AlfalfaGEDB | Msa0730700

M. sativa cultivar zhongmu-4 / Msa0730700

KEGG: K13414|K20605
GO: GO:0000165 GO:0000186 GO:0001101 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004672 GO:0004674 GO:0004709 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005768 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007584 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009611 GO:0009628 GO:0009631 GO:0009651 GO:0009888 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0009991 GO:0010033 GO:0010243 GO:0010449 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0012505 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0019899 GO:0019900 GO:0022622 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031347 GO:0031399 GO:0031401 GO:0031410 GO:0031667 GO:0031982 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035266 GO:0035556 GO:0036211 GO:0040007 GO:0042221 GO:0042325 GO:0042327 GO:0042493 GO:0043085 GO:0043170 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0045859 GO:0045860 GO:0045937 GO:0046777 GO:0048364 GO:0048507 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051716 GO:0051726 GO:0060255 GO:0065007 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0080134 GO:0097159 GO:0097708 GO:0099402 GO:0140096 GO:1901363 GO:1901564 GO:1901698 GO:1901700 GO:1902065 GO:1902531 GO:1902533
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730700	XP_003614827.1	87.179	195	20	2	1	191	103	296	8.26e-115	342

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730700	sp\|Q39008\|M3K1_ARATH	67.665	167	50	1	29	191	332	498	2.55e-72	232

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730700	G7K916	87.179	195	20	2	1	191	103	296	3.95e-115	342

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730700	MtrunA17_Chr5g0424501	81.538	195	32	1	1	191	163	357	5.23e-109	319
Msa0730700	MtrunA17_Chr5g0424581	84.783	184	24	1	12	191	107	290	1.03e-106	311
Msa0730700	MtrunA17_Chr5g0424651	84.783	184	24	1	12	191	303	486	5.21e-105	313
Msa0730700	MtrunA17_Chr5g0424531	95.890	146	6	0	46	191	36	181	1.02e-99	290
Msa0730700	MtrunA17_Chr3g0115171	73.913	184	44	1	12	191	265	448	3.13e-88	269
Msa0730700	MtrunA17_Chr4g0051191	66.071	168	52	2	29	191	162	329	5.33e-72	224
Msa0730700	MtrunA17_Chr8g0386981	44.565	184	92	5	17	191	394	576	1.40e-40	145
Msa0730700	MtrunA17_Chr8g0384301	42.246	187	96	5	16	191	282	467	2.15e-38	139
Msa0730700	MtrunA17_Chr3g0130151	40.957	188	97	5	17	191	226	412	1.90e-37	136
Msa0730700	MtrunA17_Chr1g0202831	42.697	178	93	4	22	191	403	579	2.14e-37	137

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0730700	AT4G08500.1	67.665	167	50	1	29	191	332	498	2.59e-73	232
Msa0730700	AT4G08470.2	56.771	192	77	2	4	191	279	468	1.17e-67	214
Msa0730700	AT4G08480.1	59.259	189	66	3	12	191	480	666	5.38e-67	218
Msa0730700	AT4G08470.1	56.771	192	77	2	4	191	279	468	9.17e-67	214
Msa0730700	AT4G08470.3	61.677	167	60	1	29	191	220	386	2.51e-66	211
Msa0730700	AT4G12020.2	60.241	166	58	2	30	191	1626	1787	3.14e-55	188
Msa0730700	AT4G12020.1	60.241	166	58	2	30	191	1626	1787	3.15e-55	188
Msa0730700	AT4G12020.9	60.241	166	58	2	30	191	1626	1787	3.15e-55	188
Msa0730700	AT4G12020.7	60.241	166	58	2	30	191	1618	1779	3.18e-55	188
Msa0730700	AT4G12020.4	60.241	166	58	2	30	191	1618	1779	3.42e-55	188

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Find 39 sgRNAs with CRISPR-Local

Find 588 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGCTTCATTGCTTGATCAA+GGG	0.534439	5_1:+40497515	Msa0730700:CDS
AATATATTGGTTGATGCAAA+TGG	0.447007	5_1:+40499420	Msa0730700:CDS
AATCTTGAAGTTTATACCTC+TGG	0.434896	5_1:-40498604	None:intergenic
AATGATGTTAAATCATGCCA+GGG	0.632428	5_1:+40499594	Msa0730700:CDS
ACCTCTGGTAGAGGCGTAAA+AGG	0.188896	5_1:-40498589	None:intergenic
ACCTTTGGATTTGTATATGA+AGG	0.414129	5_1:+40490825	Msa0730700:CDS
ACTCCTGGGAGTTGGCAAAA+GGG	0.553126	5_1:+40490799	Msa0730700:CDS
ATGATCGCAATATTGTTCAC+AGG	0.557105	5_1:+40498678	Msa0730700:CDS
ATTGCTTGATCAAGGGATTC+GGG	0.423217	5_1:+40497522	Msa0730700:CDS
CAACTCCCAGGAGTAATAAC+TGG	0.433358	5_1:-40490790	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCTTTGGATTTGTATATGA+AGG	+	chr5_1:40490825-40490844	Msa0730700:CDS	30.0%
TCCTTCATATACAAATCCAA+AGG	-	chr5_1:40490829-40490848	None:intergenic	30.0%
GAGAAAAGACAAAAGTAAAG+AGG	-	chr5_1:40490871-40490890	None:intergenic	30.0%
AAAGTAACTGCTATTGGAAA+AGG	+	chr5_1:40491242-40491261	Msa0730700:intron	30.0%
TATGAAAAAAAGGGTTTGCA+AGG	-	chr5_1:40491468-40491487	None:intergenic	30.0%
AGAAACAAAAGTTTAACCGA+CGG	-	chr5_1:40491790-40491809	None:intergenic	30.0%
ATTTCCACAAGCTATATGAA+TGG	+	chr5_1:40491850-40491869	Msa0730700:intron	30.0%
TTTCTTCGGCTATATATGTT+TGG	-	chr5_1:40491955-40491974	None:intergenic	30.0%
TAGGATACTATAGTCGTTAT+GGG	-	chr5_1:40492261-40492280	None:intergenic	30.0%
ATAGGATACTATAGTCGTTA+TGG	-	chr5_1:40492262-40492281	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	40490724	40499638	40490724	ID=Msa0730700;Name=Msa0730700
chr5_1	mRNA	40490724	40499638	40490724	ID=Msa0730700-mRNA-1;Parent=Msa0730700;Name=Msa0730700-mRNA-1;_AED=0.21;_eAED=0.23;_QI=0\|0.2\|0\|1\|0.8\|0.5\|6\|0\|191
chr5_1	exon	40490724	40490860	40490724	ID=Msa0730700-mRNA-1:exon:11803;Parent=Msa0730700-mRNA-1
chr5_1	exon	40497489	40497573	40497489	ID=Msa0730700-mRNA-1:exon:11804;Parent=Msa0730700-mRNA-1
chr5_1	exon	40497801	40497863	40497801	ID=Msa0730700-mRNA-1:exon:11805;Parent=Msa0730700-mRNA-1
chr5_1	exon	40498542	40498699	40498542	ID=Msa0730700-mRNA-1:exon:11806;Parent=Msa0730700-mRNA-1
chr5_1	exon	40499404	40499476	40499404	ID=Msa0730700-mRNA-1:exon:11807;Parent=Msa0730700-mRNA-1
chr5_1	exon	40499582	40499638	40499582	ID=Msa0730700-mRNA-1:exon:11808;Parent=Msa0730700-mRNA-1
chr5_1	CDS	40490724	40490860	40490724	ID=Msa0730700-mRNA-1:cds;Parent=Msa0730700-mRNA-1
chr5_1	CDS	40497489	40497573	40497489	ID=Msa0730700-mRNA-1:cds;Parent=Msa0730700-mRNA-1
chr5_1	CDS	40497801	40497863	40497801	ID=Msa0730700-mRNA-1:cds;Parent=Msa0730700-mRNA-1
chr5_1	CDS	40498542	40498699	40498542	ID=Msa0730700-mRNA-1:cds;Parent=Msa0730700-mRNA-1
chr5_1	CDS	40499404	40499476	40499404	ID=Msa0730700-mRNA-1:cds;Parent=Msa0730700-mRNA-1
chr5_1	CDS	40499582	40499638	40499582	ID=Msa0730700-mRNA-1:cds;Parent=Msa0730700-mRNA-1

Gene Sequence

>Msa0730700

GGTGAAGTTGTAAACCAAAGGGAGGATACTTGCTCAAATTGTATACTTTCTAATGTGAGATTGAATCCAGTTATTACTCCTGGGAGTTGGCAAAAGGGTGAACCTTTGGATTTGTATATGAAGGAATTTCTGAGTAAAGATGGACTCTTTTTTGCTGTAAAACAAGCTTCATTGCTTGATCAAGGGATTCGGGGAAAGCAAAGTGTTGTTCAATTAGAGCATGAAATTGCACTTCTGAGTCAGTTTGAACATGAGAATATTGTTCGATACATTGGCACTGAAATGGATGAATCAAATCTATATATCTTTATTGAGTTGGTAACCAAAGGTTCCCTTTTACGCCTCTACCAGAGGTATAAACTTCAAGATTCCCAAGTATCTGCTTACACGAGACAGATTCTGCATGGTTTGAAGTATCTTCATGATCGCAATATTGTTCACAGGGACATTAAATGTGCAAATATATTGGTTGATGCAAATGGATCTGTCAAAGTTGCAGATTTTGGATTGGCAAAGGTAACTATACTGAATGATGTTAAATCATGCCAGGGAACAGCATTCTGGATGGCACCT

Protein sequence

>Msa0730700

GEVVNQREDTCSNCILSNVRLNPVITPGSWQKGEPLDLYMKEFLSKDGLFFAVKQASLLDQGIRGKQSVVQLEHEIALLSQFEHENIVRYIGTEMDESNLYIFIELVTKGSLLRLYQRYKLQDSQVSAYTRQILHGLKYLHDRNIVHRDIKCANILVDANGSVKVADFGLAKVTILNDVKSCQGTAFWMAP