AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0729530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729530 MtrunA17_Chr5g0422571 94.389 303 9 1 1 303 1 295 0.0 598
Msa0729530 MtrunA17_Chr1g0198651 69.758 248 63 3 20 265 23 260 2.74e-117 339
Msa0729530 MtrunA17_Chr2g0328921 61.328 256 81 6 26 270 50 298 7.35e-107 313
Msa0729530 MtrunA17_Chr1g0173841 61.538 247 60 4 67 284 144 384 5.06e-106 314
Msa0729530 MtrunA17_Chr7g0258011 62.821 234 60 3 72 284 118 345 9.79e-104 306
Msa0729530 MtrunA17_Chr8g0352011 62.174 230 64 5 72 284 112 335 1.07e-102 304
Msa0729530 MtrunA17_Chr2g0321291 61.739 230 69 5 58 270 67 294 7.80e-101 298
Msa0729530 MtrunA17_Chr4g0026521 63.470 219 64 4 74 279 76 291 1.68e-98 291
Msa0729530 MtrunA17_Chr4g0053341 64.390 205 63 3 64 265 32 229 6.51e-95 280
Msa0729530 MtrunA17_Chr1g0200421 37.500 168 93 6 104 260 226 392 7.72e-25 103
Msa0729530 MtrunA17_Chr8g0382121 40.278 144 80 5 124 263 127 268 1.22e-23 98.6
Msa0729530 MtrunA17_Chr4g0029521 32.673 202 125 6 58 257 2 194 1.81e-23 100
Msa0729530 MtrunA17_Chr1g0181381 33.163 196 113 5 73 259 10 196 1.89e-23 100
Msa0729530 MtrunA17_Chr2g0320341 38.065 155 88 5 112 260 235 387 1.92e-22 96.3
Msa0729530 MtrunA17_Chr4g0040571 31.771 192 120 4 81 271 27 208 2.44e-22 96.7
Msa0729530 MtrunA17_Chr1g0151351 35.057 174 101 6 85 256 33 196 6.06e-22 95.5
Msa0729530 MtrunA17_Chr8g0373541 33.005 203 112 7 89 277 26 218 1.42e-21 94.7
Msa0729530 MtrunA17_Chr1g0199101 36.306 157 87 6 109 263 63 208 1.62e-21 94.4
Msa0729530 MtrunA17_Chr1g0185121 30.841 214 135 6 62 272 8 211 1.74e-21 94.0
Msa0729530 MtrunA17_Chr7g0263941 33.889 180 106 6 82 259 23 191 1.77e-21 93.6
Msa0729530 MtrunA17_Chr8g0342421 34.868 152 86 5 116 265 85 225 2.51e-21 94.0
Msa0729530 MtrunA17_Chr7g0268961 37.500 144 77 6 116 257 45 177 3.44e-21 93.6
Msa0729530 MtrunA17_Chr2g0330171 35.443 158 88 6 104 259 58 203 6.32e-21 92.4
Msa0729530 MtrunA17_Chr2g0326381 38.571 140 76 4 116 254 55 185 8.78e-21 91.7
Msa0729530 MtrunA17_Chr1g0210821 35.374 147 84 4 114 259 65 201 1.30e-20 92.0
Msa0729530 MtrunA17_Chr1g0191991 35.443 158 83 6 110 259 74 220 2.49e-20 90.9
Msa0729530 MtrunA17_Chr1g0162971 37.671 146 78 5 116 259 64 198 2.95e-20 90.5
Msa0729530 MtrunA17_Chr1g0163001 34.694 147 85 4 114 259 64 200 7.76e-20 89.7
Msa0729530 MtrunA17_Chr3g0141431 33.721 172 102 6 88 257 17 178 2.82e-19 87.4
Msa0729530 MtrunA17_Chr3g0123941 39.583 144 78 7 124 263 139 277 3.56e-19 86.3
Msa0729530 MtrunA17_Chr2g0324991 36.806 144 78 7 109 249 8 141 1.45e-17 78.2
Msa0729530 MtrunA17_Chr6g0479921 30.612 147 89 6 114 257 50 186 2.73e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0729530 AT1G13290.1 68.462 260 57 6 20 274 12 251 2.78e-119 345
Msa0729530 AT3G57670.1 78.443 167 35 1 104 270 199 364 4.84e-101 301
Msa0729530 AT1G51220.1 50.318 314 113 9 7 288 34 336 2.11e-100 298
Msa0729530 AT3G20880.1 81.169 154 28 1 107 260 241 393 3.39e-97 293
Msa0729530 AT1G08290.1 70.056 177 45 1 106 282 164 332 6.53e-96 286
Msa0729530 AT1G34790.1 63.333 210 64 3 72 269 83 291 1.12e-91 275
Msa0729530 AT1G34370.3 38.235 170 91 6 104 260 9 177 4.79e-27 107
Msa0729530 AT1G34370.2 40.397 151 83 5 116 260 238 387 1.24e-26 109
Msa0729530 AT1G34370.1 40.397 151 83 5 116 260 238 387 1.24e-26 109
Msa0729530 AT5G22890.1 39.785 186 94 11 87 260 181 360 9.36e-25 102
Msa0729530 AT5G66730.1 32.673 202 121 6 67 264 4 194 7.49e-23 98.6
Msa0729530 AT1G55110.3 37.013 154 85 5 114 265 84 227 4.86e-22 95.9
Msa0729530 AT1G55110.1 37.013 154 85 5 114 265 84 227 4.86e-22 95.9
Msa0729530 AT1G55110.2 37.013 154 85 5 114 265 84 227 4.86e-22 95.9
Msa0729530 AT3G50700.1 33.005 203 121 6 67 265 6 197 5.11e-22 95.9
Msa0729530 AT5G03150.1 37.063 143 80 4 116 257 76 209 1.55e-21 94.7
Msa0729530 AT2G02080.1 37.013 154 84 5 114 265 75 217 1.73e-21 94.7
Msa0729530 AT2G02080.4 37.013 154 84 5 114 265 75 217 1.73e-21 94.7
Msa0729530 AT2G02080.5 37.013 154 84 5 114 265 75 217 1.73e-21 94.7
Msa0729530 AT2G02080.3 37.013 154 84 5 114 265 75 217 1.73e-21 94.7
Msa0729530 AT5G44160.1 33.523 176 106 4 90 264 34 199 1.89e-21 94.4
Msa0729530 AT2G02070.2 38.514 148 78 5 114 259 73 209 2.14e-21 94.7
Msa0729530 AT2G02070.1 38.514 148 78 5 114 259 73 209 2.14e-21 94.7
Msa0729530 AT1G03840.1 33.523 176 106 5 90 264 38 203 2.60e-21 94.4
Msa0729530 AT1G03840.2 34.091 176 103 7 90 264 38 201 4.93e-21 93.6
Msa0729530 AT5G44160.2 36.000 150 85 4 116 264 21 160 5.69e-21 92.8
Msa0729530 AT2G02080.6 37.086 151 82 5 117 265 1 140 8.16e-21 92.4
Msa0729530 AT2G02080.2 37.086 151 82 5 117 265 1 140 8.16e-21 92.4
Msa0729530 AT1G14580.1 36.986 146 79 5 114 257 74 208 3.24e-20 90.9
Msa0729530 AT1G14580.2 36.986 146 79 5 114 257 74 208 3.24e-20 90.9
Msa0729530 AT1G14580.3 36.986 146 79 5 114 257 88 222 3.59e-20 90.9
Msa0729530 AT3G45260.2 36.552 145 82 4 116 259 62 197 5.14e-20 90.1
Msa0729530 AT3G45260.1 36.552 145 82 4 116 259 62 197 5.14e-20 90.1
Msa0729530 AT5G60470.2 34.118 170 102 5 88 256 39 199 5.25e-20 90.1
Msa0729530 AT5G60470.3 34.118 170 102 5 88 256 35 195 6.94e-20 89.7
Msa0729530 AT5G60470.1 37.241 145 81 5 116 259 58 193 7.25e-20 89.7
Msa0729530 AT3G13810.2 34.615 156 92 4 109 263 87 233 9.51e-20 89.7
Msa0729530 AT3G13810.4 35.099 151 88 4 114 263 91 232 1.01e-19 89.7
Msa0729530 AT3G13810.1 35.099 151 88 4 114 263 91 232 1.01e-19 89.7
Msa0729530 AT3G13810.5 35.099 151 88 4 114 263 86 227 1.05e-19 89.7
Msa0729530 AT3G13810.3 34.615 156 92 4 109 263 73 219 1.10e-19 89.4
Msa0729530 AT3G13810.6 35.099 151 88 4 114 263 72 213 1.23e-19 89.4
Msa0729530 AT4G02670.2 34.211 152 90 4 109 259 71 213 8.21e-19 86.3
Msa0729530 AT4G02670.1 34.211 152 90 4 109 259 69 211 8.43e-19 86.3
Msa0729530 AT1G25250.1 30.216 139 88 4 114 250 31 162 1.44e-11 64.7
Msa0729530 AT1G25250.3 30.216 139 88 4 114 250 54 185 1.72e-11 64.7

Find 61 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTACTCCCCTTAGAGATTC+TGG 0.179929 5_1:-37029054 None:intergenic
CTCCAATTCAAGGTCAATAT+TGG 0.256476 5_1:+37028293 Msa0729530:CDS
AAAGATCATGTTCGTGCTTT+CGG 0.314009 5_1:+37029342 Msa0729530:CDS
GAAAAGGACCAGAATCTCTA+AGG 0.322420 5_1:+37029046 Msa0729530:CDS
ATCCAATATTGACCTTGAAT+TGG 0.345108 5_1:-37028295 None:intergenic
TGATGATCAGGTTTGCTAAT+AGG 0.347021 5_1:-37028259 None:intergenic
TCACTCTCACTTGGCCCTCC+TGG 0.348650 5_1:+37028064 Msa0729530:CDS
TTTAATGTGGAGGATAGTTT+AGG 0.370427 5_1:-37028100 None:intergenic
TAGCAAACCTGATCATCATT+TGG 0.373747 5_1:+37028264 Msa0729530:CDS
AGCATGGAGCAAAGCCATTC+GGG 0.401651 5_1:+37029202 Msa0729530:CDS
GGGAAACCATTTGCAGTTAG+AGG 0.410419 5_1:+37029237 Msa0729530:CDS
GAAGATCAGGAAGTATTGTT+AGG 0.411354 5_1:+37029399 Msa0729530:CDS
TTGGCTTCAGCTCCAATTCA+AGG 0.439186 5_1:+37028283 Msa0729530:CDS
CATGTTCGTGCTTTCGGTGA+TGG 0.445219 5_1:+37029348 Msa0729530:CDS
GTCATTATTAGTTTCAATTG+AGG 0.447268 5_1:-37028020 None:intergenic
AAGCATGGAGCAAAGCCATT+CGG 0.449148 5_1:+37029201 Msa0729530:CDS
AGTTTCAATTGAGGATATGT+AGG 0.450025 5_1:-37028011 None:intergenic
CCTTGCTATTGCTGTGCAGA+GGG 0.458350 5_1:+37029102 Msa0729530:CDS
ACCACTTTGCTCATCATCAA+TGG 0.458380 5_1:-37028182 None:intergenic
CGTCGAGAGTTGTGAAGATC+AGG 0.460359 5_1:+37029386 Msa0729530:CDS
TCACCTGCTCAAATCCTCAT+TGG 0.461696 5_1:+37028322 Msa0729530:CDS
CAACCGTTTCAATAATATGC+AGG 0.466033 5_1:+37028384 Msa0729530:CDS
CAGTCACCTCTAACTGCAAA+TGG 0.466119 5_1:-37029243 None:intergenic
AGTAGAAGAGTGATTTAATG+TGG 0.470478 5_1:-37028113 None:intergenic
TCTTCCATTTCACTCTCACT+TGG 0.472544 5_1:+37028055 Msa0729530:CDS
GCTGAAGCCAAATGATGATC+AGG 0.472827 5_1:-37028271 None:intergenic
TAACCTGCATATTATTGAAA+CGG 0.475929 5_1:-37028387 None:intergenic
AGTCTTAACATTGATGAAGC+TGG 0.481814 5_1:-37029078 None:intergenic
TCCTTGAGTGGTCTTGACCT+TGG 0.482145 5_1:-37029147 None:intergenic
AGGGCCAAGTGAGAGTGAAA+TGG 0.483147 5_1:-37028059 None:intergenic
GTATATATCAGATGCATATG+TGG 0.492007 5_1:+37029004 Msa0729530:intron
TCCTTGCTATTGCTGTGCAG+AGG 0.502744 5_1:+37029101 Msa0729530:CDS
TATATATCAGATGCATATGT+GGG 0.512415 5_1:+37029005 Msa0729530:intron
CAGATGCATATGTGGGGACA+TGG 0.520986 5_1:+37029012 Msa0729530:intron
CATGGATCACAATACAGAAA+AGG 0.532079 5_1:+37029030 Msa0729530:CDS
TCCAAGGTCAAGACCACTCA+AGG 0.543238 5_1:+37029146 Msa0729530:CDS
CACTTCAAACACACTACAAG+AGG 0.550716 5_1:+37029178 Msa0729530:CDS
TCACAACTCTCGACGGTGTG+TGG 0.553384 5_1:-37029378 None:intergenic
GAATATGATGAAGAATTTGA+AGG 0.555602 5_1:+37029426 Msa0729530:CDS
AAAAGGACCAGAATCTCTAA+GGG 0.555739 5_1:+37029047 Msa0729530:CDS
CATTTGCAGTTAGAGGTGAC+TGG 0.568578 5_1:+37029244 Msa0729530:CDS
GGAGAATGTGTGAGCTTGCA+TGG 0.580463 5_1:-37027990 None:intergenic
CCCTCTGCACAGCAATAGCA+AGG 0.585163 5_1:-37029102 None:intergenic
TAATGATAACATCGATCGAA+TGG 0.586962 5_1:+37029476 Msa0729530:CDS
ATGAGGATTTGAGCAGGTGA+AGG 0.587509 5_1:-37028319 None:intergenic
ACACACTACAAGAGGAAGCA+TGG 0.591744 5_1:+37029186 Msa0729530:CDS
AGAACAACATAGAGCATCCA+AGG 0.593445 5_1:+37029130 Msa0729530:CDS
CCACACTTTCTACACCCGAA+TGG 0.593700 5_1:-37029216 None:intergenic
CCATTCGGGTGTAGAAAGTG+TGG 0.603595 5_1:+37029216 Msa0729530:CDS
CTGATCTTCACAACTCTCGA+CGG 0.614391 5_1:-37029385 None:intergenic
ACAGTGCAAGAGAACTGTGT+TGG 0.625514 5_1:-37028346 None:intergenic
AGAAGAGTGATTTAATGTGG+AGG 0.629008 5_1:-37028110 None:intergenic
GGTCCAATGAGGATTTGAGC+AGG 0.629341 5_1:-37028325 None:intergenic
AGTGTTCTGAAATCCTTGAG+TGG 0.638667 5_1:-37029159 None:intergenic
AGAACTGTGTTGGTCCAATG+AGG 0.645090 5_1:-37028336 None:intergenic
GTAACAGTTGCACTTCACAT+TGG 0.647512 5_1:+37028205 Msa0729530:CDS
CATTCGGGTGTAGAAAGTGT+GGG 0.658306 5_1:+37029217 Msa0729530:CDS
CTTGCTATTGCTGTGCAGAG+GGG 0.663614 5_1:+37029103 Msa0729530:CDS
ACCATTGATGATGAGCAAAG+TGG 0.669448 5_1:+37028181 Msa0729530:CDS
ATATATCAGATGCATATGTG+GGG 0.720271 5_1:+37029006 Msa0729530:intron
AAAGGACCAGAATCTCTAAG+GGG 0.721082 5_1:+37029048 Msa0729530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTATAAACAAATATTAG+TGG + chr5_1:37028681-37028700 Msa0729530:intron 10.0%
!!! TTTTTATAAACAAATATTAG+TGG + chr5_1:37028681-37028700 Msa0729530:intron 10.0%
!! AAAAAAAAAAAGTTTACTTG+AGG - chr5_1:37028541-37028560 None:intergenic 15.0%
!! AAAAAAAAAAAGTTTACTTG+AGG - chr5_1:37028541-37028560 None:intergenic 15.0%
!!! ATTGTTCATTTTTATCTTCT+AGG - chr5_1:37028842-37028861 None:intergenic 20.0%
!!! ATTGTTCATTTTTATCTTCT+AGG - chr5_1:37028842-37028861 None:intergenic 20.0%
!! GTCATTATTAGTTTCAATTG+AGG - chr5_1:37028023-37028042 None:intergenic 25.0%
! TAACCTGCATATTATTGAAA+CGG - chr5_1:37028390-37028409 None:intergenic 25.0%
!! AAATGACAAAATTTTGTGCT+TGG - chr5_1:37028937-37028956 None:intergenic 25.0%
! TATATATCAGATGCATATGT+GGG + chr5_1:37029005-37029024 Msa0729530:intron 25.0%
! GAATATGATGAAGAATTTGA+AGG + chr5_1:37029426-37029445 Msa0729530:CDS 25.0%
!! GTCATTATTAGTTTCAATTG+AGG - chr5_1:37028023-37028042 None:intergenic 25.0%
! TAACCTGCATATTATTGAAA+CGG - chr5_1:37028390-37028409 None:intergenic 25.0%
!! AAATGACAAAATTTTGTGCT+TGG - chr5_1:37028937-37028956 None:intergenic 25.0%
! TATATATCAGATGCATATGT+GGG + chr5_1:37029005-37029024 Msa0729530:intron 25.0%
! GAATATGATGAAGAATTTGA+AGG + chr5_1:37029426-37029445 Msa0729530:CDS 25.0%
AGTTTCAATTGAGGATATGT+AGG - chr5_1:37028014-37028033 None:intergenic 30.0%
TTTAATGTGGAGGATAGTTT+AGG - chr5_1:37028103-37028122 None:intergenic 30.0%
AGTAGAAGAGTGATTTAATG+TGG - chr5_1:37028116-37028135 None:intergenic 30.0%
!! TGGTAAAGTTTTGCTTTTGA+AGG - chr5_1:37028165-37028184 None:intergenic 30.0%
! GTGTTTTGTGAAATGTTTGT+TGG - chr5_1:37028235-37028254 None:intergenic 30.0%
ATCCAATATTGACCTTGAAT+TGG - chr5_1:37028298-37028317 None:intergenic 30.0%
AACGATTCAAGATGGTATTA+AGG - chr5_1:37028650-37028669 None:intergenic 30.0%
! AAAGTGTTAACGATTCAAGA+TGG - chr5_1:37028658-37028677 None:intergenic 30.0%
!! CTAGTTCTTGACAACTTTTA+TGG - chr5_1:37028722-37028741 None:intergenic 30.0%
!!! AGGAGTATTGACAAATTTTC+TGG - chr5_1:37028759-37028778 None:intergenic 30.0%
ATGTCCTAATGCATACTATA+TGG + chr5_1:37028782-37028801 Msa0729530:intron 30.0%
TCTTCCATATAGTATGCATT+AGG - chr5_1:37028789-37028808 None:intergenic 30.0%
GTATATATCAGATGCATATG+TGG + chr5_1:37029004-37029023 Msa0729530:intron 30.0%
ATATATCAGATGCATATGTG+GGG + chr5_1:37029006-37029025 Msa0729530:intron 30.0%
AGAACACATGAGAAAAATTG+TGG + chr5_1:37029267-37029286 Msa0729530:CDS 30.0%
AGAAAAATTGTGGAAAGCTT+TGG + chr5_1:37029277-37029296 Msa0729530:CDS 30.0%
TAATGATAACATCGATCGAA+TGG + chr5_1:37029476-37029495 Msa0729530:CDS 30.0%
AGTTTCAATTGAGGATATGT+AGG - chr5_1:37028014-37028033 None:intergenic 30.0%
TTTAATGTGGAGGATAGTTT+AGG - chr5_1:37028103-37028122 None:intergenic 30.0%
AGTAGAAGAGTGATTTAATG+TGG - chr5_1:37028116-37028135 None:intergenic 30.0%
!! TGGTAAAGTTTTGCTTTTGA+AGG - chr5_1:37028165-37028184 None:intergenic 30.0%
! GTGTTTTGTGAAATGTTTGT+TGG - chr5_1:37028235-37028254 None:intergenic 30.0%
ATCCAATATTGACCTTGAAT+TGG - chr5_1:37028298-37028317 None:intergenic 30.0%
AACGATTCAAGATGGTATTA+AGG - chr5_1:37028650-37028669 None:intergenic 30.0%
! AAAGTGTTAACGATTCAAGA+TGG - chr5_1:37028658-37028677 None:intergenic 30.0%
!! CTAGTTCTTGACAACTTTTA+TGG - chr5_1:37028722-37028741 None:intergenic 30.0%
!!! AGGAGTATTGACAAATTTTC+TGG - chr5_1:37028759-37028778 None:intergenic 30.0%
ATGTCCTAATGCATACTATA+TGG + chr5_1:37028782-37028801 Msa0729530:intron 30.0%
TCTTCCATATAGTATGCATT+AGG - chr5_1:37028789-37028808 None:intergenic 30.0%
GTATATATCAGATGCATATG+TGG + chr5_1:37029004-37029023 Msa0729530:intron 30.0%
ATATATCAGATGCATATGTG+GGG + chr5_1:37029006-37029025 Msa0729530:intron 30.0%
AGAACACATGAGAAAAATTG+TGG + chr5_1:37029267-37029286 Msa0729530:CDS 30.0%
AGAAAAATTGTGGAAAGCTT+TGG + chr5_1:37029277-37029296 Msa0729530:CDS 30.0%
TAATGATAACATCGATCGAA+TGG + chr5_1:37029476-37029495 Msa0729530:CDS 30.0%
!! TGGAGGATAGTTTAGGTTTT+TGG - chr5_1:37028096-37028115 None:intergenic 35.0%
AGAAGAGTGATTTAATGTGG+AGG - chr5_1:37028113-37028132 None:intergenic 35.0%
!! TGATGATCAGGTTTGCTAAT+AGG - chr5_1:37028262-37028281 None:intergenic 35.0%
TAGCAAACCTGATCATCATT+TGG + chr5_1:37028264-37028283 Msa0729530:CDS 35.0%
CTCCAATTCAAGGTCAATAT+TGG + chr5_1:37028293-37028312 Msa0729530:CDS 35.0%
CAACCGTTTCAATAATATGC+AGG + chr5_1:37028384-37028403 Msa0729530:CDS 35.0%
TGTATCTTGAACTACTAGCT+AGG - chr5_1:37028467-37028486 None:intergenic 35.0%
AGTATGCATTAGGACATTGA+AGG - chr5_1:37028779-37028798 None:intergenic 35.0%
CATGGATCACAATACAGAAA+AGG + chr5_1:37029030-37029049 Msa0729530:CDS 35.0%
AAAAGGACCAGAATCTCTAA+GGG + chr5_1:37029047-37029066 Msa0729530:CDS 35.0%
AGTCTTAACATTGATGAAGC+TGG - chr5_1:37029081-37029100 None:intergenic 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + chr5_1:37029291-37029310 Msa0729530:CDS 35.0%
AAAGATCATGTTCGTGCTTT+CGG + chr5_1:37029342-37029361 Msa0729530:CDS 35.0%
!! GAAGATCAGGAAGTATTGTT+AGG + chr5_1:37029399-37029418 Msa0729530:CDS 35.0%
! AACATCGATCGAATGGTTTT+CGG + chr5_1:37029483-37029502 Msa0729530:CDS 35.0%
!! TGGAGGATAGTTTAGGTTTT+TGG - chr5_1:37028096-37028115 None:intergenic 35.0%
AGAAGAGTGATTTAATGTGG+AGG - chr5_1:37028113-37028132 None:intergenic 35.0%
!! TGATGATCAGGTTTGCTAAT+AGG - chr5_1:37028262-37028281 None:intergenic 35.0%
TAGCAAACCTGATCATCATT+TGG + chr5_1:37028264-37028283 Msa0729530:CDS 35.0%
CTCCAATTCAAGGTCAATAT+TGG + chr5_1:37028293-37028312 Msa0729530:CDS 35.0%
CAACCGTTTCAATAATATGC+AGG + chr5_1:37028384-37028403 Msa0729530:CDS 35.0%
TGTATCTTGAACTACTAGCT+AGG - chr5_1:37028467-37028486 None:intergenic 35.0%
AGTATGCATTAGGACATTGA+AGG - chr5_1:37028779-37028798 None:intergenic 35.0%
CATGGATCACAATACAGAAA+AGG + chr5_1:37029030-37029049 Msa0729530:CDS 35.0%
AAAAGGACCAGAATCTCTAA+GGG + chr5_1:37029047-37029066 Msa0729530:CDS 35.0%
AGTCTTAACATTGATGAAGC+TGG - chr5_1:37029081-37029100 None:intergenic 35.0%
!!! AAGCTTTGGTTTTGTATCTG+TGG + chr5_1:37029291-37029310 Msa0729530:CDS 35.0%
AAAGATCATGTTCGTGCTTT+CGG + chr5_1:37029342-37029361 Msa0729530:CDS 35.0%
!! GAAGATCAGGAAGTATTGTT+AGG + chr5_1:37029399-37029418 Msa0729530:CDS 35.0%
! AACATCGATCGAATGGTTTT+CGG + chr5_1:37029483-37029502 Msa0729530:CDS 35.0%
TCTTCCATTTCACTCTCACT+TGG + chr5_1:37028055-37028074 Msa0729530:CDS 40.0%
!!! TTAGGTTTTTGGTGTGTTCC+AGG - chr5_1:37028085-37028104 None:intergenic 40.0%
!! ACCATTGATGATGAGCAAAG+TGG + chr5_1:37028181-37028200 Msa0729530:CDS 40.0%
ACCACTTTGCTCATCATCAA+TGG - chr5_1:37028185-37028204 None:intergenic 40.0%
GTAACAGTTGCACTTCACAT+TGG + chr5_1:37028205-37028224 Msa0729530:CDS 40.0%
AGCTAGGCAATAGACAGTTT+AGG - chr5_1:37028451-37028470 None:intergenic 40.0%
GAAAAGGACCAGAATCTCTA+AGG + chr5_1:37029046-37029065 Msa0729530:CDS 40.0%
AAAGGACCAGAATCTCTAAG+GGG + chr5_1:37029048-37029067 Msa0729530:CDS 40.0%
TTTACTCCCCTTAGAGATTC+TGG - chr5_1:37029057-37029076 None:intergenic 40.0%
! AGAACAACATAGAGCATCCA+AGG + chr5_1:37029130-37029149 Msa0729530:CDS 40.0%
!! AGTGTTCTGAAATCCTTGAG+TGG - chr5_1:37029162-37029181 None:intergenic 40.0%
CACTTCAAACACACTACAAG+AGG + chr5_1:37029178-37029197 Msa0729530:CDS 40.0%
TCTTCCATTTCACTCTCACT+TGG + chr5_1:37028055-37028074 Msa0729530:CDS 40.0%
!!! TTAGGTTTTTGGTGTGTTCC+AGG - chr5_1:37028085-37028104 None:intergenic 40.0%
!! ACCATTGATGATGAGCAAAG+TGG + chr5_1:37028181-37028200 Msa0729530:CDS 40.0%
ACCACTTTGCTCATCATCAA+TGG - chr5_1:37028185-37028204 None:intergenic 40.0%
GTAACAGTTGCACTTCACAT+TGG + chr5_1:37028205-37028224 Msa0729530:CDS 40.0%
AGCTAGGCAATAGACAGTTT+AGG - chr5_1:37028451-37028470 None:intergenic 40.0%
GAAAAGGACCAGAATCTCTA+AGG + chr5_1:37029046-37029065 Msa0729530:CDS 40.0%
AAAGGACCAGAATCTCTAAG+GGG + chr5_1:37029048-37029067 Msa0729530:CDS 40.0%
TTTACTCCCCTTAGAGATTC+TGG - chr5_1:37029057-37029076 None:intergenic 40.0%
! AGAACAACATAGAGCATCCA+AGG + chr5_1:37029130-37029149 Msa0729530:CDS 40.0%
!! AGTGTTCTGAAATCCTTGAG+TGG - chr5_1:37029162-37029181 None:intergenic 40.0%
CACTTCAAACACACTACAAG+AGG + chr5_1:37029178-37029197 Msa0729530:CDS 40.0%
!!! GTTTTTGGTGTGTTCCAGGA+GGG - chr5_1:37028081-37028100 None:intergenic 45.0%
GCTGAAGCCAAATGATGATC+AGG - chr5_1:37028274-37028293 None:intergenic 45.0%
TTGGCTTCAGCTCCAATTCA+AGG + chr5_1:37028283-37028302 Msa0729530:CDS 45.0%
ATGAGGATTTGAGCAGGTGA+AGG - chr5_1:37028322-37028341 None:intergenic 45.0%
TCACCTGCTCAAATCCTCAT+TGG + chr5_1:37028322-37028341 Msa0729530:CDS 45.0%
! AGAACTGTGTTGGTCCAATG+AGG - chr5_1:37028339-37028358 None:intergenic 45.0%
ACAGTGCAAGAGAACTGTGT+TGG - chr5_1:37028349-37028368 None:intergenic 45.0%
ACACACTACAAGAGGAAGCA+TGG + chr5_1:37029186-37029205 Msa0729530:CDS 45.0%
AAGCATGGAGCAAAGCCATT+CGG + chr5_1:37029201-37029220 Msa0729530:CDS 45.0%
! CATTCGGGTGTAGAAAGTGT+GGG + chr5_1:37029217-37029236 Msa0729530:CDS 45.0%
GGGAAACCATTTGCAGTTAG+AGG + chr5_1:37029237-37029256 Msa0729530:CDS 45.0%
CAGTCACCTCTAACTGCAAA+TGG - chr5_1:37029246-37029265 None:intergenic 45.0%
CATTTGCAGTTAGAGGTGAC+TGG + chr5_1:37029244-37029263 Msa0729530:CDS 45.0%
CTGATCTTCACAACTCTCGA+CGG - chr5_1:37029388-37029407 None:intergenic 45.0%
!!! GTTTTTGGTGTGTTCCAGGA+GGG - chr5_1:37028081-37028100 None:intergenic 45.0%
GCTGAAGCCAAATGATGATC+AGG - chr5_1:37028274-37028293 None:intergenic 45.0%
TTGGCTTCAGCTCCAATTCA+AGG + chr5_1:37028283-37028302 Msa0729530:CDS 45.0%
ATGAGGATTTGAGCAGGTGA+AGG - chr5_1:37028322-37028341 None:intergenic 45.0%
TCACCTGCTCAAATCCTCAT+TGG + chr5_1:37028322-37028341 Msa0729530:CDS 45.0%
! AGAACTGTGTTGGTCCAATG+AGG - chr5_1:37028339-37028358 None:intergenic 45.0%
ACAGTGCAAGAGAACTGTGT+TGG - chr5_1:37028349-37028368 None:intergenic 45.0%
ACACACTACAAGAGGAAGCA+TGG + chr5_1:37029186-37029205 Msa0729530:CDS 45.0%
AAGCATGGAGCAAAGCCATT+CGG + chr5_1:37029201-37029220 Msa0729530:CDS 45.0%
! CATTCGGGTGTAGAAAGTGT+GGG + chr5_1:37029217-37029236 Msa0729530:CDS 45.0%
GGGAAACCATTTGCAGTTAG+AGG + chr5_1:37029237-37029256 Msa0729530:CDS 45.0%
CAGTCACCTCTAACTGCAAA+TGG - chr5_1:37029246-37029265 None:intergenic 45.0%
CATTTGCAGTTAGAGGTGAC+TGG + chr5_1:37029244-37029263 Msa0729530:CDS 45.0%
CTGATCTTCACAACTCTCGA+CGG - chr5_1:37029388-37029407 None:intergenic 45.0%
!!! TTGTATTTAATTTAAAAAAA+AGG + chr5_1:37028904-37028923 Msa0729530:intron 5.0%
!!! TTGTATTTAATTTAAAAAAA+AGG + chr5_1:37028904-37028923 Msa0729530:intron 5.0%
AGGGCCAAGTGAGAGTGAAA+TGG - chr5_1:37028062-37028081 None:intergenic 50.0%
!!! GGTTTTTGGTGTGTTCCAGG+AGG - chr5_1:37028082-37028101 None:intergenic 50.0%
GGTCCAATGAGGATTTGAGC+AGG - chr5_1:37028328-37028347 None:intergenic 50.0%
CAGATGCATATGTGGGGACA+TGG + chr5_1:37029012-37029031 Msa0729530:intron 50.0%
!! TCCTTGCTATTGCTGTGCAG+AGG + chr5_1:37029101-37029120 Msa0729530:CDS 50.0%
!! CCTTGCTATTGCTGTGCAGA+GGG + chr5_1:37029102-37029121 Msa0729530:CDS 50.0%
!! CTTGCTATTGCTGTGCAGAG+GGG + chr5_1:37029103-37029122 Msa0729530:CDS 50.0%
TCCAAGGTCAAGACCACTCA+AGG + chr5_1:37029146-37029165 Msa0729530:CDS 50.0%
! TCCTTGAGTGGTCTTGACCT+TGG - chr5_1:37029150-37029169 None:intergenic 50.0%
AGCATGGAGCAAAGCCATTC+GGG + chr5_1:37029202-37029221 Msa0729530:CDS 50.0%
CCACACTTTCTACACCCGAA+TGG - chr5_1:37029219-37029238 None:intergenic 50.0%
CCATTCGGGTGTAGAAAGTG+TGG + chr5_1:37029216-37029235 Msa0729530:CDS 50.0%
CATGTTCGTGCTTTCGGTGA+TGG + chr5_1:37029348-37029367 Msa0729530:CDS 50.0%
CGTCGAGAGTTGTGAAGATC+AGG + chr5_1:37029386-37029405 Msa0729530:CDS 50.0%
AGGGCCAAGTGAGAGTGAAA+TGG - chr5_1:37028062-37028081 None:intergenic 50.0%
!!! GGTTTTTGGTGTGTTCCAGG+AGG - chr5_1:37028082-37028101 None:intergenic 50.0%
GGTCCAATGAGGATTTGAGC+AGG - chr5_1:37028328-37028347 None:intergenic 50.0%
CAGATGCATATGTGGGGACA+TGG + chr5_1:37029012-37029031 Msa0729530:intron 50.0%
!! TCCTTGCTATTGCTGTGCAG+AGG + chr5_1:37029101-37029120 Msa0729530:CDS 50.0%
!! CCTTGCTATTGCTGTGCAGA+GGG + chr5_1:37029102-37029121 Msa0729530:CDS 50.0%
!! CTTGCTATTGCTGTGCAGAG+GGG + chr5_1:37029103-37029122 Msa0729530:CDS 50.0%
TCCAAGGTCAAGACCACTCA+AGG + chr5_1:37029146-37029165 Msa0729530:CDS 50.0%
! TCCTTGAGTGGTCTTGACCT+TGG - chr5_1:37029150-37029169 None:intergenic 50.0%
AGCATGGAGCAAAGCCATTC+GGG + chr5_1:37029202-37029221 Msa0729530:CDS 50.0%
CCACACTTTCTACACCCGAA+TGG - chr5_1:37029219-37029238 None:intergenic 50.0%
CCATTCGGGTGTAGAAAGTG+TGG + chr5_1:37029216-37029235 Msa0729530:CDS 50.0%
CATGTTCGTGCTTTCGGTGA+TGG + chr5_1:37029348-37029367 Msa0729530:CDS 50.0%
CGTCGAGAGTTGTGAAGATC+AGG + chr5_1:37029386-37029405 Msa0729530:CDS 50.0%
CCCTCTGCACAGCAATAGCA+AGG - chr5_1:37029105-37029124 None:intergenic 55.0%
TCACAACTCTCGACGGTGTG+TGG - chr5_1:37029381-37029400 None:intergenic 55.0%
CCCTCTGCACAGCAATAGCA+AGG - chr5_1:37029105-37029124 None:intergenic 55.0%
TCACAACTCTCGACGGTGTG+TGG - chr5_1:37029381-37029400 None:intergenic 55.0%
TCACTCTCACTTGGCCCTCC+TGG + chr5_1:37028064-37028083 Msa0729530:CDS 60.0%
TCACTCTCACTTGGCCCTCC+TGG + chr5_1:37028064-37028083 Msa0729530:CDS 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 37027992 37029512 37027992 ID=Msa0729530;Name=Msa0729530
chr5_1 mRNA 37027992 37029512 37027992 ID=Msa0729530-mRNA-1;Parent=Msa0729530;Name=Msa0729530-mRNA-1;_AED=0.06;_eAED=0.08;_QI=0|0|0|1|1|1|2|0|303
chr5_1 exon 37027992 37028405 37027992 ID=Msa0729530-mRNA-1:exon:11220;Parent=Msa0729530-mRNA-1
chr5_1 exon 37029015 37029512 37029015 ID=Msa0729530-mRNA-1:exon:11221;Parent=Msa0729530-mRNA-1
chr5_1 CDS 37027992 37028405 37027992 ID=Msa0729530-mRNA-1:cds;Parent=Msa0729530-mRNA-1
chr5_1 CDS 37029015 37029512 37029015 ID=Msa0729530-mRNA-1:cds;Parent=Msa0729530-mRNA-1
Gene Sequence

>Msa0729530

ATGCAAGCTCACACATTCTCCTACATATCCTCAATTGAAACTAATAATGACACTGTTGATGAGTCTTCCATTTCACTCTCACTTGGCCCTCCTGGAACACACCAAAAACCTAAACTATCCTCCACATTAAATCACTCTTCTACTACTCTTCATCATCATCTTCATAATCACCTTCAAAAGCAAAACTTTACCATTGATGATGAGCAAAGTGGTGTAACAGTTGCACTTCACATTGGTCTTCCAACAAACATTTCACAAAACACAACACCTATTAGCAAACCTGATCATCATTTGGCTTCAGCTCCAATTCAAGGTCAATATTGGATTCCTTCACCTGCTCAAATCCTCATTGGACCAACACAGTTCTCTTGCACTGTTTGCAATAAAATGTTCAACCGTTTCAATAATATGCAGATGCATATGTGGGGACATGGATCACAATACAGAAAAGGACCAGAATCTCTAAGGGGAGTAAAACCAGCTTCATCAATGTTAAGACTTCCTTGCTATTGCTGTGCAGAGGGGTGCAAGAACAACATAGAGCATCCAAGGTCAAGACCACTCAAGGATTTCAGAACACTTCAAACACACTACAAGAGGAAGCATGGAGCAAAGCCATTCGGGTGTAGAAAGTGTGGGAAACCATTTGCAGTTAGAGGTGACTGGAGAACACATGAGAAAAATTGTGGAAAGCTTTGGTTTTGTATCTGTGGATCTGATTTCAAACACAAGAGATCTCTTAAAGATCATGTTCGTGCTTTCGGTGATGGTCATGCTCCACACACCGTCGAGAGTTGTGAAGATCAGGAAGTATTGTTAGGTGATGAATATGATGAAGAATTTGAAGGAGATGAAAATTATGAAGATGATGATGATAATGATAACATCGATCGAATGGTTTTCGGTTTTTAA
Protein sequence

>Msa0729530

MQAHTFSYISSIETNNDTVDESSISLSLGPPGTHQKPKLSSTLNHSSTTLHHHLHNHLQKQNFTIDDEQSGVTVALHIGLPTNISQNTTPISKPDHHLASAPIQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGVKPASSMLRLPCYCCAEGCKNNIEHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCEDQEVLLGDEYDEEFEGDENYEDDDDNDNIDRMVFGF*