Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0730750 | XP_003614872.1 | 91.212 | 330 | 26 | 1 | 1 | 327 | 1 | 330 | 0.0 | 618 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0730750 | sp|Q84WU6|ARFQ_ARATH | 35.775 | 355 | 157 | 9 | 7 | 324 | 14 | 334 | 1.27e-58 | 201 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0730750 | G7K9Y1 | 91.212 | 330 | 26 | 1 | 1 | 327 | 1 | 330 | 0.0 | 618 |
Gene ID | Type | Classification |
---|---|---|
Msa0730750 | TF | B3-ARF |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0730750 | MtrunA17_Chr5g0424741 | 91.212 | 330 | 26 | 1 | 1 | 327 | 1 | 330 | 0.0 | 618 |
Msa0730750 | MtrunA17_Chr5g0424931 | 51.977 | 354 | 113 | 5 | 1 | 327 | 8 | 331 | 1.85e-114 | 341 |
Msa0730750 | MtrunA17_Chr5g0424801 | 57.143 | 329 | 105 | 7 | 1 | 327 | 1 | 295 | 6.86e-110 | 324 |
Msa0730750 | MtrunA17_Chr5g0425261 | 57.447 | 329 | 104 | 7 | 1 | 327 | 1 | 295 | 3.15e-109 | 323 |
Msa0730750 | MtrunA17_Chr1g0178011 | 53.776 | 331 | 119 | 5 | 1 | 327 | 1 | 301 | 3.63e-108 | 323 |
Msa0730750 | MtrunA17_Chr2g0289221 | 48.457 | 324 | 122 | 10 | 1 | 315 | 9 | 296 | 5.10e-84 | 258 |
Msa0730750 | MtrunA17_Chr5g0417281 | 47.205 | 322 | 130 | 7 | 5 | 320 | 4 | 291 | 8.37e-83 | 260 |
Msa0730750 | MtrunA17_Chr5g0417211 | 48.615 | 325 | 122 | 8 | 1 | 316 | 1 | 289 | 1.70e-80 | 250 |
Msa0730750 | MtrunA17_Chr2g0277461 | 45.092 | 326 | 134 | 10 | 1 | 314 | 1 | 293 | 6.14e-77 | 243 |
Msa0730750 | MtrunA17_Chr5g0436761 | 42.813 | 327 | 143 | 7 | 5 | 322 | 5 | 296 | 1.03e-76 | 242 |
Msa0730750 | MtrunA17_Chr2g0277531 | 43.438 | 320 | 132 | 10 | 6 | 314 | 14 | 295 | 1.07e-76 | 238 |
Msa0730750 | MtrunA17_Chr5g0425661 | 55.357 | 224 | 67 | 7 | 9 | 228 | 34 | 228 | 2.40e-68 | 213 |
Msa0730750 | MtrunA17_Chr3g0115271 | 35.912 | 362 | 158 | 10 | 4 | 324 | 8 | 336 | 3.18e-57 | 194 |
Msa0730750 | MtrunA17_Chr2g0326761 | 32.394 | 355 | 160 | 8 | 7 | 316 | 6 | 325 | 7.93e-49 | 173 |
Msa0730750 | MtrunA17_Chr1g0181211 | 32.865 | 356 | 165 | 9 | 7 | 316 | 22 | 349 | 1.69e-46 | 167 |
Msa0730750 | MtrunA17_Chr4g0028971 | 30.495 | 364 | 173 | 6 | 1 | 316 | 1 | 332 | 3.62e-42 | 155 |
Msa0730750 | MtrunA17_Chr1g0199681 | 31.124 | 347 | 170 | 9 | 9 | 316 | 91 | 407 | 4.22e-42 | 155 |
Msa0730750 | MtrunA17_Chr4g0009751 | 31.348 | 319 | 183 | 8 | 10 | 322 | 17 | 305 | 4.42e-40 | 148 |
Msa0730750 | MtrunA17_Chr2g0301251 | 30.189 | 318 | 187 | 7 | 5 | 315 | 16 | 305 | 6.56e-40 | 149 |
Msa0730750 | MtrunA17_Chr2g0282961 | 30.769 | 325 | 183 | 8 | 3 | 315 | 44 | 338 | 7.96e-38 | 142 |
Msa0730750 | MtrunA17_Chr4g0070181 | 29.052 | 327 | 179 | 7 | 5 | 315 | 16 | 305 | 1.91e-37 | 142 |
Msa0730750 | MtrunA17_Chr7g0264161 | 32.343 | 303 | 165 | 9 | 22 | 316 | 2 | 272 | 8.16e-37 | 134 |
Msa0730750 | MtrunA17_Chr7g0239061 | 28.349 | 321 | 186 | 8 | 12 | 322 | 14 | 300 | 1.40e-36 | 139 |
Msa0730750 | MtrunA17_Chr7g0264171 | 29.086 | 361 | 176 | 11 | 7 | 316 | 26 | 357 | 1.88e-36 | 138 |
Msa0730750 | MtrunA17_Chr2g0276781 | 30.449 | 312 | 175 | 8 | 12 | 313 | 23 | 302 | 5.80e-36 | 137 |
Msa0730750 | MtrunA17_Chr4g0046371 | 29.487 | 312 | 191 | 7 | 12 | 315 | 38 | 328 | 9.61e-36 | 137 |
Msa0730750 | MtrunA17_Chr8g0376771 | 28.963 | 328 | 191 | 7 | 5 | 322 | 16 | 311 | 2.82e-35 | 135 |
Msa0730750 | MtrunA17_Chr1g0156321 | 32.051 | 312 | 168 | 10 | 7 | 304 | 38 | 319 | 5.01e-35 | 135 |
Msa0730750 | MtrunA17_Chr3g0109391 | 28.793 | 323 | 191 | 9 | 9 | 322 | 23 | 315 | 1.36e-34 | 134 |
Msa0730750 | MtrunA17_Chr2g0285461 | 29.573 | 328 | 190 | 8 | 5 | 322 | 16 | 312 | 1.72e-34 | 133 |
Msa0730750 | MtrunA17_Chr5g0433301 | 29.573 | 328 | 190 | 8 | 5 | 322 | 17 | 313 | 1.89e-34 | 133 |
Msa0730750 | MtrunA17_Chr5g0424791 | 47.953 | 171 | 56 | 3 | 63 | 233 | 14 | 151 | 2.85e-34 | 123 |
Msa0730750 | MtrunA17_Chr8g0346711 | 29.582 | 311 | 182 | 7 | 12 | 315 | 29 | 309 | 8.80e-34 | 131 |
Msa0730750 | MtrunA17_Chr2g0326281 | 29.080 | 337 | 174 | 10 | 12 | 315 | 56 | 360 | 1.23e-33 | 131 |
Msa0730750 | MtrunA17_Chr4g0029671 | 30.000 | 320 | 180 | 9 | 12 | 315 | 54 | 345 | 3.22e-33 | 129 |
Msa0730750 | MtrunA17_Chr8g0389081 | 29.193 | 322 | 191 | 8 | 9 | 322 | 29 | 321 | 2.06e-32 | 127 |
Msa0730750 | MtrunA17_Chr8g0385791 | 29.167 | 312 | 174 | 9 | 12 | 310 | 59 | 336 | 2.59e-32 | 127 |
Msa0730750 | MtrunA17_Chr5g0425651 | 59.420 | 69 | 28 | 0 | 261 | 329 | 2 | 70 | 8.16e-22 | 89.4 |
Msa0730750 | MtrunA17_Chr8g0356211 | 27.219 | 169 | 114 | 4 | 147 | 308 | 2 | 168 | 5.01e-15 | 74.7 |
Msa0730750 | MtrunA17_Chr5g0419861 | 34.783 | 138 | 60 | 4 | 50 | 185 | 12 | 121 | 6.17e-14 | 67.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0730750 | AT1G77850.1 | 35.775 | 355 | 157 | 9 | 7 | 324 | 14 | 334 | 1.29e-59 | 201 |
Msa0730750 | AT1G77850.2 | 35.775 | 355 | 157 | 9 | 7 | 324 | 14 | 334 | 1.72e-59 | 201 |
Msa0730750 | AT4G30080.1 | 31.503 | 346 | 171 | 7 | 9 | 316 | 16 | 333 | 9.88e-44 | 159 |
Msa0730750 | AT2G28350.1 | 31.549 | 355 | 178 | 8 | 3 | 316 | 1 | 331 | 1.72e-43 | 159 |
Msa0730750 | AT2G28350.2 | 31.549 | 355 | 178 | 8 | 3 | 316 | 1 | 331 | 1.86e-43 | 159 |
Msa0730750 | AT2G33860.1 | 32.581 | 310 | 179 | 8 | 12 | 315 | 54 | 339 | 2.36e-41 | 152 |
Msa0730750 | AT4G23980.2 | 30.868 | 311 | 179 | 7 | 12 | 315 | 12 | 293 | 3.70e-41 | 152 |
Msa0730750 | AT4G23980.1 | 30.868 | 311 | 179 | 7 | 12 | 315 | 12 | 293 | 3.99e-41 | 152 |
Msa0730750 | AT2G46530.1 | 30.128 | 312 | 181 | 6 | 11 | 315 | 20 | 301 | 8.98e-41 | 150 |
Msa0730750 | AT2G46530.3 | 30.128 | 312 | 181 | 6 | 11 | 315 | 41 | 322 | 1.40e-40 | 150 |
Msa0730750 | AT5G20730.2 | 30.547 | 311 | 181 | 7 | 5 | 308 | 17 | 299 | 4.54e-37 | 141 |
Msa0730750 | AT3G61830.1 | 29.808 | 312 | 182 | 8 | 11 | 315 | 24 | 305 | 5.90e-37 | 140 |
Msa0730750 | AT1G19220.1 | 28.939 | 311 | 186 | 6 | 5 | 308 | 16 | 298 | 8.50e-37 | 140 |
Msa0730750 | AT5G37020.2 | 29.412 | 323 | 189 | 9 | 9 | 322 | 19 | 311 | 1.79e-36 | 139 |
Msa0730750 | AT5G37020.1 | 29.412 | 323 | 189 | 9 | 9 | 322 | 19 | 311 | 2.03e-36 | 139 |
Msa0730750 | AT1G30330.1 | 30.183 | 328 | 188 | 8 | 5 | 322 | 16 | 312 | 3.04e-36 | 139 |
Msa0730750 | AT1G30330.3 | 30.183 | 328 | 188 | 8 | 5 | 322 | 18 | 314 | 3.05e-36 | 139 |
Msa0730750 | AT1G30330.2 | 30.183 | 328 | 188 | 8 | 5 | 322 | 18 | 314 | 3.05e-36 | 139 |
Msa0730750 | AT5G20730.3 | 30.573 | 314 | 178 | 9 | 5 | 308 | 17 | 300 | 5.51e-36 | 138 |
Msa0730750 | AT5G20730.1 | 30.573 | 314 | 178 | 9 | 5 | 308 | 17 | 300 | 6.14e-36 | 138 |
Msa0730750 | AT5G62000.2 | 29.904 | 311 | 173 | 8 | 12 | 310 | 61 | 338 | 7.53e-36 | 138 |
Msa0730750 | AT5G62000.5 | 29.904 | 311 | 173 | 8 | 12 | 310 | 61 | 338 | 7.53e-36 | 138 |
Msa0730750 | AT5G62000.3 | 29.904 | 311 | 173 | 8 | 12 | 310 | 61 | 338 | 7.53e-36 | 138 |
Msa0730750 | AT5G62000.1 | 29.904 | 311 | 173 | 8 | 12 | 310 | 61 | 338 | 7.53e-36 | 138 |
Msa0730750 | AT5G62000.4 | 29.904 | 311 | 173 | 8 | 12 | 310 | 61 | 338 | 8.98e-36 | 137 |
Msa0730750 | AT1G34310.1 | 29.560 | 318 | 183 | 7 | 9 | 319 | 24 | 307 | 3.75e-35 | 135 |
Msa0730750 | AT1G34390.1 | 28.391 | 317 | 186 | 7 | 12 | 323 | 27 | 307 | 4.25e-35 | 134 |
Msa0730750 | AT1G59750.2 | 29.739 | 306 | 179 | 7 | 12 | 310 | 22 | 298 | 8.83e-35 | 134 |
Msa0730750 | AT1G59750.4 | 29.739 | 306 | 179 | 7 | 12 | 310 | 22 | 298 | 8.84e-35 | 134 |
Msa0730750 | AT1G59750.1 | 29.739 | 306 | 179 | 7 | 12 | 310 | 22 | 298 | 9.30e-35 | 134 |
Msa0730750 | AT1G59750.3 | 29.739 | 306 | 179 | 7 | 12 | 310 | 22 | 298 | 9.30e-35 | 134 |
Msa0730750 | AT5G60450.2 | 28.435 | 313 | 195 | 6 | 11 | 315 | 40 | 331 | 6.01e-33 | 129 |
Msa0730750 | AT5G60450.1 | 28.435 | 313 | 195 | 6 | 11 | 315 | 64 | 355 | 6.73e-33 | 129 |
Msa0730750 | AT1G19850.2 | 29.003 | 331 | 180 | 10 | 9 | 322 | 40 | 332 | 3.95e-32 | 127 |
Msa0730750 | AT1G19850.1 | 29.003 | 331 | 180 | 10 | 9 | 322 | 51 | 343 | 4.04e-32 | 127 |
Msa0730750 | AT1G35240.1 | 27.812 | 320 | 180 | 8 | 12 | 319 | 27 | 307 | 8.41e-32 | 125 |
Msa0730750 | AT1G34410.1 | 27.937 | 315 | 186 | 8 | 12 | 319 | 27 | 307 | 2.98e-31 | 124 |
Msa0730750 | AT1G35520.1 | 28.571 | 315 | 184 | 8 | 12 | 319 | 27 | 307 | 8.79e-31 | 122 |
Msa0730750 | AT1G35540.1 | 27.187 | 320 | 182 | 8 | 12 | 319 | 27 | 307 | 9.20e-31 | 122 |
Msa0730750 | AT1G34170.1 | 30.650 | 323 | 173 | 11 | 12 | 322 | 25 | 308 | 8.25e-29 | 116 |
Msa0730750 | AT1G43950.1 | 32.900 | 231 | 114 | 9 | 12 | 236 | 27 | 222 | 1.79e-28 | 110 |
Msa0730750 | AT1G34170.2 | 31.786 | 280 | 144 | 9 | 12 | 279 | 25 | 269 | 2.65e-26 | 108 |
Msa0730750 | AT1G34170.3 | 31.786 | 280 | 144 | 9 | 12 | 279 | 25 | 269 | 2.70e-26 | 109 |
Msa0730750 | AT2G33860.2 | 32.597 | 181 | 116 | 4 | 141 | 315 | 2 | 182 | 3.41e-24 | 102 |
Msa0730750 | AT3G61830.2 | 29.008 | 262 | 152 | 6 | 58 | 315 | 23 | 254 | 5.19e-24 | 102 |
Msa0730750 | AT2G46530.2 | 32.240 | 183 | 119 | 3 | 137 | 315 | 33 | 214 | 6.24e-21 | 93.6 |
Msa0730750 | AT5G37020.3 | 30.319 | 188 | 123 | 5 | 141 | 322 | 31 | 216 | 4.42e-19 | 88.6 |
Find 98 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTTCCATTGTTCTCTTCT+TGG | 0.145313 | 5_1:-40657306 | None:intergenic |
ATGAAGAATGGTTGGGAATT+TGG | 0.146103 | 5_1:+40657874 | Msa0730750:CDS |
GGCGCATATTTGCCATATTT+TGG | 0.204114 | 5_1:-40657020 | None:intergenic |
CCGCCTTCCTCTTCAGTTGT+AGG | 0.235630 | 5_1:-40657712 | None:intergenic |
GCATGTTCCAAGTGGCCTTC+TGG | 0.242565 | 5_1:-40657091 | None:intergenic |
CATCTCATCTGTTGATCTTC+TGG | 0.269531 | 5_1:+40657180 | Msa0730750:CDS |
TGTTAGAGATTGTCCCCTTT+TGG | 0.278833 | 5_1:-40657961 | None:intergenic |
AGGAGCTGTGTTTCAATGTT+AGG | 0.289094 | 5_1:-40657124 | None:intergenic |
GAGGAGCTGGTTCTTGGATT+TGG | 0.300688 | 5_1:-40657270 | None:intergenic |
CCTCAGGAGGAGGTGGTTCT+TGG | 0.301792 | 5_1:-40657345 | None:intergenic |
TGTATTATCCGAAGGATAAT+TGG | 0.314896 | 5_1:+40657812 | Msa0730750:CDS |
AGTCAGGAGGAGCTGGTTCT+TGG | 0.317855 | 5_1:-40657276 | None:intergenic |
CATGTTCCAAGTGGCCTTCT+GGG | 0.356154 | 5_1:-40657090 | None:intergenic |
AAGAAACTCAGGTTTACTTC+TGG | 0.365878 | 5_1:+40657580 | Msa0730750:CDS |
CGCCTTCCTCTTCAGTTGTA+GGG | 0.385926 | 5_1:-40657711 | None:intergenic |
AATTCCGACAAATATCTTTC+CGG | 0.399060 | 5_1:-40657671 | None:intergenic |
GAGTCCACACGGCGTGGCTC+AGG | 0.410289 | 5_1:-40656998 | None:intergenic |
CTGAAGAGGAAGGCGGGAAA+AGG | 0.410319 | 5_1:+40657719 | Msa0730750:CDS |
GCTATCATCGTCTTCTTCAT+CGG | 0.416752 | 5_1:-40657371 | None:intergenic |
TCTTCTTGGTCGCGAAAGTC+AGG | 0.417696 | 5_1:-40657292 | None:intergenic |
GCTGTCAAGATTCCGAAGAT+TGG | 0.424603 | 5_1:+40657049 | Msa0730750:CDS |
GGAGCTGTGTTTCAATGTTA+GGG | 0.425269 | 5_1:-40657123 | None:intergenic |
CTATCATCGTCTTCTTCATC+GGG | 0.426116 | 5_1:-40657370 | None:intergenic |
CTTTCCGAATCTTGACTTGG+AGG | 0.428364 | 5_1:+40657480 | Msa0730750:CDS |
CGGAATCTTGACAGCAGGTC+CGG | 0.431910 | 5_1:-40657041 | None:intergenic |
GAGGAGGTGGTTCTTGGACT+TGG | 0.434719 | 5_1:-40657339 | None:intergenic |
AAGACATATTATCAGCCAAA+AGG | 0.436196 | 5_1:+40657946 | Msa0730750:CDS |
GCCGTGTGGACTCCAAAATA+TGG | 0.441140 | 5_1:+40657008 | Msa0730750:CDS |
AGTTAAAGATGCTGTGGAAT+TGG | 0.445090 | 5_1:+40657762 | Msa0730750:CDS |
AGACATATTATCAGCCAAAA+GGG | 0.447654 | 5_1:+40657947 | Msa0730750:CDS |
CCGACATTCAAGACATAGTC+TGG | 0.453643 | 5_1:+40657533 | Msa0730750:CDS |
TGAAGAGGAAGGCGGGAAAA+GGG | 0.462455 | 5_1:+40657720 | Msa0730750:CDS |
ACGCCACCATCGGTTGTTAC+CGG | 0.466838 | 5_1:-40657247 | None:intergenic |
TCTTCTTCATCGGGAACCTC+AGG | 0.467124 | 5_1:-40657361 | None:intergenic |
CGGGAAAAGGGAGAATTTAA+CGG | 0.473489 | 5_1:+40657732 | Msa0730750:CDS |
TACCGGAGTGAGGAGCAGTT+TGG | 0.486946 | 5_1:-40657230 | None:intergenic |
ATGGAGGGCGAAGACATAGA+AGG | 0.491229 | 5_1:-40657144 | None:intergenic |
GTCCACTGTGAGTATCAGAT+TGG | 0.492170 | 5_1:-40657426 | None:intergenic |
GGATCCTCCAAGTCAAGATT+CGG | 0.492563 | 5_1:-40657484 | None:intergenic |
CTACTTCCCAGAAGGCCACT+TGG | 0.494993 | 5_1:+40657084 | Msa0730750:CDS |
AATGGTTGGGAATTTGGAAT+GGG | 0.505443 | 5_1:+40657880 | Msa0730750:CDS |
GAATGGTTGGGAATTTGGAA+TGG | 0.509049 | 5_1:+40657879 | Msa0730750:CDS |
AACTCAGGTTTACTTCTGGT+TGG | 0.509116 | 5_1:+40657584 | Msa0730750:CDS |
AGATATTTGTCGGAATTCGC+AGG | 0.516804 | 5_1:+40657677 | Msa0730750:CDS |
AAAGATGCTGTGGAATTGGC+TGG | 0.518790 | 5_1:+40657766 | Msa0730750:CDS |
AAATCACACCAATTATCCTT+CGG | 0.520477 | 5_1:-40657820 | None:intergenic |
GATCTTTCCGAATCTTGACT+TGG | 0.525158 | 5_1:+40657477 | Msa0730750:CDS |
ATGAGGCTATGAAGAATGGT+TGG | 0.527470 | 5_1:+40657866 | Msa0730750:CDS |
TTGGATTTGGACGCCACCAT+CGG | 0.530656 | 5_1:-40657257 | None:intergenic |
TCGCGAAAGTCAGGAGGAGC+TGG | 0.536223 | 5_1:-40657283 | None:intergenic |
GAGAGCTTCTGAGACTGCAT+TGG | 0.537366 | 5_1:-40657505 | None:intergenic |
ATCTTCGGAATCTTGACAGC+AGG | 0.537862 | 5_1:-40657046 | None:intergenic |
TCGGGAACCTCAGGAGGAGG+TGG | 0.540065 | 5_1:-40657352 | None:intergenic |
GTTGATGAGGCTATGAAGAA+TGG | 0.545415 | 5_1:+40657862 | Msa0730750:CDS |
TCCACTGTGAGTATCAGATT+GGG | 0.550250 | 5_1:-40657425 | None:intergenic |
TCTGCCGGAAAGATATTTGT+CGG | 0.551480 | 5_1:+40657667 | Msa0730750:CDS |
TCAAGTTGTGTATTATCCGA+AGG | 0.558952 | 5_1:+40657804 | Msa0730750:CDS |
TCTGCCTGAGCCACGCCGTG+TGG | 0.560213 | 5_1:+40656994 | Msa0730750:CDS |
CGCCAAACTGCTCCTCACTC+CGG | 0.563089 | 5_1:+40657228 | Msa0730750:CDS |
TGAGGCTATGAAGAATGGTT+GGG | 0.565444 | 5_1:+40657867 | Msa0730750:CDS |
CAGTTTGGCGAAGACTTCAT+CGG | 0.568131 | 5_1:-40657215 | None:intergenic |
TTGGGTGAGAATCTTTACAT+AGG | 0.574104 | 5_1:-40657407 | None:intergenic |
AAGGGAGAATTTAACGGAGA+AGG | 0.575234 | 5_1:+40657738 | Msa0730750:CDS |
ATGATGCAAAGAACGGATGG+AGG | 0.576993 | 5_1:-40657160 | None:intergenic |
GAGATGATGCAAAGAACGGA+TGG | 0.581142 | 5_1:-40657163 | None:intergenic |
CTACAACTGAAGAGGAAGGC+GGG | 0.584889 | 5_1:+40657713 | Msa0730750:CDS |
CTCATCTGTTGATCTTCTGG+CGG | 0.586129 | 5_1:+40657183 | Msa0730750:CDS |
AAAATATGGCAAATATGCGC+CGG | 0.590046 | 5_1:+40657022 | Msa0730750:CDS |
TCATCGGGAACCTCAGGAGG+AGG | 0.591409 | 5_1:-40657355 | None:intergenic |
CTGGTTGGTCACAATTTGTG+AGG | 0.592410 | 5_1:+40657599 | Msa0730750:CDS |
TCTTCATCGGGAACCTCAGG+AGG | 0.597687 | 5_1:-40657358 | None:intergenic |
CCAGACTATGTCTTGAATGT+CGG | 0.597964 | 5_1:-40657533 | None:intergenic |
AGATGAGATGATGCAAAGAA+CGG | 0.600160 | 5_1:-40657167 | None:intergenic |
CTCACTCCGGTAACAACCGA+TGG | 0.610328 | 5_1:+40657241 | Msa0730750:CDS |
CCAAGAACCACCTCCTCCTG+AGG | 0.613028 | 5_1:+40657345 | Msa0730750:CDS |
TATGTACCCTACAACTGAAG+AGG | 0.620410 | 5_1:+40657705 | Msa0730750:CDS |
TGATGCAAAGAACGGATGGA+GGG | 0.621507 | 5_1:-40657159 | None:intergenic |
GCGAAGACTTCATCGGTGTG+AGG | 0.621909 | 5_1:-40657208 | None:intergenic |
GAAGGCAGTTAAAGATGCTG+TGG | 0.623830 | 5_1:+40657756 | Msa0730750:CDS |
GAGCTGTGTTTCAATGTTAG+GGG | 0.627335 | 5_1:-40657122 | None:intergenic |
AAAGTCTACTACTTCCCAGA+AGG | 0.628017 | 5_1:+40657076 | Msa0730750:CDS |
GCTACCACGTGAAGAAACTC+AGG | 0.629119 | 5_1:+40657569 | Msa0730750:CDS |
GCGTGGCTCAGGCAGAGACA+TGG | 0.631977 | 5_1:-40656987 | None:intergenic |
GGAATTGGCTGGGAAGAACA+TGG | 0.633030 | 5_1:+40657777 | Msa0730750:CDS |
ATTTGTCGGAATTCGCAGGA+AGG | 0.633253 | 5_1:+40657681 | Msa0730750:CDS |
TCTTGGTCGCGAAAGTCAGG+AGG | 0.639564 | 5_1:-40657289 | None:intergenic |
CATCGGTTGTTACCGGAGTG+AGG | 0.640720 | 5_1:-40657240 | None:intergenic |
AAGATGCTGTGGAATTGGCT+GGG | 0.646479 | 5_1:+40657767 | Msa0730750:CDS |
GGATGCGAGTGTTGTTGATG+AGG | 0.647140 | 5_1:+40657849 | Msa0730750:CDS |
CGCGACCAAGAAGAGAACAA+TGG | 0.647783 | 5_1:+40657301 | Msa0730750:CDS |
GACATATTATCAGCCAAAAG+GGG | 0.649939 | 5_1:+40657948 | Msa0730750:CDS |
TACCCTACAACTGAAGAGGA+AGG | 0.658978 | 5_1:+40657709 | Msa0730750:CDS |
ACTCCGGTAACAACCGATGG+TGG | 0.663161 | 5_1:+40657244 | Msa0730750:CDS |
TAAACCTGAGTTTCTTCACG+TGG | 0.666809 | 5_1:-40657573 | None:intergenic |
ATGAACAAGCATGTTCCAAG+TGG | 0.689657 | 5_1:-40657099 | None:intergenic |
ATCAATTCAATGCATTCACG+AGG | 0.696770 | 5_1:-40657457 | None:intergenic |
CCTACAACTGAAGAGGAAGG+CGG | 0.707887 | 5_1:+40657712 | Msa0730750:CDS |
ACCCAATCTGATACTCACAG+TGG | 0.756201 | 5_1:+40657424 | Msa0730750:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
! | GTTTTCATAAAAAACTCTGC+CGG | + | chr5_1:40657652-40657671 | Msa0730750:CDS | 30.0% |
AATTCCGACAAATATCTTTC+CGG | - | chr5_1:40657674-40657693 | None:intergenic | 30.0% | |
TGTATTATCCGAAGGATAAT+TGG | + | chr5_1:40657812-40657831 | Msa0730750:CDS | 30.0% | |
AAATCACACCAATTATCCTT+CGG | - | chr5_1:40657823-40657842 | None:intergenic | 30.0% | |
AAGACATATTATCAGCCAAA+AGG | + | chr5_1:40657946-40657965 | Msa0730750:CDS | 30.0% | |
AGACATATTATCAGCCAAAA+GGG | + | chr5_1:40657947-40657966 | Msa0730750:CDS | 30.0% | |
! | GTTTTCATAAAAAACTCTGC+CGG | + | chr5_1:40657652-40657671 | Msa0730750:CDS | 30.0% |
AATTCCGACAAATATCTTTC+CGG | - | chr5_1:40657674-40657693 | None:intergenic | 30.0% | |
TGTATTATCCGAAGGATAAT+TGG | + | chr5_1:40657812-40657831 | Msa0730750:CDS | 30.0% | |
AAATCACACCAATTATCCTT+CGG | - | chr5_1:40657823-40657842 | None:intergenic | 30.0% | |
AAGACATATTATCAGCCAAA+AGG | + | chr5_1:40657946-40657965 | Msa0730750:CDS | 30.0% | |
AGACATATTATCAGCCAAAA+GGG | + | chr5_1:40657947-40657966 | Msa0730750:CDS | 30.0% | |
AAAATATGGCAAATATGCGC+CGG | + | chr5_1:40657022-40657041 | Msa0730750:CDS | 35.0% | |
! | TAGACTTTTGAGCCAATCTT+CGG | - | chr5_1:40657064-40657083 | None:intergenic | 35.0% |
AGATGAGATGATGCAAAGAA+CGG | - | chr5_1:40657170-40657189 | None:intergenic | 35.0% | |
TGTTTCCATTGTTCTCTTCT+TGG | - | chr5_1:40657309-40657328 | None:intergenic | 35.0% | |
TTGGGTGAGAATCTTTACAT+AGG | - | chr5_1:40657410-40657429 | None:intergenic | 35.0% | |
ATCAATTCAATGCATTCACG+AGG | - | chr5_1:40657460-40657479 | None:intergenic | 35.0% | |
AAGAAACTCAGGTTTACTTC+TGG | + | chr5_1:40657580-40657599 | Msa0730750:CDS | 35.0% | |
AGTTAAAGATGCTGTGGAAT+TGG | + | chr5_1:40657762-40657781 | Msa0730750:CDS | 35.0% | |
! | TCAAGTTGTGTATTATCCGA+AGG | + | chr5_1:40657804-40657823 | Msa0730750:CDS | 35.0% |
! | GGATAATTGGTGTGATTTTG+TGG | + | chr5_1:40657825-40657844 | Msa0730750:CDS | 35.0% |
! | TAATTGGTGTGATTTTGTGG+TGG | + | chr5_1:40657828-40657847 | Msa0730750:CDS | 35.0% |
ATGAAGAATGGTTGGGAATT+TGG | + | chr5_1:40657874-40657893 | Msa0730750:CDS | 35.0% | |
! | AATGGTTGGGAATTTGGAAT+GGG | + | chr5_1:40657880-40657899 | Msa0730750:CDS | 35.0% |
GACATATTATCAGCCAAAAG+GGG | + | chr5_1:40657948-40657967 | Msa0730750:CDS | 35.0% | |
AAAATATGGCAAATATGCGC+CGG | + | chr5_1:40657022-40657041 | Msa0730750:CDS | 35.0% | |
! | TAGACTTTTGAGCCAATCTT+CGG | - | chr5_1:40657064-40657083 | None:intergenic | 35.0% |
AGATGAGATGATGCAAAGAA+CGG | - | chr5_1:40657170-40657189 | None:intergenic | 35.0% | |
TGTTTCCATTGTTCTCTTCT+TGG | - | chr5_1:40657309-40657328 | None:intergenic | 35.0% | |
TTGGGTGAGAATCTTTACAT+AGG | - | chr5_1:40657410-40657429 | None:intergenic | 35.0% | |
ATCAATTCAATGCATTCACG+AGG | - | chr5_1:40657460-40657479 | None:intergenic | 35.0% | |
AAGAAACTCAGGTTTACTTC+TGG | + | chr5_1:40657580-40657599 | Msa0730750:CDS | 35.0% | |
AGTTAAAGATGCTGTGGAAT+TGG | + | chr5_1:40657762-40657781 | Msa0730750:CDS | 35.0% | |
! | TCAAGTTGTGTATTATCCGA+AGG | + | chr5_1:40657804-40657823 | Msa0730750:CDS | 35.0% |
! | GGATAATTGGTGTGATTTTG+TGG | + | chr5_1:40657825-40657844 | Msa0730750:CDS | 35.0% |
! | TAATTGGTGTGATTTTGTGG+TGG | + | chr5_1:40657828-40657847 | Msa0730750:CDS | 35.0% |
ATGAAGAATGGTTGGGAATT+TGG | + | chr5_1:40657874-40657893 | Msa0730750:CDS | 35.0% | |
! | AATGGTTGGGAATTTGGAAT+GGG | + | chr5_1:40657880-40657899 | Msa0730750:CDS | 35.0% |
GACATATTATCAGCCAAAAG+GGG | + | chr5_1:40657948-40657967 | Msa0730750:CDS | 35.0% | |
! | GGCGCATATTTGCCATATTT+TGG | - | chr5_1:40657023-40657042 | None:intergenic | 40.0% |
AAAGTCTACTACTTCCCAGA+AGG | + | chr5_1:40657076-40657095 | Msa0730750:CDS | 40.0% | |
ATGAACAAGCATGTTCCAAG+TGG | - | chr5_1:40657102-40657121 | None:intergenic | 40.0% | |
GAGCTGTGTTTCAATGTTAG+GGG | - | chr5_1:40657125-40657144 | None:intergenic | 40.0% | |
GGAGCTGTGTTTCAATGTTA+GGG | - | chr5_1:40657126-40657145 | None:intergenic | 40.0% | |
AGGAGCTGTGTTTCAATGTT+AGG | - | chr5_1:40657127-40657146 | None:intergenic | 40.0% | |
CATCTCATCTGTTGATCTTC+TGG | + | chr5_1:40657180-40657199 | Msa0730750:CDS | 40.0% | |
CTATCATCGTCTTCTTCATC+GGG | - | chr5_1:40657373-40657392 | None:intergenic | 40.0% | |
GCTATCATCGTCTTCTTCAT+CGG | - | chr5_1:40657374-40657393 | None:intergenic | 40.0% | |
TCCACTGTGAGTATCAGATT+GGG | - | chr5_1:40657428-40657447 | None:intergenic | 40.0% | |
GATCTTTCCGAATCTTGACT+TGG | + | chr5_1:40657477-40657496 | Msa0730750:CDS | 40.0% | |
CCAGACTATGTCTTGAATGT+CGG | - | chr5_1:40657536-40657555 | None:intergenic | 40.0% | |
TAAACCTGAGTTTCTTCACG+TGG | - | chr5_1:40657576-40657595 | None:intergenic | 40.0% | |
AACTCAGGTTTACTTCTGGT+TGG | + | chr5_1:40657584-40657603 | Msa0730750:CDS | 40.0% | |
TCTGCCGGAAAGATATTTGT+CGG | + | chr5_1:40657667-40657686 | Msa0730750:CDS | 40.0% | |
AGATATTTGTCGGAATTCGC+AGG | + | chr5_1:40657677-40657696 | Msa0730750:CDS | 40.0% | |
TATGTACCCTACAACTGAAG+AGG | + | chr5_1:40657705-40657724 | Msa0730750:CDS | 40.0% | |
CGGGAAAAGGGAGAATTTAA+CGG | + | chr5_1:40657732-40657751 | Msa0730750:CDS | 40.0% | |
AAGGGAGAATTTAACGGAGA+AGG | + | chr5_1:40657738-40657757 | Msa0730750:CDS | 40.0% | |
! | GTTGATGAGGCTATGAAGAA+TGG | + | chr5_1:40657862-40657881 | Msa0730750:CDS | 40.0% |
ATGAGGCTATGAAGAATGGT+TGG | + | chr5_1:40657866-40657885 | Msa0730750:CDS | 40.0% | |
TGAGGCTATGAAGAATGGTT+GGG | + | chr5_1:40657867-40657886 | Msa0730750:CDS | 40.0% | |
GAATGGTTGGGAATTTGGAA+TGG | + | chr5_1:40657879-40657898 | Msa0730750:CDS | 40.0% | |
! | GGCGCATATTTGCCATATTT+TGG | - | chr5_1:40657023-40657042 | None:intergenic | 40.0% |
AAAGTCTACTACTTCCCAGA+AGG | + | chr5_1:40657076-40657095 | Msa0730750:CDS | 40.0% | |
ATGAACAAGCATGTTCCAAG+TGG | - | chr5_1:40657102-40657121 | None:intergenic | 40.0% | |
GAGCTGTGTTTCAATGTTAG+GGG | - | chr5_1:40657125-40657144 | None:intergenic | 40.0% | |
GGAGCTGTGTTTCAATGTTA+GGG | - | chr5_1:40657126-40657145 | None:intergenic | 40.0% | |
AGGAGCTGTGTTTCAATGTT+AGG | - | chr5_1:40657127-40657146 | None:intergenic | 40.0% | |
CATCTCATCTGTTGATCTTC+TGG | + | chr5_1:40657180-40657199 | Msa0730750:CDS | 40.0% | |
CTATCATCGTCTTCTTCATC+GGG | - | chr5_1:40657373-40657392 | None:intergenic | 40.0% | |
GCTATCATCGTCTTCTTCAT+CGG | - | chr5_1:40657374-40657393 | None:intergenic | 40.0% | |
TCCACTGTGAGTATCAGATT+GGG | - | chr5_1:40657428-40657447 | None:intergenic | 40.0% | |
GATCTTTCCGAATCTTGACT+TGG | + | chr5_1:40657477-40657496 | Msa0730750:CDS | 40.0% | |
CCAGACTATGTCTTGAATGT+CGG | - | chr5_1:40657536-40657555 | None:intergenic | 40.0% | |
TAAACCTGAGTTTCTTCACG+TGG | - | chr5_1:40657576-40657595 | None:intergenic | 40.0% | |
AACTCAGGTTTACTTCTGGT+TGG | + | chr5_1:40657584-40657603 | Msa0730750:CDS | 40.0% | |
TCTGCCGGAAAGATATTTGT+CGG | + | chr5_1:40657667-40657686 | Msa0730750:CDS | 40.0% | |
AGATATTTGTCGGAATTCGC+AGG | + | chr5_1:40657677-40657696 | Msa0730750:CDS | 40.0% | |
TATGTACCCTACAACTGAAG+AGG | + | chr5_1:40657705-40657724 | Msa0730750:CDS | 40.0% | |
CGGGAAAAGGGAGAATTTAA+CGG | + | chr5_1:40657732-40657751 | Msa0730750:CDS | 40.0% | |
AAGGGAGAATTTAACGGAGA+AGG | + | chr5_1:40657738-40657757 | Msa0730750:CDS | 40.0% | |
! | GTTGATGAGGCTATGAAGAA+TGG | + | chr5_1:40657862-40657881 | Msa0730750:CDS | 40.0% |
ATGAGGCTATGAAGAATGGT+TGG | + | chr5_1:40657866-40657885 | Msa0730750:CDS | 40.0% | |
TGAGGCTATGAAGAATGGTT+GGG | + | chr5_1:40657867-40657886 | Msa0730750:CDS | 40.0% | |
GAATGGTTGGGAATTTGGAA+TGG | + | chr5_1:40657879-40657898 | Msa0730750:CDS | 40.0% | |
!!! | GCCATATTTTGGAGTCCACA+CGG | - | chr5_1:40657012-40657031 | None:intergenic | 45.0% |
ATCTTCGGAATCTTGACAGC+AGG | - | chr5_1:40657049-40657068 | None:intergenic | 45.0% | |
GCTGTCAAGATTCCGAAGAT+TGG | + | chr5_1:40657049-40657068 | Msa0730750:CDS | 45.0% | |
TGATGCAAAGAACGGATGGA+GGG | - | chr5_1:40657162-40657181 | None:intergenic | 45.0% | |
ATGATGCAAAGAACGGATGG+AGG | - | chr5_1:40657163-40657182 | None:intergenic | 45.0% | |
GAGATGATGCAAAGAACGGA+TGG | - | chr5_1:40657166-40657185 | None:intergenic | 45.0% | |
CTCATCTGTTGATCTTCTGG+CGG | + | chr5_1:40657183-40657202 | Msa0730750:CDS | 45.0% | |
CAGTTTGGCGAAGACTTCAT+CGG | - | chr5_1:40657218-40657237 | None:intergenic | 45.0% | |
ACCCAATCTGATACTCACAG+TGG | + | chr5_1:40657424-40657443 | Msa0730750:CDS | 45.0% | |
GTCCACTGTGAGTATCAGAT+TGG | - | chr5_1:40657429-40657448 | None:intergenic | 45.0% | |
!! | CTTTCCGAATCTTGACTTGG+AGG | + | chr5_1:40657480-40657499 | Msa0730750:CDS | 45.0% |
GGATCCTCCAAGTCAAGATT+CGG | - | chr5_1:40657487-40657506 | None:intergenic | 45.0% | |
CCGACATTCAAGACATAGTC+TGG | + | chr5_1:40657533-40657552 | Msa0730750:CDS | 45.0% | |
! | CTGGTTGGTCACAATTTGTG+AGG | + | chr5_1:40657599-40657618 | Msa0730750:CDS | 45.0% |
ATTTGTCGGAATTCGCAGGA+AGG | + | chr5_1:40657681-40657700 | Msa0730750:CDS | 45.0% | |
TACCCTACAACTGAAGAGGA+AGG | + | chr5_1:40657709-40657728 | Msa0730750:CDS | 45.0% | |
GAAGGCAGTTAAAGATGCTG+TGG | + | chr5_1:40657756-40657775 | Msa0730750:CDS | 45.0% | |
AAAGATGCTGTGGAATTGGC+TGG | + | chr5_1:40657766-40657785 | Msa0730750:CDS | 45.0% | |
AAGATGCTGTGGAATTGGCT+GGG | + | chr5_1:40657767-40657786 | Msa0730750:CDS | 45.0% | |
!!! | GCCATATTTTGGAGTCCACA+CGG | - | chr5_1:40657012-40657031 | None:intergenic | 45.0% |
ATCTTCGGAATCTTGACAGC+AGG | - | chr5_1:40657049-40657068 | None:intergenic | 45.0% | |
GCTGTCAAGATTCCGAAGAT+TGG | + | chr5_1:40657049-40657068 | Msa0730750:CDS | 45.0% | |
TGATGCAAAGAACGGATGGA+GGG | - | chr5_1:40657162-40657181 | None:intergenic | 45.0% | |
ATGATGCAAAGAACGGATGG+AGG | - | chr5_1:40657163-40657182 | None:intergenic | 45.0% | |
GAGATGATGCAAAGAACGGA+TGG | - | chr5_1:40657166-40657185 | None:intergenic | 45.0% | |
CTCATCTGTTGATCTTCTGG+CGG | + | chr5_1:40657183-40657202 | Msa0730750:CDS | 45.0% | |
CAGTTTGGCGAAGACTTCAT+CGG | - | chr5_1:40657218-40657237 | None:intergenic | 45.0% | |
ACCCAATCTGATACTCACAG+TGG | + | chr5_1:40657424-40657443 | Msa0730750:CDS | 45.0% | |
GTCCACTGTGAGTATCAGAT+TGG | - | chr5_1:40657429-40657448 | None:intergenic | 45.0% | |
!! | CTTTCCGAATCTTGACTTGG+AGG | + | chr5_1:40657480-40657499 | Msa0730750:CDS | 45.0% |
GGATCCTCCAAGTCAAGATT+CGG | - | chr5_1:40657487-40657506 | None:intergenic | 45.0% | |
CCGACATTCAAGACATAGTC+TGG | + | chr5_1:40657533-40657552 | Msa0730750:CDS | 45.0% | |
! | CTGGTTGGTCACAATTTGTG+AGG | + | chr5_1:40657599-40657618 | Msa0730750:CDS | 45.0% |
ATTTGTCGGAATTCGCAGGA+AGG | + | chr5_1:40657681-40657700 | Msa0730750:CDS | 45.0% | |
TACCCTACAACTGAAGAGGA+AGG | + | chr5_1:40657709-40657728 | Msa0730750:CDS | 45.0% | |
GAAGGCAGTTAAAGATGCTG+TGG | + | chr5_1:40657756-40657775 | Msa0730750:CDS | 45.0% | |
AAAGATGCTGTGGAATTGGC+TGG | + | chr5_1:40657766-40657785 | Msa0730750:CDS | 45.0% | |
AAGATGCTGTGGAATTGGCT+GGG | + | chr5_1:40657767-40657786 | Msa0730750:CDS | 45.0% | |
GCCGTGTGGACTCCAAAATA+TGG | + | chr5_1:40657008-40657027 | Msa0730750:CDS | 50.0% | |
CATGTTCCAAGTGGCCTTCT+GGG | - | chr5_1:40657093-40657112 | None:intergenic | 50.0% | |
ATGGAGGGCGAAGACATAGA+AGG | - | chr5_1:40657147-40657166 | None:intergenic | 50.0% | |
TTGGATTTGGACGCCACCAT+CGG | - | chr5_1:40657260-40657279 | None:intergenic | 50.0% | |
! | GAGGAGCTGGTTCTTGGATT+TGG | - | chr5_1:40657273-40657292 | None:intergenic | 50.0% |
TCTTCTTGGTCGCGAAAGTC+AGG | - | chr5_1:40657295-40657314 | None:intergenic | 50.0% | |
CGCGACCAAGAAGAGAACAA+TGG | + | chr5_1:40657301-40657320 | Msa0730750:CDS | 50.0% | |
TCTTCTTCATCGGGAACCTC+AGG | - | chr5_1:40657364-40657383 | None:intergenic | 50.0% | |
!! | GAGAGCTTCTGAGACTGCAT+TGG | - | chr5_1:40657508-40657527 | None:intergenic | 50.0% |
GCTACCACGTGAAGAAACTC+AGG | + | chr5_1:40657569-40657588 | Msa0730750:CDS | 50.0% | |
CGCCTTCCTCTTCAGTTGTA+GGG | - | chr5_1:40657714-40657733 | None:intergenic | 50.0% | |
CCTACAACTGAAGAGGAAGG+CGG | + | chr5_1:40657712-40657731 | Msa0730750:CDS | 50.0% | |
CTACAACTGAAGAGGAAGGC+GGG | + | chr5_1:40657713-40657732 | Msa0730750:CDS | 50.0% | |
TGAAGAGGAAGGCGGGAAAA+GGG | + | chr5_1:40657720-40657739 | Msa0730750:CDS | 50.0% | |
GGAATTGGCTGGGAAGAACA+TGG | + | chr5_1:40657777-40657796 | Msa0730750:CDS | 50.0% | |
! | GGATGCGAGTGTTGTTGATG+AGG | + | chr5_1:40657849-40657868 | Msa0730750:CDS | 50.0% |
GCCGTGTGGACTCCAAAATA+TGG | + | chr5_1:40657008-40657027 | Msa0730750:CDS | 50.0% | |
CATGTTCCAAGTGGCCTTCT+GGG | - | chr5_1:40657093-40657112 | None:intergenic | 50.0% | |
ATGGAGGGCGAAGACATAGA+AGG | - | chr5_1:40657147-40657166 | None:intergenic | 50.0% | |
TTGGATTTGGACGCCACCAT+CGG | - | chr5_1:40657260-40657279 | None:intergenic | 50.0% | |
! | GAGGAGCTGGTTCTTGGATT+TGG | - | chr5_1:40657273-40657292 | None:intergenic | 50.0% |
TCTTCTTGGTCGCGAAAGTC+AGG | - | chr5_1:40657295-40657314 | None:intergenic | 50.0% | |
CGCGACCAAGAAGAGAACAA+TGG | + | chr5_1:40657301-40657320 | Msa0730750:CDS | 50.0% | |
TCTTCTTCATCGGGAACCTC+AGG | - | chr5_1:40657364-40657383 | None:intergenic | 50.0% | |
!! | GAGAGCTTCTGAGACTGCAT+TGG | - | chr5_1:40657508-40657527 | None:intergenic | 50.0% |
GCTACCACGTGAAGAAACTC+AGG | + | chr5_1:40657569-40657588 | Msa0730750:CDS | 50.0% | |
CGCCTTCCTCTTCAGTTGTA+GGG | - | chr5_1:40657714-40657733 | None:intergenic | 50.0% | |
CCTACAACTGAAGAGGAAGG+CGG | + | chr5_1:40657712-40657731 | Msa0730750:CDS | 50.0% | |
CTACAACTGAAGAGGAAGGC+GGG | + | chr5_1:40657713-40657732 | Msa0730750:CDS | 50.0% | |
TGAAGAGGAAGGCGGGAAAA+GGG | + | chr5_1:40657720-40657739 | Msa0730750:CDS | 50.0% | |
GGAATTGGCTGGGAAGAACA+TGG | + | chr5_1:40657777-40657796 | Msa0730750:CDS | 50.0% | |
! | GGATGCGAGTGTTGTTGATG+AGG | + | chr5_1:40657849-40657868 | Msa0730750:CDS | 50.0% |
!!! | ATTTTGGAGTCCACACGGCG+TGG | - | chr5_1:40657007-40657026 | None:intergenic | 55.0% |
CGGAATCTTGACAGCAGGTC+CGG | - | chr5_1:40657044-40657063 | None:intergenic | 55.0% | |
CTACTTCCCAGAAGGCCACT+TGG | + | chr5_1:40657084-40657103 | Msa0730750:CDS | 55.0% | |
GCATGTTCCAAGTGGCCTTC+TGG | - | chr5_1:40657094-40657113 | None:intergenic | 55.0% | |
GCGAAGACTTCATCGGTGTG+AGG | - | chr5_1:40657211-40657230 | None:intergenic | 55.0% | |
TACCGGAGTGAGGAGCAGTT+TGG | - | chr5_1:40657233-40657252 | None:intergenic | 55.0% | |
! | CATCGGTTGTTACCGGAGTG+AGG | - | chr5_1:40657243-40657262 | None:intergenic | 55.0% |
CTCACTCCGGTAACAACCGA+TGG | + | chr5_1:40657241-40657260 | Msa0730750:CDS | 55.0% | |
ACTCCGGTAACAACCGATGG+TGG | + | chr5_1:40657244-40657263 | Msa0730750:CDS | 55.0% | |
! | ACGCCACCATCGGTTGTTAC+CGG | - | chr5_1:40657250-40657269 | None:intergenic | 55.0% |
! | AGTCAGGAGGAGCTGGTTCT+TGG | - | chr5_1:40657279-40657298 | None:intergenic | 55.0% |
TCTTGGTCGCGAAAGTCAGG+AGG | - | chr5_1:40657292-40657311 | None:intergenic | 55.0% | |
GAGGAGGTGGTTCTTGGACT+TGG | - | chr5_1:40657342-40657361 | None:intergenic | 55.0% | |
TCTTCATCGGGAACCTCAGG+AGG | - | chr5_1:40657361-40657380 | None:intergenic | 55.0% | |
CCGCCTTCCTCTTCAGTTGT+AGG | - | chr5_1:40657715-40657734 | None:intergenic | 55.0% | |
CTGAAGAGGAAGGCGGGAAA+AGG | + | chr5_1:40657719-40657738 | Msa0730750:CDS | 55.0% | |
!!! | ATTTTGGAGTCCACACGGCG+TGG | - | chr5_1:40657007-40657026 | None:intergenic | 55.0% |
CGGAATCTTGACAGCAGGTC+CGG | - | chr5_1:40657044-40657063 | None:intergenic | 55.0% | |
CTACTTCCCAGAAGGCCACT+TGG | + | chr5_1:40657084-40657103 | Msa0730750:CDS | 55.0% | |
GCATGTTCCAAGTGGCCTTC+TGG | - | chr5_1:40657094-40657113 | None:intergenic | 55.0% | |
GCGAAGACTTCATCGGTGTG+AGG | - | chr5_1:40657211-40657230 | None:intergenic | 55.0% | |
TACCGGAGTGAGGAGCAGTT+TGG | - | chr5_1:40657233-40657252 | None:intergenic | 55.0% | |
! | CATCGGTTGTTACCGGAGTG+AGG | - | chr5_1:40657243-40657262 | None:intergenic | 55.0% |
CTCACTCCGGTAACAACCGA+TGG | + | chr5_1:40657241-40657260 | Msa0730750:CDS | 55.0% | |
ACTCCGGTAACAACCGATGG+TGG | + | chr5_1:40657244-40657263 | Msa0730750:CDS | 55.0% | |
! | ACGCCACCATCGGTTGTTAC+CGG | - | chr5_1:40657250-40657269 | None:intergenic | 55.0% |
! | AGTCAGGAGGAGCTGGTTCT+TGG | - | chr5_1:40657279-40657298 | None:intergenic | 55.0% |
TCTTGGTCGCGAAAGTCAGG+AGG | - | chr5_1:40657292-40657311 | None:intergenic | 55.0% | |
GAGGAGGTGGTTCTTGGACT+TGG | - | chr5_1:40657342-40657361 | None:intergenic | 55.0% | |
TCTTCATCGGGAACCTCAGG+AGG | - | chr5_1:40657361-40657380 | None:intergenic | 55.0% | |
CCGCCTTCCTCTTCAGTTGT+AGG | - | chr5_1:40657715-40657734 | None:intergenic | 55.0% | |
CTGAAGAGGAAGGCGGGAAA+AGG | + | chr5_1:40657719-40657738 | Msa0730750:CDS | 55.0% | |
CGCCAAACTGCTCCTCACTC+CGG | + | chr5_1:40657228-40657247 | Msa0730750:CDS | 60.0% | |
TCGCGAAAGTCAGGAGGAGC+TGG | - | chr5_1:40657286-40657305 | None:intergenic | 60.0% | |
CCTCAGGAGGAGGTGGTTCT+TGG | - | chr5_1:40657348-40657367 | None:intergenic | 60.0% | |
CCAAGAACCACCTCCTCCTG+AGG | + | chr5_1:40657345-40657364 | Msa0730750:CDS | 60.0% | |
TCATCGGGAACCTCAGGAGG+AGG | - | chr5_1:40657358-40657377 | None:intergenic | 60.0% | |
CGCCAAACTGCTCCTCACTC+CGG | + | chr5_1:40657228-40657247 | Msa0730750:CDS | 60.0% | |
TCGCGAAAGTCAGGAGGAGC+TGG | - | chr5_1:40657286-40657305 | None:intergenic | 60.0% | |
CCTCAGGAGGAGGTGGTTCT+TGG | - | chr5_1:40657348-40657367 | None:intergenic | 60.0% | |
CCAAGAACCACCTCCTCCTG+AGG | + | chr5_1:40657345-40657364 | Msa0730750:CDS | 60.0% | |
TCATCGGGAACCTCAGGAGG+AGG | - | chr5_1:40657358-40657377 | None:intergenic | 60.0% | |
TCGGGAACCTCAGGAGGAGG+TGG | - | chr5_1:40657355-40657374 | None:intergenic | 65.0% | |
TCGGGAACCTCAGGAGGAGG+TGG | - | chr5_1:40657355-40657374 | None:intergenic | 65.0% | |
TCTGCCTGAGCCACGCCGTG+TGG | + | chr5_1:40656994-40657013 | Msa0730750:CDS | 70.0% | |
GAGTCCACACGGCGTGGCTC+AGG | - | chr5_1:40657001-40657020 | None:intergenic | 70.0% | |
TCTGCCTGAGCCACGCCGTG+TGG | + | chr5_1:40656994-40657013 | Msa0730750:CDS | 70.0% | |
GAGTCCACACGGCGTGGCTC+AGG | - | chr5_1:40657001-40657020 | None:intergenic | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 40656989 | 40657981 | 40656989 | ID=Msa0730750;Name=Msa0730750 |
chr5_1 | mRNA | 40656989 | 40657981 | 40656989 | ID=Msa0730750-mRNA-1;Parent=Msa0730750;Name=Msa0730750-mRNA-1;_AED=0.19;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|330 |
chr5_1 | exon | 40656989 | 40657981 | 40656989 | ID=Msa0730750-mRNA-1:exon:11811;Parent=Msa0730750-mRNA-1 |
chr5_1 | CDS | 40656989 | 40657981 | 40656989 | ID=Msa0730750-mRNA-1:cds;Parent=Msa0730750-mRNA-1 |
Gene Sequence |
Protein sequence |