Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729730 | XP_003614511.2 | 89.916 | 476 | 13 | 3 | 13 | 486 | 22 | 464 | 0.0 | 867 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729730 | sp|Q41558|HBP1C_WHEAT | 48.517 | 472 | 196 | 10 | 23 | 486 | 44 | 476 | 2.26e-137 | 407 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729730 | A0A396HTL1 | 89.916 | 476 | 13 | 3 | 13 | 486 | 22 | 464 | 0.0 | 867 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0729730 | TF | bZIP |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729730 | MtrunA17_Chr5g0422771 | 89.916 | 476 | 13 | 3 | 13 | 486 | 22 | 464 | 0.0 | 867 |
| Msa0729730 | MtrunA17_Chr7g0256211 | 50.951 | 473 | 180 | 13 | 15 | 486 | 31 | 452 | 1.05e-144 | 422 |
| Msa0729730 | MtrunA17_Chr8g0353501 | 55.643 | 381 | 124 | 5 | 113 | 486 | 124 | 466 | 2.10e-133 | 394 |
| Msa0729730 | MtrunA17_Chr1g0210151 | 58.311 | 379 | 98 | 8 | 127 | 486 | 3 | 340 | 8.94e-133 | 387 |
| Msa0729730 | MtrunA17_Chr1g0174701 | 47.368 | 361 | 154 | 5 | 130 | 486 | 178 | 506 | 3.99e-107 | 328 |
| Msa0729730 | MtrunA17_Chr3g0124601 | 45.745 | 376 | 164 | 4 | 115 | 486 | 22 | 361 | 1.86e-103 | 313 |
| Msa0729730 | MtrunA17_Chr7g0258321 | 48.235 | 340 | 139 | 5 | 151 | 486 | 157 | 463 | 2.20e-101 | 311 |
| Msa0729730 | MtrunA17_Chr4g0026401 | 45.278 | 360 | 142 | 6 | 132 | 486 | 152 | 461 | 2.97e-94 | 294 |
| Msa0729730 | MtrunA17_Chr2g0321431 | 48.287 | 321 | 123 | 4 | 166 | 486 | 192 | 469 | 2.28e-93 | 292 |
| Msa0729730 | MtrunA17_Chr8g0382861 | 40.800 | 375 | 171 | 7 | 115 | 486 | 30 | 356 | 2.77e-78 | 248 |
| Msa0729730 | MtrunA17_Chr3g0093451 | 66.477 | 176 | 53 | 4 | 159 | 330 | 36 | 209 | 1.36e-73 | 231 |
| Msa0729730 | MtrunA17_Chr3g0115371 | 40.439 | 319 | 156 | 3 | 166 | 484 | 63 | 347 | 1.07e-71 | 231 |
| Msa0729730 | MtrunA17_Chr5g0424861 | 42.271 | 317 | 146 | 4 | 168 | 483 | 67 | 347 | 3.92e-71 | 230 |
| Msa0729730 | MtrunA17_Chr5g0424851 | 36.820 | 239 | 120 | 3 | 246 | 483 | 14 | 222 | 1.29e-40 | 151 |
| Msa0729730 | MtrunA17_Chr5g0424851 | 34.615 | 234 | 123 | 2 | 241 | 474 | 223 | 426 | 6.29e-39 | 146 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729730 | AT1G68640.1 | 49.057 | 477 | 178 | 10 | 25 | 486 | 26 | 452 | 6.17e-130 | 385 |
| Msa0729730 | AT3G12250.6 | 57.576 | 363 | 109 | 7 | 134 | 486 | 3 | 330 | 5.45e-128 | 375 |
| Msa0729730 | AT3G12250.2 | 57.576 | 363 | 109 | 7 | 134 | 486 | 3 | 330 | 5.45e-128 | 375 |
| Msa0729730 | AT3G12250.7 | 57.576 | 363 | 109 | 7 | 134 | 486 | 3 | 330 | 5.45e-128 | 375 |
| Msa0729730 | AT3G12250.1 | 57.576 | 363 | 109 | 7 | 134 | 486 | 3 | 330 | 5.45e-128 | 375 |
| Msa0729730 | AT3G12250.3 | 57.637 | 347 | 107 | 5 | 145 | 486 | 13 | 324 | 4.46e-126 | 370 |
| Msa0729730 | AT3G12250.5 | 60.125 | 321 | 94 | 3 | 166 | 486 | 17 | 303 | 1.13e-125 | 368 |
| Msa0729730 | AT5G06950.2 | 61.371 | 321 | 90 | 3 | 166 | 486 | 44 | 330 | 2.62e-125 | 368 |
| Msa0729730 | AT5G06950.4 | 61.371 | 321 | 90 | 3 | 166 | 486 | 44 | 330 | 2.62e-125 | 368 |
| Msa0729730 | AT5G06950.1 | 61.371 | 321 | 90 | 3 | 166 | 486 | 44 | 330 | 2.62e-125 | 368 |
| Msa0729730 | AT5G06950.5 | 61.371 | 321 | 90 | 3 | 166 | 486 | 44 | 330 | 2.62e-125 | 368 |
| Msa0729730 | AT5G06950.3 | 61.371 | 321 | 90 | 3 | 166 | 486 | 44 | 330 | 2.62e-125 | 368 |
| Msa0729730 | AT3G12250.4 | 61.059 | 321 | 91 | 3 | 166 | 486 | 69 | 355 | 1.72e-124 | 367 |
| Msa0729730 | AT5G06960.2 | 57.009 | 321 | 104 | 3 | 166 | 486 | 44 | 330 | 8.02e-114 | 339 |
| Msa0729730 | AT5G06960.1 | 57.009 | 321 | 104 | 3 | 166 | 486 | 44 | 330 | 8.02e-114 | 339 |
| Msa0729730 | AT5G06960.3 | 57.009 | 321 | 104 | 3 | 166 | 486 | 24 | 310 | 1.06e-113 | 338 |
| Msa0729730 | AT5G06839.1 | 49.858 | 351 | 140 | 7 | 143 | 486 | 94 | 415 | 1.94e-103 | 315 |
| Msa0729730 | AT5G06839.2 | 49.284 | 349 | 146 | 5 | 143 | 486 | 94 | 416 | 2.26e-103 | 315 |
| Msa0729730 | AT5G06839.3 | 49.713 | 348 | 140 | 6 | 146 | 486 | 139 | 458 | 2.26e-103 | 317 |
| Msa0729730 | AT1G08320.2 | 50.156 | 321 | 117 | 4 | 166 | 486 | 52 | 329 | 7.43e-102 | 309 |
| Msa0729730 | AT1G08320.5 | 50.156 | 321 | 117 | 4 | 166 | 486 | 52 | 329 | 7.43e-102 | 309 |
| Msa0729730 | AT1G08320.1 | 50.156 | 321 | 117 | 4 | 166 | 486 | 176 | 453 | 1.95e-100 | 310 |
| Msa0729730 | AT1G08320.4 | 50.156 | 321 | 117 | 4 | 166 | 486 | 176 | 453 | 1.95e-100 | 310 |
| Msa0729730 | AT1G08320.3 | 50.156 | 321 | 117 | 4 | 166 | 486 | 176 | 453 | 1.95e-100 | 310 |
| Msa0729730 | AT5G10030.5 | 47.175 | 354 | 148 | 6 | 135 | 486 | 46 | 362 | 2.10e-95 | 293 |
| Msa0729730 | AT5G10030.3 | 47.175 | 354 | 148 | 6 | 135 | 486 | 46 | 362 | 2.10e-95 | 293 |
| Msa0729730 | AT5G10030.1 | 47.175 | 354 | 148 | 6 | 135 | 486 | 46 | 362 | 2.10e-95 | 293 |
| Msa0729730 | AT5G10030.4 | 47.175 | 354 | 148 | 6 | 135 | 486 | 46 | 362 | 2.10e-95 | 293 |
| Msa0729730 | AT5G10030.2 | 47.175 | 354 | 148 | 6 | 135 | 486 | 46 | 362 | 2.10e-95 | 293 |
| Msa0729730 | AT1G22070.1 | 47.432 | 331 | 137 | 5 | 157 | 486 | 88 | 382 | 3.06e-90 | 280 |
| Msa0729730 | AT1G77920.1 | 43.501 | 377 | 163 | 7 | 113 | 486 | 37 | 366 | 3.24e-90 | 280 |
| Msa0729730 | AT5G65210.6 | 47.335 | 319 | 132 | 4 | 168 | 486 | 14 | 296 | 2.15e-88 | 273 |
| Msa0729730 | AT5G65210.5 | 47.649 | 319 | 131 | 5 | 168 | 486 | 84 | 366 | 5.85e-88 | 274 |
| Msa0729730 | AT5G65210.7 | 47.649 | 319 | 131 | 5 | 168 | 486 | 84 | 366 | 5.85e-88 | 274 |
| Msa0729730 | AT5G65210.3 | 47.649 | 319 | 131 | 5 | 168 | 486 | 84 | 366 | 5.85e-88 | 274 |
| Msa0729730 | AT5G65210.1 | 47.649 | 319 | 131 | 5 | 168 | 486 | 84 | 366 | 5.85e-88 | 274 |
| Msa0729730 | AT5G65210.2 | 47.649 | 319 | 131 | 5 | 168 | 486 | 84 | 366 | 5.85e-88 | 274 |
| Msa0729730 | AT5G65210.4 | 47.649 | 319 | 131 | 5 | 168 | 486 | 84 | 366 | 5.85e-88 | 274 |
Find 105 sgRNAs with CRISPR-Local
Find 217 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGTGACCGTTTCCTTTAT+TGG | 0.194973 | 5_1:-37671249 | None:intergenic |
| AAGTCGAACAATATTGTTAT+TGG | 0.307310 | 5_1:+37670067 | Msa0729730:CDS |
| GTTGAGAATTGGGCTGATTC+TGG | 0.310388 | 5_1:+37670922 | Msa0729730:CDS |
| GGGAATAGCTTCCTTGCCTT+TGG | 0.313064 | 5_1:+37670888 | Msa0729730:CDS |
| GATGTATTTCACATGCTCTA+TGG | 0.319460 | 5_1:+37672131 | Msa0729730:CDS |
| ACTTTATGTTAGTCCAATAA+AGG | 0.326812 | 5_1:+37671236 | Msa0729730:intron |
| CATTTACCTTCTTCCGTAAC+CGG | 0.349444 | 5_1:-37671435 | None:intergenic |
| CATGTAATCAGATACATTTC+CGG | 0.361147 | 5_1:-37672662 | None:intergenic |
| TCAGTATCCGGTACAGGTTC+CGG | 0.367258 | 5_1:+37672643 | Msa0729730:CDS |
| GGTGGTAGTAACATGCAGTA+TGG | 0.375687 | 5_1:+37670088 | Msa0729730:CDS |
| GAAATTGTCATGTTGAGAAT+TGG | 0.381065 | 5_1:+37670911 | Msa0729730:CDS |
| CAAGTCCGCCCCTACTCCCT+TGG | 0.382396 | 5_1:-37673130 | None:intergenic |
| TCACATGAAGACGGTAACTT+AGG | 0.386515 | 5_1:-37672851 | None:intergenic |
| TACGAGCACTTAGTTCGTTA+TGG | 0.393700 | 5_1:+37673098 | Msa0729730:CDS |
| TTCAAATGGTGCAGGGTGTT+CGG | 0.396217 | 5_1:+37670822 | Msa0729730:CDS |
| GGTCATTCTTCTGTTGGAAA+TGG | 0.397460 | 5_1:+37671778 | Msa0729730:CDS |
| GGAATAGCTTCCTTGCCTTT+GGG | 0.406539 | 5_1:+37670889 | Msa0729730:CDS |
| TGTTCATTGCAAATGCCATC+TGG | 0.411477 | 5_1:-37672687 | None:intergenic |
| GGTGCAGGGTGTTCGGATGC+AGG | 0.422787 | 5_1:+37670829 | Msa0729730:CDS |
| GTGATCTTCAGCTCTGAACT+TGG | 0.429104 | 5_1:-37671282 | None:intergenic |
| ATCGGCGTTAAATTCTCAAA+TGG | 0.431815 | 5_1:+37672022 | Msa0729730:CDS |
| GTTGGCACGCCCAAGGGAGT+AGG | 0.432197 | 5_1:+37673120 | Msa0729730:CDS |
| AATGAACAAGCTTGCACTCC+TGG | 0.437038 | 5_1:+37672702 | Msa0729730:CDS |
| TCTGCTTGTCGATGGTGTTA+TGG | 0.438171 | 5_1:+37672061 | Msa0729730:CDS |
| CGGAAATGTATCTGATTACA+TGG | 0.440246 | 5_1:+37672663 | Msa0729730:CDS |
| TTCACATGCTCTATGGGTTG+TGG | 0.444720 | 5_1:+37672138 | Msa0729730:CDS |
| GAAGAATGACCTTGATCTCC+TGG | 0.454057 | 5_1:-37671766 | None:intergenic |
| CACATGAAGACGGTAACTTA+GGG | 0.455073 | 5_1:-37672850 | None:intergenic |
| TTGGCACGCCCAAGGGAGTA+GGG | 0.457145 | 5_1:+37673121 | Msa0729730:CDS |
| TCCTCCACACCCTCAGTATC+CGG | 0.457605 | 5_1:+37672631 | Msa0729730:CDS |
| GTTAACTGAAAATCAGTTGA+TGG | 0.459301 | 5_1:+37672516 | Msa0729730:CDS |
| AAGTCCGCCCCTACTCCCTT+GGG | 0.467619 | 5_1:-37673129 | None:intergenic |
| AAATTGTCATGTTGAGAATT+GGG | 0.469910 | 5_1:+37670912 | Msa0729730:CDS |
| TATTTAGATTAAAGAGCATA+GGG | 0.475914 | 5_1:+37672099 | Msa0729730:CDS |
| ATTGCAAATCCAGGAGATCA+AGG | 0.479524 | 5_1:+37671757 | Msa0729730:CDS |
| TGACATGGAATACGCCCATT+GGG | 0.481705 | 5_1:+37671965 | Msa0729730:CDS |
| GCTTCAACGAGTACGTCAAC+AGG | 0.481742 | 5_1:+37671638 | Msa0729730:CDS |
| ATGTATTTCACATGCTCTAT+GGG | 0.482660 | 5_1:+37672132 | Msa0729730:CDS |
| GATCAAGGTCATTCTTCTGT+TGG | 0.485204 | 5_1:+37671772 | Msa0729730:CDS |
| TGTTAGTCCAATAAAGGAAA+CGG | 0.491384 | 5_1:+37671242 | Msa0729730:intron |
| GAGATTACTTCAAATGGTGC+AGG | 0.493511 | 5_1:+37670814 | Msa0729730:CDS |
| TCTGCAGAGATTACTTCAAA+TGG | 0.501428 | 5_1:+37670808 | Msa0729730:CDS |
| TCGAACAATATTGTTATTGG+TGG | 0.502911 | 5_1:+37670070 | Msa0729730:CDS |
| GGCATGTTTATTGCAAATCC+AGG | 0.503604 | 5_1:+37671748 | Msa0729730:CDS |
| TTGACATGGAATACGCCCAT+TGG | 0.507084 | 5_1:+37671964 | Msa0729730:CDS |
| ATAGGCATATGTACAACAGC+TGG | 0.511396 | 5_1:+37671578 | Msa0729730:intron |
| GCATCTTGTTGTGGAAAGAA+AGG | 0.513779 | 5_1:-37669917 | None:intergenic |
| CTCAGAATCGCGAGGCGGCA+AGG | 0.517608 | 5_1:+37671407 | Msa0729730:CDS |
| AGGGAAGGTCATACTGGAGT+AGG | 0.524392 | 5_1:-37672894 | None:intergenic |
| CGTTATGGTTGGCACGCCCA+AGG | 0.525689 | 5_1:+37673113 | Msa0729730:CDS |
| TACATTTCCGGAACCTGTAC+CGG | 0.526133 | 5_1:-37672650 | None:intergenic |
| AGCACTTAGTTCGTTATGGT+TGG | 0.528902 | 5_1:+37673102 | Msa0729730:CDS |
| TCGGCGTTAAATTCTCAAAT+GGG | 0.530762 | 5_1:+37672023 | Msa0729730:CDS |
| TCTTCAGCAGTCTACTCAGC+AGG | 0.536008 | 5_1:+37672549 | Msa0729730:CDS |
| GAAGAGCCGGTTACGGAAGA+AGG | 0.537480 | 5_1:+37671429 | Msa0729730:CDS |
| GTGCAGGGTGTTCGGATGCA+GGG | 0.541110 | 5_1:+37670830 | Msa0729730:CDS |
| ACTCACTTGGTGTTTATCAT+CGG | 0.542557 | 5_1:-37671004 | None:intergenic |
| TTGATGCTCGTCAACCCAAT+GGG | 0.548501 | 5_1:-37671979 | None:intergenic |
| CGGCAAGGAAGAGCCGGTTA+CGG | 0.550063 | 5_1:+37671422 | Msa0729730:CDS |
| GCAGAGTTTCTTGCTTCAAG+AGG | 0.550378 | 5_1:-37673000 | None:intergenic |
| TGACGACACGTCAGACTGCA+AGG | 0.551582 | 5_1:+37673041 | Msa0729730:CDS |
| CCTTGTGAAGGAAATCCTCC+AGG | 0.552077 | 5_1:-37672720 | None:intergenic |
| TTAACTGAAAATCAGTTGAT+GGG | 0.554063 | 5_1:+37672517 | Msa0729730:CDS |
| GCGAGGCGGCAAGGAAGAGC+CGG | 0.555351 | 5_1:+37671416 | Msa0729730:CDS |
| GTTATGGTTGGCACGCCCAA+GGG | 0.555357 | 5_1:+37673114 | Msa0729730:CDS |
| GTGGTAGTAACATGCAGTAT+GGG | 0.556094 | 5_1:+37670089 | Msa0729730:CDS |
| ATCTGATTACATGGGCCAGA+TGG | 0.556171 | 5_1:+37672672 | Msa0729730:CDS |
| TGGAAGTATCATCAGTCTGT+TGG | 0.557670 | 5_1:-37670963 | None:intergenic |
| CCTTGAGAATTTCAGATGAA+CGG | 0.560398 | 5_1:-37672202 | None:intergenic |
| GCAGTCTACTCAGCAGGCTG+AGG | 0.561351 | 5_1:+37672555 | Msa0729730:CDS |
| GTTGATGCTCGTCAACCCAA+TGG | 0.564292 | 5_1:-37671980 | None:intergenic |
| TTATTTAGATTAAAGAGCAT+AGG | 0.568168 | 5_1:+37672098 | Msa0729730:CDS |
| ACACCCTCAGTATCCGGTAC+AGG | 0.569132 | 5_1:+37672637 | Msa0729730:CDS |
| GATTCTGAGCAAGTCTGCGA+AGG | 0.570330 | 5_1:-37671393 | None:intergenic |
| CCGTTCATCTGAAATTCTCA+AGG | 0.573160 | 5_1:+37672202 | Msa0729730:CDS |
| AAATCAACAGCATCTTGTTG+TGG | 0.584033 | 5_1:-37669926 | None:intergenic |
| CCTGGAGGATTTCCTTCACA+AGG | 0.589186 | 5_1:+37672720 | Msa0729730:CDS |
| GCTGAGGATGCTTTATCTCA+CGG | 0.592632 | 5_1:+37672571 | Msa0729730:CDS |
| TGTACCGGATACTGAGGGTG+TGG | 0.601254 | 5_1:-37672635 | None:intergenic |
| GAATTGGGCTGATTCTGGTG+TGG | 0.601339 | 5_1:+37670927 | Msa0729730:CDS |
| AAATGTAATCATTTCTGACA+AGG | 0.602307 | 5_1:-37673069 | None:intergenic |
| ATGACAATTTCCCAAAGGCA+AGG | 0.624956 | 5_1:-37670899 | None:intergenic |
| GGTATCGATATCAATATCAG+TGG | 0.627662 | 5_1:-37670983 | None:intergenic |
| ATTCTGAGCAAGTCTGCGAA+GGG | 0.627771 | 5_1:-37671392 | None:intergenic |
| AGGTGCTCTAGCATTTGACA+TGG | 0.632527 | 5_1:+37671950 | Msa0729730:intron |
| TCAACATGACAATTTCCCAA+AGG | 0.632745 | 5_1:-37670904 | None:intergenic |
| TATGCTCAATGATCTAAGAT+CGG | 0.636922 | 5_1:+37672004 | Msa0729730:CDS |
| ACCGGATACTGAGGGTGTGG+AGG | 0.638958 | 5_1:-37672632 | None:intergenic |
| GGAACCTGTACCGGATACTG+AGG | 0.640922 | 5_1:-37672641 | None:intergenic |
| GACGACACGTCAGACTGCAA+GGG | 0.641820 | 5_1:+37673042 | Msa0729730:CDS |
| GTTCAGAGCTGAAGATCACA+AGG | 0.647306 | 5_1:+37671286 | Msa0729730:CDS |
| GGATGCTTTATCTCACGGCA+TGG | 0.651448 | 5_1:+37672576 | Msa0729730:CDS |
| GAACAAGCTTGCACTCCTGG+AGG | 0.653361 | 5_1:+37672705 | Msa0729730:CDS |
| GAATTGCATCTGCTTGTCGA+TGG | 0.653447 | 5_1:+37672053 | Msa0729730:CDS |
| AGATTACTTCAAATGGTGCA+GGG | 0.655273 | 5_1:+37670815 | Msa0729730:CDS |
| TTTCAGTTAACGGCTCGAGG+TGG | 0.666369 | 5_1:-37672504 | None:intergenic |
| GTATGGGACAACAATTAACA+TGG | 0.671970 | 5_1:+37670105 | Msa0729730:CDS |
| CAGACTTGCTCAGAATCGCG+AGG | 0.675205 | 5_1:+37671399 | Msa0729730:CDS |
| GGAAATGTATCTGATTACAT+GGG | 0.675444 | 5_1:+37672664 | Msa0729730:CDS |
| ATTTAGATTAAAGAGCATAG+GGG | 0.679279 | 5_1:+37672100 | Msa0729730:CDS |
| GAACCTGTACCGGATACTGA+GGG | 0.682981 | 5_1:-37672640 | None:intergenic |
| GCAGCAACTGATGTACAACA+AGG | 0.689178 | 5_1:+37670867 | Msa0729730:CDS |
| ATAGAGCATGTGAAATACAT+CGG | 0.690239 | 5_1:-37672129 | None:intergenic |
| ACTTGCTCAGAATCGCGAGG+CGG | 0.696700 | 5_1:+37671402 | Msa0729730:CDS |
| CAGCAACTGATGTACAACAA+GGG | 0.723615 | 5_1:+37670868 | Msa0729730:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GACTAAAATAAAATTATGTT+AGG | - | chr5_1:37670165-37670184 | None:intergenic | 15.0% |
| !!! | CCATTTTTTTGATAAAATTA+GGG | - | chr5_1:37670674-37670693 | None:intergenic | 15.0% |
| !!! | TCCATTTTTTTGATAAAATT+AGG | - | chr5_1:37670675-37670694 | None:intergenic | 15.0% |
| !!! | TTAAGCTTTAATGATATATA+CGG | + | chr5_1:37671543-37671562 | Msa0729730:intron | 15.0% |
| !!! | TTTTTTGATAAAATTAGGGA+AGG | - | chr5_1:37670670-37670689 | None:intergenic | 20.0% |
| !!! | CCCTAATTTTATCAAAAAAA+TGG | + | chr5_1:37670671-37670690 | Msa0729730:intron | 20.0% |
| !!! | AAAAAATGGACTTAATAAAC+TGG | + | chr5_1:37670685-37670704 | Msa0729730:intron | 20.0% |
| !!! | AAAAATGGACTTAATAAACT+GGG | + | chr5_1:37670686-37670705 | Msa0729730:intron | 20.0% |
| !! | TTCAATTGTATTGTTTGTAT+CGG | - | chr5_1:37671077-37671096 | None:intergenic | 20.0% |
| !! | AATATAGATACATATGCAAA+AGG | - | chr5_1:37671484-37671503 | None:intergenic | 20.0% |
| !! | ATAATGTTTATTGATCATTC+AGG | + | chr5_1:37671930-37671949 | Msa0729730:intron | 20.0% |
| !!! | TTATTTAGATTAAAGAGCAT+AGG | + | chr5_1:37672098-37672117 | Msa0729730:CDS | 20.0% |
| !!! | TATTTAGATTAAAGAGCATA+GGG | + | chr5_1:37672099-37672118 | Msa0729730:CDS | 20.0% |
| !! | CAAATAAAAAATCTTTCTAC+TGG | - | chr5_1:37672170-37672189 | None:intergenic | 20.0% |
| !!! | CAGTAGAAAGATTTTTTATT+TGG | + | chr5_1:37672168-37672187 | Msa0729730:CDS | 20.0% |
| !! | TTAAAAAACACACTATGAAT+TGG | - | chr5_1:37672235-37672254 | None:intergenic | 20.0% |
| !!! | TTCATAGTGTGTTTTTTAAT+TGG | + | chr5_1:37672236-37672255 | Msa0729730:intron | 20.0% |
| !! | TTCTCTTCTTTTACATGTTT+TGG | + | chr5_1:37669963-37669982 | Msa0729730:intron | 25.0% |
| !!! | TTTAAACTGTTTTTTTGTGC+AGG | + | chr5_1:37670025-37670044 | Msa0729730:intron | 25.0% |
| ! | AAGTCGAACAATATTGTTAT+TGG | + | chr5_1:37670067-37670086 | Msa0729730:CDS | 25.0% |
| !!! | TTATGTTGCATTTTTTCACA+GGG | - | chr5_1:37670187-37670206 | None:intergenic | 25.0% |
| !!! | ATTATGTTGCATTTTTTCAC+AGG | - | chr5_1:37670188-37670207 | None:intergenic | 25.0% |
| !! | TGATTCTAAAGAACAATTTG+TGG | - | chr5_1:37670233-37670252 | None:intergenic | 25.0% |
| ! | ATCATTAACTCTTACACTTT+AGG | + | chr5_1:37670249-37670268 | Msa0729730:intron | 25.0% |
| !! | ATTTTGAACACTATACTTTG+AGG | - | chr5_1:37670317-37670336 | None:intergenic | 25.0% |
| ! | ATGATTATTAGTGTAACACT+AGG | + | chr5_1:37670364-37670383 | Msa0729730:intron | 25.0% |
| !! | TTGATTCTGTAATTTTCATG+AGG | + | chr5_1:37670398-37670417 | Msa0729730:intron | 25.0% |
| ! | CTAACCTCATTAAAATTACA+GGG | - | chr5_1:37670535-37670554 | None:intergenic | 25.0% |
| !! | TTTGTGTTTTCATAGAATGT+TGG | + | chr5_1:37670784-37670803 | Msa0729730:intron | 25.0% |
| !! | TTGTGTTTTCATAGAATGTT+GGG | + | chr5_1:37670785-37670804 | Msa0729730:intron | 25.0% |
| ! | AAATTGTCATGTTGAGAATT+GGG | + | chr5_1:37670912-37670931 | Msa0729730:CDS | 25.0% |
| ! | ACTTTATGTTAGTCCAATAA+AGG | + | chr5_1:37671236-37671255 | Msa0729730:intron | 25.0% |
| !!! | TTTTAATCTAGTTCCTGATT+TGG | + | chr5_1:37671352-37671371 | Msa0729730:intron | 25.0% |
| !!! | TATATTTTTGTTGTAGACCA+AGG | + | chr5_1:37671498-37671517 | Msa0729730:intron | 25.0% |
| !!! | ATATTTTTGTTGTAGACCAA+GGG | + | chr5_1:37671499-37671518 | Msa0729730:intron | 25.0% |
| ! | TTAATGATATATACGGATGT+TGG | + | chr5_1:37671550-37671569 | Msa0729730:intron | 25.0% |
| ! | CAATAAACATTATCACAACA+CGG | - | chr5_1:37671923-37671942 | None:intergenic | 25.0% |
| !! | ATTTAGATTAAAGAGCATAG+GGG | + | chr5_1:37672100-37672119 | Msa0729730:CDS | 25.0% |
| !!! | GAAAGATTTTTTATTTGGCA+TGG | + | chr5_1:37672173-37672192 | Msa0729730:CDS | 25.0% |
| !!! | TGTTTTTTAATTGGAGAATG+AGG | + | chr5_1:37672245-37672264 | Msa0729730:intron | 25.0% |
| !!! | ATCAACTGATTTTCAGTTAA+CGG | - | chr5_1:37672517-37672536 | None:intergenic | 25.0% |
| ! | TTAACTGAAAATCAGTTGAT+GGG | + | chr5_1:37672517-37672536 | Msa0729730:CDS | 25.0% |
| !! | ATATCTATTTTACCTTGTGA+AGG | - | chr5_1:37672735-37672754 | None:intergenic | 25.0% |
| ! | AGTTAATCTTTCTATGCTAA+GGG | + | chr5_1:37672757-37672776 | Msa0729730:intron | 25.0% |
| !!! | TCTATTTTTCACATTCATCA+AGG | - | chr5_1:37672815-37672834 | None:intergenic | 25.0% |
| ! | ACAAAAAATTCACATGAAGA+CGG | - | chr5_1:37672863-37672882 | None:intergenic | 25.0% |
| ! | AAATGTAATCATTTCTGACA+AGG | - | chr5_1:37673072-37673091 | None:intergenic | 25.0% |
| ! | GTTTTTGATGAAACAAACAG+AGG | + | chr5_1:37669833-37669852 | Msa0729730:CDS | 30.0% |
| ! | ACAATGCGTTTTTCTGATAT+TGG | + | chr5_1:37669875-37669894 | Msa0729730:CDS | 30.0% |
| ! | TCGAACAATATTGTTATTGG+TGG | + | chr5_1:37670070-37670089 | Msa0729730:CDS | 30.0% |
| AACCTCTTGAGTAAAAAACA+GGG | + | chr5_1:37670430-37670449 | Msa0729730:intron | 30.0% | |
| GCTAACCTCATTAAAATTAC+AGG | - | chr5_1:37670536-37670555 | None:intergenic | 30.0% | |
| ! | GGATAAACTATTACTTGCTA+GGG | - | chr5_1:37670730-37670749 | None:intergenic | 30.0% |
| AGGATAAACTATTACTTGCT+AGG | - | chr5_1:37670731-37670750 | None:intergenic | 30.0% | |
| GATGCAAAACAAACAACATA+AGG | - | chr5_1:37670751-37670770 | None:intergenic | 30.0% | |
| GAAATTGTCATGTTGAGAAT+TGG | + | chr5_1:37670911-37670930 | Msa0729730:CDS | 30.0% | |
| AGCAAAACATGTATGAGAAA+TGG | - | chr5_1:37671037-37671056 | None:intergenic | 30.0% | |
| TTGTGTATCTCAATTCAAGA+TGG | - | chr5_1:37671135-37671154 | None:intergenic | 30.0% | |
| TGTTAGTCCAATAAAGGAAA+CGG | + | chr5_1:37671242-37671261 | Msa0729730:intron | 30.0% | |
| !! | TATTTTTGTTGTAGACCAAG+GGG | + | chr5_1:37671500-37671519 | Msa0729730:intron | 30.0% |
| !!! | ATACGGATGTTGGTTTTAAT+AGG | + | chr5_1:37671560-37671579 | Msa0729730:intron | 30.0% |
| GATTGTACATAAACATCAAC+TGG | - | chr5_1:37671689-37671708 | None:intergenic | 30.0% | |
| GTTGATGTTTATGTACAATC+TGG | + | chr5_1:37671689-37671708 | Msa0729730:intron | 30.0% | |
| !!! | TCTGGTTTTTTTTTTCCTCA+TGG | + | chr5_1:37671707-37671726 | Msa0729730:intron | 30.0% |
| CATTAAAATTCACAACCATG+AGG | - | chr5_1:37671725-37671744 | None:intergenic | 30.0% | |
| !! | ATGGTTGTGAATTTTAATGC+AGG | + | chr5_1:37671726-37671745 | Msa0729730:intron | 30.0% |
| !! | TGGTTGTGAATTTTAATGCA+GGG | + | chr5_1:37671727-37671746 | Msa0729730:intron | 30.0% |
| ! | TATGCTCAATGATCTAAGAT+CGG | + | chr5_1:37672004-37672023 | Msa0729730:CDS | 30.0% |
| ATAGAGCATGTGAAATACAT+CGG | - | chr5_1:37672132-37672151 | None:intergenic | 30.0% | |
| ATGTATTTCACATGCTCTAT+GGG | + | chr5_1:37672132-37672151 | Msa0729730:CDS | 30.0% | |
| ACTTTATAACACAAGGGAAA+AGG | - | chr5_1:37672333-37672352 | None:intergenic | 30.0% | |
| AGCTTGACTTTATAACACAA+GGG | - | chr5_1:37672339-37672358 | None:intergenic | 30.0% | |
| GTTAACTGAAAATCAGTTGA+TGG | + | chr5_1:37672516-37672535 | Msa0729730:CDS | 30.0% | |
| CATGTAATCAGATACATTTC+CGG | - | chr5_1:37672665-37672684 | None:intergenic | 30.0% | |
| GGAAATGTATCTGATTACAT+GGG | + | chr5_1:37672664-37672683 | Msa0729730:CDS | 30.0% | |
| CAGTTAATCTTTCTATGCTA+AGG | + | chr5_1:37672756-37672775 | Msa0729730:intron | 30.0% | |
| !! | TTGTTGTCATGCTTGTTTTT+AGG | + | chr5_1:37672973-37672992 | Msa0729730:intron | 30.0% |
| AAATCAACAGCATCTTGTTG+TGG | - | chr5_1:37669929-37669948 | None:intergenic | 35.0% | |
| GTATGGGACAACAATTAACA+TGG | + | chr5_1:37670105-37670124 | Msa0729730:CDS | 35.0% | |
| ! | ATGTTAAACTCTTTTCACCG+AGG | - | chr5_1:37670289-37670308 | None:intergenic | 35.0% |
| ! | AATTCAAATTCCCTCTGAGA+CGG | + | chr5_1:37670334-37670353 | Msa0729730:intron | 35.0% |
| CAACCTCTTGAGTAAAAAAC+AGG | + | chr5_1:37670429-37670448 | Msa0729730:intron | 35.0% | |
| !!! | TACCCTGTTTTTTACTCAAG+AGG | - | chr5_1:37670435-37670454 | None:intergenic | 35.0% |
| CGTACAATACACCAAATAGT+GGG | + | chr5_1:37670461-37670480 | Msa0729730:intron | 35.0% | |
| ATTAAAATTACAGGGCAACC+TGG | - | chr5_1:37670527-37670546 | None:intergenic | 35.0% | |
| !! | GTTGCCCTGTAATTTTAATG+AGG | + | chr5_1:37670528-37670547 | Msa0729730:intron | 35.0% |
| TTAGCTCAGTTATTAGAGCT+TGG | + | chr5_1:37670551-37670570 | Msa0729730:intron | 35.0% | |
| ! | TTTTACAACTATCTCCGAGA+GGG | - | chr5_1:37670607-37670626 | None:intergenic | 35.0% |
| ! | ATTTTACAACTATCTCCGAG+AGG | - | chr5_1:37670608-37670627 | None:intergenic | 35.0% |
| TCTGCAGAGATTACTTCAAA+TGG | + | chr5_1:37670808-37670827 | Msa0729730:CDS | 35.0% | |
| AGATTACTTCAAATGGTGCA+GGG | + | chr5_1:37670815-37670834 | Msa0729730:CDS | 35.0% | |
| TCAACATGACAATTTCCCAA+AGG | - | chr5_1:37670907-37670926 | None:intergenic | 35.0% | |
| !! | GGTATCGATATCAATATCAG+TGG | - | chr5_1:37670986-37671005 | None:intergenic | 35.0% |
| !! | ACTCACTTGGTGTTTATCAT+CGG | - | chr5_1:37671007-37671026 | None:intergenic | 35.0% |
| AACATGTATGAGAAATGGAG+AGG | - | chr5_1:37671032-37671051 | None:intergenic | 35.0% | |
| !! | GAAAAAAGAGCATCCAAATC+AGG | - | chr5_1:37671368-37671387 | None:intergenic | 35.0% |
| AAATGGTCTCGATGGAAATA+TGG | + | chr5_1:37671453-37671472 | Msa0729730:intron | 35.0% | |
| AATGGTCTCGATGGAAATAT+GGG | + | chr5_1:37671454-37671473 | Msa0729730:intron | 35.0% | |
| AAACATTATCACAACACGGT+GGG | - | chr5_1:37671919-37671938 | None:intergenic | 35.0% | |
| TAAACATTATCACAACACGG+TGG | - | chr5_1:37671920-37671939 | None:intergenic | 35.0% | |
| ATCGGCGTTAAATTCTCAAA+TGG | + | chr5_1:37672022-37672041 | Msa0729730:CDS | 35.0% | |
| TCGGCGTTAAATTCTCAAAT+GGG | + | chr5_1:37672023-37672042 | Msa0729730:CDS | 35.0% | |
| GATGTATTTCACATGCTCTA+TGG | + | chr5_1:37672131-37672150 | Msa0729730:CDS | 35.0% | |
| CCTTGAGAATTTCAGATGAA+CGG | - | chr5_1:37672205-37672224 | None:intergenic | 35.0% | |
| GAGCTTGACTTTATAACACA+AGG | - | chr5_1:37672340-37672359 | None:intergenic | 35.0% | |
| GTACTGTTGAATTGACTATG+AGG | - | chr5_1:37672380-37672399 | None:intergenic | 35.0% | |
| CGGAAATGTATCTGATTACA+TGG | + | chr5_1:37672663-37672682 | Msa0729730:CDS | 35.0% | |
| AACCATGTGTTTGAACTACT+TGG | - | chr5_1:37672926-37672945 | None:intergenic | 35.0% | |
| ! | GCATCTTGTTGTGGAAAGAA+AGG | - | chr5_1:37669920-37669939 | None:intergenic | 40.0% |
| GTGGTAGTAACATGCAGTAT+GGG | + | chr5_1:37670089-37670108 | Msa0729730:CDS | 40.0% | |
| ! | CATTTTACAACCGTCTCAGA+GGG | - | chr5_1:37670347-37670366 | None:intergenic | 40.0% |
| ! | TCATTTTACAACCGTCTCAG+AGG | - | chr5_1:37670348-37670367 | None:intergenic | 40.0% |
| GCGTACAATACACCAAATAG+TGG | + | chr5_1:37670460-37670479 | Msa0729730:intron | 40.0% | |
| AGTGATGTTCAAATCCCTCT+CGG | + | chr5_1:37670590-37670609 | Msa0729730:intron | 40.0% | |
| GAGATTACTTCAAATGGTGC+AGG | + | chr5_1:37670814-37670833 | Msa0729730:CDS | 40.0% | |
| CAGCAACTGATGTACAACAA+GGG | + | chr5_1:37670868-37670887 | Msa0729730:CDS | 40.0% | |
| ATGACAATTTCCCAAAGGCA+AGG | - | chr5_1:37670902-37670921 | None:intergenic | 40.0% | |
| !! | TGGAAGTATCATCAGTCTGT+TGG | - | chr5_1:37670966-37670985 | None:intergenic | 40.0% |
| AAATGGAGAGGTAACTCACT+TGG | - | chr5_1:37671020-37671039 | None:intergenic | 40.0% | |
| ! | TGTGTTTTGCTGACATCTGA+TGG | + | chr5_1:37671202-37671221 | Msa0729730:intron | 40.0% |
| AGAGTGACCGTTTCCTTTAT+TGG | - | chr5_1:37671252-37671271 | None:intergenic | 40.0% | |
| CATTTACCTTCTTCCGTAAC+CGG | - | chr5_1:37671438-37671457 | None:intergenic | 40.0% | |
| AAGAAGGTAAATGGTCTCGA+TGG | + | chr5_1:37671445-37671464 | Msa0729730:intron | 40.0% | |
| CTTTGAATTCAGTAACCCCT+TGG | - | chr5_1:37671518-37671537 | None:intergenic | 40.0% | |
| CAAGGGGTTACTGAATTCAA+AGG | + | chr5_1:37671516-37671535 | Msa0729730:intron | 40.0% | |
| ATAGGCATATGTACAACAGC+TGG | + | chr5_1:37671578-37671597 | Msa0729730:intron | 40.0% | |
| GGCATGTTTATTGCAAATCC+AGG | + | chr5_1:37671748-37671767 | Msa0729730:CDS | 40.0% | |
| ATTGCAAATCCAGGAGATCA+AGG | + | chr5_1:37671757-37671776 | Msa0729730:CDS | 40.0% | |
| GATCAAGGTCATTCTTCTGT+TGG | + | chr5_1:37671772-37671791 | Msa0729730:CDS | 40.0% | |
| GGTCATTCTTCTGTTGGAAA+TGG | + | chr5_1:37671778-37671797 | Msa0729730:CDS | 40.0% | |
| AACATTATCACAACACGGTG+GGG | - | chr5_1:37671918-37671937 | None:intergenic | 40.0% | |
| ! | CCGTTCATCTGAAATTCTCA+AGG | + | chr5_1:37672202-37672221 | Msa0729730:CDS | 40.0% |
| TGTTCATTGCAAATGCCATC+TGG | - | chr5_1:37672690-37672709 | None:intergenic | 40.0% | |
| CACATGAAGACGGTAACTTA+GGG | - | chr5_1:37672853-37672872 | None:intergenic | 40.0% | |
| TCACATGAAGACGGTAACTT+AGG | - | chr5_1:37672854-37672873 | None:intergenic | 40.0% | |
| TTGAACTACTTGGCGAAGAA+GGG | - | chr5_1:37672916-37672935 | None:intergenic | 40.0% | |
| TTTGAACTACTTGGCGAAGA+AGG | - | chr5_1:37672917-37672936 | None:intergenic | 40.0% | |
| TACGAGCACTTAGTTCGTTA+TGG | + | chr5_1:37673098-37673117 | Msa0729730:CDS | 40.0% | |
| AGCACTTAGTTCGTTATGGT+TGG | + | chr5_1:37673102-37673121 | Msa0729730:CDS | 40.0% | |
| GGTGGTAGTAACATGCAGTA+TGG | + | chr5_1:37670088-37670107 | Msa0729730:CDS | 45.0% | |
| TCTTACACTTTAGGCGCTAC+AGG | + | chr5_1:37670258-37670277 | Msa0729730:intron | 45.0% | |
| GGATTTGAACATCACTCCCT+CGG | - | chr5_1:37670586-37670605 | None:intergenic | 45.0% | |
| ! | TTCAAATGGTGCAGGGTGTT+CGG | + | chr5_1:37670822-37670841 | Msa0729730:CDS | 45.0% |
| GCAGCAACTGATGTACAACA+AGG | + | chr5_1:37670867-37670886 | Msa0729730:CDS | 45.0% | |
| GGAATAGCTTCCTTGCCTTT+GGG | + | chr5_1:37670889-37670908 | Msa0729730:CDS | 45.0% | |
| ! | GTTGAGAATTGGGCTGATTC+TGG | + | chr5_1:37670922-37670941 | Msa0729730:CDS | 45.0% |
| !! | GTGATCTTCAGCTCTGAACT+TGG | - | chr5_1:37671285-37671304 | None:intergenic | 45.0% |
| GTTCAGAGCTGAAGATCACA+AGG | + | chr5_1:37671286-37671305 | Msa0729730:CDS | 45.0% | |
| ATTCTGAGCAAGTCTGCGAA+GGG | - | chr5_1:37671395-37671414 | None:intergenic | 45.0% | |
| CGGTTACGGAAGAAGGTAAA+TGG | + | chr5_1:37671436-37671455 | Msa0729730:intron | 45.0% | |
| GAAGAATGACCTTGATCTCC+TGG | - | chr5_1:37671769-37671788 | None:intergenic | 45.0% | |
| ACATTATCACAACACGGTGG+GGG | - | chr5_1:37671917-37671936 | None:intergenic | 45.0% | |
| AGGTGCTCTAGCATTTGACA+TGG | + | chr5_1:37671950-37671969 | Msa0729730:intron | 45.0% | |
| TTGACATGGAATACGCCCAT+TGG | + | chr5_1:37671964-37671983 | Msa0729730:CDS | 45.0% | |
| TGACATGGAATACGCCCATT+GGG | + | chr5_1:37671965-37671984 | Msa0729730:CDS | 45.0% | |
| TTGATGCTCGTCAACCCAAT+GGG | - | chr5_1:37671982-37672001 | None:intergenic | 45.0% | |
| GAATTGCATCTGCTTGTCGA+TGG | + | chr5_1:37672053-37672072 | Msa0729730:CDS | 45.0% | |
| ! | TCTGCTTGTCGATGGTGTTA+TGG | + | chr5_1:37672061-37672080 | Msa0729730:CDS | 45.0% |
| ! | TTCACATGCTCTATGGGTTG+TGG | + | chr5_1:37672138-37672157 | Msa0729730:CDS | 45.0% |
| ! | GATTTTCAGTTAACGGCTCG+AGG | - | chr5_1:37672510-37672529 | None:intergenic | 45.0% |
| GCTGAGGATGCTTTATCTCA+CGG | + | chr5_1:37672571-37672590 | Msa0729730:CDS | 45.0% | |
| TACATTTCCGGAACCTGTAC+CGG | - | chr5_1:37672653-37672672 | None:intergenic | 45.0% | |
| ATCTGATTACATGGGCCAGA+TGG | + | chr5_1:37672672-37672691 | Msa0729730:CDS | 45.0% | |
| AATGAACAAGCTTGCACTCC+TGG | + | chr5_1:37672702-37672721 | Msa0729730:CDS | 45.0% | |
| CGCCAAGTAGTTCAAACACA+TGG | + | chr5_1:37672921-37672940 | Msa0729730:intron | 45.0% | |
| GCAGAGTTTCTTGCTTCAAG+AGG | - | chr5_1:37673003-37673022 | None:intergenic | 45.0% | |
| !! | ATTATTATTAATTAATAAAG+TGG | - | chr5_1:37670643-37670662 | None:intergenic | 5.0% |
| !! | ATTAAGAATAATTAATTATA+TGG | - | chr5_1:37672437-37672456 | None:intergenic | 5.0% |
| CTAAAGCTCCTGCATACGCA+GGG | - | chr5_1:37670500-37670519 | None:intergenic | 50.0% | |
| ACTAAAGCTCCTGCATACGC+AGG | - | chr5_1:37670501-37670520 | None:intergenic | 50.0% | |
| ! | TGCAGGAGCTTTAGTGTACC+AGG | + | chr5_1:37670506-37670525 | Msa0729730:intron | 50.0% |
| GGGAATAGCTTCCTTGCCTT+TGG | + | chr5_1:37670888-37670907 | Msa0729730:CDS | 50.0% | |
| ! | GAATTGGGCTGATTCTGGTG+TGG | + | chr5_1:37670927-37670946 | Msa0729730:CDS | 50.0% |
| GATTCTGAGCAAGTCTGCGA+AGG | - | chr5_1:37671396-37671415 | None:intergenic | 50.0% | |
| GCTTCAACGAGTACGTCAAC+AGG | + | chr5_1:37671638-37671657 | Msa0729730:CDS | 50.0% | |
| GTTGATGCTCGTCAACCCAA+TGG | - | chr5_1:37671983-37672002 | None:intergenic | 50.0% | |
| TTTCAGTTAACGGCTCGAGG+TGG | - | chr5_1:37672507-37672526 | None:intergenic | 50.0% | |
| TCTTCAGCAGTCTACTCAGC+AGG | + | chr5_1:37672549-37672568 | Msa0729730:CDS | 50.0% | |
| GGATGCTTTATCTCACGGCA+TGG | + | chr5_1:37672576-37672595 | Msa0729730:CDS | 50.0% | |
| GAACCTGTACCGGATACTGA+GGG | - | chr5_1:37672643-37672662 | None:intergenic | 50.0% | |
| TCAGTATCCGGTACAGGTTC+CGG | + | chr5_1:37672643-37672662 | Msa0729730:CDS | 50.0% | |
| CCTTGTGAAGGAAATCCTCC+AGG | - | chr5_1:37672723-37672742 | None:intergenic | 50.0% | |
| CCTGGAGGATTTCCTTCACA+AGG | + | chr5_1:37672720-37672739 | Msa0729730:CDS | 50.0% | |
| AGGGAAGGTCATACTGGAGT+AGG | - | chr5_1:37672897-37672916 | None:intergenic | 50.0% | |
| CGAAGAAGGGAAGGTCATAC+TGG | - | chr5_1:37672903-37672922 | None:intergenic | 50.0% | |
| ACTACTTGGCGAAGAAGGGA+AGG | - | chr5_1:37672912-37672931 | None:intergenic | 50.0% | |
| ! | CAAATAGTGGGACCCCTTCC+CGG | + | chr5_1:37670473-37670492 | Msa0729730:intron | 55.0% |
| !! | AGCTTGGCCTTGTAAGCCGA+GGG | + | chr5_1:37670567-37670586 | Msa0729730:intron | 55.0% |
| CATCACTCCCTCGGCTTACA+AGG | - | chr5_1:37670577-37670596 | None:intergenic | 55.0% | |
| ! | CAGACTTGCTCAGAATCGCG+AGG | + | chr5_1:37671399-37671418 | Msa0729730:CDS | 55.0% |
| ACTTGCTCAGAATCGCGAGG+CGG | + | chr5_1:37671402-37671421 | Msa0729730:CDS | 55.0% | |
| GAAGAGCCGGTTACGGAAGA+AGG | + | chr5_1:37671429-37671448 | Msa0729730:CDS | 55.0% | |
| TCCTCCACACCCTCAGTATC+CGG | + | chr5_1:37672631-37672650 | Msa0729730:CDS | 55.0% | |
| TGTACCGGATACTGAGGGTG+TGG | - | chr5_1:37672638-37672657 | None:intergenic | 55.0% | |
| ACACCCTCAGTATCCGGTAC+AGG | + | chr5_1:37672637-37672656 | Msa0729730:CDS | 55.0% | |
| GGAACCTGTACCGGATACTG+AGG | - | chr5_1:37672644-37672663 | None:intergenic | 55.0% | |
| GAACAAGCTTGCACTCCTGG+AGG | + | chr5_1:37672705-37672724 | Msa0729730:CDS | 55.0% | |
| TGACGACACGTCAGACTGCA+AGG | + | chr5_1:37673041-37673060 | Msa0729730:CDS | 55.0% | |
| GACGACACGTCAGACTGCAA+GGG | + | chr5_1:37673042-37673061 | Msa0729730:CDS | 55.0% | |
| GTTATGGTTGGCACGCCCAA+GGG | + | chr5_1:37673114-37673133 | Msa0729730:CDS | 55.0% | |
| CGGGAAGGGGTCCCACTATT+TGG | - | chr5_1:37670475-37670494 | None:intergenic | 60.0% | |
| !! | GAGCTTGGCCTTGTAAGCCG+AGG | + | chr5_1:37670566-37670585 | Msa0729730:intron | 60.0% |
| ! | GTGCAGGGTGTTCGGATGCA+GGG | + | chr5_1:37670830-37670849 | Msa0729730:CDS | 60.0% |
| CGGCAAGGAAGAGCCGGTTA+CGG | + | chr5_1:37671422-37671441 | Msa0729730:CDS | 60.0% | |
| GCAGTCTACTCAGCAGGCTG+AGG | + | chr5_1:37672555-37672574 | Msa0729730:CDS | 60.0% | |
| ! | ACCGGATACTGAGGGTGTGG+AGG | - | chr5_1:37672635-37672654 | None:intergenic | 60.0% |
| CGTTATGGTTGGCACGCCCA+AGG | + | chr5_1:37673113-37673132 | Msa0729730:CDS | 60.0% | |
| AGGCGCTACAGGCGCTACCT+CGG | + | chr5_1:37670269-37670288 | Msa0729730:intron | 65.0% | |
| CATACGCAGGGTCCGGGAAG+GGG | - | chr5_1:37670488-37670507 | None:intergenic | 65.0% | |
| GCATACGCAGGGTCCGGGAA+GGG | - | chr5_1:37670489-37670508 | None:intergenic | 65.0% | |
| TGCATACGCAGGGTCCGGGA+AGG | - | chr5_1:37670490-37670509 | None:intergenic | 65.0% | |
| TTCCCGGACCCTGCGTATGC+AGG | + | chr5_1:37670489-37670508 | Msa0729730:intron | 65.0% | |
| CTCCTGCATACGCAGGGTCC+GGG | - | chr5_1:37670494-37670513 | None:intergenic | 65.0% | |
| GCTCCTGCATACGCAGGGTC+CGG | - | chr5_1:37670495-37670514 | None:intergenic | 65.0% | |
| ! | GGTGCAGGGTGTTCGGATGC+AGG | + | chr5_1:37670829-37670848 | Msa0729730:CDS | 65.0% |
| CTCAGAATCGCGAGGCGGCA+AGG | + | chr5_1:37671407-37671426 | Msa0729730:CDS | 65.0% | |
| GCGAGGCGGCAAGGAAGAGC+CGG | + | chr5_1:37671416-37671435 | Msa0729730:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 37669815 | 37673141 | 37669815 | ID=Msa0729730;Name=Msa0729730 |
| chr5_1 | mRNA | 37669815 | 37673141 | 37669815 | ID=Msa0729730-mRNA-1;Parent=Msa0729730;Name=Msa0729730-mRNA-1;_AED=0.11;_eAED=0.13;_QI=0|0|0|0.90|1|1|11|0|486 |
| chr5_1 | exon | 37669815 | 37669956 | 37669815 | ID=Msa0729730-mRNA-1:exon:11341;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37670047 | 37670126 | 37670047 | ID=Msa0729730-mRNA-1:exon:11342;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37670799 | 37671020 | 37670799 | ID=Msa0729730-mRNA-1:exon:11343;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37671248 | 37671307 | 37671248 | ID=Msa0729730-mRNA-1:exon:11344;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37671391 | 37671450 | 37671391 | ID=Msa0729730-mRNA-1:exon:11345;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37671582 | 37671659 | 37671582 | ID=Msa0729730-mRNA-1:exon:11346;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37671748 | 37671829 | 37671748 | ID=Msa0729730-mRNA-1:exon:11347;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37671952 | 37672223 | 37671952 | ID=Msa0729730-mRNA-1:exon:11348;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37672493 | 37672741 | 37672493 | ID=Msa0729730-mRNA-1:exon:11349;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37672834 | 37672902 | 37672834 | ID=Msa0729730-mRNA-1:exon:11350;Parent=Msa0729730-mRNA-1 |
| chr5_1 | exon | 37672995 | 37673141 | 37672995 | ID=Msa0729730-mRNA-1:exon:11351;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37669815 | 37669956 | 37669815 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37670047 | 37670126 | 37670047 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37670799 | 37671020 | 37670799 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37671248 | 37671307 | 37671248 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37671391 | 37671450 | 37671391 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37671582 | 37671659 | 37671582 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37671748 | 37671829 | 37671748 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37671952 | 37672223 | 37671952 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37672493 | 37672741 | 37672493 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37672834 | 37672902 | 37672834 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| chr5_1 | CDS | 37672995 | 37673141 | 37672995 | ID=Msa0729730-mRNA-1:cds;Parent=Msa0729730-mRNA-1 |
| Gene Sequence |
| Protein sequence |
