Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729870 | GAU44054.1 | 66.071 | 112 | 36 | 1 | 50 | 159 | 141 | 252 | 3.57e-42 | 151 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729870 | sp|Q9LVU8|RKD4_ARATH | 49.020 | 102 | 50 | 1 | 55 | 154 | 148 | 249 | 3.18e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729870 | A0A2Z6NHY1 | 66.071 | 112 | 36 | 1 | 50 | 159 | 141 | 252 | 1.70e-42 | 151 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0729870 | TF | RWP-RK |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729870 | MtrunA17_Chr3g0127001 | 49.246 | 199 | 59 | 7 | 1 | 158 | 62 | 259 | 3.11e-45 | 149 |
| Msa0729870 | MtrunA17_Chr1g0182631 | 54.110 | 146 | 51 | 3 | 22 | 158 | 94 | 232 | 6.18e-43 | 142 |
| Msa0729870 | MtrunA17_Chr4g0060761 | 41.727 | 139 | 62 | 3 | 36 | 155 | 128 | 266 | 1.49e-26 | 101 |
| Msa0729870 | MtrunA17_Chr3g0092141 | 39.200 | 125 | 68 | 2 | 39 | 155 | 43 | 167 | 6.01e-23 | 89.7 |
| Msa0729870 | MtrunA17_Chr5g0406901 | 30.357 | 112 | 65 | 1 | 55 | 153 | 201 | 312 | 5.58e-14 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729870 | AT5G53040.1 | 49.020 | 102 | 50 | 1 | 55 | 154 | 148 | 249 | 3.23e-26 | 100 |
| Msa0729870 | AT5G66990.1 | 43.243 | 111 | 50 | 2 | 60 | 157 | 164 | 274 | 1.92e-23 | 93.2 |
| Msa0729870 | AT1G18790.1 | 38.760 | 129 | 67 | 3 | 42 | 158 | 115 | 243 | 2.21e-21 | 87.8 |
| Msa0729870 | AT1G74480.1 | 40.404 | 99 | 49 | 1 | 60 | 148 | 140 | 238 | 1.22e-20 | 86.3 |
| Msa0729870 | AT4G35590.2 | 31.818 | 154 | 81 | 4 | 26 | 157 | 154 | 305 | 1.52e-14 | 69.7 |
| Msa0729870 | AT4G35590.1 | 31.818 | 154 | 81 | 4 | 26 | 157 | 204 | 355 | 1.53e-14 | 70.1 |
Find 36 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCACTCACTAACGACTTTA+AGG | 0.158687 | 5_1:+37849987 | Msa0729870:CDS |
| TAGTAAGCATTCAATCAAAA+TGG | 0.250651 | 5_1:-37852023 | None:intergenic |
| GTTTGTTTGATACAGGAATT+AGG | 0.292311 | 5_1:+37851797 | Msa0729870:intron |
| CAACCCAACATTCATATTCT+TGG | 0.318517 | 5_1:-37849893 | None:intergenic |
| TAAAGCTAGTAATTGTATAT+TGG | 0.325121 | 5_1:-37851997 | None:intergenic |
| TTCAAAATTTCAGCAAGGTC+TGG | 0.346715 | 5_1:-37849668 | None:intergenic |
| TCAAAATTTCAGCAAGGTCT+GGG | 0.363559 | 5_1:-37849667 | None:intergenic |
| TTCACCTCATTCTTACTTGT+AGG | 0.370737 | 5_1:-37849737 | None:intergenic |
| TTTGATACAGGAATTAGGTT+TGG | 0.375313 | 5_1:+37851802 | Msa0729870:intron |
| ATTTCATCAAATTGCAAAGA+TGG | 0.381575 | 5_1:-37849835 | None:intergenic |
| AAGATGTTGGAGGAATTTCC+TGG | 0.402215 | 5_1:+37851857 | Msa0729870:CDS |
| AGTAAGCATTCAATCAAAAT+GGG | 0.440701 | 5_1:-37852022 | None:intergenic |
| GGTTGACCCTTCTGAGGAAA+AGG | 0.463392 | 5_1:+37849911 | Msa0729870:CDS |
| AGAAAGACTTTAGAAAATGA+TGG | 0.476380 | 5_1:-37851974 | None:intergenic |
| TTCTTGGCAGCAGTCGTTTG+AGG | 0.479458 | 5_1:-37849877 | None:intergenic |
| TATTACTTTCAAAGCTGAGC+AGG | 0.484600 | 5_1:+37852052 | Msa0729870:three_prime_UTR |
| CTGCCAAGAATATGAATGTT+GGG | 0.520209 | 5_1:+37849890 | Msa0729870:CDS |
| ACGATGAGTTCGAGAAACTA+AGG | 0.525507 | 5_1:+37851891 | Msa0729870:CDS |
| GTTGGAGGAATTTCCTGGGA+TGG | 0.536922 | 5_1:+37851862 | Msa0729870:CDS |
| TGAGGTGAAGAAAGAAGAAG+CGG | 0.546055 | 5_1:+37849751 | Msa0729870:CDS |
| TCATCGTTCAATTCCATCCC+AGG | 0.546218 | 5_1:-37851875 | None:intergenic |
| GTGAAGAAGTTCAACGATGG+AGG | 0.550347 | 5_1:-37851952 | None:intergenic |
| AGATGTTGGAGGAATTTCCT+GGG | 0.563265 | 5_1:+37851858 | Msa0729870:CDS |
| AGATAAGGTCAAGAAAGAAG+AGG | 0.571612 | 5_1:+37849694 | Msa0729870:CDS |
| CCTACTAGGTTTAGGAGAAG+AGG | 0.583854 | 5_1:+37849809 | Msa0729870:intron |
| GCTGCCAAGAATATGAATGT+TGG | 0.589287 | 5_1:+37849889 | Msa0729870:CDS |
| CAAAATTTCAGCAAGGTCTG+GGG | 0.605456 | 5_1:-37849666 | None:intergenic |
| CTATCTTCAAAATTTCAGCA+AGG | 0.613232 | 5_1:-37849673 | None:intergenic |
| TGAAGAAGTTCAACGATGGA+GGG | 0.613260 | 5_1:-37851951 | None:intergenic |
| CCTTCTGAGGAAAAGGTGCA+AGG | 0.636321 | 5_1:+37849918 | Msa0729870:CDS |
| AATTTCAGCAAGGTCTGGGG+TGG | 0.653378 | 5_1:-37849663 | None:intergenic |
| ACAAAGCAAGTATTTCAACA+TGG | 0.656477 | 5_1:-37852109 | None:intergenic |
| AGGAGCTCAACATAACAAAG+TGG | 0.671977 | 5_1:+37849938 | Msa0729870:CDS |
| ATGTTGGGTTGACCCTTCTG+AGG | 0.676250 | 5_1:+37849905 | Msa0729870:CDS |
| ATGGTGAAGAAGTTCAACGA+TGG | 0.684820 | 5_1:-37851955 | None:intergenic |
| GTTGCCTACAAGTAAGAATG+AGG | 0.686186 | 5_1:+37849733 | Msa0729870:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAATAATAATAATAATT+CGG | - | chr5_1:37850385-37850404 | None:intergenic | 0.0% |
| !! | ATAAATAATCAAACAACATA+AGG | - | chr5_1:37850018-37850037 | None:intergenic | 15.0% |
| !! | ATAATAATAATAATTCGGTT+TGG | - | chr5_1:37850380-37850399 | None:intergenic | 15.0% |
| !! | ACTAGAAAAAACTAATAATA+TGG | - | chr5_1:37850442-37850461 | None:intergenic | 15.0% |
| !!! | ACAAAAACAATTGATAATAA+CGG | + | chr5_1:37850715-37850734 | Msa0729870:intron | 15.0% |
| !!! | TTTCTTTTTTTTTTTTCATC+TGG | - | chr5_1:37851185-37851204 | None:intergenic | 15.0% |
| !!! | ATTGAGAGTATTTTTTAATT+CGG | - | chr5_1:37851272-37851291 | None:intergenic | 15.0% |
| !! | ATTAAAAAATACTCTCAATT+AGG | + | chr5_1:37851273-37851292 | Msa0729870:intron | 15.0% |
| !! | TTAAAAAATACTCTCAATTA+GGG | + | chr5_1:37851274-37851293 | Msa0729870:intron | 15.0% |
| !! | TATATAAACCCTTATAAATT+TGG | - | chr5_1:37851525-37851544 | None:intergenic | 15.0% |
| !! | GTTTATATAAGAAATTCATA+AGG | + | chr5_1:37851536-37851555 | Msa0729870:intron | 15.0% |
| !! | ATTTAATCTTAAATGATCAA+TGG | + | chr5_1:37851757-37851776 | Msa0729870:intron | 15.0% |
| !!! | TGAAATTTTGAAGATAGATA+AGG | + | chr5_1:37849679-37849698 | Msa0729870:CDS | 20.0% |
| !!! | AAGCTCTTAAATTTTCTATA+AGG | - | chr5_1:37849964-37849983 | None:intergenic | 20.0% |
| !! | TCAATTCACAACAAAAAATA+TGG | - | chr5_1:37850080-37850099 | None:intergenic | 20.0% |
| !!! | TAAATTTTACGGGTTAATAT+GGG | + | chr5_1:37850306-37850325 | Msa0729870:intron | 20.0% |
| !!! | GTAGTATTAAGTAGTATTTT+GGG | - | chr5_1:37850563-37850582 | None:intergenic | 20.0% |
| !!! | AGTAGTATTAAGTAGTATTT+TGG | - | chr5_1:37850564-37850583 | None:intergenic | 20.0% |
| !!! | CAAAAACAATTGATAATAAC+GGG | + | chr5_1:37850716-37850735 | Msa0729870:intron | 20.0% |
| !! | CAAAATCAGTACTATTATAT+AGG | - | chr5_1:37850925-37850944 | None:intergenic | 20.0% |
| !!! | TTTTAAGAATGACAAAGAAT+TGG | - | chr5_1:37851078-37851097 | None:intergenic | 20.0% |
| !!! | TTGAGAGTATTTTTTAATTC+GGG | - | chr5_1:37851271-37851290 | None:intergenic | 20.0% |
| !! | AAAATTTGCAACACATTTAT+AGG | + | chr5_1:37851448-37851467 | Msa0729870:intron | 20.0% |
| !! | AAATTTGCAACACATTTATA+GGG | + | chr5_1:37851449-37851468 | Msa0729870:intron | 20.0% |
| !! | AAGAAATTGCCAAATTTATA+AGG | + | chr5_1:37851513-37851532 | Msa0729870:intron | 20.0% |
| !! | AGAAATTGCCAAATTTATAA+GGG | + | chr5_1:37851514-37851533 | Msa0729870:intron | 20.0% |
| !! | TAAAGCTAGTAATTGTATAT+TGG | - | chr5_1:37852000-37852019 | None:intergenic | 20.0% |
| ! | ATTTCATCAAATTGCAAAGA+TGG | - | chr5_1:37849838-37849857 | None:intergenic | 25.0% |
| ! | TTCACGTGCTTAAAAATATT+AGG | - | chr5_1:37850045-37850064 | None:intergenic | 25.0% |
| ! | TGTTGTGAATTGAACAATTT+AGG | + | chr5_1:37850087-37850106 | Msa0729870:intron | 25.0% |
| !! | ATGCCTTAATTGTTTTCAAT+TGG | + | chr5_1:37850162-37850181 | Msa0729870:intron | 25.0% |
| !!! | GTAAATTTTACGGGTTAATA+TGG | + | chr5_1:37850305-37850324 | Msa0729870:intron | 25.0% |
| !!! | TAATAATAATTCGGTTTGGT+CGG | - | chr5_1:37850376-37850395 | None:intergenic | 25.0% |
| ! | TATTAAGCCCAAAACAAAAT+AGG | + | chr5_1:37850501-37850520 | Msa0729870:intron | 25.0% |
| !!! | AAAACAGCCTATTTTGTTTT+GGG | - | chr5_1:37850511-37850530 | None:intergenic | 25.0% |
| !!! | AAAAACAGCCTATTTTGTTT+TGG | - | chr5_1:37850512-37850531 | None:intergenic | 25.0% |
| ! | ATGTGATTATAATTCTCCAA+TGG | + | chr5_1:37850647-37850666 | Msa0729870:intron | 25.0% |
| !!! | ATATAAAGATTTGCTAGGTT+GGG | - | chr5_1:37850870-37850889 | None:intergenic | 25.0% |
| !! | TGATGATATAAAGATTTGCT+AGG | - | chr5_1:37850875-37850894 | None:intergenic | 25.0% |
| ! | AATTTGCAACACATTTATAG+GGG | + | chr5_1:37851450-37851469 | Msa0729870:intron | 25.0% |
| ! | AAATTACAAAAAATTTGGGC+TGG | + | chr5_1:37851570-37851589 | Msa0729870:intron | 25.0% |
| !! | ATCAATGGTTTCAAAGTATT+TGG | + | chr5_1:37851772-37851791 | Msa0729870:intron | 25.0% |
| !! | AGAAAGACTTTAGAAAATGA+TGG | - | chr5_1:37851977-37851996 | None:intergenic | 25.0% |
| ! | AGTAAGCATTCAATCAAAAT+GGG | - | chr5_1:37852025-37852044 | None:intergenic | 25.0% |
| ! | TAGTAAGCATTCAATCAAAA+TGG | - | chr5_1:37852026-37852045 | None:intergenic | 25.0% |
| CTATCTTCAAAATTTCAGCA+AGG | - | chr5_1:37849676-37849695 | None:intergenic | 30.0% | |
| TAATATGGGTATATTCGGTT+CGG | + | chr5_1:37850320-37850339 | Msa0729870:intron | 30.0% | |
| !! | AATAATAATTCGGTTTGGTC+GGG | - | chr5_1:37850375-37850394 | None:intergenic | 30.0% |
| !!! | AAATAGGCTGTTTTTTTACC+CGG | + | chr5_1:37850517-37850536 | Msa0729870:intron | 30.0% |
| ! | AACAATTGATAATAACGGGA+AGG | + | chr5_1:37850720-37850739 | Msa0729870:intron | 30.0% |
| !! | GATATAAAGATTTGCTAGGT+TGG | - | chr5_1:37850871-37850890 | None:intergenic | 30.0% |
| ATCAGTACTATTATATAGGC+TGG | - | chr5_1:37850921-37850940 | None:intergenic | 30.0% | |
| TGACAAAGAATTGGAAGATA+TGG | - | chr5_1:37851069-37851088 | None:intergenic | 30.0% | |
| !!! | ATTTTTTAATTCGGGTTTCC+CGG | - | chr5_1:37851263-37851282 | None:intergenic | 30.0% |
| CCAGGATTATTATAAAGTCT+GGG | + | chr5_1:37851421-37851440 | Msa0729870:intron | 30.0% | |
| CTTCAAAGAAAAAATGAGCT+AGG | - | chr5_1:37851653-37851672 | None:intergenic | 30.0% | |
| !!! | TTCTGTAGCATTTTGAGTTA+TGG | + | chr5_1:37851692-37851711 | Msa0729870:intron | 30.0% |
| !!! | TAGCATTTTGAGTTATGGAA+TGG | + | chr5_1:37851697-37851716 | Msa0729870:intron | 30.0% |
| CCTACTAATAGTCTTTAATC+TGG | - | chr5_1:37851726-37851745 | None:intergenic | 30.0% | |
| CCAGATTAAAGACTATTAGT+AGG | + | chr5_1:37851723-37851742 | Msa0729870:intron | 30.0% | |
| TTTGGTTGTTTGTTTGATAC+AGG | + | chr5_1:37851790-37851809 | Msa0729870:intron | 30.0% | |
| GTTTGTTTGATACAGGAATT+AGG | + | chr5_1:37851797-37851816 | Msa0729870:intron | 30.0% | |
| TTTGATACAGGAATTAGGTT+TGG | + | chr5_1:37851802-37851821 | Msa0729870:intron | 30.0% | |
| ACAAAGCAAGTATTTCAACA+TGG | - | chr5_1:37852112-37852131 | None:intergenic | 30.0% | |
| TCAAAATTTCAGCAAGGTCT+GGG | - | chr5_1:37849670-37849689 | None:intergenic | 35.0% | |
| TTCAAAATTTCAGCAAGGTC+TGG | - | chr5_1:37849671-37849690 | None:intergenic | 35.0% | |
| AGATAAGGTCAAGAAAGAAG+AGG | + | chr5_1:37849694-37849713 | Msa0729870:CDS | 35.0% | |
| TTCACCTCATTCTTACTTGT+AGG | - | chr5_1:37849740-37849759 | None:intergenic | 35.0% | |
| CTGCCAAGAATATGAATGTT+GGG | + | chr5_1:37849890-37849909 | Msa0729870:CDS | 35.0% | |
| CAACCCAACATTCATATTCT+TGG | - | chr5_1:37849896-37849915 | None:intergenic | 35.0% | |
| GCGCCAATTGAAAACAATTA+AGG | - | chr5_1:37850168-37850187 | None:intergenic | 35.0% | |
| CGAATGTGTAAATTAGGGTT+GGG | - | chr5_1:37850253-37850272 | None:intergenic | 35.0% | |
| CCAACCCTAATTTACACATT+CGG | + | chr5_1:37850251-37850270 | Msa0729870:intron | 35.0% | |
| CGAACCGAATGTGTAAATTA+GGG | - | chr5_1:37850258-37850277 | None:intergenic | 35.0% | |
| CCTAATTTACACATTCGGTT+CGG | + | chr5_1:37850256-37850275 | Msa0729870:intron | 35.0% | |
| CTAATTTACACATTCGGTTC+GGG | + | chr5_1:37850257-37850276 | Msa0729870:intron | 35.0% | |
| ! | GGTTCTACGGGTAAATTTTA+CGG | + | chr5_1:37850295-37850314 | Msa0729870:intron | 35.0% |
| ! | GTTCTACGGGTAAATTTTAC+GGG | + | chr5_1:37850296-37850315 | Msa0729870:intron | 35.0% |
| CGGGTTAATATGGGTATATT+CGG | + | chr5_1:37850315-37850334 | Msa0729870:intron | 35.0% | |
| GGGCTTAATAAGAAACAAGT+TGG | - | chr5_1:37850491-37850510 | None:intergenic | 35.0% | |
| CGTGAATAGCATTTAACCAT+TGG | - | chr5_1:37850666-37850685 | None:intergenic | 35.0% | |
| CGACATAGACATGATACTTT+AGG | + | chr5_1:37850684-37850703 | Msa0729870:intron | 35.0% | |
| ACATGATACTTTAGGCTTGA+GGG | + | chr5_1:37850692-37850711 | Msa0729870:intron | 35.0% | |
| ! | AATTGATAATAACGGGAAGG+TGG | + | chr5_1:37850723-37850742 | Msa0729870:intron | 35.0% |
| ! | ATTGATAATAACGGGAAGGT+GGG | + | chr5_1:37850724-37850743 | Msa0729870:intron | 35.0% |
| TACTATTATATAGGCTGGTG+TGG | - | chr5_1:37850916-37850935 | None:intergenic | 35.0% | |
| GATCCATGTCTTCTATTAAC+AGG | + | chr5_1:37851001-37851020 | Msa0729870:intron | 35.0% | |
| TTGCCTGTTAATAGAAGACA+TGG | - | chr5_1:37851007-37851026 | None:intergenic | 35.0% | |
| AAATCTGTTCACTTGACTCA+TGG | + | chr5_1:37851025-37851044 | Msa0729870:intron | 35.0% | |
| !!! | TTTTTTAATTCGGGTTTCCC+GGG | - | chr5_1:37851262-37851281 | None:intergenic | 35.0% |
| GCCAGGATTATTATAAAGTC+TGG | + | chr5_1:37851420-37851439 | Msa0729870:intron | 35.0% | |
| CCCAGACTTTATAATAATCC+TGG | - | chr5_1:37851424-37851443 | None:intergenic | 35.0% | |
| GGAATTAGGTTTGGAAAAAG+AGG | + | chr5_1:37851811-37851830 | Msa0729870:intron | 35.0% | |
| TATTACTTTCAAAGCTGAGC+AGG | + | chr5_1:37852052-37852071 | Msa0729870:three_prime_UTR | 35.0% | |
| TGAGCAGGCAAAAAAGATTA+AGG | + | chr5_1:37852067-37852086 | Msa0729870:three_prime_UTR | 35.0% | |
| CAGGCAAAAAAGATTAAGGT+TGG | + | chr5_1:37852071-37852090 | Msa0729870:three_prime_UTR | 35.0% | |
| CAAAATTTCAGCAAGGTCTG+GGG | - | chr5_1:37849669-37849688 | None:intergenic | 40.0% | |
| GTTGCCTACAAGTAAGAATG+AGG | + | chr5_1:37849733-37849752 | Msa0729870:CDS | 40.0% | |
| TGAGGTGAAGAAAGAAGAAG+CGG | + | chr5_1:37849751-37849770 | Msa0729870:CDS | 40.0% | |
| GCTGCCAAGAATATGAATGT+TGG | + | chr5_1:37849889-37849908 | Msa0729870:CDS | 40.0% | |
| AGGAGCTCAACATAACAAAG+TGG | + | chr5_1:37849938-37849957 | Msa0729870:CDS | 40.0% | |
| GTCACTCACTAACGACTTTA+AGG | + | chr5_1:37849987-37850006 | Msa0729870:CDS | 40.0% | |
| ATCTTGTACCAGTGTCTAGT+AGG | + | chr5_1:37850188-37850207 | Msa0729870:intron | 40.0% | |
| TCTTGTACCAGTGTCTAGTA+GGG | + | chr5_1:37850189-37850208 | Msa0729870:intron | 40.0% | |
| TAAATTAGGGTTGGGTTCGT+CGG | - | chr5_1:37850245-37850264 | None:intergenic | 40.0% | |
| CCGAATGTGTAAATTAGGGT+TGG | - | chr5_1:37850254-37850273 | None:intergenic | 40.0% | |
| CCGAACCGAATGTGTAAATT+AGG | - | chr5_1:37850259-37850278 | None:intergenic | 40.0% | |
| !! | ACATTCGGTTCGGGTTAAAA+CGG | + | chr5_1:37850266-37850285 | Msa0729870:intron | 40.0% |
| !!! | TCGGTTCGGTTTGATGTTTT+AGG | + | chr5_1:37850339-37850358 | Msa0729870:intron | 40.0% |
| !! | TATTTTGGGCTGTGAGAGAT+TGG | - | chr5_1:37850549-37850568 | None:intergenic | 40.0% |
| GACATGATACTTTAGGCTTG+AGG | + | chr5_1:37850691-37850710 | Msa0729870:intron | 40.0% | |
| ! | TGCGTTTTGTACTTGTGAGT+TGG | + | chr5_1:37850943-37850962 | Msa0729870:intron | 40.0% |
| !!! | GTTAATCGGTTCGGTTTTAC+GGG | - | chr5_1:37851219-37851238 | None:intergenic | 40.0% |
| !!! | GGTTAATCGGTTCGGTTTTA+CGG | - | chr5_1:37851220-37851239 | None:intergenic | 40.0% |
| TAAAACCGAACCGATTAACC+CGG | + | chr5_1:37851220-37851239 | Msa0729870:intron | 40.0% | |
| GGTCTATACATATAACCCGT+CGG | + | chr5_1:37851295-37851314 | Msa0729870:intron | 40.0% | |
| ! | ATACATATAACCCGTCGGTT+TGG | + | chr5_1:37851300-37851319 | Msa0729870:intron | 40.0% |
| CAAGCAAGTACTAGACACTA+GGG | - | chr5_1:37851377-37851396 | None:intergenic | 40.0% | |
| GGAGAAGCAGAAAAAGATGT+TGG | + | chr5_1:37851844-37851863 | Msa0729870:CDS | 40.0% | |
| GAAGCAGAAAAAGATGTTGG+AGG | + | chr5_1:37851847-37851866 | Msa0729870:CDS | 40.0% | |
| AAGATGTTGGAGGAATTTCC+TGG | + | chr5_1:37851857-37851876 | Msa0729870:CDS | 40.0% | |
| AGATGTTGGAGGAATTTCCT+GGG | + | chr5_1:37851858-37851877 | Msa0729870:CDS | 40.0% | |
| ACGATGAGTTCGAGAAACTA+AGG | + | chr5_1:37851891-37851910 | Msa0729870:CDS | 40.0% | |
| TGAAGAAGTTCAACGATGGA+GGG | - | chr5_1:37851954-37851973 | None:intergenic | 40.0% | |
| ATGGTGAAGAAGTTCAACGA+TGG | - | chr5_1:37851958-37851977 | None:intergenic | 40.0% | |
| CATCAACATTGCCTCCTACT+AGG | + | chr5_1:37849795-37849814 | Msa0729870:intron | 45.0% | |
| CATTGCCTCCTACTAGGTTT+AGG | + | chr5_1:37849801-37849820 | Msa0729870:intron | 45.0% | |
| CTTCTCCTAAACCTAGTAGG+AGG | - | chr5_1:37849809-37849828 | None:intergenic | 45.0% | |
| CCTCTTCTCCTAAACCTAGT+AGG | - | chr5_1:37849812-37849831 | None:intergenic | 45.0% | |
| CCTACTAGGTTTAGGAGAAG+AGG | + | chr5_1:37849809-37849828 | Msa0729870:intron | 45.0% | |
| ! | CTTGCACCTTTTCCTCAGAA+GGG | - | chr5_1:37849920-37849939 | None:intergenic | 45.0% |
| TTGGGTTCGTCGGGTAAATT+CGG | - | chr5_1:37850235-37850254 | None:intergenic | 45.0% | |
| AAATTAGGGTTGGGTTCGTC+GGG | - | chr5_1:37850244-37850263 | None:intergenic | 45.0% | |
| !! | CATTCGGTTCGGGTTAAAAC+GGG | + | chr5_1:37850267-37850286 | Msa0729870:intron | 45.0% |
| !! | GTTCGGGTTAAAACGGGTTA+CGG | + | chr5_1:37850273-37850292 | Msa0729870:intron | 45.0% |
| !! | TTCGGGTTAAAACGGGTTAC+GGG | + | chr5_1:37850274-37850293 | Msa0729870:intron | 45.0% |
| !! | AAAACGGGTTACGGGTTCTA+CGG | + | chr5_1:37850282-37850301 | Msa0729870:intron | 45.0% |
| !! | TGGGTATATTCGGTTCGGTT+CGG | + | chr5_1:37850325-37850344 | Msa0729870:intron | 45.0% |
| !! | GTTTGATGTTTTAGGCCCGT+CGG | + | chr5_1:37850347-37850366 | Msa0729870:intron | 45.0% |
| TTGGGTGAAGAAGGAGAAGA+AGG | - | chr5_1:37850852-37850871 | None:intergenic | 45.0% | |
| ! | TTTGCTAGGTTGGGTGAAGA+AGG | - | chr5_1:37850861-37850880 | None:intergenic | 45.0% |
| !! | ATATAACCCGTCGGTTTGGT+CGG | + | chr5_1:37851304-37851323 | Msa0729870:intron | 45.0% |
| AAGTACTAGACACTAGGGCT+GGG | - | chr5_1:37851372-37851391 | None:intergenic | 45.0% | |
| CCAAGCAAGTACTAGACACT+AGG | - | chr5_1:37851378-37851397 | None:intergenic | 45.0% | |
| CCTAGTGTCTAGTACTTGCT+TGG | + | chr5_1:37851375-37851394 | Msa0729870:intron | 45.0% | |
| ! | AAAAAATTTGGGCTGGAGCC+CGG | + | chr5_1:37851577-37851596 | Msa0729870:intron | 45.0% |
| GGAAAAAGAGGTTGCTACGT+TGG | + | chr5_1:37851823-37851842 | Msa0729870:CDS | 45.0% | |
| TCATCGTTCAATTCCATCCC+AGG | - | chr5_1:37851878-37851897 | None:intergenic | 45.0% | |
| GTGAAGAAGTTCAACGATGG+AGG | - | chr5_1:37851955-37851974 | None:intergenic | 45.0% | |
| !! | ATAAAAAATTACAAAAAATT+TGG | + | chr5_1:37851565-37851584 | Msa0729870:intron | 5.0% |
| !! | TAAAAAATTACAAAAAATTT+GGG | + | chr5_1:37851566-37851585 | Msa0729870:intron | 5.0% |
| AATTTCAGCAAGGTCTGGGG+TGG | - | chr5_1:37849666-37849685 | None:intergenic | 50.0% | |
| TTCTTGGCAGCAGTCGTTTG+AGG | - | chr5_1:37849880-37849899 | None:intergenic | 50.0% | |
| !! | ATGTTGGGTTGACCCTTCTG+AGG | + | chr5_1:37849905-37849924 | Msa0729870:CDS | 50.0% |
| ! | GGTTGACCCTTCTGAGGAAA+AGG | + | chr5_1:37849911-37849930 | Msa0729870:CDS | 50.0% |
| ! | CCTTGCACCTTTTCCTCAGA+AGG | - | chr5_1:37849921-37849940 | None:intergenic | 50.0% |
| ! | CCTTCTGAGGAAAAGGTGCA+AGG | + | chr5_1:37849918-37849937 | Msa0729870:CDS | 50.0% |
| TACCAGTGTCTAGTAGGGCT+GGG | + | chr5_1:37850194-37850213 | Msa0729870:intron | 50.0% | |
| CTAGTAGGGCTGGGCAAATA+CGG | + | chr5_1:37850203-37850222 | Msa0729870:intron | 50.0% | |
| TAGTAGGGCTGGGCAAATAC+GGG | + | chr5_1:37850204-37850223 | Msa0729870:intron | 50.0% | |
| TGGGTTCGTCGGGTAAATTC+GGG | - | chr5_1:37850234-37850253 | None:intergenic | 50.0% | |
| !! | AAACGGGTTACGGGTTCTAC+GGG | + | chr5_1:37850283-37850302 | Msa0729870:intron | 50.0% |
| !! | TGTGAGAGATTGGTTTGGGC+CGG | - | chr5_1:37850539-37850558 | None:intergenic | 50.0% |
| !! | GGGCTGTGAGAGATTGGTTT+GGG | - | chr5_1:37850543-37850562 | None:intergenic | 50.0% |
| ! | TGGGCTGTGAGAGATTGGTT+TGG | - | chr5_1:37850544-37850563 | None:intergenic | 50.0% |
| ACCATTGCAGCAGGTTTGGA+TGG | - | chr5_1:37850789-37850808 | None:intergenic | 50.0% | |
| TCCAAACCTGCTGCAATGGT+AGG | + | chr5_1:37850789-37850808 | Msa0729870:intron | 50.0% | |
| ACCTACCATTGCAGCAGGTT+TGG | - | chr5_1:37850793-37850812 | None:intergenic | 50.0% | |
| AACAGACCTACCATTGCAGC+AGG | - | chr5_1:37850798-37850817 | None:intergenic | 50.0% | |
| GAAGGAGAAGAAGGAACAGC+TGG | - | chr5_1:37850843-37850862 | None:intergenic | 50.0% | |
| TCATTCGGGTCCGGGTTAAT+CGG | - | chr5_1:37851233-37851252 | None:intergenic | 50.0% | |
| ! | TTTCCCGGGTTCGGTTCATT+CGG | - | chr5_1:37851248-37851267 | None:intergenic | 50.0% |
| ! | TAATTCGGGTTTCCCGGGTT+CGG | - | chr5_1:37851257-37851276 | None:intergenic | 50.0% |
| CAAGTACTAGACACTAGGGC+TGG | - | chr5_1:37851373-37851392 | None:intergenic | 50.0% | |
| !! | CTTGGTAGCGACTCTTGCAA+TGG | + | chr5_1:37851393-37851412 | Msa0729870:intron | 50.0% |
| ! | AAAAATTTGGGCTGGAGCCC+GGG | + | chr5_1:37851578-37851597 | Msa0729870:intron | 50.0% |
| TGAGCCTAGGAGCAGTTCAA+AGG | - | chr5_1:37851625-37851644 | None:intergenic | 50.0% | |
| GTTGGAGGAATTTCCTGGGA+TGG | + | chr5_1:37851862-37851881 | Msa0729870:CDS | 50.0% | |
| GTACCAGTGTCTAGTAGGGC+TGG | + | chr5_1:37850193-37850212 | Msa0729870:intron | 55.0% | |
| !! | GTGAGAGATTGGTTTGGGCC+GGG | - | chr5_1:37850538-37850557 | None:intergenic | 55.0% |
| GCCATCCAAACCTGCTGCAA+TGG | + | chr5_1:37850785-37850804 | Msa0729870:intron | 55.0% | |
| ! | TTCCCGGGTTCGGTTCATTC+GGG | - | chr5_1:37851247-37851266 | None:intergenic | 55.0% |
| !! | GTTTGGTCGGTTTGGGGGTT+TGG | + | chr5_1:37851317-37851336 | Msa0729870:intron | 55.0% |
| TAGACACTAGGGCTGGGCAT+CGG | - | chr5_1:37851366-37851385 | None:intergenic | 55.0% | |
| GGTAGCGACTCTTGCAATGG+TGG | + | chr5_1:37851396-37851415 | Msa0729870:intron | 55.0% | |
| ! | ACTCTTGCAATGGTGGAGCC+AGG | + | chr5_1:37851403-37851422 | Msa0729870:intron | 55.0% |
| TTCAAAGGCCCAACGAGCCT+GGG | - | chr5_1:37851610-37851629 | None:intergenic | 55.0% | |
| TGGGCCTTTGAACTGCTCCT+AGG | + | chr5_1:37851618-37851637 | Msa0729870:intron | 55.0% | |
| GAGCTAGGATGCATGAGCCT+AGG | - | chr5_1:37851638-37851657 | None:intergenic | 55.0% | |
| TGCCCAGCCCTACTAGACAC+TGG | - | chr5_1:37850199-37850218 | None:intergenic | 60.0% | |
| !! | TCGGTTTGGTCGGGTTCCGA+CGG | - | chr5_1:37850366-37850385 | None:intergenic | 60.0% |
| CGGGTCCGGGTTAATCGGTT+CGG | - | chr5_1:37851228-37851247 | None:intergenic | 60.0% | |
| ! | GGTTCGGTTCATTCGGGTCC+GGG | - | chr5_1:37851241-37851260 | None:intergenic | 60.0% |
| ! | GGGTTCGGTTCATTCGGGTC+CGG | - | chr5_1:37851242-37851261 | None:intergenic | 60.0% |
| GGACCCGAATGAACCGAACC+CGG | + | chr5_1:37851241-37851260 | Msa0729870:intron | 60.0% | |
| GACCCGAATGAACCGAACCC+GGG | + | chr5_1:37851242-37851261 | Msa0729870:intron | 60.0% | |
| !! | ACCCGTCGGTTTGGTCGGTT+TGG | + | chr5_1:37851309-37851328 | Msa0729870:intron | 60.0% |
| CCCAAACCGACCAAACCGAC+GGG | - | chr5_1:37851313-37851332 | None:intergenic | 60.0% | |
| !! | CCCGTCGGTTTGGTCGGTTT+GGG | + | chr5_1:37851310-37851329 | Msa0729870:intron | 60.0% |
| CCCCAAACCGACCAAACCGA+CGG | - | chr5_1:37851314-37851333 | None:intergenic | 60.0% | |
| !! | CCGTCGGTTTGGTCGGTTTG+GGG | + | chr5_1:37851311-37851330 | Msa0729870:intron | 60.0% |
| !! | CGTCGGTTTGGTCGGTTTGG+GGG | + | chr5_1:37851312-37851331 | Msa0729870:intron | 60.0% |
| !! | GTTCGGTTCGGTTCGGGTTC+GGG | - | chr5_1:37851344-37851363 | None:intergenic | 60.0% |
| !! | GGTTCGGTTCGGTTCGGGTT+CGG | - | chr5_1:37851345-37851364 | None:intergenic | 60.0% |
| !! | GCATCGGTTCGGTTCGGTTC+GGG | - | chr5_1:37851350-37851369 | None:intergenic | 60.0% |
| !! | GGCATCGGTTCGGTTCGGTT+CGG | - | chr5_1:37851351-37851370 | None:intergenic | 60.0% |
| !! | ACTAGGGCTGGGCATCGGTT+CGG | - | chr5_1:37851361-37851380 | None:intergenic | 60.0% |
| GTTCAAAGGCCCAACGAGCC+TGG | - | chr5_1:37851611-37851630 | None:intergenic | 60.0% | |
| !! | CGGTTTGGTCGGGTTCCGAC+GGG | - | chr5_1:37850365-37850384 | None:intergenic | 65.0% |
| !! | GGCTGGGCATCGGTTCGGTT+CGG | - | chr5_1:37851356-37851375 | None:intergenic | 65.0% |
| AACGAGCCTGGGCAGTTGCC+CGG | - | chr5_1:37851599-37851618 | None:intergenic | 65.0% | |
| GGCAACTGCCCAGGCTCGTT+GGG | + | chr5_1:37851599-37851618 | Msa0729870:intron | 65.0% | |
| ACGAGCCTGGGCAGTTGCCC+GGG | - | chr5_1:37851598-37851617 | None:intergenic | 70.0% | |
| GGGCAACTGCCCAGGCTCGT+TGG | + | chr5_1:37851598-37851617 | Msa0729870:intron | 70.0% | |
| TGGAGCCCGGGCAACTGCCC+AGG | + | chr5_1:37851590-37851609 | Msa0729870:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 37849638 | 37852161 | 37849638 | ID=Msa0729870;Name=Msa0729870 |
| chr5_1 | mRNA | 37849638 | 37852161 | 37849638 | ID=Msa0729870-mRNA-1;Parent=Msa0729870;Name=Msa0729870-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.5|0.33|1|0.5|0.66|3|197|160 |
| chr5_1 | exon | 37849638 | 37849781 | 37849638 | ID=Msa0729870-mRNA-1:exon:11379;Parent=Msa0729870-mRNA-1 |
| chr5_1 | exon | 37849823 | 37850008 | 37849823 | ID=Msa0729870-mRNA-1:exon:11380;Parent=Msa0729870-mRNA-1 |
| chr5_1 | exon | 37851812 | 37852161 | 37851812 | ID=Msa0729870-mRNA-1:exon:11381;Parent=Msa0729870-mRNA-1 |
| chr5_1 | CDS | 37849638 | 37849781 | 37849638 | ID=Msa0729870-mRNA-1:cds;Parent=Msa0729870-mRNA-1 |
| chr5_1 | CDS | 37849823 | 37850008 | 37849823 | ID=Msa0729870-mRNA-1:cds;Parent=Msa0729870-mRNA-1 |
| chr5_1 | CDS | 37851812 | 37851964 | 37851812 | ID=Msa0729870-mRNA-1:cds;Parent=Msa0729870-mRNA-1 |
| chr5_1 | three_prime_UTR | 37851965 | 37852161 | 37851965 | ID=Msa0729870-mRNA-1:three_prime_utr;Parent=Msa0729870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
