTAGAA+TGG - chr5_1:33812579-33812598 Msa0728710:CDS 40.0%
CAGAAATTGCCTGGTAGAAT+GGG - chr5_1:33812580-33812599 Msa0728710:CDS 40.0%
TGTACATTAGCTAGTGACCT+AGG - chr5_1:33812786-33812805 Msa0728710:intron 40.0%
! TGGTTTTCACTAACCTAGCA+TGG - chr5_1:33812871-33812890 Msa0728710:intron 40.0%
! TGTTGGTGGATCTAAAGTGA+GGG - chr5_1:33813092-33813111 Msa0728710:intron 40.0%
AGTGGCATTATCCTTACCTT+TGG - chr5_1:33813119-33813138 Msa0728710:intron 40.0%
GTGGCATTATCCTTACCTTT+GGG - chr5_1:33813120-33813139 Msa0728710:intron 40.0%
TATTTGCATGGCAAACCCAA+AGG + chr5_1:33813138-33813157 None:intergenic 40.0%
!! CTAAAAGTACCCTCTTGTTG+TGG - chr5_1:33813511-33813530 Msa0728710:intron 40.0%
TGCAATAAGCCACAACAAGA+GGG + chr5_1:33813523-33813542 None:intergenic 40.0%
TTGTTGTGGCTTATTGCAGA+AGG - chr5_1:33813525-33813544 Msa0728710:intron 40.0%
GCTTATTGCAGAAGGACATA+TGG - chr5_1:33813533-33813552 Msa0728710:intron 40.0%
ATGAAAGCTCATGGAGAGTT+GGG - chr5_1:33813580-33813599 Msa0728710:intron 40.0%
ATGGAGAGTTGGGAAACAAA+TGG - chr5_1:33813590-33813609 Msa0728710:intron 40.0%
TGGAGAGTTGGGAAACAAAT+GGG - chr5_1:33813591-33813610 Msa0728710:intron 40.0%
AAGATTGCCAAAAGGTTACC+TGG - chr5_1:33813616-33813635 Msa0728710:intron 40.0%
AGATTGCCAAAAGGTTACCT+GGG - chr5_1:33813617-33813636 Msa0728710:intron 40.0%
! ATTGAGTTTTCAGTTCTCCC+AGG + chr5_1:33813637-33813656 None:intergenic 40.0%
!! GTAGAAGAGTACTTCCACTA+GGG + chr5_1:33813711-33813730 None:intergenic 40.0%
!! TGTAGAAGAGTACTTCCACT+AGG + chr5_1:33813712-33813731 None:intergenic 40.0%
!! AGTGAGTGTTTGCTATCAAG+TGG - chr5_1:33813871-33813890 Msa0728710:intron 40.0%
GCTTGAACAATCATTCTTCG+AGG - chr5_1:33812299-33812318 Msa0728710:CDS 40.0%
GATATTGCTCAGAAATTGCC+TGG - chr5_1:33812571-33812590 Msa0728710:CDS 40.0%
TCAGAAATTGCCTGGTAGAA+TGG - chr5_1:33812579-33812598 Msa0728710:CDS 40.0%
CAGAAATTGCCTGGTAGAAT+GGG - chr5_1:33812580-33812599 Msa0728710:CDS 40.0%
TGTACATTAGCTAGTGACCT+AGG - chr5_1:33812786-33812805 Msa0728710:intron 40.0%
! TGGTTTTCACTAACCTAGCA+TGG - chr5_1:33812871-33812890 Msa0728710:intron 40.0%
! TGTTGGTGGATCTAAAGTGA+GGG - chr5_1:33813092-33813111 Msa0728710:intron 40.0%
AGTGGCATTATCCTTACCTT+TGG - chr5_1:33813119-33813138 Msa0728710:intron 40.0%
GTGGCATTATCCTTACCTTT+GGG - chr5_1:33813120-33813139 Msa0728710:intron 40.0%
TATTTGCATGGCAAACCCAA+AGG + chr5_1:33813138-33813157 None:intergenic 40.0%
!! CTAAAAGTACCCTCTTGTTG+TGG - chr5_1:33813511-33813530 Msa0728710:intron 40.0%
TGCAATAAGCCACAACAAGA+GGG + chr5_1:33813523-33813542 None:intergenic 40.0%
TTGTTGTGGCTTATTGCAGA+AGG - chr5_1:33813525-33813544 Msa0728710:intron 40.0%
GCTTATTGCAGAAGGACATA+TGG - chr5_1:33813533-33813552 Msa0728710:intron 40.0%
ATGAAAGCTCATGGAGAGTT+GGG - chr5_1:33813580-33813599 Msa0728710:intron 40.0%
ATGGAGAGTTGGGAAACAAA+TGG - chr5_1:33813590-33813609 Msa0728710:intron 40.0%
TGGAGAGTTGGGAAACAAAT+GGG - chr5_1:33813591-33813610 Msa0728710:intron 40.0%
AAGATTGCCAAAAGGTTACC+TGG - chr5_1:33813616-33813635 Msa0728710:intron 40.0%
AGATTGCCAAAAGGTTACCT+GGG - chr5_1:33813617-33813636 Msa0728710:intron 40.0%
! ATTGAGTTTTCAGTTCTCCC+AGG + chr5_1:33813637-33813656 None:intergenic 40.0%
!! GTAGAAGAGTACTTCCACTA+GGG + chr5_1:33813711-33813730 None:intergenic 40.0%
!! TGTAGAAGAGTACTTCCACT+AGG + chr5_1:33813712-33813731 None:intergenic 40.0%
!! AGTGAGTGTTTGCTATCAAG+TGG - chr5_1:33813871-33813890 Msa0728710:intron 40.0%
CACTGTTTACCCATTCTACC+AGG + chr5_1:33812592-33812611 None:intergenic 45.0%
GTAAACAGTGTAGAGAGCGA+TGG - chr5_1:33812602-33812621 Msa0728710:CDS 45.0%
AAGGAGACATACACCATGCT+AGG + chr5_1:33812887-33812906 None:intergenic 45.0%
! GTGTTGGTGGATCTAAAGTG+AGG - chr5_1:33813091-33813110 Msa0728710:intron 45.0%
GCTCTCTTATCTCTCTCAAG+AGG + chr5_1:33813214-33813233 None:intergenic 45.0%
CTGCAATAAGCCACAACAAG+AGG + chr5_1:33813524-33813543 None:intergenic 45.0%
GATGAAAGCTCATGGAGAGT+TGG - chr5_1:33813579-33813598 Msa0728710:intron 45.0%
! AGTTCTCCCAGGTAACCTTT+TGG + chr5_1:33813626-33813645 None:intergenic 45.0%
GATACTGTGCTTTGGTTGGT+TGG + chr5_1:33813826-33813845 None:intergenic 45.0%
AGCTGATACTGTGCTTTGGT+TGG + chr5_1:33813830-33813849 None:intergenic 45.0%
ACTGAGCTGATACTGTGCTT+TGG + chr5_1:33813834-33813853 None:intergenic 45.0%
TAGCAAACACTCACTGTCAC+TGG + chr5_1:33813866-33813885 None:intergenic 45.0%
CACTGTTTACCCATTCTACC+AGG + chr5_1:33812592-33812611 None:intergenic 45.0%
GTAAACAGTGTAGAGAGCGA+TGG - chr5_1:33812602-33812621 Msa0728710:CDS 45.0%
AAGGAGACATACACCATGCT+AGG + chr5_1:33812887-33812906 None:intergenic 45.0%
! GTGTTGGTGGATCTAAAGTG+AGG - chr5_1:33813091-33813110 Msa0728710:intron 45.0%
GCTCTCTTATCTCTCTCAAG+AGG + chr5_1:33813214-33813233 None:intergenic 45.0%
CTGCAATAAGCCACAACAAG+AGG + chr5_1:33813524-33813543 None:intergenic 45.0%
GATGAAAGCTCATGGAGAGT+TGG - chr5_1:33813579-33813598 Msa0728710:intron 45.0%
! AGTTCTCCCAGGTAACCTTT+TGG + chr5_1:33813626-33813645 None:intergenic 45.0%
GATACTGTGCTTTGGTTGGT+TGG + chr5_1:33813826-33813845 None:intergenic 45.0%
AGCTGATACTGTGCTTTGGT+TGG + chr5_1:33813830-33813849 None:intergenic 45.0%
ACTGAGCTGATACTGTGCTT+TGG + chr5_1:33813834-33813853 None:intergenic 45.0%
TAGCAAACACTCACTGTCAC+TGG + chr5_1:33813866-33813885 None:intergenic 45.0%
GCATGGCAAACCCAAAGGTA+AGG + chr5_1:33813133-33813152 None:intergenic 50.0%
GCAGAAGGACATATGGAGTG+AGG - chr5_1:33813540-33813559 Msa0728710:intron 50.0%
GCATGGCAAACCCAAAGGTA+AGG + chr5_1:33813133-33813152 None:intergenic 50.0%
GCAGAAGGACATATGGAGTG+AGG - chr5_1:33813540-33813559 Msa0728710:intron 50.0%
TGGCAAACACTCGCTGTCAC+TGG + chr5_1:33813806-33813825 None:intergenic 55.0%
TGGCAAACACTCGCTGTCAC+TGG + chr5_1:33813806-33813825 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 33812245 33814059 33812245 ID=Msa0728710;Name=Msa0728710
chr5_1 mRNA 33812245 33814059 33812245 ID=Msa0728710-mRNA-1;Parent=Msa0728710;Name=Msa0728710-mRNA-1;_AED=0.10;_eAED=0.13;_QI=26|0|0|1|0.5|0.66|3|0|247
chr5_1 exon 33813882 33814059 33813882 ID=Msa0728710-mRNA-1:exon:10769;Parent=Msa0728710-mRNA-1
chr5_1 exon 33813653 33813779 33813653 ID=Msa0728710-mRNA-1:exon:10768;Parent=Msa0728710-mRNA-1
chr5_1 exon 33812245 33812706 33812245 ID=Msa0728710-mRNA-1:exon:10767;Parent=Msa0728710-mRNA-1
chr5_1 five_prime_UTR 33814034 33814059 33814034 ID=Msa0728710-mRNA-1:five_prime_utr;Parent=Msa0728710-mRNA-1
chr5_1 CDS 33813882 33814033 33813882 ID=Msa0728710-mRNA-1:cds;Parent=Msa0728710-mRNA-1
chr5_1 CDS 33813653 33813779 33813653 ID=Msa0728710-mRNA-1:cds;Parent=Msa0728710-mRNA-1
chr5_1 CDS 33812245 33812706 33812245 ID=Msa0728710-mRNA-1:cds;Parent=Msa0728710-mRNA-1
Gene Sequence

>Msa0728710

ATGGAAAATTTCAGATTTGGAGATCATTGCTTGAACAATCATTCTTCGAGGAATACTCAAGTCTCGTGCATATCTTATTGCAAAAGAGTGGGCATGACCAGAAACAATAAGTCCAACATTGTAAAAGGACAATGGACACTAGAAGAAGATAGGTTGTTGATAAATTTGGTTGAACAATATGGATTGAGAAAATGGACTGATATTGCTCAGAAATTGCCTGGTAGAATGGGTAAACAGTGTAGAGAGCGATGGATTAATCATCTAAGGCCAGATATTAAGTTGGGAAACAAATGGGTAAAGATTGCCAAAAGGTTACCTGGGAGAACTGAAAACTCAATTAAGAACCATTGGTATGCAACAAAGAGAAGAGAATATTCAAAAAGAAAGTACCCTAGTGGAAGTACTCTTCTACAAGAATATATCAAGAGCTTGAACTTAGACCAAAAAACCCCAAAAGAGTATACAAGAAAATCTTCAACTAAAGCCAGTGACAGCGAGTGTTTGCCAACCAACCAAAGCACAGTATCAGCTCAGTCTCAGAAAGCCAGTGACAGTGAGTGTTTGCTATCAAGTGGTGATTTTGATGATGATATCCTAGATATTTGTTTCGATGATAATTTGTTTCAAGATGGGTGTAGTATTGATTCTCTGTTAGATGATATGCAAATTGTTGAAGATACTATGCTTGGAGTTGATGTTAAGAAAGAGCTGGATTTGATCGAGTTTTTTTACTCAGGTCAA
Protein sequence

>Msa0728710

MENFRFGDHCLNNHSSRNTQVSCISYCKRVGMTRNNKSNIVKGQWTLEEDRLLINLVEQYGLRKWTDIAQKLPGRMGKQCRERWINHLRPDIKLGNKWVKIAKRLPGRTENSIKNHWYATKRREYSKRKYPSGSTLLQEYIKSLNLDQKTPKEYTRKSSTKASDSECLPTNQSTVSAQSQKASDSECLLSSGDFDDDILDICFDDNLFQDGCSIDSLLDDMQIVEDTMLGVDVKKELDLIEFFYSGQ