Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729980 | XP_039689000.1 | 82.199 | 382 | 31 | 2 | 131 | 475 | 401 | 782 | 0.0 | 637 |
| Msa0729980 | XP_039689000.1 | 87.786 | 131 | 16 | 0 | 1 | 131 | 74 | 204 | 3.13e-68 | 244 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729980 | sp|Q9SZL8|FRS5_ARATH | 33.333 | 219 | 141 | 4 | 131 | 348 | 384 | 598 | 1.03e-31 | 133 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729980 | A0A2K3NAQ1 | 68.817 | 372 | 77 | 3 | 131 | 463 | 31 | 402 | 4.30e-179 | 519 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0729980 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729980 | MtrunA17_Chr5g0448761 | 31.963 | 219 | 144 | 4 | 131 | 348 | 375 | 589 | 5.88e-30 | 124 |
| Msa0729980 | MtrunA17_Chr5g0441581 | 30.213 | 235 | 149 | 6 | 121 | 348 | 321 | 547 | 4.24e-29 | 121 |
| Msa0729980 | MtrunA17_Chr1g0202341 | 29.707 | 239 | 165 | 3 | 114 | 352 | 342 | 577 | 1.84e-27 | 116 |
| Msa0729980 | MtrunA17_Chr1g0196541 | 31.982 | 222 | 144 | 4 | 131 | 348 | 301 | 519 | 8.01e-26 | 111 |
| Msa0729980 | MtrunA17_Chr2g0296781 | 28.829 | 222 | 151 | 4 | 131 | 348 | 301 | 519 | 1.25e-24 | 107 |
| Msa0729980 | MtrunA17_Chr2g0329031 | 30.275 | 218 | 145 | 5 | 132 | 348 | 314 | 525 | 1.31e-24 | 107 |
| Msa0729980 | MtrunA17_Chr3g0080351 | 27.650 | 217 | 153 | 4 | 132 | 348 | 375 | 587 | 1.66e-23 | 104 |
| Msa0729980 | MtrunA17_Chr3g0118611 | 28.251 | 223 | 153 | 4 | 128 | 348 | 248 | 465 | 2.05e-23 | 104 |
| Msa0729980 | MtrunA17_Chr6g0477261 | 24.929 | 353 | 218 | 7 | 131 | 444 | 190 | 534 | 2.18e-23 | 103 |
| Msa0729980 | MtrunA17_Chr1g0207551 | 30.357 | 224 | 148 | 5 | 128 | 348 | 335 | 553 | 2.79e-23 | 103 |
| Msa0729980 | MtrunA17_Chr5g0448511 | 28.440 | 218 | 153 | 3 | 131 | 348 | 147 | 361 | 1.04e-22 | 101 |
| Msa0729980 | MtrunA17_Chr2g0287061 | 31.441 | 229 | 127 | 4 | 131 | 348 | 456 | 665 | 1.23e-22 | 102 |
| Msa0729980 | MtrunA17_Chr8g0363841 | 29.493 | 217 | 149 | 4 | 131 | 346 | 326 | 539 | 1.69e-21 | 98.2 |
| Msa0729980 | MtrunA17_Chr2g0287651 | 29.412 | 221 | 143 | 5 | 131 | 348 | 386 | 596 | 3.55e-21 | 97.4 |
| Msa0729980 | MtrunA17_Chr2g0291581 | 30.093 | 216 | 140 | 5 | 137 | 345 | 371 | 582 | 2.41e-20 | 94.7 |
| Msa0729980 | MtrunA17_Chr1g0203051 | 31.579 | 171 | 110 | 3 | 131 | 300 | 388 | 552 | 6.42e-20 | 93.2 |
| Msa0729980 | MtrunA17_Chr5g0440451 | 28.761 | 226 | 148 | 6 | 128 | 348 | 351 | 568 | 6.63e-20 | 93.6 |
| Msa0729980 | MtrunA17_Chr3g0082121 | 29.515 | 227 | 151 | 5 | 121 | 346 | 334 | 552 | 2.05e-19 | 91.7 |
| Msa0729980 | MtrunA17_Chr2g0324011 | 23.643 | 258 | 188 | 6 | 120 | 372 | 307 | 560 | 1.18e-18 | 89.4 |
| Msa0729980 | MtrunA17_Chr1g0198761 | 23.989 | 371 | 211 | 11 | 132 | 456 | 367 | 712 | 1.15e-17 | 86.3 |
| Msa0729980 | MtrunA17_Chr6g0458391 | 27.149 | 221 | 147 | 6 | 131 | 346 | 516 | 727 | 3.66e-17 | 84.7 |
| Msa0729980 | MtrunA17_Chr1g0203721 | 23.474 | 213 | 159 | 3 | 133 | 345 | 376 | 584 | 1.75e-16 | 82.8 |
| Msa0729980 | MtrunA17_Chr4g0033611 | 37.963 | 108 | 56 | 3 | 16 | 121 | 78 | 176 | 3.47e-14 | 72.8 |
| Msa0729980 | MtrunA17_Chr2g0308841 | 27.206 | 136 | 97 | 2 | 159 | 293 | 4 | 138 | 2.68e-13 | 70.1 |
| Msa0729980 | MtrunA17_Chr2g0329421 | 37.037 | 108 | 57 | 3 | 16 | 121 | 29 | 127 | 1.60e-12 | 67.0 |
| Msa0729980 | MtrunA17_Chr5g0431001 | 35.238 | 105 | 65 | 3 | 132 | 235 | 381 | 483 | 5.55e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729980 | AT4G38180.1 | 33.333 | 219 | 141 | 4 | 131 | 348 | 384 | 598 | 1.05e-32 | 133 |
| Msa0729980 | AT4G15090.1 | 29.596 | 223 | 151 | 4 | 128 | 348 | 355 | 573 | 3.12e-26 | 113 |
| Msa0729980 | AT4G15090.5 | 29.596 | 223 | 151 | 4 | 128 | 348 | 355 | 573 | 3.12e-26 | 113 |
| Msa0729980 | AT4G15090.3 | 29.596 | 223 | 151 | 4 | 128 | 348 | 355 | 573 | 3.12e-26 | 113 |
| Msa0729980 | AT4G15090.2 | 29.596 | 223 | 151 | 4 | 128 | 348 | 355 | 573 | 3.12e-26 | 113 |
| Msa0729980 | AT4G15090.4 | 29.596 | 223 | 151 | 4 | 128 | 348 | 355 | 573 | 3.12e-26 | 113 |
| Msa0729980 | AT3G22170.2 | 26.457 | 223 | 158 | 4 | 128 | 348 | 364 | 582 | 4.35e-24 | 107 |
| Msa0729980 | AT3G22170.1 | 26.457 | 223 | 158 | 4 | 128 | 348 | 364 | 582 | 4.35e-24 | 107 |
| Msa0729980 | AT2G27110.2 | 26.271 | 236 | 167 | 3 | 115 | 348 | 313 | 543 | 1.30e-23 | 105 |
| Msa0729980 | AT2G27110.1 | 26.271 | 236 | 167 | 3 | 115 | 348 | 313 | 543 | 1.30e-23 | 105 |
| Msa0729980 | AT2G27110.3 | 26.271 | 236 | 167 | 3 | 115 | 348 | 168 | 398 | 1.48e-23 | 105 |
| Msa0729980 | AT4G38170.1 | 28.311 | 219 | 154 | 3 | 130 | 348 | 148 | 363 | 1.97e-22 | 100 |
| Msa0729980 | AT3G06250.2 | 31.193 | 218 | 141 | 4 | 131 | 348 | 460 | 668 | 3.25e-22 | 100 |
| Msa0729980 | AT3G06250.1 | 31.193 | 218 | 141 | 4 | 131 | 348 | 460 | 668 | 3.25e-22 | 100 |
| Msa0729980 | AT3G06250.3 | 31.193 | 218 | 141 | 4 | 131 | 348 | 460 | 668 | 3.25e-22 | 100 |
| Msa0729980 | AT2G32250.8 | 28.111 | 217 | 152 | 3 | 132 | 348 | 264 | 476 | 6.34e-21 | 97.1 |
| Msa0729980 | AT2G32250.5 | 28.111 | 217 | 152 | 3 | 132 | 348 | 305 | 517 | 6.39e-21 | 97.1 |
| Msa0729980 | AT2G32250.7 | 28.111 | 217 | 152 | 3 | 132 | 348 | 264 | 476 | 6.47e-21 | 97.1 |
| Msa0729980 | AT2G32250.2 | 28.111 | 217 | 152 | 3 | 132 | 348 | 305 | 517 | 7.36e-21 | 97.1 |
| Msa0729980 | AT2G32250.4 | 28.111 | 217 | 152 | 3 | 132 | 348 | 305 | 517 | 7.36e-21 | 97.1 |
| Msa0729980 | AT2G32250.6 | 28.111 | 217 | 152 | 3 | 132 | 348 | 305 | 517 | 7.43e-21 | 97.1 |
| Msa0729980 | AT2G32250.1 | 28.111 | 217 | 152 | 3 | 132 | 348 | 305 | 517 | 7.43e-21 | 97.1 |
| Msa0729980 | AT2G32250.3 | 28.111 | 217 | 152 | 3 | 132 | 348 | 305 | 517 | 7.43e-21 | 97.1 |
| Msa0729980 | AT1G52520.1 | 29.098 | 244 | 151 | 8 | 117 | 345 | 363 | 599 | 1.52e-19 | 92.8 |
| Msa0729980 | AT5G18960.2 | 28.440 | 218 | 147 | 4 | 131 | 348 | 484 | 692 | 2.44e-19 | 92.0 |
| Msa0729980 | AT5G18960.1 | 28.440 | 218 | 147 | 4 | 131 | 348 | 484 | 692 | 2.44e-19 | 92.0 |
| Msa0729980 | AT4G19990.3 | 27.111 | 225 | 156 | 5 | 128 | 348 | 303 | 523 | 4.70e-19 | 91.3 |
| Msa0729980 | AT4G19990.4 | 27.111 | 225 | 156 | 5 | 128 | 348 | 303 | 523 | 4.70e-19 | 91.3 |
| Msa0729980 | AT4G19990.1 | 27.111 | 225 | 156 | 5 | 128 | 348 | 246 | 466 | 4.72e-19 | 91.3 |
| Msa0729980 | AT4G19990.5 | 27.111 | 225 | 156 | 5 | 128 | 348 | 303 | 523 | 5.26e-19 | 90.9 |
| Msa0729980 | AT4G19990.6 | 27.111 | 225 | 156 | 5 | 128 | 348 | 303 | 523 | 5.34e-19 | 90.9 |
| Msa0729980 | AT4G19990.2 | 27.111 | 225 | 156 | 5 | 128 | 348 | 303 | 523 | 5.34e-19 | 90.9 |
| Msa0729980 | AT4G19990.7 | 27.111 | 225 | 156 | 5 | 128 | 348 | 317 | 537 | 6.11e-19 | 90.9 |
| Msa0729980 | AT1G80010.1 | 30.120 | 166 | 115 | 1 | 131 | 296 | 406 | 570 | 5.63e-18 | 87.8 |
| Msa0729980 | AT1G76320.3 | 26.047 | 215 | 151 | 5 | 133 | 346 | 299 | 506 | 2.45e-17 | 85.5 |
| Msa0729980 | AT1G76320.1 | 28.177 | 181 | 127 | 3 | 133 | 313 | 299 | 476 | 3.47e-17 | 85.1 |
| Msa0729980 | AT1G76320.4 | 28.177 | 181 | 127 | 3 | 133 | 313 | 299 | 476 | 3.47e-17 | 85.1 |
| Msa0729980 | AT1G76320.2 | 28.177 | 181 | 127 | 3 | 133 | 313 | 299 | 476 | 3.58e-17 | 85.1 |
Find 85 sgRNAs with CRISPR-Local
Find 326 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTTAGTCTTTGCAAATTT+TGG | 0.090976 | 5_1:-38083727 | None:intergenic |
| AAATTGCTTCTTGTGTTAAA+TGG | 0.133780 | 5_1:+38083592 | Msa0729980:CDS |
| ATGTTAACTTGGTTGAATTT+TGG | 0.201090 | 5_1:+38083033 | Msa0729980:CDS |
| ATATATTTCAACATGAATTA+TGG | 0.225211 | 5_1:+38083198 | Msa0729980:CDS |
| TTCTACTTCGTCAGGAATAT+TGG | 0.232123 | 5_1:-38083695 | None:intergenic |
| GCAATTATGGAGATGATCTT+TGG | 0.251938 | 5_1:-38083866 | None:intergenic |
| TTTAATTCATCATCACAATT+TGG | 0.253101 | 5_1:-38081754 | None:intergenic |
| GGGATTTCTTACCGCAATTA+TGG | 0.254247 | 5_1:-38083879 | None:intergenic |
| TTGAGTTAGAAAAGAATAAA+TGG | 0.272170 | 5_1:+38082877 | Msa0729980:CDS |
| AGGACAGATGATTTGATTCT+TGG | 0.289591 | 5_1:+38083670 | Msa0729980:CDS |
| AAGTTTCAAGTCATGTGTTT+GGG | 0.313111 | 5_1:+38082800 | Msa0729980:CDS |
| AATTGCTTCTTGTGTTAAAT+GGG | 0.313257 | 5_1:+38083593 | Msa0729980:CDS |
| TTCTAAACCAAAACTATTGT+TGG | 0.324685 | 5_1:+38083124 | Msa0729980:CDS |
| CCACGTTCCAACAATAGTTT+TGG | 0.324928 | 5_1:-38083131 | None:intergenic |
| AATTCAACCAAGTTAACATT+AGG | 0.328343 | 5_1:-38083029 | None:intergenic |
| AAATTGTGATGATGAATTAA+AGG | 0.328661 | 5_1:+38081756 | Msa0729980:CDS |
| TCCTTACCATCCTTCTTATT+CGG | 0.334513 | 5_1:-38081940 | None:intergenic |
| AAAGTTTCAAGTCATGTGTT+TGG | 0.339166 | 5_1:+38082799 | Msa0729980:CDS |
| GAAAGTGAGAATTCTTTCTA+TGG | 0.344600 | 5_1:+38082993 | Msa0729980:CDS |
| GAATTCATCCTCATCATTCA+TGG | 0.363918 | 5_1:-38082772 | None:intergenic |
| CAATTATGGAGATGATCTTT+GGG | 0.366526 | 5_1:-38083865 | None:intergenic |
| CAAGTCTCTTCAAACTCATT+TGG | 0.372368 | 5_1:-38082834 | None:intergenic |
| CTTAGAAACGGTCTCTTCAT+AGG | 0.411850 | 5_1:-38082108 | None:intergenic |
| CTATGAAGAGACCGTTTCTA+AGG | 0.416138 | 5_1:+38082109 | Msa0729980:CDS |
| GGAAGGATTTCTACTTCGTC+AGG | 0.426183 | 5_1:-38083703 | None:intergenic |
| CAAATGAGTTTGAAGAGACT+TGG | 0.432734 | 5_1:+38082835 | Msa0729980:CDS |
| AAAGTGTCTTTGAAATATGT+TGG | 0.433279 | 5_1:-38082936 | None:intergenic |
| GGACAGATGATTTGATTCTT+GGG | 0.434817 | 5_1:+38083671 | Msa0729980:CDS |
| TCTAAATCCTAATGTTAACT+TGG | 0.442556 | 5_1:+38083022 | Msa0729980:CDS |
| AATAGAAGCGCAACGACATA+AGG | 0.451925 | 5_1:+38083073 | Msa0729980:CDS |
| GAAAATAAGAAAGATGAAGA+TGG | 0.456611 | 5_1:+38083245 | Msa0729980:CDS |
| GGATTGCATGCGTGGATTGT+GGG | 0.462406 | 5_1:+38083219 | Msa0729980:CDS |
| CATAGCTGTGTGGAGAAGGC+TGG | 0.465632 | 5_1:+38083556 | Msa0729980:CDS |
| TGTTGTTAGGATTGGAAGAA+TGG | 0.466698 | 5_1:+38083988 | Msa0729980:intron |
| AAGTGTCTTTGAAATATGTT+GGG | 0.467879 | 5_1:-38082935 | None:intergenic |
| CCAAAATTTGCAAAGACTAA+AGG | 0.474060 | 5_1:+38083727 | Msa0729980:CDS |
| AAACAGTTGGACGGATTTGA+AGG | 0.477202 | 5_1:+38083631 | Msa0729980:CDS |
| AAAATAAGAAAGATGAAGAT+GGG | 0.489609 | 5_1:+38083246 | Msa0729980:CDS |
| CTGTCAAGGTTAGAAGAAGA+AGG | 0.491761 | 5_1:+38081977 | Msa0729980:CDS |
| GGGTTATTTGCCGAATAAGA+AGG | 0.500697 | 5_1:+38081930 | Msa0729980:CDS |
| TGGAAGAATGGCATAGAAGA+AGG | 0.510515 | 5_1:+38084000 | Msa0729980:CDS |
| TTCCTTGCAGACCTTAGAAA+CGG | 0.510667 | 5_1:-38082120 | None:intergenic |
| TGGATTGCATGCGTGGATTG+TGG | 0.521916 | 5_1:+38083218 | Msa0729980:CDS |
| CTTACATAGCTGTGTGGAGA+AGG | 0.525967 | 5_1:+38083552 | Msa0729980:CDS |
| TAAGAAAGATGAAGATGGGA+TGG | 0.532467 | 5_1:+38083250 | Msa0729980:CDS |
| ATGGCATAGAAGAAGGATGA+AGG | 0.534902 | 5_1:+38084007 | Msa0729980:CDS |
| GATGAATTAAAGGCTACGAT+TGG | 0.535839 | 5_1:+38081766 | Msa0729980:CDS |
| GTTAGAAAAGAATAAATGGT+TGG | 0.538518 | 5_1:+38082881 | Msa0729980:CDS |
| GGTAGTGGTAAAAGAATCAA+AGG | 0.539060 | 5_1:+38083748 | Msa0729980:CDS |
| GTTAAATGGGGCTGTTAACA+TGG | 0.541401 | 5_1:+38083606 | Msa0729980:CDS |
| TATGATAATAGTGAGATCAA+TGG | 0.545302 | 5_1:+38083287 | Msa0729980:CDS |
| AAGAATCAAATCATCTGTCC+TGG | 0.550254 | 5_1:-38083668 | None:intergenic |
| AGAAGGGCTTTAACAAGAGA+AGG | 0.550276 | 5_1:+38081994 | Msa0729980:CDS |
| GCCGAATAAGAAGGATGGTA+AGG | 0.554603 | 5_1:+38081939 | Msa0729980:CDS |
| TGAATTATGGATTGCATGCG+TGG | 0.559471 | 5_1:+38083211 | Msa0729980:CDS |
| TCTCCACACAGCTATGTAAG+TGG | 0.567374 | 5_1:-38083549 | None:intergenic |
| TTTGCAAAGACTAAAGGTAG+TGG | 0.573810 | 5_1:+38083733 | Msa0729980:CDS |
| GGAGAAGGCTGGAAAAGATA+AGG | 0.578848 | 5_1:+38083567 | Msa0729980:CDS |
| ATGATCTTTGGGGACAATTG+CGG | 0.579640 | 5_1:-38083854 | None:intergenic |
| AAATGAGTTTGAAGAGACTT+GGG | 0.582686 | 5_1:+38082836 | Msa0729980:CDS |
| CTACTCATAGATTGTGCATG+TGG | 0.586429 | 5_1:+38082712 | Msa0729980:intron |
| GTGAAGCAAGTGGATATGTA+CGG | 0.589127 | 5_1:-38082086 | None:intergenic |
| GCAAGAGATGTGTATACTCG+TGG | 0.591502 | 5_1:+38083167 | Msa0729980:CDS |
| GCAAACTCATTTCTGATGTG+TGG | 0.593693 | 5_1:+38083524 | Msa0729980:CDS |
| AAGGGAGTTCTAAGAGAACC+AGG | 0.594888 | 5_1:+38083650 | Msa0729980:CDS |
| TGTCAAGGTTAGAAGAAGAA+GGG | 0.596214 | 5_1:+38081978 | Msa0729980:CDS |
| GCAAAGTGGGTCTACTGTCA+AGG | 0.604334 | 5_1:+38081963 | Msa0729980:CDS |
| AACAGTTGGACGGATTTGAA+GGG | 0.610026 | 5_1:+38083632 | Msa0729980:CDS |
| GTATTTGATACGTTAGCAGA+AGG | 0.613843 | 5_1:+38081793 | Msa0729980:CDS |
| ATTGCTTCTTGTGTTAAATG+GGG | 0.627748 | 5_1:+38083594 | Msa0729980:CDS |
| CAAGAGATGTGTATACTCGT+GGG | 0.630216 | 5_1:+38083168 | Msa0729980:CDS |
| TATTTGCCGAATAAGAAGGA+TGG | 0.633324 | 5_1:+38081934 | Msa0729980:CDS |
| CCAAAACTATTGTTGGAACG+TGG | 0.638878 | 5_1:+38083131 | Msa0729980:CDS |
| CTCTTCATAGGTGAAGCAAG+TGG | 0.639442 | 5_1:-38082096 | None:intergenic |
| AGGATGGTAAGGAGCAAAGT+GGG | 0.640969 | 5_1:+38081950 | Msa0729980:CDS |
| AATTATGGAGATGATCTTTG+GGG | 0.647744 | 5_1:-38083864 | None:intergenic |
| TGTTGGAACGTGGTATCGAG+AGG | 0.648329 | 5_1:+38083141 | Msa0729980:CDS |
| AGTTTCAAGTCATGTGTTTG+GGG | 0.653537 | 5_1:+38082801 | Msa0729980:CDS |
| AAAGATCATCTCCATAATTG+CGG | 0.656901 | 5_1:+38083868 | Msa0729980:CDS |
| AAGGATGGTAAGGAGCAAAG+TGG | 0.678159 | 5_1:+38081949 | Msa0729980:CDS |
| GCAAGACTTTGTAAGGCATG+CGG | 0.678885 | 5_1:+38083810 | Msa0729980:CDS |
| TGTTTGAGATTCGAAGCACG+TGG | 0.679560 | 5_1:+38082910 | Msa0729980:CDS |
| AGTGGTAAAAGAATCAAAGG+TGG | 0.684382 | 5_1:+38083751 | Msa0729980:CDS |
| CGGTGTTTCCATGAATGATG+AGG | 0.686614 | 5_1:+38082764 | Msa0729980:CDS |
| GAACCACTTACATAGCTGTG+TGG | 0.775450 | 5_1:+38083546 | Msa0729980:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTTCAACATGAATTA+TGG | + | chr5_1:38083198-38083217 | Msa0729980:CDS | 15.0% |
| !!! | AAAATAAGTACATTTTGAAA+GGG | - | chr5_1:38083902-38083921 | None:intergenic | 15.0% |
| !! | ATATATTTCAACATGAATTA+TGG | + | chr5_1:38083198-38083217 | Msa0729980:CDS | 15.0% |
| !!! | AAAATAAGTACATTTTGAAA+GGG | - | chr5_1:38083902-38083921 | None:intergenic | 15.0% |
| !! | TTTAATTCATCATCACAATT+TGG | - | chr5_1:38081757-38081776 | None:intergenic | 20.0% |
| !!! | AAATTGTGATGATGAATTAA+AGG | + | chr5_1:38081756-38081775 | Msa0729980:CDS | 20.0% |
| !!! | AACATTGTTCTTTTAATAAG+TGG | - | chr5_1:38082215-38082234 | None:intergenic | 20.0% |
| !! | ACTTATTAAAAGAACAATGT+TGG | + | chr5_1:38082214-38082233 | Msa0729980:intron | 20.0% |
| !! | CTTATTAAAAGAACAATGTT+GGG | + | chr5_1:38082215-38082234 | Msa0729980:intron | 20.0% |
| !! | TTATTAAAAGAACAATGTTG+GGG | + | chr5_1:38082216-38082235 | Msa0729980:intron | 20.0% |
| !!! | TTTTGATAGATTACTTTAGA+AGG | + | chr5_1:38082325-38082344 | Msa0729980:intron | 20.0% |
| !! | AGGAAAAATTATTCCTTATT+TGG | + | chr5_1:38082438-38082457 | Msa0729980:intron | 20.0% |
| !!! | GGAAAAATTATTCCTTATTT+GGG | + | chr5_1:38082439-38082458 | Msa0729980:intron | 20.0% |
| !!! | GAAAAATTATTCCTTATTTG+GGG | + | chr5_1:38082440-38082459 | Msa0729980:intron | 20.0% |
| !!! | AAAAAAGTTTCTGAAAAAGT+CGG | + | chr5_1:38082744-38082763 | Msa0729980:CDS | 20.0% |
| !! | TTGAGTTAGAAAAGAATAAA+TGG | + | chr5_1:38082877-38082896 | Msa0729980:CDS | 20.0% |
| !! | AAAATAAGAAAGATGAAGAT+GGG | + | chr5_1:38083246-38083265 | Msa0729980:CDS | 20.0% |
| !!! | CAAAATAAGTACATTTTGAA+AGG | - | chr5_1:38083903-38083922 | None:intergenic | 20.0% |
| !! | TTTAATTCATCATCACAATT+TGG | - | chr5_1:38081757-38081776 | None:intergenic | 20.0% |
| !!! | AAATTGTGATGATGAATTAA+AGG | + | chr5_1:38081756-38081775 | Msa0729980:CDS | 20.0% |
| !!! | AACATTGTTCTTTTAATAAG+TGG | - | chr5_1:38082215-38082234 | None:intergenic | 20.0% |
| !! | ACTTATTAAAAGAACAATGT+TGG | + | chr5_1:38082214-38082233 | Msa0729980:intron | 20.0% |
| !! | CTTATTAAAAGAACAATGTT+GGG | + | chr5_1:38082215-38082234 | Msa0729980:intron | 20.0% |
| !! | TTATTAAAAGAACAATGTTG+GGG | + | chr5_1:38082216-38082235 | Msa0729980:intron | 20.0% |
| !!! | TTTTGATAGATTACTTTAGA+AGG | + | chr5_1:38082325-38082344 | Msa0729980:intron | 20.0% |
| !! | AGGAAAAATTATTCCTTATT+TGG | + | chr5_1:38082438-38082457 | Msa0729980:intron | 20.0% |
| !!! | GGAAAAATTATTCCTTATTT+GGG | + | chr5_1:38082439-38082458 | Msa0729980:intron | 20.0% |
| !!! | GAAAAATTATTCCTTATTTG+GGG | + | chr5_1:38082440-38082459 | Msa0729980:intron | 20.0% |
| !!! | AAAAAAGTTTCTGAAAAAGT+CGG | + | chr5_1:38082744-38082763 | Msa0729980:CDS | 20.0% |
| !! | TTGAGTTAGAAAAGAATAAA+TGG | + | chr5_1:38082877-38082896 | Msa0729980:CDS | 20.0% |
| !! | AAAATAAGAAAGATGAAGAT+GGG | + | chr5_1:38083246-38083265 | Msa0729980:CDS | 20.0% |
| !!! | CAAAATAAGTACATTTTGAA+AGG | - | chr5_1:38083903-38083922 | None:intergenic | 20.0% |
| !! | TCATCGACTATAGAAAAAAA+CGG | + | chr5_1:38081871-38081890 | Msa0729980:CDS | 25.0% |
| !!! | ATGCAAATGTTGTTTTCAAA+TGG | + | chr5_1:38082022-38082041 | Msa0729980:CDS | 25.0% |
| !!! | TGCAAATGTTGTTTTCAAAT+GGG | + | chr5_1:38082023-38082042 | Msa0729980:CDS | 25.0% |
| !! | ATGGTTGTTTGAAAAGTTTT+TGG | + | chr5_1:38082602-38082621 | Msa0729980:intron | 25.0% |
| ! | GTTAGAAAAGAATAAATGGT+TGG | + | chr5_1:38082881-38082900 | Msa0729980:CDS | 25.0% |
| !!! | AAGTGTCTTTGAAATATGTT+GGG | - | chr5_1:38082938-38082957 | None:intergenic | 25.0% |
| !!! | AAAGTGTCTTTGAAATATGT+TGG | - | chr5_1:38082939-38082958 | None:intergenic | 25.0% |
| !! | ATATTTCAAAGACACTTTTC+TGG | + | chr5_1:38082941-38082960 | Msa0729980:CDS | 25.0% |
| ! | TCTAAATCCTAATGTTAACT+TGG | + | chr5_1:38083022-38083041 | Msa0729980:CDS | 25.0% |
| ! | AATTCAACCAAGTTAACATT+AGG | - | chr5_1:38083032-38083051 | None:intergenic | 25.0% |
| !!! | ATGTTAACTTGGTTGAATTT+TGG | + | chr5_1:38083033-38083052 | Msa0729980:CDS | 25.0% |
| ! | TTCTAAACCAAAACTATTGT+TGG | + | chr5_1:38083124-38083143 | Msa0729980:CDS | 25.0% |
| ! | GAAAATAAGAAAGATGAAGA+TGG | + | chr5_1:38083245-38083264 | Msa0729980:CDS | 25.0% |
| ! | TATGATAATAGTGAGATCAA+TGG | + | chr5_1:38083287-38083306 | Msa0729980:CDS | 25.0% |
| !!! | ACACATACTTTGTGTTTTAA+AGG | + | chr5_1:38083397-38083416 | Msa0729980:intron | 25.0% |
| !!! | CACATACTTTGTGTTTTAAA+GGG | + | chr5_1:38083398-38083417 | Msa0729980:intron | 25.0% |
| ! | AAATTGCTTCTTGTGTTAAA+TGG | + | chr5_1:38083592-38083611 | Msa0729980:CDS | 25.0% |
| ! | AATTGCTTCTTGTGTTAAAT+GGG | + | chr5_1:38083593-38083612 | Msa0729980:CDS | 25.0% |
| ! | AAAAAAAGCAAGACTTTGTA+AGG | + | chr5_1:38083803-38083822 | Msa0729980:CDS | 25.0% |
| ! | TATTTGTACTTGATGTTGTT+AGG | + | chr5_1:38083975-38083994 | Msa0729980:intron | 25.0% |
| !! | TCATCGACTATAGAAAAAAA+CGG | + | chr5_1:38081871-38081890 | Msa0729980:CDS | 25.0% |
| !!! | ATGCAAATGTTGTTTTCAAA+TGG | + | chr5_1:38082022-38082041 | Msa0729980:CDS | 25.0% |
| !!! | TGCAAATGTTGTTTTCAAAT+GGG | + | chr5_1:38082023-38082042 | Msa0729980:CDS | 25.0% |
| !! | ATGGTTGTTTGAAAAGTTTT+TGG | + | chr5_1:38082602-38082621 | Msa0729980:intron | 25.0% |
| ! | GTTAGAAAAGAATAAATGGT+TGG | + | chr5_1:38082881-38082900 | Msa0729980:CDS | 25.0% |
| !!! | AAGTGTCTTTGAAATATGTT+GGG | - | chr5_1:38082938-38082957 | None:intergenic | 25.0% |
| !!! | AAAGTGTCTTTGAAATATGT+TGG | - | chr5_1:38082939-38082958 | None:intergenic | 25.0% |
| !! | ATATTTCAAAGACACTTTTC+TGG | + | chr5_1:38082941-38082960 | Msa0729980:CDS | 25.0% |
| ! | TCTAAATCCTAATGTTAACT+TGG | + | chr5_1:38083022-38083041 | Msa0729980:CDS | 25.0% |
| ! | AATTCAACCAAGTTAACATT+AGG | - | chr5_1:38083032-38083051 | None:intergenic | 25.0% |
| !!! | ATGTTAACTTGGTTGAATTT+TGG | + | chr5_1:38083033-38083052 | Msa0729980:CDS | 25.0% |
| ! | TTCTAAACCAAAACTATTGT+TGG | + | chr5_1:38083124-38083143 | Msa0729980:CDS | 25.0% |
| ! | GAAAATAAGAAAGATGAAGA+TGG | + | chr5_1:38083245-38083264 | Msa0729980:CDS | 25.0% |
| ! | TATGATAATAGTGAGATCAA+TGG | + | chr5_1:38083287-38083306 | Msa0729980:CDS | 25.0% |
| !!! | ACACATACTTTGTGTTTTAA+AGG | + | chr5_1:38083397-38083416 | Msa0729980:intron | 25.0% |
| !!! | CACATACTTTGTGTTTTAAA+GGG | + | chr5_1:38083398-38083417 | Msa0729980:intron | 25.0% |
| ! | AAATTGCTTCTTGTGTTAAA+TGG | + | chr5_1:38083592-38083611 | Msa0729980:CDS | 25.0% |
| ! | AATTGCTTCTTGTGTTAAAT+GGG | + | chr5_1:38083593-38083612 | Msa0729980:CDS | 25.0% |
| ! | AAAAAAAGCAAGACTTTGTA+AGG | + | chr5_1:38083803-38083822 | Msa0729980:CDS | 25.0% |
| ! | TATTTGTACTTGATGTTGTT+AGG | + | chr5_1:38083975-38083994 | Msa0729980:intron | 25.0% |
| !! | TATTTTGTTTGCTCGAAAGA+GGG | + | chr5_1:38081910-38081929 | Msa0729980:CDS | 30.0% |
| !!! | AAATGTTGTTTTCAAATGGG+TGG | + | chr5_1:38082026-38082045 | Msa0729980:CDS | 30.0% |
| !!! | AATGTTGTTTTCAAATGGGT+GGG | + | chr5_1:38082027-38082046 | Msa0729980:CDS | 30.0% |
| ATTCAAAGTCGATAAATCTC+TGG | - | chr5_1:38082286-38082305 | None:intergenic | 30.0% | |
| TCATACGCATAATAAAAGGA+TGG | - | chr5_1:38082366-38082385 | None:intergenic | 30.0% | |
| ! | ATCCTTTTATTATGCGTATG+AGG | + | chr5_1:38082365-38082384 | Msa0729980:intron | 30.0% |
| TACCTCATACGCATAATAAA+AGG | - | chr5_1:38082370-38082389 | None:intergenic | 30.0% | |
| ! | TTTTATTATGCGTATGAGGT+AGG | + | chr5_1:38082369-38082388 | Msa0729980:intron | 30.0% |
| AGAAAAGTGATTCATTCGTA+TGG | + | chr5_1:38082583-38082602 | Msa0729980:intron | 30.0% | |
| !! | TGAAAAGTTTTTGGAAGCAA+TGG | + | chr5_1:38082611-38082630 | Msa0729980:intron | 30.0% |
| !! | GAAAAGTTTTTGGAAGCAAT+GGG | + | chr5_1:38082612-38082631 | Msa0729980:intron | 30.0% |
| TGATCGGTTATTATAAGAGT+TGG | - | chr5_1:38082648-38082667 | None:intergenic | 30.0% | |
| !! | ATTTTCTATAGCCACTTTCA+TGG | - | chr5_1:38082679-38082698 | None:intergenic | 30.0% |
| ! | AAAGTTTCAAGTCATGTGTT+TGG | + | chr5_1:38082799-38082818 | Msa0729980:CDS | 30.0% |
| ! | AAGTTTCAAGTCATGTGTTT+GGG | + | chr5_1:38082800-38082819 | Msa0729980:CDS | 30.0% |
| AAATGAGTTTGAAGAGACTT+GGG | + | chr5_1:38082836-38082855 | Msa0729980:CDS | 30.0% | |
| GAAAGTGAGAATTCTTTCTA+TGG | + | chr5_1:38082993-38083012 | Msa0729980:CDS | 30.0% | |
| ATACCAAGTACATTGTGAAT+AGG | + | chr5_1:38083437-38083456 | Msa0729980:intron | 30.0% | |
| TTGTCAGCTATGTCAAAAAT+AGG | - | chr5_1:38083487-38083506 | None:intergenic | 30.0% | |
| ATTGCTTCTTGTGTTAAATG+GGG | + | chr5_1:38083594-38083613 | Msa0729980:CDS | 30.0% | |
| TGTTAACATGGAAAAACAGT+TGG | + | chr5_1:38083618-38083637 | Msa0729980:CDS | 30.0% | |
| !! | TTAGTCTTTGCAAATTTTGG+TGG | - | chr5_1:38083727-38083746 | None:intergenic | 30.0% |
| !! | CCTTTAGTCTTTGCAAATTT+TGG | - | chr5_1:38083730-38083749 | None:intergenic | 30.0% |
| CCAAAATTTGCAAAGACTAA+AGG | + | chr5_1:38083727-38083746 | Msa0729980:CDS | 30.0% | |
| AATTATGGAGATGATCTTTG+GGG | - | chr5_1:38083867-38083886 | None:intergenic | 30.0% | |
| CAATTATGGAGATGATCTTT+GGG | - | chr5_1:38083868-38083887 | None:intergenic | 30.0% | |
| AAAGATCATCTCCATAATTG+CGG | + | chr5_1:38083868-38083887 | Msa0729980:CDS | 30.0% | |
| ! | TCTTTTTGTGCTCATGTTTA+TGG | + | chr5_1:38083924-38083943 | Msa0729980:intron | 30.0% |
| !!! | GTGCACTTGTTTTGATATTT+TGG | + | chr5_1:38083946-38083965 | Msa0729980:intron | 30.0% |
| !! | TATTTTGTTTGCTCGAAAGA+GGG | + | chr5_1:38081910-38081929 | Msa0729980:CDS | 30.0% |
| !!! | AAATGTTGTTTTCAAATGGG+TGG | + | chr5_1:38082026-38082045 | Msa0729980:CDS | 30.0% |
| !!! | AATGTTGTTTTCAAATGGGT+GGG | + | chr5_1:38082027-38082046 | Msa0729980:CDS | 30.0% |
| ATTCAAAGTCGATAAATCTC+TGG | - | chr5_1:38082286-38082305 | None:intergenic | 30.0% | |
| TCATACGCATAATAAAAGGA+TGG | - | chr5_1:38082366-38082385 | None:intergenic | 30.0% | |
| ! | ATCCTTTTATTATGCGTATG+AGG | + | chr5_1:38082365-38082384 | Msa0729980:intron | 30.0% |
| TACCTCATACGCATAATAAA+AGG | - | chr5_1:38082370-38082389 | None:intergenic | 30.0% | |
| ! | TTTTATTATGCGTATGAGGT+AGG | + | chr5_1:38082369-38082388 | Msa0729980:intron | 30.0% |
| AGAAAAGTGATTCATTCGTA+TGG | + | chr5_1:38082583-38082602 | Msa0729980:intron | 30.0% | |
| !! | TGAAAAGTTTTTGGAAGCAA+TGG | + | chr5_1:38082611-38082630 | Msa0729980:intron | 30.0% |
| !! | GAAAAGTTTTTGGAAGCAAT+GGG | + | chr5_1:38082612-38082631 | Msa0729980:intron | 30.0% |
| TGATCGGTTATTATAAGAGT+TGG | - | chr5_1:38082648-38082667 | None:intergenic | 30.0% | |
| !! | ATTTTCTATAGCCACTTTCA+TGG | - | chr5_1:38082679-38082698 | None:intergenic | 30.0% |
| ! | AAAGTTTCAAGTCATGTGTT+TGG | + | chr5_1:38082799-38082818 | Msa0729980:CDS | 30.0% |
| ! | AAGTTTCAAGTCATGTGTTT+GGG | + | chr5_1:38082800-38082819 | Msa0729980:CDS | 30.0% |
| AAATGAGTTTGAAGAGACTT+GGG | + | chr5_1:38082836-38082855 | Msa0729980:CDS | 30.0% | |
| GAAAGTGAGAATTCTTTCTA+TGG | + | chr5_1:38082993-38083012 | Msa0729980:CDS | 30.0% | |
| ATACCAAGTACATTGTGAAT+AGG | + | chr5_1:38083437-38083456 | Msa0729980:intron | 30.0% | |
| TTGTCAGCTATGTCAAAAAT+AGG | - | chr5_1:38083487-38083506 | None:intergenic | 30.0% | |
| ATTGCTTCTTGTGTTAAATG+GGG | + | chr5_1:38083594-38083613 | Msa0729980:CDS | 30.0% | |
| TGTTAACATGGAAAAACAGT+TGG | + | chr5_1:38083618-38083637 | Msa0729980:CDS | 30.0% | |
| !! | TTAGTCTTTGCAAATTTTGG+TGG | - | chr5_1:38083727-38083746 | None:intergenic | 30.0% |
| !! | CCTTTAGTCTTTGCAAATTT+TGG | - | chr5_1:38083730-38083749 | None:intergenic | 30.0% |
| CCAAAATTTGCAAAGACTAA+AGG | + | chr5_1:38083727-38083746 | Msa0729980:CDS | 30.0% | |
| AATTATGGAGATGATCTTTG+GGG | - | chr5_1:38083867-38083886 | None:intergenic | 30.0% | |
| CAATTATGGAGATGATCTTT+GGG | - | chr5_1:38083868-38083887 | None:intergenic | 30.0% | |
| AAAGATCATCTCCATAATTG+CGG | + | chr5_1:38083868-38083887 | Msa0729980:CDS | 30.0% | |
| ! | TCTTTTTGTGCTCATGTTTA+TGG | + | chr5_1:38083924-38083943 | Msa0729980:intron | 30.0% |
| !!! | GTGCACTTGTTTTGATATTT+TGG | + | chr5_1:38083946-38083965 | Msa0729980:intron | 30.0% |
| GATGAATTAAAGGCTACGAT+TGG | + | chr5_1:38081766-38081785 | Msa0729980:CDS | 35.0% | |
| GTATTTGATACGTTAGCAGA+AGG | + | chr5_1:38081793-38081812 | Msa0729980:CDS | 35.0% | |
| !! | GTATTTTGTTTGCTCGAAAG+AGG | + | chr5_1:38081909-38081928 | Msa0729980:CDS | 35.0% |
| TATTTGCCGAATAAGAAGGA+TGG | + | chr5_1:38081934-38081953 | Msa0729980:CDS | 35.0% | |
| TCCTTACCATCCTTCTTATT+CGG | - | chr5_1:38081943-38081962 | None:intergenic | 35.0% | |
| TGTCAAGGTTAGAAGAAGAA+GGG | + | chr5_1:38081978-38081997 | Msa0729980:CDS | 35.0% | |
| !!! | ATGTTGTTTTCAAATGGGTG+GGG | + | chr5_1:38082028-38082047 | Msa0729980:CDS | 35.0% |
| GCATGTAGTAGAGCAAATAT+AGG | + | chr5_1:38082174-38082193 | Msa0729980:intron | 35.0% | |
| TGTTGGGGTTATGAAAATGT+TGG | + | chr5_1:38082231-38082250 | Msa0729980:intron | 35.0% | |
| CCCAAAAAACATGCTTCAAT+CGG | - | chr5_1:38082404-38082423 | None:intergenic | 35.0% | |
| !!! | CCGATTGAAGCATGTTTTTT+GGG | + | chr5_1:38082401-38082420 | Msa0729980:intron | 35.0% |
| !!! | AAGCATGTTTTTTGGGAAGA+TGG | + | chr5_1:38082408-38082427 | Msa0729980:intron | 35.0% |
| TTTGGGAAGATGGTATTTGT+AGG | + | chr5_1:38082418-38082437 | Msa0729980:intron | 35.0% | |
| ! | TTATTCCTTATTTGGGGATG+TGG | + | chr5_1:38082446-38082465 | Msa0729980:intron | 35.0% |
| ! | TTGATTTTTGCACCTTTCAC+TGG | + | chr5_1:38082507-38082526 | Msa0729980:intron | 35.0% |
| ! | TGATTTTTGCACCTTTCACT+GGG | + | chr5_1:38082508-38082527 | Msa0729980:intron | 35.0% |
| AGGTAATAGATTGTCGATGA+TGG | - | chr5_1:38082539-38082558 | None:intergenic | 35.0% | |
| CATCGACAATCTATTACCTT+CGG | + | chr5_1:38082540-38082559 | Msa0729980:intron | 35.0% | |
| TTTCATGGAAGGATCTTGAT+CGG | - | chr5_1:38082664-38082683 | None:intergenic | 35.0% | |
| GAATTCATCCTCATCATTCA+TGG | - | chr5_1:38082775-38082794 | None:intergenic | 35.0% | |
| ! | AGTTTCAAGTCATGTGTTTG+GGG | + | chr5_1:38082801-38082820 | Msa0729980:CDS | 35.0% |
| CAAGTCTCTTCAAACTCATT+TGG | - | chr5_1:38082837-38082856 | None:intergenic | 35.0% | |
| CAAATGAGTTTGAAGAGACT+TGG | + | chr5_1:38082835-38082854 | Msa0729980:CDS | 35.0% | |
| TAAGAAAGATGAAGATGGGA+TGG | + | chr5_1:38083250-38083269 | Msa0729980:CDS | 35.0% | |
| TTGCTCATGCAAAATGTTTC+AGG | + | chr5_1:38083355-38083374 | Msa0729980:intron | 35.0% | |
| ACACAAAGTATGTGTCTACA+AGG | - | chr5_1:38083392-38083411 | None:intergenic | 35.0% | |
| AACATGGAAAAACAGTTGGA+CGG | + | chr5_1:38083622-38083641 | Msa0729980:CDS | 35.0% | |
| AAGAATCAAATCATCTGTCC+TGG | - | chr5_1:38083671-38083690 | None:intergenic | 35.0% | |
| AGGACAGATGATTTGATTCT+TGG | + | chr5_1:38083670-38083689 | Msa0729980:CDS | 35.0% | |
| GGACAGATGATTTGATTCTT+GGG | + | chr5_1:38083671-38083690 | Msa0729980:CDS | 35.0% | |
| TTCTACTTCGTCAGGAATAT+TGG | - | chr5_1:38083698-38083717 | None:intergenic | 35.0% | |
| !! | TCTTTGCAAATTTTGGTGGA+AGG | - | chr5_1:38083723-38083742 | None:intergenic | 35.0% |
| TTTGCAAAGACTAAAGGTAG+TGG | + | chr5_1:38083733-38083752 | Msa0729980:CDS | 35.0% | |
| ! | GGTAGTGGTAAAAGAATCAA+AGG | + | chr5_1:38083748-38083767 | Msa0729980:CDS | 35.0% |
| AGTGGTAAAAGAATCAAAGG+TGG | + | chr5_1:38083751-38083770 | Msa0729980:CDS | 35.0% | |
| GCAATTATGGAGATGATCTT+TGG | - | chr5_1:38083869-38083888 | None:intergenic | 35.0% | |
| GTACTTGATGTTGTTAGGAT+TGG | + | chr5_1:38083980-38083999 | Msa0729980:intron | 35.0% | |
| TGTTGTTAGGATTGGAAGAA+TGG | + | chr5_1:38083988-38084007 | Msa0729980:intron | 35.0% | |
| GATGAATTAAAGGCTACGAT+TGG | + | chr5_1:38081766-38081785 | Msa0729980:CDS | 35.0% | |
| GTATTTGATACGTTAGCAGA+AGG | + | chr5_1:38081793-38081812 | Msa0729980:CDS | 35.0% | |
| !! | GTATTTTGTTTGCTCGAAAG+AGG | + | chr5_1:38081909-38081928 | Msa0729980:CDS | 35.0% |
| TATTTGCCGAATAAGAAGGA+TGG | + | chr5_1:38081934-38081953 | Msa0729980:CDS | 35.0% | |
| TCCTTACCATCCTTCTTATT+CGG | - | chr5_1:38081943-38081962 | None:intergenic | 35.0% | |
| TGTCAAGGTTAGAAGAAGAA+GGG | + | chr5_1:38081978-38081997 | Msa0729980:CDS | 35.0% | |
| !!! | ATGTTGTTTTCAAATGGGTG+GGG | + | chr5_1:38082028-38082047 | Msa0729980:CDS | 35.0% |
| GCATGTAGTAGAGCAAATAT+AGG | + | chr5_1:38082174-38082193 | Msa0729980:intron | 35.0% | |
| TGTTGGGGTTATGAAAATGT+TGG | + | chr5_1:38082231-38082250 | Msa0729980:intron | 35.0% | |
| CCCAAAAAACATGCTTCAAT+CGG | - | chr5_1:38082404-38082423 | None:intergenic | 35.0% | |
| !!! | CCGATTGAAGCATGTTTTTT+GGG | + | chr5_1:38082401-38082420 | Msa0729980:intron | 35.0% |
| !!! | AAGCATGTTTTTTGGGAAGA+TGG | + | chr5_1:38082408-38082427 | Msa0729980:intron | 35.0% |
| TTTGGGAAGATGGTATTTGT+AGG | + | chr5_1:38082418-38082437 | Msa0729980:intron | 35.0% | |
| ! | TTATTCCTTATTTGGGGATG+TGG | + | chr5_1:38082446-38082465 | Msa0729980:intron | 35.0% |
| ! | TTGATTTTTGCACCTTTCAC+TGG | + | chr5_1:38082507-38082526 | Msa0729980:intron | 35.0% |
| ! | TGATTTTTGCACCTTTCACT+GGG | + | chr5_1:38082508-38082527 | Msa0729980:intron | 35.0% |
| AGGTAATAGATTGTCGATGA+TGG | - | chr5_1:38082539-38082558 | None:intergenic | 35.0% | |
| CATCGACAATCTATTACCTT+CGG | + | chr5_1:38082540-38082559 | Msa0729980:intron | 35.0% | |
| TTTCATGGAAGGATCTTGAT+CGG | - | chr5_1:38082664-38082683 | None:intergenic | 35.0% | |
| GAATTCATCCTCATCATTCA+TGG | - | chr5_1:38082775-38082794 | None:intergenic | 35.0% | |
| ! | AGTTTCAAGTCATGTGTTTG+GGG | + | chr5_1:38082801-38082820 | Msa0729980:CDS | 35.0% |
| CAAGTCTCTTCAAACTCATT+TGG | - | chr5_1:38082837-38082856 | None:intergenic | 35.0% | |
| CAAATGAGTTTGAAGAGACT+TGG | + | chr5_1:38082835-38082854 | Msa0729980:CDS | 35.0% | |
| TAAGAAAGATGAAGATGGGA+TGG | + | chr5_1:38083250-38083269 | Msa0729980:CDS | 35.0% | |
| TTGCTCATGCAAAATGTTTC+AGG | + | chr5_1:38083355-38083374 | Msa0729980:intron | 35.0% | |
| ACACAAAGTATGTGTCTACA+AGG | - | chr5_1:38083392-38083411 | None:intergenic | 35.0% | |
| AACATGGAAAAACAGTTGGA+CGG | + | chr5_1:38083622-38083641 | Msa0729980:CDS | 35.0% | |
| AAGAATCAAATCATCTGTCC+TGG | - | chr5_1:38083671-38083690 | None:intergenic | 35.0% | |
| AGGACAGATGATTTGATTCT+TGG | + | chr5_1:38083670-38083689 | Msa0729980:CDS | 35.0% | |
| GGACAGATGATTTGATTCTT+GGG | + | chr5_1:38083671-38083690 | Msa0729980:CDS | 35.0% | |
| TTCTACTTCGTCAGGAATAT+TGG | - | chr5_1:38083698-38083717 | None:intergenic | 35.0% | |
| !! | TCTTTGCAAATTTTGGTGGA+AGG | - | chr5_1:38083723-38083742 | None:intergenic | 35.0% |
| TTTGCAAAGACTAAAGGTAG+TGG | + | chr5_1:38083733-38083752 | Msa0729980:CDS | 35.0% | |
| ! | GGTAGTGGTAAAAGAATCAA+AGG | + | chr5_1:38083748-38083767 | Msa0729980:CDS | 35.0% |
| AGTGGTAAAAGAATCAAAGG+TGG | + | chr5_1:38083751-38083770 | Msa0729980:CDS | 35.0% | |
| GCAATTATGGAGATGATCTT+TGG | - | chr5_1:38083869-38083888 | None:intergenic | 35.0% | |
| GTACTTGATGTTGTTAGGAT+TGG | + | chr5_1:38083980-38083999 | Msa0729980:intron | 35.0% | |
| TGTTGTTAGGATTGGAAGAA+TGG | + | chr5_1:38083988-38084007 | Msa0729980:intron | 35.0% | |
| GAAAAATACGCACTCTCTGT+CGG | + | chr5_1:38081829-38081848 | Msa0729980:CDS | 40.0% | |
| GGGTTATTTGCCGAATAAGA+AGG | + | chr5_1:38081930-38081949 | Msa0729980:CDS | 40.0% | |
| CTGTCAAGGTTAGAAGAAGA+AGG | + | chr5_1:38081977-38081996 | Msa0729980:CDS | 40.0% | |
| ! | AGAAGGGCTTTAACAAGAGA+AGG | + | chr5_1:38081994-38082013 | Msa0729980:CDS | 40.0% |
| !!! | TGTTGTTTTCAAATGGGTGG+GGG | + | chr5_1:38082029-38082048 | Msa0729980:CDS | 40.0% |
| GTGAAGCAAGTGGATATGTA+CGG | - | chr5_1:38082089-38082108 | None:intergenic | 40.0% | |
| CTTAGAAACGGTCTCTTCAT+AGG | - | chr5_1:38082111-38082130 | None:intergenic | 40.0% | |
| CTATGAAGAGACCGTTTCTA+AGG | + | chr5_1:38082109-38082128 | Msa0729980:CDS | 40.0% | |
| TTCCTTGCAGACCTTAGAAA+CGG | - | chr5_1:38082123-38082142 | None:intergenic | 40.0% | |
| !!! | GCCGATTGAAGCATGTTTTT+TGG | + | chr5_1:38082400-38082419 | Msa0729980:intron | 40.0% |
| TGAAACCACATCCCCAAATA+AGG | - | chr5_1:38082454-38082473 | None:intergenic | 40.0% | |
| TGATGGTTTATCCCAGTGAA+AGG | - | chr5_1:38082522-38082541 | None:intergenic | 40.0% | |
| !! | AAGTTTTTGGAAGCAATGGG+CGG | + | chr5_1:38082615-38082634 | Msa0729980:intron | 40.0% |
| TCAAGATCCTTCCATGAAAG+TGG | + | chr5_1:38082665-38082684 | Msa0729980:intron | 40.0% | |
| ! | TCTATAGCCACTTTCATGGA+AGG | - | chr5_1:38082675-38082694 | None:intergenic | 40.0% |
| CTACTCATAGATTGTGCATG+TGG | + | chr5_1:38082712-38082731 | Msa0729980:intron | 40.0% | |
| !! | TTCAAAGACACTTTTCTGGC+AGG | + | chr5_1:38082945-38082964 | Msa0729980:CDS | 40.0% |
| !! | TCAAAGACACTTTTCTGGCA+GGG | + | chr5_1:38082946-38082965 | Msa0729980:CDS | 40.0% |
| ! | AATAGAAGCGCAACGACATA+AGG | + | chr5_1:38083073-38083092 | Msa0729980:CDS | 40.0% |
| ! | CCACGTTCCAACAATAGTTT+TGG | - | chr5_1:38083134-38083153 | None:intergenic | 40.0% |
| CCAAAACTATTGTTGGAACG+TGG | + | chr5_1:38083131-38083150 | Msa0729980:CDS | 40.0% | |
| CAAGAGATGTGTATACTCGT+GGG | + | chr5_1:38083168-38083187 | Msa0729980:CDS | 40.0% | |
| ! | TGAATTATGGATTGCATGCG+TGG | + | chr5_1:38083211-38083230 | Msa0729980:CDS | 40.0% |
| TGCAAAATGTTTCAGGCTGA+AGG | + | chr5_1:38083362-38083381 | Msa0729980:intron | 40.0% | |
| CCACCTATTCACAATGTACT+TGG | - | chr5_1:38083443-38083462 | None:intergenic | 40.0% | |
| CCAAGTACATTGTGAATAGG+TGG | + | chr5_1:38083440-38083459 | Msa0729980:intron | 40.0% | |
| GCAAACTCATTTCTGATGTG+TGG | + | chr5_1:38083524-38083543 | Msa0729980:CDS | 40.0% | |
| GTTAAATGGGGCTGTTAACA+TGG | + | chr5_1:38083606-38083625 | Msa0729980:CDS | 40.0% | |
| ! | AAACAGTTGGACGGATTTGA+AGG | + | chr5_1:38083631-38083650 | Msa0729980:CDS | 40.0% |
| ! | AACAGTTGGACGGATTTGAA+GGG | + | chr5_1:38083632-38083651 | Msa0729980:CDS | 40.0% |
| ! | ATGATCTTTGGGGACAATTG+CGG | - | chr5_1:38083857-38083876 | None:intergenic | 40.0% |
| GGGATTTCTTACCGCAATTA+TGG | - | chr5_1:38083882-38083901 | None:intergenic | 40.0% | |
| TGGAAGAATGGCATAGAAGA+AGG | + | chr5_1:38084000-38084019 | Msa0729980:CDS | 40.0% | |
| ATGGCATAGAAGAAGGATGA+AGG | + | chr5_1:38084007-38084026 | Msa0729980:CDS | 40.0% | |
| GAAAAATACGCACTCTCTGT+CGG | + | chr5_1:38081829-38081848 | Msa0729980:CDS | 40.0% | |
| GGGTTATTTGCCGAATAAGA+AGG | + | chr5_1:38081930-38081949 | Msa0729980:CDS | 40.0% | |
| CTGTCAAGGTTAGAAGAAGA+AGG | + | chr5_1:38081977-38081996 | Msa0729980:CDS | 40.0% | |
| ! | AGAAGGGCTTTAACAAGAGA+AGG | + | chr5_1:38081994-38082013 | Msa0729980:CDS | 40.0% |
| !!! | TGTTGTTTTCAAATGGGTGG+GGG | + | chr5_1:38082029-38082048 | Msa0729980:CDS | 40.0% |
| GTGAAGCAAGTGGATATGTA+CGG | - | chr5_1:38082089-38082108 | None:intergenic | 40.0% | |
| CTTAGAAACGGTCTCTTCAT+AGG | - | chr5_1:38082111-38082130 | None:intergenic | 40.0% | |
| CTATGAAGAGACCGTTTCTA+AGG | + | chr5_1:38082109-38082128 | Msa0729980:CDS | 40.0% | |
| TTCCTTGCAGACCTTAGAAA+CGG | - | chr5_1:38082123-38082142 | None:intergenic | 40.0% | |
| !!! | GCCGATTGAAGCATGTTTTT+TGG | + | chr5_1:38082400-38082419 | Msa0729980:intron | 40.0% |
| TGAAACCACATCCCCAAATA+AGG | - | chr5_1:38082454-38082473 | None:intergenic | 40.0% | |
| TGATGGTTTATCCCAGTGAA+AGG | - | chr5_1:38082522-38082541 | None:intergenic | 40.0% | |
| !! | AAGTTTTTGGAAGCAATGGG+CGG | + | chr5_1:38082615-38082634 | Msa0729980:intron | 40.0% |
| TCAAGATCCTTCCATGAAAG+TGG | + | chr5_1:38082665-38082684 | Msa0729980:intron | 40.0% | |
| ! | TCTATAGCCACTTTCATGGA+AGG | - | chr5_1:38082675-38082694 | None:intergenic | 40.0% |
| CTACTCATAGATTGTGCATG+TGG | + | chr5_1:38082712-38082731 | Msa0729980:intron | 40.0% | |
| !! | TTCAAAGACACTTTTCTGGC+AGG | + | chr5_1:38082945-38082964 | Msa0729980:CDS | 40.0% |
| !! | TCAAAGACACTTTTCTGGCA+GGG | + | chr5_1:38082946-38082965 | Msa0729980:CDS | 40.0% |
| ! | AATAGAAGCGCAACGACATA+AGG | + | chr5_1:38083073-38083092 | Msa0729980:CDS | 40.0% |
| ! | CCACGTTCCAACAATAGTTT+TGG | - | chr5_1:38083134-38083153 | None:intergenic | 40.0% |
| CCAAAACTATTGTTGGAACG+TGG | + | chr5_1:38083131-38083150 | Msa0729980:CDS | 40.0% | |
| CAAGAGATGTGTATACTCGT+GGG | + | chr5_1:38083168-38083187 | Msa0729980:CDS | 40.0% | |
| ! | TGAATTATGGATTGCATGCG+TGG | + | chr5_1:38083211-38083230 | Msa0729980:CDS | 40.0% |
| TGCAAAATGTTTCAGGCTGA+AGG | + | chr5_1:38083362-38083381 | Msa0729980:intron | 40.0% | |
| CCACCTATTCACAATGTACT+TGG | - | chr5_1:38083443-38083462 | None:intergenic | 40.0% | |
| CCAAGTACATTGTGAATAGG+TGG | + | chr5_1:38083440-38083459 | Msa0729980:intron | 40.0% | |
| GCAAACTCATTTCTGATGTG+TGG | + | chr5_1:38083524-38083543 | Msa0729980:CDS | 40.0% | |
| GTTAAATGGGGCTGTTAACA+TGG | + | chr5_1:38083606-38083625 | Msa0729980:CDS | 40.0% | |
| ! | AAACAGTTGGACGGATTTGA+AGG | + | chr5_1:38083631-38083650 | Msa0729980:CDS | 40.0% |
| ! | AACAGTTGGACGGATTTGAA+GGG | + | chr5_1:38083632-38083651 | Msa0729980:CDS | 40.0% |
| ! | ATGATCTTTGGGGACAATTG+CGG | - | chr5_1:38083857-38083876 | None:intergenic | 40.0% |
| GGGATTTCTTACCGCAATTA+TGG | - | chr5_1:38083882-38083901 | None:intergenic | 40.0% | |
| TGGAAGAATGGCATAGAAGA+AGG | + | chr5_1:38084000-38084019 | Msa0729980:CDS | 40.0% | |
| ATGGCATAGAAGAAGGATGA+AGG | + | chr5_1:38084007-38084026 | Msa0729980:CDS | 40.0% | |
| AAAAAAACGGCGTGAAGCGT+TGG | + | chr5_1:38081884-38081903 | Msa0729980:CDS | 45.0% | |
| GCCGAATAAGAAGGATGGTA+AGG | + | chr5_1:38081939-38081958 | Msa0729980:CDS | 45.0% | |
| AAGGATGGTAAGGAGCAAAG+TGG | + | chr5_1:38081949-38081968 | Msa0729980:CDS | 45.0% | |
| AGGATGGTAAGGAGCAAAGT+GGG | + | chr5_1:38081950-38081969 | Msa0729980:CDS | 45.0% | |
| CTCTTCATAGGTGAAGCAAG+TGG | - | chr5_1:38082099-38082118 | None:intergenic | 45.0% | |
| CAATCTATTACCTTCGGCGT+AGG | + | chr5_1:38082546-38082565 | Msa0729980:intron | 45.0% | |
| TGTTATAAGTCCTACGCCGA+AGG | - | chr5_1:38082559-38082578 | None:intergenic | 45.0% | |
| CGGTGTTTCCATGAATGATG+AGG | + | chr5_1:38082764-38082783 | Msa0729980:CDS | 45.0% | |
| !! | CTTGGGCGTTTTTGATGACA+AGG | + | chr5_1:38082853-38082872 | Msa0729980:CDS | 45.0% |
| ! | TGTTTGAGATTCGAAGCACG+TGG | + | chr5_1:38082910-38082929 | Msa0729980:CDS | 45.0% |
| GCAAGAGATGTGTATACTCG+TGG | + | chr5_1:38083167-38083186 | Msa0729980:CDS | 45.0% | |
| GAACCACTTACATAGCTGTG+TGG | + | chr5_1:38083546-38083565 | Msa0729980:CDS | 45.0% | |
| TCTCCACACAGCTATGTAAG+TGG | - | chr5_1:38083552-38083571 | None:intergenic | 45.0% | |
| CTTACATAGCTGTGTGGAGA+AGG | + | chr5_1:38083552-38083571 | Msa0729980:CDS | 45.0% | |
| GGAGAAGGCTGGAAAAGATA+AGG | + | chr5_1:38083567-38083586 | Msa0729980:CDS | 45.0% | |
| !! | AAGGGAGTTCTAAGAGAACC+AGG | + | chr5_1:38083650-38083669 | Msa0729980:CDS | 45.0% |
| GGAAGGATTTCTACTTCGTC+AGG | - | chr5_1:38083706-38083725 | None:intergenic | 45.0% | |
| GCAAGACTTTGTAAGGCATG+CGG | + | chr5_1:38083810-38083829 | Msa0729980:CDS | 45.0% | |
| AAAAAAACGGCGTGAAGCGT+TGG | + | chr5_1:38081884-38081903 | Msa0729980:CDS | 45.0% | |
| GCCGAATAAGAAGGATGGTA+AGG | + | chr5_1:38081939-38081958 | Msa0729980:CDS | 45.0% | |
| AAGGATGGTAAGGAGCAAAG+TGG | + | chr5_1:38081949-38081968 | Msa0729980:CDS | 45.0% | |
| AGGATGGTAAGGAGCAAAGT+GGG | + | chr5_1:38081950-38081969 | Msa0729980:CDS | 45.0% | |
| CTCTTCATAGGTGAAGCAAG+TGG | - | chr5_1:38082099-38082118 | None:intergenic | 45.0% | |
| CAATCTATTACCTTCGGCGT+AGG | + | chr5_1:38082546-38082565 | Msa0729980:intron | 45.0% | |
| TGTTATAAGTCCTACGCCGA+AGG | - | chr5_1:38082559-38082578 | None:intergenic | 45.0% | |
| CGGTGTTTCCATGAATGATG+AGG | + | chr5_1:38082764-38082783 | Msa0729980:CDS | 45.0% | |
| !! | CTTGGGCGTTTTTGATGACA+AGG | + | chr5_1:38082853-38082872 | Msa0729980:CDS | 45.0% |
| ! | TGTTTGAGATTCGAAGCACG+TGG | + | chr5_1:38082910-38082929 | Msa0729980:CDS | 45.0% |
| GCAAGAGATGTGTATACTCG+TGG | + | chr5_1:38083167-38083186 | Msa0729980:CDS | 45.0% | |
| GAACCACTTACATAGCTGTG+TGG | + | chr5_1:38083546-38083565 | Msa0729980:CDS | 45.0% | |
| TCTCCACACAGCTATGTAAG+TGG | - | chr5_1:38083552-38083571 | None:intergenic | 45.0% | |
| CTTACATAGCTGTGTGGAGA+AGG | + | chr5_1:38083552-38083571 | Msa0729980:CDS | 45.0% | |
| GGAGAAGGCTGGAAAAGATA+AGG | + | chr5_1:38083567-38083586 | Msa0729980:CDS | 45.0% | |
| !! | AAGGGAGTTCTAAGAGAACC+AGG | + | chr5_1:38083650-38083669 | Msa0729980:CDS | 45.0% |
| GGAAGGATTTCTACTTCGTC+AGG | - | chr5_1:38083706-38083725 | None:intergenic | 45.0% | |
| GCAAGACTTTGTAAGGCATG+CGG | + | chr5_1:38083810-38083829 | Msa0729980:CDS | 45.0% | |
| GCAAAGTGGGTCTACTGTCA+AGG | + | chr5_1:38081963-38081982 | Msa0729980:CDS | 50.0% | |
| ! | GTTTTCAAATGGGTGGGGGA+AGG | + | chr5_1:38082033-38082052 | Msa0729980:CDS | 50.0% |
| !! | GACCGTTTCTAAGGTCTGCA+AGG | + | chr5_1:38082118-38082137 | Msa0729980:intron | 50.0% |
| GCGTATGAGGTAGGTGAAGA+AGG | + | chr5_1:38082378-38082397 | Msa0729980:intron | 50.0% | |
| ! | TGTTGGAACGTGGTATCGAG+AGG | + | chr5_1:38083141-38083160 | Msa0729980:CDS | 50.0% |
| ! | TGGATTGCATGCGTGGATTG+TGG | + | chr5_1:38083218-38083237 | Msa0729980:CDS | 50.0% |
| ! | GGATTGCATGCGTGGATTGT+GGG | + | chr5_1:38083219-38083238 | Msa0729980:CDS | 50.0% |
| GCAAAGTGGGTCTACTGTCA+AGG | + | chr5_1:38081963-38081982 | Msa0729980:CDS | 50.0% | |
| ! | GTTTTCAAATGGGTGGGGGA+AGG | + | chr5_1:38082033-38082052 | Msa0729980:CDS | 50.0% |
| !! | GACCGTTTCTAAGGTCTGCA+AGG | + | chr5_1:38082118-38082137 | Msa0729980:intron | 50.0% |
| GCGTATGAGGTAGGTGAAGA+AGG | + | chr5_1:38082378-38082397 | Msa0729980:intron | 50.0% | |
| ! | TGTTGGAACGTGGTATCGAG+AGG | + | chr5_1:38083141-38083160 | Msa0729980:CDS | 50.0% |
| ! | TGGATTGCATGCGTGGATTG+TGG | + | chr5_1:38083218-38083237 | Msa0729980:CDS | 50.0% |
| ! | GGATTGCATGCGTGGATTGT+GGG | + | chr5_1:38083219-38083238 | Msa0729980:CDS | 50.0% |
| CATAGCTGTGTGGAGAAGGC+TGG | + | chr5_1:38083556-38083575 | Msa0729980:CDS | 55.0% | |
| CATAGCTGTGTGGAGAAGGC+TGG | + | chr5_1:38083556-38083575 | Msa0729980:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 38081739 | 38084049 | 38081739 | ID=Msa0729980;Name=Msa0729980 |
| chr5_1 | mRNA | 38081739 | 38084049 | 38081739 | ID=Msa0729980-mRNA-1;Parent=Msa0729980;Name=Msa0729980-mRNA-1;_AED=0.21;_eAED=0.26;_QI=0|0|0|0.75|0.66|0.75|4|0|507 |
| chr5_1 | exon | 38081739 | 38082130 | 38081739 | ID=Msa0729980-mRNA-1:exon:11480;Parent=Msa0729980-mRNA-1 |
| chr5_1 | exon | 38082722 | 38083369 | 38082722 | ID=Msa0729980-mRNA-1:exon:11481;Parent=Msa0729980-mRNA-1 |
| chr5_1 | exon | 38083459 | 38083889 | 38083459 | ID=Msa0729980-mRNA-1:exon:11482;Parent=Msa0729980-mRNA-1 |
| chr5_1 | exon | 38083997 | 38084049 | 38083997 | ID=Msa0729980-mRNA-1:exon:11483;Parent=Msa0729980-mRNA-1 |
| chr5_1 | CDS | 38081739 | 38082130 | 38081739 | ID=Msa0729980-mRNA-1:cds;Parent=Msa0729980-mRNA-1 |
| chr5_1 | CDS | 38082722 | 38083369 | 38082722 | ID=Msa0729980-mRNA-1:cds;Parent=Msa0729980-mRNA-1 |
| chr5_1 | CDS | 38083459 | 38083889 | 38083459 | ID=Msa0729980-mRNA-1:cds;Parent=Msa0729980-mRNA-1 |
| chr5_1 | CDS | 38083997 | 38084049 | 38083997 | ID=Msa0729980-mRNA-1:cds;Parent=Msa0729980-mRNA-1 |
| Gene Sequence |
| Protein sequence |
