Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729050 | XP_003616452.1 | 95.855 | 193 | 6 | 2 | 1 | 192 | 1 | 192 | 1.59e-131 | 377 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729050 | sp|Q9LHS8|LBD33_ARATH | 52.406 | 187 | 73 | 3 | 1 | 187 | 1 | 171 | 1.43e-58 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729050 | G7KGT3 | 95.855 | 193 | 6 | 2 | 1 | 192 | 1 | 192 | 7.58e-132 | 377 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0729050 | TF | LOB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729050 | MtrunA17_Chr5g0435641 | 95.855 | 193 | 6 | 2 | 1 | 192 | 1 | 192 | 1.46e-135 | 377 |
| Msa0729050 | MtrunA17_Chr7g0261031 | 55.405 | 148 | 61 | 2 | 1 | 147 | 2 | 145 | 1.95e-52 | 167 |
| Msa0729050 | MtrunA17_Chr1g0184271 | 68.627 | 102 | 32 | 0 | 8 | 109 | 13 | 114 | 7.27e-49 | 159 |
| Msa0729050 | MtrunA17_Chr7g0260971 | 65.000 | 100 | 35 | 0 | 2 | 101 | 9 | 108 | 3.74e-46 | 151 |
| Msa0729050 | MtrunA17_Chr1g0184281 | 49.655 | 145 | 59 | 2 | 5 | 149 | 13 | 143 | 3.46e-44 | 145 |
| Msa0729050 | MtrunA17_Chr8g0351721 | 59.434 | 106 | 43 | 0 | 5 | 110 | 16 | 121 | 6.90e-44 | 145 |
| Msa0729050 | MtrunA17_Chr8g0351701 | 62.264 | 106 | 40 | 0 | 8 | 113 | 24 | 129 | 6.93e-44 | 145 |
| Msa0729050 | MtrunA17_Chr6g0460951 | 42.932 | 191 | 79 | 5 | 6 | 170 | 39 | 225 | 8.08e-44 | 145 |
| Msa0729050 | MtrunA17_Chr7g0245871 | 63.636 | 99 | 36 | 0 | 8 | 106 | 28 | 126 | 4.91e-41 | 139 |
| Msa0729050 | MtrunA17_Chr7g0245861 | 64.130 | 92 | 31 | 2 | 5 | 94 | 10 | 101 | 1.50e-38 | 129 |
| Msa0729050 | MtrunA17_Chr7g0227511 | 55.670 | 97 | 42 | 1 | 6 | 102 | 10 | 105 | 3.86e-34 | 119 |
| Msa0729050 | MtrunA17_Chr3g0114061 | 54.082 | 98 | 44 | 1 | 6 | 103 | 7 | 103 | 2.09e-33 | 117 |
| Msa0729050 | MtrunA17_Chr2g0311601 | 54.545 | 99 | 44 | 1 | 3 | 101 | 9 | 106 | 5.65e-33 | 115 |
| Msa0729050 | MtrunA17_Chr4g0058651 | 39.412 | 170 | 87 | 4 | 4 | 171 | 8 | 163 | 7.88e-33 | 116 |
| Msa0729050 | MtrunA17_Chr5g0437571 | 46.825 | 126 | 61 | 2 | 3 | 123 | 2 | 126 | 1.93e-32 | 114 |
| Msa0729050 | MtrunA17_Chr6g0449641 | 52.577 | 97 | 45 | 1 | 6 | 102 | 8 | 103 | 3.68e-32 | 113 |
| Msa0729050 | MtrunA17_Chr3g0106101 | 47.934 | 121 | 56 | 3 | 3 | 117 | 2 | 121 | 3.70e-32 | 114 |
| Msa0729050 | MtrunA17_Chr3g0117121 | 51.485 | 101 | 48 | 1 | 2 | 102 | 5 | 104 | 4.31e-32 | 114 |
| Msa0729050 | MtrunA17_Chr4g0043421 | 50.495 | 101 | 49 | 1 | 3 | 103 | 11 | 110 | 9.60e-32 | 113 |
| Msa0729050 | MtrunA17_Chr6g0460941 | 54.255 | 94 | 43 | 0 | 1 | 94 | 1 | 94 | 1.70e-30 | 107 |
| Msa0729050 | MtrunA17_Chr5g0437401 | 44.340 | 106 | 58 | 1 | 5 | 110 | 9 | 113 | 2.19e-30 | 109 |
| Msa0729050 | MtrunA17_Chr5g0402611 | 52.577 | 97 | 45 | 1 | 6 | 102 | 7 | 102 | 2.24e-30 | 113 |
| Msa0729050 | MtrunA17_Chr3g0129071 | 51.515 | 99 | 47 | 1 | 6 | 104 | 46 | 143 | 2.85e-30 | 111 |
| Msa0729050 | MtrunA17_Chr5g0438091 | 50.505 | 99 | 48 | 1 | 6 | 104 | 38 | 135 | 2.97e-30 | 110 |
| Msa0729050 | MtrunA17_Chr6g0449651 | 51.546 | 97 | 46 | 1 | 6 | 102 | 66 | 161 | 4.19e-30 | 109 |
| Msa0729050 | MtrunA17_Chr3g0113891 | 47.959 | 98 | 50 | 1 | 6 | 103 | 13 | 109 | 5.44e-30 | 108 |
| Msa0729050 | MtrunA17_Chr3g0115431 | 46.667 | 105 | 55 | 1 | 5 | 109 | 7 | 110 | 8.45e-30 | 109 |
| Msa0729050 | MtrunA17_Chr3g0097221 | 45.872 | 109 | 58 | 1 | 1 | 109 | 1 | 108 | 1.22e-29 | 110 |
| Msa0729050 | MtrunA17_Chr4g0030001 | 46.903 | 113 | 51 | 3 | 6 | 117 | 23 | 127 | 7.90e-28 | 103 |
| Msa0729050 | MtrunA17_Chr5g0432451 | 53.659 | 82 | 37 | 1 | 6 | 87 | 42 | 122 | 1.67e-25 | 98.6 |
| Msa0729050 | MtrunA17_Chr1g0200201 | 46.809 | 94 | 49 | 1 | 8 | 101 | 73 | 165 | 3.02e-25 | 97.8 |
| Msa0729050 | MtrunA17_Chr8g0353981 | 50.575 | 87 | 42 | 1 | 1 | 87 | 1 | 86 | 7.92e-25 | 96.7 |
| Msa0729050 | MtrunA17_Chr7g0225111 | 42.308 | 104 | 59 | 1 | 6 | 109 | 4 | 106 | 5.96e-24 | 91.3 |
| Msa0729050 | MtrunA17_Chr5g0444351 | 42.157 | 102 | 58 | 1 | 8 | 109 | 6 | 106 | 1.07e-23 | 91.7 |
| Msa0729050 | MtrunA17_Chr4g0059901 | 38.384 | 99 | 60 | 1 | 3 | 101 | 6 | 103 | 9.15e-20 | 84.0 |
| Msa0729050 | MtrunA17_Chr8g0342351 | 34.351 | 131 | 75 | 3 | 7 | 129 | 12 | 139 | 1.65e-19 | 83.6 |
| Msa0729050 | MtrunA17_Chr6g0452691 | 35.922 | 103 | 64 | 2 | 8 | 109 | 10 | 111 | 1.59e-17 | 76.6 |
| Msa0729050 | MtrunA17_Chr8g0374591 | 37.864 | 103 | 63 | 1 | 8 | 110 | 9 | 110 | 3.35e-17 | 74.3 |
| Msa0729050 | MtrunA17_Chr8g0374601 | 37.255 | 102 | 63 | 1 | 8 | 109 | 27 | 127 | 3.56e-17 | 77.4 |
| Msa0729050 | MtrunA17_Chr4g0040831 | 33.333 | 102 | 67 | 1 | 3 | 104 | 11 | 111 | 7.09e-17 | 75.1 |
| Msa0729050 | MtrunA17_Chr6g0452671 | 39.506 | 81 | 48 | 1 | 7 | 87 | 11 | 90 | 3.79e-16 | 73.2 |
| Msa0729050 | MtrunA17_Chr2g0330201 | 31.683 | 101 | 68 | 1 | 3 | 103 | 15 | 114 | 5.65e-16 | 74.3 |
| Msa0729050 | MtrunA17_Chr6g0452661 | 32.381 | 105 | 69 | 2 | 6 | 109 | 8 | 111 | 7.08e-16 | 73.6 |
| Msa0729050 | MtrunA17_Chr5g0439111 | 33.333 | 105 | 68 | 2 | 6 | 109 | 8 | 111 | 2.81e-14 | 68.9 |
| Msa0729050 | MtrunA17_Chr8g0374581 | 35.789 | 95 | 59 | 2 | 8 | 101 | 9 | 102 | 1.25e-13 | 67.0 |
| Msa0729050 | MtrunA17_Chr4g0055441 | 30.097 | 103 | 70 | 2 | 8 | 109 | 3 | 104 | 6.19e-13 | 63.5 |
| Msa0729050 | MtrunA17_Chr2g0326041 | 52.083 | 48 | 22 | 1 | 6 | 53 | 32 | 78 | 1.89e-12 | 60.5 |
| Msa0729050 | MtrunA17_Chr4g0046201 | 31.111 | 90 | 61 | 1 | 6 | 95 | 5 | 93 | 2.03e-12 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729050 | AT5G06080.1 | 52.406 | 187 | 73 | 3 | 1 | 187 | 1 | 171 | 1.45e-59 | 184 |
| Msa0729050 | AT3G58190.1 | 68.868 | 106 | 33 | 0 | 8 | 113 | 12 | 117 | 1.26e-50 | 163 |
| Msa0729050 | AT2G42440.1 | 60.656 | 122 | 43 | 1 | 1 | 117 | 1 | 122 | 1.30e-49 | 161 |
| Msa0729050 | AT2G42430.1 | 60.526 | 114 | 45 | 0 | 3 | 116 | 11 | 124 | 4.94e-47 | 154 |
| Msa0729050 | AT3G03760.1 | 61.607 | 112 | 43 | 0 | 6 | 117 | 50 | 161 | 7.16e-47 | 155 |
| Msa0729050 | AT4G00210.1 | 64.000 | 100 | 36 | 0 | 2 | 101 | 6 | 105 | 3.28e-46 | 152 |
| Msa0729050 | AT2G31310.1 | 48.344 | 151 | 77 | 1 | 1 | 150 | 1 | 151 | 3.66e-45 | 148 |
| Msa0729050 | AT2G45420.1 | 65.347 | 101 | 35 | 0 | 10 | 110 | 40 | 140 | 9.97e-44 | 147 |
| Msa0729050 | AT4G00220.1 | 61.386 | 101 | 39 | 0 | 10 | 110 | 20 | 120 | 1.67e-41 | 140 |
| Msa0729050 | AT2G45410.1 | 60.870 | 92 | 36 | 0 | 10 | 101 | 19 | 110 | 8.67e-39 | 132 |
| Msa0729050 | AT3G27650.1 | 54.639 | 97 | 43 | 1 | 6 | 102 | 38 | 133 | 1.24e-33 | 117 |
| Msa0729050 | AT5G63090.4 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0729050 | AT5G63090.3 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0729050 | AT5G63090.2 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0729050 | AT5G63090.1 | 48.276 | 116 | 59 | 1 | 4 | 119 | 8 | 122 | 4.12e-33 | 117 |
| Msa0729050 | AT2G30130.1 | 51.923 | 104 | 48 | 2 | 1 | 103 | 1 | 103 | 4.43e-32 | 115 |
| Msa0729050 | AT1G31320.1 | 53.261 | 92 | 42 | 1 | 3 | 94 | 9 | 99 | 8.54e-31 | 110 |
| Msa0729050 | AT2G28500.1 | 46.018 | 113 | 55 | 2 | 6 | 113 | 54 | 165 | 7.64e-30 | 110 |
| Msa0729050 | AT5G66870.1 | 50.000 | 102 | 50 | 1 | 1 | 102 | 1 | 101 | 1.32e-29 | 111 |
| Msa0729050 | AT1G07900.1 | 46.429 | 112 | 52 | 2 | 6 | 117 | 32 | 135 | 2.50e-29 | 107 |
| Msa0729050 | AT2G30340.2 | 51.515 | 99 | 47 | 1 | 6 | 104 | 52 | 149 | 3.56e-29 | 109 |
| Msa0729050 | AT2G30340.1 | 50.495 | 101 | 49 | 1 | 6 | 106 | 51 | 150 | 4.09e-29 | 109 |
| Msa0729050 | AT3G11090.1 | 40.496 | 121 | 70 | 2 | 6 | 125 | 10 | 129 | 4.62e-29 | 106 |
| Msa0729050 | AT3G26660.1 | 40.171 | 117 | 69 | 1 | 6 | 122 | 4 | 119 | 6.50e-29 | 104 |
| Msa0729050 | AT3G26620.1 | 45.833 | 96 | 51 | 1 | 6 | 101 | 4 | 98 | 1.84e-28 | 103 |
| Msa0729050 | AT1G16530.1 | 50.515 | 97 | 46 | 2 | 6 | 101 | 13 | 108 | 2.03e-27 | 102 |
| Msa0729050 | AT2G23660.2 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 8.98e-27 | 103 |
| Msa0729050 | AT2G23660.3 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 8.98e-27 | 103 |
| Msa0729050 | AT2G23660.1 | 47.917 | 96 | 49 | 1 | 6 | 101 | 4 | 98 | 8.98e-27 | 103 |
| Msa0729050 | AT1G65620.1 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0729050 | AT1G65620.4 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0729050 | AT1G65620.3 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0729050 | AT1G65620.5 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0729050 | AT1G65620.2 | 56.098 | 82 | 35 | 1 | 6 | 87 | 8 | 88 | 6.51e-26 | 99.4 |
| Msa0729050 | AT2G40470.2 | 51.220 | 82 | 39 | 1 | 6 | 87 | 19 | 99 | 5.60e-25 | 96.7 |
| Msa0729050 | AT2G40470.1 | 51.220 | 82 | 39 | 1 | 6 | 87 | 44 | 124 | 8.75e-25 | 97.1 |
| Msa0729050 | AT3G50510.1 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 4.50e-24 | 94.4 |
| Msa0729050 | AT3G50510.2 | 40.708 | 113 | 66 | 1 | 1 | 113 | 6 | 117 | 4.50e-24 | 94.4 |
| Msa0729050 | AT3G13850.1 | 36.893 | 103 | 64 | 1 | 7 | 109 | 36 | 137 | 7.76e-20 | 84.7 |
| Msa0729050 | AT3G47870.1 | 32.075 | 106 | 71 | 1 | 3 | 108 | 32 | 136 | 1.31e-17 | 79.7 |
| Msa0729050 | AT5G35900.1 | 35.294 | 119 | 70 | 4 | 6 | 123 | 4 | 116 | 1.83e-17 | 77.0 |
| Msa0729050 | AT1G06280.1 | 36.842 | 76 | 47 | 1 | 7 | 82 | 24 | 98 | 4.33e-16 | 73.6 |
| Msa0729050 | AT1G72980.1 | 31.683 | 101 | 68 | 1 | 3 | 103 | 9 | 108 | 1.47e-13 | 67.0 |
| Msa0729050 | AT4G22700.1 | 33.333 | 96 | 61 | 2 | 8 | 102 | 6 | 99 | 4.65e-12 | 62.4 |
Find 39 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAGCAGTGCATAAGGTTTA+TGG | 0.160867 | 5_1:-35506394 | Msa0729050:CDS |
| CGCATGCAAGATCCTATTTA+TGG | 0.202738 | 5_1:-35506283 | Msa0729050:CDS |
| ATGATCCAAAACTTTGATTA+TGG | 0.255926 | 5_1:+35505453 | None:intergenic |
| AATTACCATAATCAAAGTTT+TGG | 0.265734 | 5_1:-35505458 | Msa0729050:CDS |
| CAAGAGGAGATAGATATTCT+TGG | 0.321470 | 5_1:-35505566 | Msa0729050:CDS |
| CTTTGGAAAATGACAGGGTT+TGG | 0.324866 | 5_1:-35506514 | None:intergenic |
| GGATTTCCAGAGCCTTTATA+TGG | 0.325475 | 5_1:-35505398 | Msa0729050:CDS |
| TCTGGAAATCCTTGTGCATT+AGG | 0.337625 | 5_1:+35505410 | None:intergenic |
| ACATTAGAGAAGTTCTTATC+AGG | 0.342216 | 5_1:-35505359 | Msa0729050:CDS |
| TGAGCAACACAACCATAAAT+AGG | 0.353770 | 5_1:+35506271 | None:intergenic |
| GCACCAATGAACTCAAATAA+TGG | 0.356387 | 5_1:-35505488 | Msa0729050:CDS |
| CACCCTTGGTTCAAGCATAA+TGG | 0.370662 | 5_1:-35505311 | Msa0729050:CDS |
| GTTCCATTATTTGAGTTCAT+TGG | 0.371818 | 5_1:+35505485 | None:intergenic |
| GCCTGTTCATAGGAGAAGTA+TGG | 0.380890 | 5_1:+35506430 | None:intergenic |
| GAGTTGGAATCACCATATAA+AGG | 0.394155 | 5_1:+35505386 | None:intergenic |
| TCCATACTTCTCCTATGAAC+AGG | 0.425422 | 5_1:-35506431 | Msa0729050:CDS |
| CTTCTCTAATGTATTTGAGT+TGG | 0.427053 | 5_1:+35505370 | None:intergenic |
| CACTATATCTTATGAAGCCT+TGG | 0.435812 | 5_1:-35506308 | Msa0729050:CDS |
| ATGAGCTGAAGCCTGTTCAT+AGG | 0.437523 | 5_1:+35506420 | None:intergenic |
| GAATCACCATATAAAGGCTC+TGG | 0.448083 | 5_1:+35505392 | None:intergenic |
| ATAAAACTTTGGAAAATGAC+AGG | 0.453003 | 5_1:-35506520 | None:intergenic |
| CACTAGCACACTTTCTCCTT+AGG | 0.465254 | 5_1:+35506467 | None:intergenic |
| AGGGCTTCTTGAACCACCCT+TGG | 0.469455 | 5_1:-35505325 | Msa0729050:CDS |
| TATCTATGCATTGCAACATC+AGG | 0.488764 | 5_1:-35506248 | Msa0729050:intron |
| GTGGAGCATGCAAGTTCCTA+AGG | 0.513337 | 5_1:-35506483 | Msa0729050:CDS |
| CTCCATTATGCTTGAACCAA+GGG | 0.523653 | 5_1:+35505309 | None:intergenic |
| AGGATCTTGCATGCGAGCCA+AGG | 0.545581 | 5_1:+35506291 | None:intergenic |
| AGATATTCTTGGAAGTGTAA+TGG | 0.550072 | 5_1:-35505555 | Msa0729050:CDS |
| TCTCCATTATGCTTGAACCA+AGG | 0.563541 | 5_1:+35505308 | None:intergenic |
| TAATGGAGACATGAAGAACT+AGG | 0.571172 | 5_1:-35505294 | None:intergenic |
| ACAGGGTTTGGCTCATCATG+TGG | 0.589293 | 5_1:-35506502 | Msa0729050:CDS |
| GCAGGTTGCTAGCTTGCAAG+AGG | 0.599304 | 5_1:-35505582 | Msa0729050:intron |
| CATTATGCTTGAACCAAGGG+TGG | 0.607660 | 5_1:+35505312 | None:intergenic |
| AGTGTTAGTGTTGTGAATTG+TGG | 0.611640 | 5_1:-35505524 | Msa0729050:CDS |
| CTTATCAGGAATTGATCAAG+AGG | 0.617949 | 5_1:-35505345 | Msa0729050:CDS |
| TAAAACTTTGGAAAATGACA+GGG | 0.628064 | 5_1:-35506519 | None:intergenic |
| TTATCAGGAATTGATCAAGA+GGG | 0.643489 | 5_1:-35505344 | Msa0729050:CDS |
| GGCTTCATAAGATATAGTGA+TGG | 0.646623 | 5_1:+35506312 | None:intergenic |
| GAGCTAATTCCTAATGCACA+AGG | 0.651993 | 5_1:-35505419 | Msa0729050:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAATAGTTTCATAAAATTA+CGG | + | chr5_1:35505864-35505883 | None:intergenic | 10.0% |
| !! | TTAATAGTTTCATAAAATTA+CGG | + | chr5_1:35505864-35505883 | None:intergenic | 10.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | - | chr5_1:35505888-35505907 | Msa0729050:intron | 20.0% |
| !!! | AATTACCATAATCAAAGTTT+TGG | - | chr5_1:35506342-35506361 | Msa0729050:CDS | 20.0% |
| !!! | ATTTTTTGTCAAAATCATGA+TGG | - | chr5_1:35505888-35505907 | Msa0729050:intron | 20.0% |
| !!! | AATTACCATAATCAAAGTTT+TGG | - | chr5_1:35506342-35506361 | Msa0729050:CDS | 20.0% |
| !!! | ACAACCATTGTTTTAAATTG+TGG | + | chr5_1:35505747-35505766 | None:intergenic | 25.0% |
| ! | TTTAAATTGTCGAACAATCA+TGG | - | chr5_1:35505785-35505804 | Msa0729050:intron | 25.0% |
| ! | ATAGTTTCATAAAATTACGG+TGG | + | chr5_1:35505861-35505880 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | + | chr5_1:35505945-35505964 | None:intergenic | 25.0% |
| !!! | GCTTGTTATAAATAAGAAGT+TGG | - | chr5_1:35506072-35506091 | Msa0729050:intron | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | + | chr5_1:35506350-35506369 | None:intergenic | 25.0% |
| !!! | ACAACCATTGTTTTAAATTG+TGG | + | chr5_1:35505747-35505766 | None:intergenic | 25.0% |
| ! | TTTAAATTGTCGAACAATCA+TGG | - | chr5_1:35505785-35505804 | Msa0729050:intron | 25.0% |
| ! | ATAGTTTCATAAAATTACGG+TGG | + | chr5_1:35505861-35505880 | None:intergenic | 25.0% |
| ! | ATGCATCAATATATAAGCAA+TGG | + | chr5_1:35505945-35505964 | None:intergenic | 25.0% |
| !!! | GCTTGTTATAAATAAGAAGT+TGG | - | chr5_1:35506072-35506091 | Msa0729050:intron | 25.0% |
| ! | ATGATCCAAAACTTTGATTA+TGG | + | chr5_1:35506350-35506369 | None:intergenic | 25.0% |
| !! | GCATCACTTCTATTTTGAAT+AGG | + | chr5_1:35505466-35505485 | None:intergenic | 30.0% |
| CTTTATATTGCACCAAAATG+CGG | - | chr5_1:35505636-35505655 | Msa0729050:intron | 30.0% | |
| ATTTAAAAACCTTGGTTGTG+AGG | + | chr5_1:35505772-35505791 | None:intergenic | 30.0% | |
| GTTCGACAATTTAAAAACCT+TGG | + | chr5_1:35505780-35505799 | None:intergenic | 30.0% | |
| AATGGATGCTAGAAATATAG+CGG | + | chr5_1:35505927-35505946 | None:intergenic | 30.0% | |
| ATTCAATGCATGTGTAAGTA+AGG | + | chr5_1:35506030-35506049 | None:intergenic | 30.0% | |
| CTCTCCACAAAAAATTTCTT+AGG | - | chr5_1:35506107-35506126 | Msa0729050:intron | 30.0% | |
| !!! | TAGGCCTAAGAAATTTTTTG+TGG | + | chr5_1:35506114-35506133 | None:intergenic | 30.0% |
| ! | GGCCTAAAAAATTTTCTACA+CGG | - | chr5_1:35506128-35506147 | Msa0729050:intron | 30.0% |
| TTTCTTATGTGTGATTATGC+AGG | - | chr5_1:35506200-35506219 | Msa0729050:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | - | chr5_1:35506245-35506264 | Msa0729050:intron | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | + | chr5_1:35506318-35506337 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | - | chr5_1:35506353-35506372 | Msa0729050:CDS | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | - | chr5_1:35506359-35506378 | Msa0729050:CDS | 30.0% |
| CTTCTCTAATGTATTTGAGT+TGG | + | chr5_1:35506433-35506452 | None:intergenic | 30.0% | |
| ACATTAGAGAAGTTCTTATC+AGG | - | chr5_1:35506441-35506460 | Msa0729050:CDS | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | - | chr5_1:35506456-35506475 | Msa0729050:CDS | 30.0% | |
| !! | GCATCACTTCTATTTTGAAT+AGG | + | chr5_1:35505466-35505485 | None:intergenic | 30.0% |
| CTTTATATTGCACCAAAATG+CGG | - | chr5_1:35505636-35505655 | Msa0729050:intron | 30.0% | |
| ATTTAAAAACCTTGGTTGTG+AGG | + | chr5_1:35505772-35505791 | None:intergenic | 30.0% | |
| GTTCGACAATTTAAAAACCT+TGG | + | chr5_1:35505780-35505799 | None:intergenic | 30.0% | |
| AATGGATGCTAGAAATATAG+CGG | + | chr5_1:35505927-35505946 | None:intergenic | 30.0% | |
| ATTCAATGCATGTGTAAGTA+AGG | + | chr5_1:35506030-35506049 | None:intergenic | 30.0% | |
| CTCTCCACAAAAAATTTCTT+AGG | - | chr5_1:35506107-35506126 | Msa0729050:intron | 30.0% | |
| !!! | TAGGCCTAAGAAATTTTTTG+TGG | + | chr5_1:35506114-35506133 | None:intergenic | 30.0% |
| ! | GGCCTAAAAAATTTTCTACA+CGG | - | chr5_1:35506128-35506147 | Msa0729050:intron | 30.0% |
| TTTCTTATGTGTGATTATGC+AGG | - | chr5_1:35506200-35506219 | Msa0729050:intron | 30.0% | |
| ! | AGATATTCTTGGAAGTGTAA+TGG | - | chr5_1:35506245-35506264 | Msa0729050:intron | 30.0% |
| ! | GTTCCATTATTTGAGTTCAT+TGG | + | chr5_1:35506318-35506337 | None:intergenic | 30.0% |
| !!! | TCAAAGTTTTGGATCATACT+TGG | - | chr5_1:35506353-35506372 | Msa0729050:CDS | 30.0% |
| ! | TTTTGGATCATACTTGGATA+TGG | - | chr5_1:35506359-35506378 | Msa0729050:CDS | 30.0% |
| CTTCTCTAATGTATTTGAGT+TGG | + | chr5_1:35506433-35506452 | None:intergenic | 30.0% | |
| ACATTAGAGAAGTTCTTATC+AGG | - | chr5_1:35506441-35506460 | Msa0729050:CDS | 30.0% | |
| TTATCAGGAATTGATCAAGA+GGG | - | chr5_1:35506456-35506475 | Msa0729050:CDS | 30.0% | |
| !! | TCATTTTTCAGCAGTGCATA+AGG | - | chr5_1:35505399-35505418 | Msa0729050:CDS | 35.0% |
| GGCTTCATAAGATATAGTGA+TGG | + | chr5_1:35505491-35505510 | None:intergenic | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | - | chr5_1:35505492-35505511 | Msa0729050:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | + | chr5_1:35505532-35505551 | None:intergenic | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | - | chr5_1:35505552-35505571 | Msa0729050:CDS | 35.0% | |
| CACCAAAATGCGGTAAAATA+TGG | - | chr5_1:35505646-35505665 | Msa0729050:intron | 35.0% | |
| ! | CGGACCACAATTTAAAACAA+TGG | - | chr5_1:35505740-35505759 | Msa0729050:intron | 35.0% |
| TCGAACAATCATGGATATTG+TGG | - | chr5_1:35505794-35505813 | Msa0729050:intron | 35.0% | |
| ATATGCAGATAATGTGACCT+TGG | - | chr5_1:35505819-35505838 | Msa0729050:intron | 35.0% | |
| AATGCATGTGTAAGTAAGGA+TGG | + | chr5_1:35506026-35506045 | None:intergenic | 35.0% | |
| !!! | GGCCGTGTAGAAAATTTTTT+AGG | + | chr5_1:35506133-35506152 | None:intergenic | 35.0% |
| CATGACCTACACATAATTGT+GGG | - | chr5_1:35506152-35506171 | Msa0729050:intron | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | - | chr5_1:35506153-35506172 | Msa0729050:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | - | chr5_1:35506234-35506253 | Msa0729050:intron | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | - | chr5_1:35506276-35506295 | Msa0729050:CDS | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | - | chr5_1:35506312-35506331 | Msa0729050:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | + | chr5_1:35506417-35506436 | None:intergenic | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | - | chr5_1:35506455-35506474 | Msa0729050:CDS | 35.0% | |
| !! | TCATTTTTCAGCAGTGCATA+AGG | - | chr5_1:35505399-35505418 | Msa0729050:CDS | 35.0% |
| GGCTTCATAAGATATAGTGA+TGG | + | chr5_1:35505491-35505510 | None:intergenic | 35.0% | |
| CACTATATCTTATGAAGCCT+TGG | - | chr5_1:35505492-35505511 | Msa0729050:CDS | 35.0% | |
| TGAGCAACACAACCATAAAT+AGG | + | chr5_1:35505532-35505551 | None:intergenic | 35.0% | |
| TATCTATGCATTGCAACATC+AGG | - | chr5_1:35505552-35505571 | Msa0729050:CDS | 35.0% | |
| CACCAAAATGCGGTAAAATA+TGG | - | chr5_1:35505646-35505665 | Msa0729050:intron | 35.0% | |
| ! | CGGACCACAATTTAAAACAA+TGG | - | chr5_1:35505740-35505759 | Msa0729050:intron | 35.0% |
| TCGAACAATCATGGATATTG+TGG | - | chr5_1:35505794-35505813 | Msa0729050:intron | 35.0% | |
| ATATGCAGATAATGTGACCT+TGG | - | chr5_1:35505819-35505838 | Msa0729050:intron | 35.0% | |
| AATGCATGTGTAAGTAAGGA+TGG | + | chr5_1:35506026-35506045 | None:intergenic | 35.0% | |
| !!! | GGCCGTGTAGAAAATTTTTT+AGG | + | chr5_1:35506133-35506152 | None:intergenic | 35.0% |
| CATGACCTACACATAATTGT+GGG | - | chr5_1:35506152-35506171 | Msa0729050:intron | 35.0% | |
| ATGACCTACACATAATTGTG+GGG | - | chr5_1:35506153-35506172 | Msa0729050:intron | 35.0% | |
| CAAGAGGAGATAGATATTCT+TGG | - | chr5_1:35506234-35506253 | Msa0729050:intron | 35.0% | |
| AGTGTTAGTGTTGTGAATTG+TGG | - | chr5_1:35506276-35506295 | Msa0729050:CDS | 35.0% | |
| GCACCAATGAACTCAAATAA+TGG | - | chr5_1:35506312-35506331 | Msa0729050:CDS | 35.0% | |
| GAGTTGGAATCACCATATAA+AGG | + | chr5_1:35506417-35506436 | None:intergenic | 35.0% | |
| CTTATCAGGAATTGATCAAG+AGG | - | chr5_1:35506455-35506474 | Msa0729050:CDS | 35.0% | |
| TCCATACTTCTCCTATGAAC+AGG | - | chr5_1:35505369-35505388 | Msa0729050:CDS | 40.0% | |
| TCAGCAGTGCATAAGGTTTA+TGG | - | chr5_1:35505406-35505425 | Msa0729050:CDS | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | - | chr5_1:35505517-35505536 | Msa0729050:CDS | 40.0% | |
| ! | CGCCATATTTTACCGCATTT+TGG | + | chr5_1:35505651-35505670 | None:intergenic | 40.0% |
| TTGCGATTGTAATGTCGTTG+TGG | - | chr5_1:35505684-35505703 | Msa0729050:intron | 40.0% | |
| ! | ATGTGACCTTGGTGCATATT+TGG | - | chr5_1:35505830-35505849 | Msa0729050:intron | 40.0% |
| GATCCAGAAAGTTGGAGTAA+TGG | + | chr5_1:35506004-35506023 | None:intergenic | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | + | chr5_1:35506012-35506031 | None:intergenic | 40.0% | |
| CCACAATTATGTGTAGGTCA+TGG | + | chr5_1:35506154-35506173 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | - | chr5_1:35506151-35506170 | Msa0729050:intron | 40.0% | |
| TGACCTACACATAATTGTGG+GGG | - | chr5_1:35506154-35506173 | Msa0729050:intron | 40.0% | |
| ! | ACATAATTGTGGGGGTGTAA+TGG | - | chr5_1:35506162-35506181 | Msa0729050:intron | 40.0% |
| GAGCTAATTCCTAATGCACA+AGG | - | chr5_1:35506381-35506400 | Msa0729050:CDS | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | + | chr5_1:35506393-35506412 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | - | chr5_1:35506402-35506421 | Msa0729050:CDS | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | + | chr5_1:35506411-35506430 | None:intergenic | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | + | chr5_1:35506494-35506513 | None:intergenic | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | + | chr5_1:35506495-35506514 | None:intergenic | 40.0% | |
| TCCATACTTCTCCTATGAAC+AGG | - | chr5_1:35505369-35505388 | Msa0729050:CDS | 40.0% | |
| TCAGCAGTGCATAAGGTTTA+TGG | - | chr5_1:35505406-35505425 | Msa0729050:CDS | 40.0% | |
| CGCATGCAAGATCCTATTTA+TGG | - | chr5_1:35505517-35505536 | Msa0729050:CDS | 40.0% | |
| ! | CGCCATATTTTACCGCATTT+TGG | + | chr5_1:35505651-35505670 | None:intergenic | 40.0% |
| TTGCGATTGTAATGTCGTTG+TGG | - | chr5_1:35505684-35505703 | Msa0729050:intron | 40.0% | |
| ! | ATGTGACCTTGGTGCATATT+TGG | - | chr5_1:35505830-35505849 | Msa0729050:intron | 40.0% |
| GATCCAGAAAGTTGGAGTAA+TGG | + | chr5_1:35506004-35506023 | None:intergenic | 40.0% | |
| TAAGGATGGATCCAGAAAGT+TGG | + | chr5_1:35506012-35506031 | None:intergenic | 40.0% | |
| CCACAATTATGTGTAGGTCA+TGG | + | chr5_1:35506154-35506173 | None:intergenic | 40.0% | |
| CCATGACCTACACATAATTG+TGG | - | chr5_1:35506151-35506170 | Msa0729050:intron | 40.0% | |
| TGACCTACACATAATTGTGG+GGG | - | chr5_1:35506154-35506173 | Msa0729050:intron | 40.0% | |
| ! | ACATAATTGTGGGGGTGTAA+TGG | - | chr5_1:35506162-35506181 | Msa0729050:intron | 40.0% |
| GAGCTAATTCCTAATGCACA+AGG | - | chr5_1:35506381-35506400 | Msa0729050:CDS | 40.0% | |
| TCTGGAAATCCTTGTGCATT+AGG | + | chr5_1:35506393-35506412 | None:intergenic | 40.0% | |
| GGATTTCCAGAGCCTTTATA+TGG | - | chr5_1:35506402-35506421 | Msa0729050:CDS | 40.0% | |
| GAATCACCATATAAAGGCTC+TGG | + | chr5_1:35506411-35506430 | None:intergenic | 40.0% | |
| CTCCATTATGCTTGAACCAA+GGG | + | chr5_1:35506494-35506513 | None:intergenic | 40.0% | |
| TCTCCATTATGCTTGAACCA+AGG | + | chr5_1:35506495-35506514 | None:intergenic | 40.0% | |
| CACTAGCACACTTTCTCCTT+AGG | + | chr5_1:35505336-35505355 | None:intergenic | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | + | chr5_1:35505373-35505392 | None:intergenic | 45.0% | |
| ATGAGCTGAAGCCTGTTCAT+AGG | + | chr5_1:35505383-35505402 | None:intergenic | 45.0% | |
| GCTCATCCAAATATGCACCA+AGG | + | chr5_1:35505839-35505858 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | + | chr5_1:35506001-35506020 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | - | chr5_1:35505998-35506017 | Msa0729050:intron | 45.0% | |
| ACACCCCCACAATTATGTGT+AGG | + | chr5_1:35506160-35506179 | None:intergenic | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | + | chr5_1:35506491-35506510 | None:intergenic | 45.0% | |
| CACCCTTGGTTCAAGCATAA+TGG | - | chr5_1:35506489-35506508 | Msa0729050:CDS | 45.0% | |
| CACTAGCACACTTTCTCCTT+AGG | + | chr5_1:35505336-35505355 | None:intergenic | 45.0% | |
| GCCTGTTCATAGGAGAAGTA+TGG | + | chr5_1:35505373-35505392 | None:intergenic | 45.0% | |
| ATGAGCTGAAGCCTGTTCAT+AGG | + | chr5_1:35505383-35505402 | None:intergenic | 45.0% | |
| GCTCATCCAAATATGCACCA+AGG | + | chr5_1:35505839-35505858 | None:intergenic | 45.0% | |
| CCAGAAAGTTGGAGTAATGG+AGG | + | chr5_1:35506001-35506020 | None:intergenic | 45.0% | |
| CCTCCATTACTCCAACTTTC+TGG | - | chr5_1:35505998-35506017 | Msa0729050:intron | 45.0% | |
| ACACCCCCACAATTATGTGT+AGG | + | chr5_1:35506160-35506179 | None:intergenic | 45.0% | |
| CATTATGCTTGAACCAAGGG+TGG | + | chr5_1:35506491-35506510 | None:intergenic | 45.0% | |
| CACCCTTGGTTCAAGCATAA+TGG | - | chr5_1:35506489-35506508 | Msa0729050:CDS | 45.0% | |
| ! | ACAGGGTTTGGCTCATCATG+TGG | - | chr5_1:35505298-35505317 | Msa0729050:CDS | 50.0% |
| GTGGAGCATGCAAGTTCCTA+AGG | - | chr5_1:35505317-35505336 | Msa0729050:CDS | 50.0% | |
| GCGGTAAAATATGGCGCATG+CGG | - | chr5_1:35505655-35505674 | Msa0729050:intron | 50.0% | |
| TGTTGCCACAGTTGCAGTTG+CGG | - | chr5_1:35505720-35505739 | Msa0729050:intron | 50.0% | |
| TGGTTGTGACCTCACAACCA+AGG | - | chr5_1:35505760-35505779 | Msa0729050:intron | 50.0% | |
| ! | ACAGGGTTTGGCTCATCATG+TGG | - | chr5_1:35505298-35505317 | Msa0729050:CDS | 50.0% |
| GTGGAGCATGCAAGTTCCTA+AGG | - | chr5_1:35505317-35505336 | Msa0729050:CDS | 50.0% | |
| GCGGTAAAATATGGCGCATG+CGG | - | chr5_1:35505655-35505674 | Msa0729050:intron | 50.0% | |
| TGTTGCCACAGTTGCAGTTG+CGG | - | chr5_1:35505720-35505739 | Msa0729050:intron | 50.0% | |
| TGGTTGTGACCTCACAACCA+AGG | - | chr5_1:35505760-35505779 | Msa0729050:intron | 50.0% | |
| AGGATCTTGCATGCGAGCCA+AGG | + | chr5_1:35505512-35505531 | None:intergenic | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | - | chr5_1:35506218-35506237 | Msa0729050:intron | 55.0% |
| AGGGCTTCTTGAACCACCCT+TGG | - | chr5_1:35506475-35506494 | Msa0729050:CDS | 55.0% | |
| AGGATCTTGCATGCGAGCCA+AGG | + | chr5_1:35505512-35505531 | None:intergenic | 55.0% | |
| ! | GCAGGTTGCTAGCTTGCAAG+AGG | - | chr5_1:35506218-35506237 | Msa0729050:intron | 55.0% |
| AGGGCTTCTTGAACCACCCT+TGG | - | chr5_1:35506475-35506494 | Msa0729050:CDS | 55.0% | |
| GTGGTCCGCAACTGCAACTG+TGG | + | chr5_1:35505728-35505747 | None:intergenic | 60.0% | |
| GTGGTCCGCAACTGCAACTG+TGG | + | chr5_1:35505728-35505747 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 35505295 | 35506527 | 35505295 | ID=Msa0729050;Name=Msa0729050 |
| chr5_1 | mRNA | 35505295 | 35506527 | 35505295 | ID=Msa0729050-mRNA-1;Parent=Msa0729050;Name=Msa0729050-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|194 |
| chr5_1 | exon | 35506249 | 35506527 | 35506249 | ID=Msa0729050-mRNA-1:exon:11004;Parent=Msa0729050-mRNA-1 |
| chr5_1 | exon | 35505295 | 35505600 | 35505295 | ID=Msa0729050-mRNA-1:exon:11003;Parent=Msa0729050-mRNA-1 |
| chr5_1 | CDS | 35506249 | 35506527 | 35506249 | ID=Msa0729050-mRNA-1:cds;Parent=Msa0729050-mRNA-1 |
| chr5_1 | CDS | 35505295 | 35505600 | 35505295 | ID=Msa0729050-mRNA-1:cds;Parent=Msa0729050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
