AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0731040

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731040 MtrunA17_Chr5g0424801 65.246 305 89 7 1 298 39 333 2.31e-123 360
Msa0731040 MtrunA17_Chr5g0425261 56.757 370 121 9 1 362 39 377 2.99e-122 358
Msa0731040 MtrunA17_Chr5g0424931 47.307 427 131 14 1 350 46 455 6.64e-102 311
Msa0731040 MtrunA17_Chr5g0424741 54.030 335 112 12 1 298 39 368 3.61e-97 298
Msa0731040 MtrunA17_Chr5g0424741 70.588 68 20 0 296 363 438 505 3.31e-21 95.1
Msa0731040 MtrunA17_Chr1g0178011 51.111 315 120 12 1 298 39 336 2.04e-82 258
Msa0731040 MtrunA17_Chr5g0417281 37.868 441 190 12 1 377 38 458 3.21e-75 242
Msa0731040 MtrunA17_Chr5g0424791 82.877 146 16 3 25 167 12 151 4.21e-68 211
Msa0731040 MtrunA17_Chr5g0436761 36.842 399 181 12 1 347 39 418 4.70e-65 214
Msa0731040 MtrunA17_Chr5g0417211 41.298 339 156 13 1 318 39 355 8.27e-59 196
Msa0731040 MtrunA17_Chr2g0277461 39.394 363 167 15 21 346 60 406 1.36e-57 194
Msa0731040 MtrunA17_Chr2g0289221 43.771 297 128 13 1 280 47 321 1.65e-56 189
Msa0731040 MtrunA17_Chr3g0115271 34.136 457 178 16 22 377 63 497 2.46e-53 186
Msa0731040 MtrunA17_Chr2g0277531 41.017 295 136 13 1 280 47 318 1.88e-49 169
Msa0731040 MtrunA17_Chr5g0425651 62.281 114 40 3 193 304 1 113 2.09e-38 134
Msa0731040 MtrunA17_Chr1g0181211 29.234 431 196 16 2 334 55 474 1.26e-34 135
Msa0731040 MtrunA17_Chr1g0199681 31.548 336 151 13 23 297 137 454 1.21e-30 123
Msa0731040 MtrunA17_Chr2g0326761 30.247 324 149 12 33 297 67 372 3.94e-29 119
Msa0731040 MtrunA17_Chr7g0264171 25.893 448 188 16 2 333 59 478 3.04e-28 116
Msa0731040 MtrunA17_Chr4g0028971 32.246 276 125 10 80 297 108 379 5.20e-28 115
Msa0731040 MtrunA17_Chr5g0425661 44.512 164 71 6 11 162 73 228 1.27e-27 108
Msa0731040 MtrunA17_Chr7g0264161 28.571 308 165 13 2 280 20 301 1.81e-22 96.3
Msa0731040 MtrunA17_Chr2g0276781 28.521 284 166 9 38 301 89 355 4.88e-21 95.1
Msa0731040 MtrunA17_Chr4g0009751 27.857 280 172 9 38 301 85 350 5.99e-20 91.7
Msa0731040 MtrunA17_Chr7g0239061 27.500 280 173 9 38 301 80 345 1.05e-19 90.9
Msa0731040 MtrunA17_Chr2g0285461 29.431 299 162 13 34 305 86 362 2.09e-19 90.1
Msa0731040 MtrunA17_Chr2g0282961 26.271 236 160 6 81 304 158 391 1.63e-18 87.4
Msa0731040 MtrunA17_Chr8g0376771 28.283 297 168 12 34 305 85 361 3.75e-18 86.3
Msa0731040 MtrunA17_Chr3g0109391 27.682 289 180 11 34 305 89 365 1.16e-17 84.7
Msa0731040 MtrunA17_Chr5g0424781 100.000 36 0 0 299 334 41 76 1.86e-17 77.4
Msa0731040 MtrunA17_Chr5g0433301 28.283 297 168 12 34 305 87 363 2.40e-17 84.0
Msa0731040 MtrunA17_Chr4g0070181 26.224 286 178 9 21 283 63 338 3.17e-17 83.6
Msa0731040 MtrunA17_Chr2g0301251 26.408 284 176 9 23 283 65 338 6.30e-17 82.8
Msa0731040 MtrunA17_Chr4g0029671 28.511 235 155 5 81 303 166 399 1.36e-16 81.6
Msa0731040 MtrunA17_Chr8g0385791 25.949 316 193 11 17 309 103 400 1.36e-16 81.6
Msa0731040 MtrunA17_Chr4g0046371 26.613 248 164 8 81 313 148 392 2.49e-16 80.9
Msa0731040 MtrunA17_Chr8g0346711 26.573 286 183 9 38 309 95 367 4.74e-15 76.6
Msa0731040 MtrunA17_Chr1g0156321 27.645 293 171 13 34 303 106 380 9.14e-15 75.9
Msa0731040 MtrunA17_Chr2g0326281 26.103 272 167 6 71 309 150 420 1.95e-14 75.1
Msa0731040 MtrunA17_Chr8g0389081 25.574 305 192 12 18 301 77 367 4.18e-14 73.9
Msa0731040 MtrunA17_Chr8g0356211 24.324 222 149 6 88 297 3 217 9.18e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0731040 AT1G77850.1 31.707 328 153 11 26 298 64 375 2.12e-39 148
Msa0731040 AT1G77850.2 31.707 328 153 11 26 298 64 375 2.82e-39 147
Msa0731040 AT4G30080.1 32.911 316 152 12 33 297 74 380 1.07e-31 127
Msa0731040 AT2G28350.1 30.769 338 171 14 19 297 45 378 1.06e-29 121
Msa0731040 AT2G28350.2 30.769 338 171 14 19 297 45 378 1.20e-29 120
Msa0731040 AT2G46530.1 29.433 282 167 9 38 303 88 353 1.28e-22 100
Msa0731040 AT2G46530.3 29.433 282 167 9 38 303 109 374 1.40e-22 99.8
Msa0731040 AT1G59750.1 28.669 293 175 9 38 310 88 366 3.49e-21 95.9
Msa0731040 AT1G59750.3 28.669 293 175 9 38 310 88 366 3.49e-21 95.9
Msa0731040 AT1G59750.2 28.669 293 175 9 38 310 88 366 3.57e-21 95.9
Msa0731040 AT1G59750.4 28.328 293 176 10 38 310 88 366 3.94e-21 95.5
Msa0731040 AT3G61830.1 28.571 280 168 10 38 301 92 355 1.02e-20 94.4
Msa0731040 AT3G61830.2 28.571 280 168 10 38 301 41 304 1.47e-20 93.6
Msa0731040 AT1G30330.1 27.463 335 203 13 34 343 86 405 9.05e-20 91.7
Msa0731040 AT1G30330.3 27.463 335 203 13 34 343 88 407 9.22e-20 91.7
Msa0731040 AT1G30330.2 27.463 335 203 13 34 343 88 407 9.22e-20 91.7
Msa0731040 AT4G23980.2 26.545 275 181 7 38 301 79 343 9.74e-20 91.3
Msa0731040 AT4G23980.1 26.545 275 181 7 38 301 79 343 1.00e-19 91.3
Msa0731040 AT2G46530.2 29.297 256 152 10 64 303 24 266 4.44e-19 89.0
Msa0731040 AT5G37020.1 27.946 297 169 12 34 305 85 361 4.58e-19 89.7
Msa0731040 AT5G37020.2 27.946 297 169 12 34 305 85 361 4.94e-19 89.4
Msa0731040 AT5G62000.4 26.829 287 176 9 34 301 123 394 1.65e-18 87.8
Msa0731040 AT5G62000.2 26.829 287 176 9 34 301 123 394 1.78e-18 87.8
Msa0731040 AT5G62000.5 26.829 287 176 9 34 301 123 394 1.78e-18 87.8
Msa0731040 AT5G62000.3 26.829 287 176 9 34 301 123 394 1.78e-18 87.8
Msa0731040 AT5G62000.1 26.829 287 176 9 34 301 123 394 1.78e-18 87.8
Msa0731040 AT2G33860.1 26.733 303 173 11 34 305 109 393 2.61e-18 87.0
Msa0731040 AT2G33860.2 27.869 244 148 9 81 305 2 236 2.72e-18 86.7
Msa0731040 AT1G35520.1 27.046 281 170 9 34 298 89 350 2.31e-17 84.0
Msa0731040 AT1G34390.1 27.240 279 170 8 34 298 89 348 2.43e-17 84.0
Msa0731040 AT1G34410.1 26.690 281 171 9 34 298 89 350 6.11e-17 82.8
Msa0731040 AT5G37020.3 28.000 250 141 10 81 305 31 266 7.79e-17 82.8
Msa0731040 AT1G34310.1 27.500 280 168 9 34 297 89 349 2.76e-16 80.9
Msa0731040 AT1G35240.1 26.690 281 171 9 34 298 89 350 6.60e-16 79.7
Msa0731040 AT1G35540.1 26.429 280 171 9 34 297 89 349 2.26e-15 78.2
Msa0731040 AT5G60450.2 26.136 264 162 10 70 309 136 390 2.43e-15 78.2
Msa0731040 AT5G60450.1 26.136 264 162 10 70 309 160 414 3.06e-15 77.8
Msa0731040 AT5G20730.3 27.170 265 168 8 34 283 86 340 5.96e-15 77.0
Msa0731040 AT5G20730.1 27.170 265 168 8 34 283 86 340 7.23e-15 77.0
Msa0731040 AT5G20730.2 27.547 265 166 9 34 283 86 339 9.64e-15 76.6
Msa0731040 AT1G19850.2 26.132 287 184 9 34 303 106 381 1.19e-13 73.2
Msa0731040 AT1G19850.1 26.132 287 184 9 34 303 117 392 1.34e-13 72.8
Msa0731040 AT1G19220.1 26.838 272 159 10 34 283 85 338 2.83e-13 72.0
Msa0731040 AT1G34170.1 25.743 303 184 10 19 297 64 349 4.31e-13 70.9

Find 90 sgRNAs with CRISPR-Local

Find 312 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCCTCTTTCACCTGTTTC+AGG 0.082511 5_1:-41124252 None:intergenic
CCTCTTTATCATAGGTTAAT+TGG 0.084452 5_1:+41125161 Msa0731040:intron
CATGAAAACAACAGAATCTT+TGG 0.216238 5_1:-41124172 None:intergenic
ATGAAGATTGGTTGGGAATC+TGG 0.244310 5_1:+41124408 Msa0731040:CDS
AAGGATCCCATTGTTGAATT+AGG 0.252137 5_1:-41125404 None:intergenic
ATTCTTCCAATGTCCCTAAT+TGG 0.255553 5_1:+41124523 Msa0731040:CDS
TGTTTCCATCGTCGTCTTCT+TGG 0.258015 5_1:-41123930 None:intergenic
ACCTCAAGAATGTGCCAATT+AGG 0.262799 5_1:-41124537 None:intergenic
CCTCCTCCTCCTGTTATTCC+TGG 0.298255 5_1:+41123907 Msa0731040:CDS
CTTTCACCTGTTTCAGGTGC+AGG 0.315580 5_1:-41124246 None:intergenic
GGCAAGAAGTCAGCTGATTT+AGG 0.320028 5_1:-41125608 None:intergenic
CTCTTTATCATAGGTTAATT+GGG 0.320114 5_1:+41125162 Msa0731040:intron
GACTTCACCAAGTCAAGCTT+TGG 0.363368 5_1:-41124036 None:intergenic
AAGAATCTGAAACAGATAAA+TGG 0.384713 5_1:-41125487 None:intergenic
CCTCAAGAATGTGCCAATTA+GGG 0.384917 5_1:-41124536 None:intergenic
AGATTCCCAACCAATCTTCA+TGG 0.388833 5_1:-41124406 None:intergenic
TATCAGAATCCAACCATGTT+TGG 0.389045 5_1:-41125430 None:intergenic
TGGGAGATTGTGACACCGTT+AGG 0.391053 5_1:-41123742 None:intergenic
CAGCTGGCATGCAGGGAGCC+AGG 0.391755 5_1:+41125459 Msa0731040:CDS
TCTTCTTGGCCAGGAATAAC+AGG 0.405708 5_1:-41123916 None:intergenic
AACTTCCCTGCACCTGAAAC+AGG 0.412486 5_1:+41124240 Msa0731040:CDS
GGAGGATCTTGGGCAGTTAC+CGG 0.415046 5_1:-41123865 None:intergenic
CCATCGTCGTCTTCTTGGCC+AGG 0.419252 5_1:-41123925 None:intergenic
CGACCTTAAAAGCCAAGAAT+GGG 0.432454 5_1:+41124077 Msa0731040:CDS
GGAATAACAGGAGGAGGAGG+AGG 0.433203 5_1:-41123904 None:intergenic
AGTACAATGGCAGGGTTTAG+TGG 0.442032 5_1:+41125551 Msa0731040:CDS
ATCCAACCATGTTTGGTTCA+AGG 0.448487 5_1:-41125423 None:intergenic
TTATCATAGGTTAATTGGGA+TGG 0.454702 5_1:+41125166 Msa0731040:intron
ATCGGGAACAGTACAATGGC+AGG 0.465455 5_1:+41125542 Msa0731040:CDS
GTAGATGATTCCATGAAGAT+TGG 0.467615 5_1:+41124396 Msa0731040:CDS
AACAGATAAATGGTCGTGCC+TGG 0.474038 5_1:-41125477 None:intergenic
TCACACCATTTCCTAGCTGT+TGG 0.474083 5_1:-41124351 None:intergenic
TACCGGAGTGAGGAGCAGTT+TGG 0.479172 5_1:-41123848 None:intergenic
ATTATCCAACAGCTAGGAAA+TGG 0.485842 5_1:+41124346 Msa0731040:CDS
GGGAGATTGTGACACCGTTA+GGG 0.488676 5_1:-41123741 None:intergenic
ATGATTCCATGAAGATTGGT+TGG 0.491255 5_1:+41124400 Msa0731040:CDS
TGATTCCATGAAGATTGGTT+GGG 0.496383 5_1:+41124401 Msa0731040:CDS
TTTCACCTGTTTCAGGTGCA+GGG 0.499054 5_1:-41124245 None:intergenic
GACAAGGGTGATGGTTTCAT+CGG 0.500866 5_1:+41125524 Msa0731040:CDS
CCGACCTTAAAAGCCAAGAA+TGG 0.501034 5_1:+41124076 Msa0731040:CDS
GATCTTTCCAAAGCTTGACT+TGG 0.502331 5_1:+41124029 Msa0731040:CDS
AGTCAAACTTACGTTGAAGA+AGG 0.505352 5_1:+41124437 Msa0731040:CDS
ATACAAACATAGTCAATCCT+TGG 0.507379 5_1:+41125206 Msa0731040:CDS
AGTGAGAGCATCAACAAATC+CGG 0.509407 5_1:-41123812 None:intergenic
GAGTTACCTAATTCAACAAT+GGG 0.511187 5_1:+41125398 Msa0731040:CDS
ATCCTTGAACCAAACATGGT+TGG 0.512134 5_1:+41125421 Msa0731040:CDS
ACTTGTTGCTTGGTTCATTG+AGG 0.515871 5_1:-41125629 None:intergenic
TTTGAATGTAGTGGAATTGG+CGG 0.519833 5_1:+41124296 Msa0731040:CDS
CTGAAACAGGTGAAAGAGGC+AGG 0.524658 5_1:+41124253 Msa0731040:CDS
AAAGGCATATTATCAGCCTA+AGG 0.530867 5_1:+41124476 Msa0731040:CDS
ACAAGGGTGATGGTTTCATC+GGG 0.532238 5_1:+41125525 Msa0731040:CDS
CCAGGAATAACAGGAGGAGG+AGG 0.533404 5_1:-41123907 None:intergenic
CCCTAATTGGCACATTCTTG+AGG 0.538147 5_1:+41124536 Msa0731040:CDS
CATGCATGTCGTTCCCCTAA+CGG 0.541193 5_1:+41123727 Msa0731040:CDS
TTTCCATGCATCATTTCAGC+CGG 0.543966 5_1:+41123793 Msa0731040:CDS
AAACATAGTCAATCCTTGGC+AGG 0.544769 5_1:+41125210 Msa0731040:CDS
GCACCTGAAACAGGTGAAAG+AGG 0.547550 5_1:+41124249 Msa0731040:CDS
AAGGCATATTATCAGCCTAA+GGG 0.550266 5_1:+41124477 Msa0731040:CDS
GGATGAGTCTTCAAATTCAA+AGG 0.551941 5_1:+41124458 Msa0731040:CDS
ACAGTAGAGATTGTCCCCTT+AGG 0.555913 5_1:-41124492 None:intergenic
TGCCAAACTGCTCCTCACTC+CGG 0.557138 5_1:+41123846 Msa0731040:CDS
TTGCAAGCTTCAACCTGCCA+AGG 0.560996 5_1:-41125223 None:intergenic
GGAGTTACCTAATTCAACAA+TGG 0.567859 5_1:+41125397 Msa0731040:intron
AATGTGCCAATTAGGGACAT+TGG 0.568650 5_1:-41124529 None:intergenic
GAAATGATGCATGGAAAGGA+TGG 0.568677 5_1:-41123787 None:intergenic
TGTTGATGCTCTCACTGATG+AGG 0.570829 5_1:+41123819 Msa0731040:CDS
TGGCCAGGAATAACAGGAGG+AGG 0.572795 5_1:-41123910 None:intergenic
GGTAATGATCATAAAGACAC+TGG 0.575889 5_1:-41123762 None:intergenic
GGAATTGGCGGACAAGAACA+TGG 0.582831 5_1:+41124308 Msa0731040:CDS
TTGTGTATTATCCAACAGCT+AGG 0.584708 5_1:+41124340 Msa0731040:CDS
TCAGTAGACTACGTACTGGC+TGG 0.603214 5_1:+41124118 Msa0731040:CDS
CAGGAATTTAACTGAGAGTG+CGG 0.604399 5_1:+41124272 Msa0731040:CDS
ATCAAGTCAGCGCATTCATG+AGG 0.615421 5_1:-41124009 None:intergenic
AAACTCAGTAGACTACGTAC+TGG 0.617424 5_1:+41124114 Msa0731040:CDS
TCTGACACAGAGCTATACAT+TGG 0.617625 5_1:+41125581 Msa0731040:CDS
AATCCGGCTGAAATGATGCA+TGG 0.620320 5_1:-41123796 None:intergenic
TGGGATCCTTGAACCAAACA+TGG 0.620645 5_1:+41125417 Msa0731040:CDS
TCGGGAACAGTACAATGGCA+GGG 0.632286 5_1:+41125543 Msa0731040:CDS
ACCTTAAAAGCCAAGAATGG+GGG 0.634733 5_1:+41124079 Msa0731040:CDS
GACCTTAAAAGCCAAGAATG+GGG 0.635286 5_1:+41124078 Msa0731040:CDS
GGCTGAAATGATGCATGGAA+AGG 0.635642 5_1:-41123791 None:intergenic
CTTGGGCAGTTACCGGAGTG+AGG 0.639258 5_1:-41123858 None:intergenic
AGGCATATTATCAGCCTAAG+GGG 0.646519 5_1:+41124478 Msa0731040:CDS
GGAGATTGTGACACCGTTAG+GGG 0.656708 5_1:-41123740 None:intergenic
TGATGCATGGAAAGGATGGA+CGG 0.656958 5_1:-41123783 None:intergenic
TTTCATCGGGAACAGTACAA+TGG 0.687293 5_1:+41125538 Msa0731040:CDS
GTAATGATCATAAAGACACT+GGG 0.691760 5_1:-41123761 None:intergenic
CCTGGCCAAGAAGACGACGA+TGG 0.694726 5_1:+41123925 Msa0731040:CDS
TCTTGGCCAGGAATAACAGG+AGG 0.699852 5_1:-41123913 None:intergenic
TAGTCTACTGAGTTTCACGT+AGG 0.730433 5_1:-41124106 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTCCAACTAATTTTTTTC+TGG - chr5_1:41124208-41124227 None:intergenic 20.0%
!! TCAAACAAATCATGAAATTA+TGG - chr5_1:41124626-41124645 None:intergenic 20.0%
!!! CAATGTTTTAGAATTACATT+TGG - chr5_1:41124786-41124805 None:intergenic 20.0%
!! ATGAAAAGTTTCTTATCAAT+TGG - chr5_1:41124968-41124987 None:intergenic 20.0%
!!! TTTGTATTTTGCAAGATTTT+AGG - chr5_1:41125193-41125212 None:intergenic 20.0%
!!! AATTCCAACTAATTTTTTTC+TGG - chr5_1:41124208-41124227 None:intergenic 20.0%
!! TCAAACAAATCATGAAATTA+TGG - chr5_1:41124626-41124645 None:intergenic 20.0%
!!! CAATGTTTTAGAATTACATT+TGG - chr5_1:41124786-41124805 None:intergenic 20.0%
!! ATGAAAAGTTTCTTATCAAT+TGG - chr5_1:41124968-41124987 None:intergenic 20.0%
!!! TTTGTATTTTGCAAGATTTT+AGG - chr5_1:41125193-41125212 None:intergenic 20.0%
!!! AACAATCGATTCTAAAATGT+TGG - chr5_1:41124837-41124856 None:intergenic 25.0%
! AATTAACCTATGATAAAGAG+GGG - chr5_1:41125162-41125181 None:intergenic 25.0%
! CAATTAACCTATGATAAAGA+GGG - chr5_1:41125163-41125182 None:intergenic 25.0%
! CTCTTTATCATAGGTTAATT+GGG + chr5_1:41125162-41125181 Msa0731040:intron 25.0%
!!! ACTTTTTTTTTTGAAGGGAA+TGG - chr5_1:41125268-41125287 None:intergenic 25.0%
!!! CTAGGACTTTTTTTTTTGAA+GGG - chr5_1:41125273-41125292 None:intergenic 25.0%
!!! TCTAGGACTTTTTTTTTTGA+AGG - chr5_1:41125274-41125293 None:intergenic 25.0%
! AGAAGAATATGGAATTTGTA+GGG - chr5_1:41125316-41125335 None:intergenic 25.0%
!! AAGAATCTGAAACAGATAAA+TGG - chr5_1:41125490-41125509 None:intergenic 25.0%
!!! TTCAAAAGTTTTGAATGACA+AGG + chr5_1:41125508-41125527 Msa0731040:CDS 25.0%
!!! TCAAAAGTTTTGAATGACAA+GGG + chr5_1:41125509-41125528 Msa0731040:CDS 25.0%
!!! AACAATCGATTCTAAAATGT+TGG - chr5_1:41124837-41124856 None:intergenic 25.0%
! AATTAACCTATGATAAAGAG+GGG - chr5_1:41125162-41125181 None:intergenic 25.0%
! CAATTAACCTATGATAAAGA+GGG - chr5_1:41125163-41125182 None:intergenic 25.0%
! CTCTTTATCATAGGTTAATT+GGG + chr5_1:41125162-41125181 Msa0731040:intron 25.0%
!!! ACTTTTTTTTTTGAAGGGAA+TGG - chr5_1:41125268-41125287 None:intergenic 25.0%
!!! CTAGGACTTTTTTTTTTGAA+GGG - chr5_1:41125273-41125292 None:intergenic 25.0%
!!! TCTAGGACTTTTTTTTTTGA+AGG - chr5_1:41125274-41125293 None:intergenic 25.0%
! AGAAGAATATGGAATTTGTA+GGG - chr5_1:41125316-41125335 None:intergenic 25.0%
!! AAGAATCTGAAACAGATAAA+TGG - chr5_1:41125490-41125509 None:intergenic 25.0%
!!! TTCAAAAGTTTTGAATGACA+AGG + chr5_1:41125508-41125527 Msa0731040:CDS 25.0%
!!! TCAAAAGTTTTGAATGACAA+GGG + chr5_1:41125509-41125528 Msa0731040:CDS 25.0%
GTAATGATCATAAAGACACT+GGG - chr5_1:41123764-41123783 None:intergenic 30.0%
CATGAAAACAACAGAATCTT+TGG - chr5_1:41124175-41124194 None:intergenic 30.0%
TCTGCCAGAAAAAAATTAGT+TGG + chr5_1:41124201-41124220 Msa0731040:CDS 30.0%
AAAAATTAGTTGGAATTCGC+AGG + chr5_1:41124211-41124230 Msa0731040:CDS 30.0%
! GTTTGATAATTGTGTTGAAG+TGG + chr5_1:41124640-41124659 Msa0731040:intron 30.0%
! ACATTTGGAACTTATCCTAT+AGG - chr5_1:41124771-41124790 None:intergenic 30.0%
TACAATGAGAAATGCTTAGA+AGG - chr5_1:41124901-41124920 None:intergenic 30.0%
TATGATAAAGAGGGGAAAAA+TGG - chr5_1:41125154-41125173 None:intergenic 30.0%
! ATTTTTCCCCTCTTTATCAT+AGG + chr5_1:41125153-41125172 Msa0731040:intron 30.0%
CCAATTAACCTATGATAAAG+AGG - chr5_1:41125164-41125183 None:intergenic 30.0%
CCTCTTTATCATAGGTTAAT+TGG + chr5_1:41125161-41125180 Msa0731040:intron 30.0%
TTATCATAGGTTAATTGGGA+TGG + chr5_1:41125166-41125185 Msa0731040:intron 30.0%
ATACAAACATAGTCAATCCT+TGG + chr5_1:41125206-41125225 Msa0731040:CDS 30.0%
AAGAATATGGAATTTGTAGG+GGG - chr5_1:41125314-41125333 None:intergenic 30.0%
GAAGAATATGGAATTTGTAG+GGG - chr5_1:41125315-41125334 None:intergenic 30.0%
GAGAAGAATATGGAATTTGT+AGG - chr5_1:41125317-41125336 None:intergenic 30.0%
GAGTTACCTAATTCAACAAT+GGG + chr5_1:41125398-41125417 Msa0731040:CDS 30.0%
GTAATGATCATAAAGACACT+GGG - chr5_1:41123764-41123783 None:intergenic 30.0%
CATGAAAACAACAGAATCTT+TGG - chr5_1:41124175-41124194 None:intergenic 30.0%
TCTGCCAGAAAAAAATTAGT+TGG + chr5_1:41124201-41124220 Msa0731040:CDS 30.0%
AAAAATTAGTTGGAATTCGC+AGG + chr5_1:41124211-41124230 Msa0731040:CDS 30.0%
! GTTTGATAATTGTGTTGAAG+TGG + chr5_1:41124640-41124659 Msa0731040:intron 30.0%
! ACATTTGGAACTTATCCTAT+AGG - chr5_1:41124771-41124790 None:intergenic 30.0%
TACAATGAGAAATGCTTAGA+AGG - chr5_1:41124901-41124920 None:intergenic 30.0%
TATGATAAAGAGGGGAAAAA+TGG - chr5_1:41125154-41125173 None:intergenic 30.0%
! ATTTTTCCCCTCTTTATCAT+AGG + chr5_1:41125153-41125172 Msa0731040:intron 30.0%
CCAATTAACCTATGATAAAG+AGG - chr5_1:41125164-41125183 None:intergenic 30.0%
CCTCTTTATCATAGGTTAAT+TGG + chr5_1:41125161-41125180 Msa0731040:intron 30.0%
TTATCATAGGTTAATTGGGA+TGG + chr5_1:41125166-41125185 Msa0731040:intron 30.0%
ATACAAACATAGTCAATCCT+TGG + chr5_1:41125206-41125225 Msa0731040:CDS 30.0%
AAGAATATGGAATTTGTAGG+GGG - chr5_1:41125314-41125333 None:intergenic 30.0%
GAAGAATATGGAATTTGTAG+GGG - chr5_1:41125315-41125334 None:intergenic 30.0%
GAGAAGAATATGGAATTTGT+AGG - chr5_1:41125317-41125336 None:intergenic 30.0%
GAGTTACCTAATTCAACAAT+GGG + chr5_1:41125398-41125417 Msa0731040:CDS 30.0%
GGTAATGATCATAAAGACAC+TGG - chr5_1:41123765-41123784 None:intergenic 35.0%
!! TGTTGTGAGAGTTTTGACAT+AGG - chr5_1:41123962-41123981 None:intergenic 35.0%
!!! GGTTTTGAATGTAGTGGAAT+TGG + chr5_1:41124293-41124312 Msa0731040:CDS 35.0%
! TTTGAATGTAGTGGAATTGG+CGG + chr5_1:41124296-41124315 Msa0731040:CDS 35.0%
TTGTGTATTATCCAACAGCT+AGG + chr5_1:41124340-41124359 Msa0731040:CDS 35.0%
ATTATCCAACAGCTAGGAAA+TGG + chr5_1:41124346-41124365 Msa0731040:CDS 35.0%
! GAAATGGTGTGATTTTGTGA+TGG + chr5_1:41124362-41124381 Msa0731040:CDS 35.0%
!!! TGATTTTGTGATGGATGCTA+AGG + chr5_1:41124371-41124390 Msa0731040:CDS 35.0%
GTAGATGATTCCATGAAGAT+TGG + chr5_1:41124396-41124415 Msa0731040:CDS 35.0%
ATGATTCCATGAAGATTGGT+TGG + chr5_1:41124400-41124419 Msa0731040:CDS 35.0%
! TGATTCCATGAAGATTGGTT+GGG + chr5_1:41124401-41124420 Msa0731040:CDS 35.0%
AGTCAAACTTACGTTGAAGA+AGG + chr5_1:41124437-41124456 Msa0731040:CDS 35.0%
GGATGAGTCTTCAAATTCAA+AGG + chr5_1:41124458-41124477 Msa0731040:CDS 35.0%
! AAAGGCATATTATCAGCCTA+AGG + chr5_1:41124476-41124495 Msa0731040:CDS 35.0%
AAGGCATATTATCAGCCTAA+GGG + chr5_1:41124477-41124496 Msa0731040:CDS 35.0%
ATTCTTCCAATGTCCCTAAT+TGG + chr5_1:41124523-41124542 Msa0731040:CDS 35.0%
ACTTCGTAGATTCTTCTGTT+TGG + chr5_1:41124725-41124744 Msa0731040:intron 35.0%
!! CGATTCTAAAATGTTGGAGA+TGG - chr5_1:41124831-41124850 None:intergenic 35.0%
TCTCATTGTAAACACTCCTA+TGG + chr5_1:41124911-41124930 Msa0731040:intron 35.0%
AGAATATGGAATTTGTAGGG+GGG - chr5_1:41125313-41125332 None:intergenic 35.0%
GTAATTGACGGAGAAGAATA+TGG - chr5_1:41125327-41125346 None:intergenic 35.0%
! TTCCCTTTTCATTGCTATGT+AGG + chr5_1:41125376-41125395 Msa0731040:intron 35.0%
CTCCTACATAGCAATGAAAA+GGG - chr5_1:41125381-41125400 None:intergenic 35.0%
ACTCCTACATAGCAATGAAA+AGG - chr5_1:41125382-41125401 None:intergenic 35.0%
GGAGTTACCTAATTCAACAA+TGG + chr5_1:41125397-41125416 Msa0731040:intron 35.0%
AAGGATCCCATTGTTGAATT+AGG - chr5_1:41125407-41125426 None:intergenic 35.0%
TATCAGAATCCAACCATGTT+TGG - chr5_1:41125433-41125452 None:intergenic 35.0%
!!! GATTCTGATACTTTTTCAGC+TGG + chr5_1:41125443-41125462 Msa0731040:CDS 35.0%
GGTAATGATCATAAAGACAC+TGG - chr5_1:41123765-41123784 None:intergenic 35.0%
!! TGTTGTGAGAGTTTTGACAT+AGG - chr5_1:41123962-41123981 None:intergenic 35.0%
!!! GGTTTTGAATGTAGTGGAAT+TGG + chr5_1:41124293-41124312 Msa0731040:CDS 35.0%
! TTTGAATGTAGTGGAATTGG+CGG + chr5_1:41124296-41124315 Msa0731040:CDS 35.0%
TTGTGTATTATCCAACAGCT+AGG + chr5_1:41124340-41124359 Msa0731040:CDS 35.0%
ATTATCCAACAGCTAGGAAA+TGG + chr5_1:41124346-41124365 Msa0731040:CDS 35.0%
! GAAATGGTGTGATTTTGTGA+TGG + chr5_1:41124362-41124381 Msa0731040:CDS 35.0%
!!! TGATTTTGTGATGGATGCTA+AGG + chr5_1:41124371-41124390 Msa0731040:CDS 35.0%
GTAGATGATTCCATGAAGAT+TGG + chr5_1:41124396-41124415 Msa0731040:CDS 35.0%
ATGATTCCATGAAGATTGGT+TGG + chr5_1:41124400-41124419 Msa0731040:CDS 35.0%
! TGATTCCATGAAGATTGGTT+GGG + chr5_1:41124401-41124420 Msa0731040:CDS 35.0%
AGTCAAACTTACGTTGAAGA+AGG + chr5_1:41124437-41124456 Msa0731040:CDS 35.0%
GGATGAGTCTTCAAATTCAA+AGG + chr5_1:41124458-41124477 Msa0731040:CDS 35.0%
! AAAGGCATATTATCAGCCTA+AGG + chr5_1:41124476-41124495 Msa0731040:CDS 35.0%
AAGGCATATTATCAGCCTAA+GGG + chr5_1:41124477-41124496 Msa0731040:CDS 35.0%
ATTCTTCCAATGTCCCTAAT+TGG + chr5_1:41124523-41124542 Msa0731040:CDS 35.0%
ACTTCGTAGATTCTTCTGTT+TGG + chr5_1:41124725-41124744 Msa0731040:intron 35.0%
!! CGATTCTAAAATGTTGGAGA+TGG - chr5_1:41124831-41124850 None:intergenic 35.0%
TCTCATTGTAAACACTCCTA+TGG + chr5_1:41124911-41124930 Msa0731040:intron 35.0%
AGAATATGGAATTTGTAGGG+GGG - chr5_1:41125313-41125332 None:intergenic 35.0%
GTAATTGACGGAGAAGAATA+TGG - chr5_1:41125327-41125346 None:intergenic 35.0%
! TTCCCTTTTCATTGCTATGT+AGG + chr5_1:41125376-41125395 Msa0731040:intron 35.0%
CTCCTACATAGCAATGAAAA+GGG - chr5_1:41125381-41125400 None:intergenic 35.0%
ACTCCTACATAGCAATGAAA+AGG - chr5_1:41125382-41125401 None:intergenic 35.0%
GGAGTTACCTAATTCAACAA+TGG + chr5_1:41125397-41125416 Msa0731040:intron 35.0%
AAGGATCCCATTGTTGAATT+AGG - chr5_1:41125407-41125426 None:intergenic 35.0%
TATCAGAATCCAACCATGTT+TGG - chr5_1:41125433-41125452 None:intergenic 35.0%
!!! GATTCTGATACTTTTTCAGC+TGG + chr5_1:41125443-41125462 Msa0731040:CDS 35.0%
GAAATGATGCATGGAAAGGA+TGG - chr5_1:41123790-41123809 None:intergenic 40.0%
TTTCCATGCATCATTTCAGC+CGG + chr5_1:41123793-41123812 Msa0731040:CDS 40.0%
!! AGTGAGAGCATCAACAAATC+CGG - chr5_1:41123815-41123834 None:intergenic 40.0%
GATCTTTCCAAAGCTTGACT+TGG + chr5_1:41124029-41124048 Msa0731040:CDS 40.0%
!!! CCATTCTTGGCTTTTAAGGT+CGG - chr5_1:41124079-41124098 None:intergenic 40.0%
CGACCTTAAAAGCCAAGAAT+GGG + chr5_1:41124077-41124096 Msa0731040:CDS 40.0%
GACCTTAAAAGCCAAGAATG+GGG + chr5_1:41124078-41124097 Msa0731040:CDS 40.0%
ACCTTAAAAGCCAAGAATGG+GGG + chr5_1:41124079-41124098 Msa0731040:CDS 40.0%
TAGTCTACTGAGTTTCACGT+AGG - chr5_1:41124109-41124128 None:intergenic 40.0%
AAACTCAGTAGACTACGTAC+TGG + chr5_1:41124114-41124133 Msa0731040:CDS 40.0%
CAGGAATTTAACTGAGAGTG+CGG + chr5_1:41124272-41124291 Msa0731040:CDS 40.0%
AGATTCCCAACCAATCTTCA+TGG - chr5_1:41124409-41124428 None:intergenic 40.0%
! ATGAAGATTGGTTGGGAATC+TGG + chr5_1:41124408-41124427 Msa0731040:CDS 40.0%
AGGCATATTATCAGCCTAAG+GGG + chr5_1:41124478-41124497 Msa0731040:CDS 40.0%
AATGTGCCAATTAGGGACAT+TGG - chr5_1:41124532-41124551 None:intergenic 40.0%
CCTCAAGAATGTGCCAATTA+GGG - chr5_1:41124539-41124558 None:intergenic 40.0%
ACCTCAAGAATGTGCCAATT+AGG - chr5_1:41124540-41124559 None:intergenic 40.0%
!! AAGCTAGCTTTGTGTCCTAT+AGG + chr5_1:41124753-41124772 Msa0731040:intron 40.0%
AAACACTCCTATGGCTAAGT+AGG + chr5_1:41124920-41124939 Msa0731040:intron 40.0%
TCAAGATCCTACTTAGCCAT+AGG - chr5_1:41124930-41124949 None:intergenic 40.0%
AAACATAGTCAATCCTTGGC+AGG + chr5_1:41125210-41125229 Msa0731040:CDS 40.0%
GGGAATGGTATATCTAGTGA+AGG - chr5_1:41125253-41125272 None:intergenic 40.0%
TATTGAGGCACGGTAATTGA+CGG - chr5_1:41125339-41125358 None:intergenic 40.0%
ATAGCAATGAAAAGGGAAGC+TGG - chr5_1:41125374-41125393 None:intergenic 40.0%
ATCCTTGAACCAAACATGGT+TGG + chr5_1:41125421-41125440 Msa0731040:CDS 40.0%
! ATCCAACCATGTTTGGTTCA+AGG - chr5_1:41125426-41125445 None:intergenic 40.0%
!! GTTTTGAATGACAAGGGTGA+TGG + chr5_1:41125515-41125534 Msa0731040:CDS 40.0%
TTTCATCGGGAACAGTACAA+TGG + chr5_1:41125538-41125557 Msa0731040:CDS 40.0%
TCTGACACAGAGCTATACAT+TGG + chr5_1:41125581-41125600 Msa0731040:CDS 40.0%
GAAATGATGCATGGAAAGGA+TGG - chr5_1:41123790-41123809 None:intergenic 40.0%
TTTCCATGCATCATTTCAGC+CGG + chr5_1:41123793-41123812 Msa0731040:CDS 40.0%
!! AGTGAGAGCATCAACAAATC+CGG - chr5_1:41123815-41123834 None:intergenic 40.0%
GATCTTTCCAAAGCTTGACT+TGG + chr5_1:41124029-41124048 Msa0731040:CDS 40.0%
!!! CCATTCTTGGCTTTTAAGGT+CGG - chr5_1:41124079-41124098 None:intergenic 40.0%
CGACCTTAAAAGCCAAGAAT+GGG + chr5_1:41124077-41124096 Msa0731040:CDS 40.0%
GACCTTAAAAGCCAAGAATG+GGG + chr5_1:41124078-41124097 Msa0731040:CDS 40.0%
ACCTTAAAAGCCAAGAATGG+GGG + chr5_1:41124079-41124098 Msa0731040:CDS 40.0%
TAGTCTACTGAGTTTCACGT+AGG - chr5_1:41124109-41124128 None:intergenic 40.0%
AAACTCAGTAGACTACGTAC+TGG + chr5_1:41124114-41124133 Msa0731040:CDS 40.0%
CAGGAATTTAACTGAGAGTG+CGG + chr5_1:41124272-41124291 Msa0731040:CDS 40.0%
AGATTCCCAACCAATCTTCA+TGG - chr5_1:41124409-41124428 None:intergenic 40.0%
! ATGAAGATTGGTTGGGAATC+TGG + chr5_1:41124408-41124427 Msa0731040:CDS 40.0%
AGGCATATTATCAGCCTAAG+GGG + chr5_1:41124478-41124497 Msa0731040:CDS 40.0%
AATGTGCCAATTAGGGACAT+TGG - chr5_1:41124532-41124551 None:intergenic 40.0%
CCTCAAGAATGTGCCAATTA+GGG - chr5_1:41124539-41124558 None:intergenic 40.0%
ACCTCAAGAATGTGCCAATT+AGG - chr5_1:41124540-41124559 None:intergenic 40.0%
!! AAGCTAGCTTTGTGTCCTAT+AGG + chr5_1:41124753-41124772 Msa0731040:intron 40.0%
AAACACTCCTATGGCTAAGT+AGG + chr5_1:41124920-41124939 Msa0731040:intron 40.0%
TCAAGATCCTACTTAGCCAT+AGG - chr5_1:41124930-41124949 None:intergenic 40.0%
AAACATAGTCAATCCTTGGC+AGG + chr5_1:41125210-41125229 Msa0731040:CDS 40.0%
GGGAATGGTATATCTAGTGA+AGG - chr5_1:41125253-41125272 None:intergenic 40.0%
TATTGAGGCACGGTAATTGA+CGG - chr5_1:41125339-41125358 None:intergenic 40.0%
ATAGCAATGAAAAGGGAAGC+TGG - chr5_1:41125374-41125393 None:intergenic 40.0%
ATCCTTGAACCAAACATGGT+TGG + chr5_1:41125421-41125440 Msa0731040:CDS 40.0%
! ATCCAACCATGTTTGGTTCA+AGG - chr5_1:41125426-41125445 None:intergenic 40.0%
!! GTTTTGAATGACAAGGGTGA+TGG + chr5_1:41125515-41125534 Msa0731040:CDS 40.0%
TTTCATCGGGAACAGTACAA+TGG + chr5_1:41125538-41125557 Msa0731040:CDS 40.0%
TCTGACACAGAGCTATACAT+TGG + chr5_1:41125581-41125600 Msa0731040:CDS 40.0%
TGATGCATGGAAAGGATGGA+CGG - chr5_1:41123786-41123805 None:intergenic 45.0%
GGCTGAAATGATGCATGGAA+AGG - chr5_1:41123794-41123813 None:intergenic 45.0%
AATCCGGCTGAAATGATGCA+TGG - chr5_1:41123799-41123818 None:intergenic 45.0%
TGTTGATGCTCTCACTGATG+AGG + chr5_1:41123819-41123838 Msa0731040:CDS 45.0%
TCTTCTTGGCCAGGAATAAC+AGG - chr5_1:41123919-41123938 None:intergenic 45.0%
TGTTTCCATCGTCGTCTTCT+TGG - chr5_1:41123933-41123952 None:intergenic 45.0%
ATCAAGTCAGCGCATTCATG+AGG - chr5_1:41124012-41124031 None:intergenic 45.0%
GACTTCACCAAGTCAAGCTT+TGG - chr5_1:41124039-41124058 None:intergenic 45.0%
CCGACCTTAAAAGCCAAGAA+TGG + chr5_1:41124076-41124095 Msa0731040:CDS 45.0%
!! ACCCCCATTCTTGGCTTTTA+AGG - chr5_1:41124083-41124102 None:intergenic 45.0%
! TTTCACCTGTTTCAGGTGCA+GGG - chr5_1:41124248-41124267 None:intergenic 45.0%
!!! GAGTGCGGTTTTGAATGTAG+TGG + chr5_1:41124287-41124306 Msa0731040:CDS 45.0%
TCACACCATTTCCTAGCTGT+TGG - chr5_1:41124354-41124373 None:intergenic 45.0%
ACAGTAGAGATTGTCCCCTT+AGG - chr5_1:41124495-41124514 None:intergenic 45.0%
CCCTAATTGGCACATTCTTG+AGG + chr5_1:41124536-41124555 Msa0731040:CDS 45.0%
GTTGGAGATGGAGACTCTAA+TGG - chr5_1:41124819-41124838 None:intergenic 45.0%
GAAGAACACTGAGCATGTCT+AGG - chr5_1:41125291-41125310 None:intergenic 45.0%
TGGGATCCTTGAACCAAACA+TGG + chr5_1:41125417-41125436 Msa0731040:CDS 45.0%
!!! TACTTTTTCAGCTGGCATGC+AGG + chr5_1:41125451-41125470 Msa0731040:CDS 45.0%
!!! ACTTTTTCAGCTGGCATGCA+GGG + chr5_1:41125452-41125471 Msa0731040:CDS 45.0%
AACAGATAAATGGTCGTGCC+TGG - chr5_1:41125480-41125499 None:intergenic 45.0%
! GACAAGGGTGATGGTTTCAT+CGG + chr5_1:41125524-41125543 Msa0731040:CDS 45.0%
! ACAAGGGTGATGGTTTCATC+GGG + chr5_1:41125525-41125544 Msa0731040:CDS 45.0%
AGTACAATGGCAGGGTTTAG+TGG + chr5_1:41125551-41125570 Msa0731040:CDS 45.0%
! GGCAAGAAGTCAGCTGATTT+AGG - chr5_1:41125611-41125630 None:intergenic 45.0%
TGATGCATGGAAAGGATGGA+CGG - chr5_1:41123786-41123805 None:intergenic 45.0%
GGCTGAAATGATGCATGGAA+AGG - chr5_1:41123794-41123813 None:intergenic 45.0%
AATCCGGCTGAAATGATGCA+TGG - chr5_1:41123799-41123818 None:intergenic 45.0%
TGTTGATGCTCTCACTGATG+AGG + chr5_1:41123819-41123838 Msa0731040:CDS 45.0%
TCTTCTTGGCCAGGAATAAC+AGG - chr5_1:41123919-41123938 None:intergenic 45.0%
TGTTTCCATCGTCGTCTTCT+TGG - chr5_1:41123933-41123952 None:intergenic 45.0%
ATCAAGTCAGCGCATTCATG+AGG - chr5_1:41124012-41124031 None:intergenic 45.0%
GACTTCACCAAGTCAAGCTT+TGG - chr5_1:41124039-41124058 None:intergenic 45.0%
CCGACCTTAAAAGCCAAGAA+TGG + chr5_1:41124076-41124095 Msa0731040:CDS 45.0%
!! ACCCCCATTCTTGGCTTTTA+AGG - chr5_1:41124083-41124102 None:intergenic 45.0%
! TTTCACCTGTTTCAGGTGCA+GGG - chr5_1:41124248-41124267 None:intergenic 45.0%
!!! GAGTGCGGTTTTGAATGTAG+TGG + chr5_1:41124287-41124306 Msa0731040:CDS 45.0%
TCACACCATTTCCTAGCTGT+TGG - chr5_1:41124354-41124373 None:intergenic 45.0%
ACAGTAGAGATTGTCCCCTT+AGG - chr5_1:41124495-41124514 None:intergenic 45.0%
CCCTAATTGGCACATTCTTG+AGG + chr5_1:41124536-41124555 Msa0731040:CDS 45.0%
GTTGGAGATGGAGACTCTAA+TGG - chr5_1:41124819-41124838 None:intergenic 45.0%
GAAGAACACTGAGCATGTCT+AGG - chr5_1:41125291-41125310 None:intergenic 45.0%
TGGGATCCTTGAACCAAACA+TGG + chr5_1:41125417-41125436 Msa0731040:CDS 45.0%
!!! TACTTTTTCAGCTGGCATGC+AGG + chr5_1:41125451-41125470 Msa0731040:CDS 45.0%
!!! ACTTTTTCAGCTGGCATGCA+GGG + chr5_1:41125452-41125471 Msa0731040:CDS 45.0%
AACAGATAAATGGTCGTGCC+TGG - chr5_1:41125480-41125499 None:intergenic 45.0%
! GACAAGGGTGATGGTTTCAT+CGG + chr5_1:41125524-41125543 Msa0731040:CDS 45.0%
! ACAAGGGTGATGGTTTCATC+GGG + chr5_1:41125525-41125544 Msa0731040:CDS 45.0%
AGTACAATGGCAGGGTTTAG+TGG + chr5_1:41125551-41125570 Msa0731040:CDS 45.0%
! GGCAAGAAGTCAGCTGATTT+AGG - chr5_1:41125611-41125630 None:intergenic 45.0%
CATGCATGTCGTTCCCCTAA+CGG + chr5_1:41123727-41123746 Msa0731040:CDS 50.0%
GGAGATTGTGACACCGTTAG+GGG - chr5_1:41123743-41123762 None:intergenic 50.0%
GGGAGATTGTGACACCGTTA+GGG - chr5_1:41123744-41123763 None:intergenic 50.0%
TGGGAGATTGTGACACCGTT+AGG - chr5_1:41123745-41123764 None:intergenic 50.0%
TCTTGGCCAGGAATAACAGG+AGG - chr5_1:41123916-41123935 None:intergenic 50.0%
! TCAGTAGACTACGTACTGGC+TGG + chr5_1:41124118-41124137 Msa0731040:CDS 50.0%
AACTTCCCTGCACCTGAAAC+AGG + chr5_1:41124240-41124259 Msa0731040:CDS 50.0%
! CTTTCACCTGTTTCAGGTGC+AGG - chr5_1:41124249-41124268 None:intergenic 50.0%
GCACCTGAAACAGGTGAAAG+AGG + chr5_1:41124249-41124268 Msa0731040:CDS 50.0%
CTGCCTCTTTCACCTGTTTC+AGG - chr5_1:41124255-41124274 None:intergenic 50.0%
CTGAAACAGGTGAAAGAGGC+AGG + chr5_1:41124253-41124272 Msa0731040:CDS 50.0%
! GGAATTGGCGGACAAGAACA+TGG + chr5_1:41124308-41124327 Msa0731040:CDS 50.0%
TTGCAAGCTTCAACCTGCCA+AGG - chr5_1:41125226-41125245 None:intergenic 50.0%
AAAAGGGAAGCTGGTGGTAG+AGG - chr5_1:41125365-41125384 None:intergenic 50.0%
GCAATGAAAAGGGAAGCTGG+TGG - chr5_1:41125371-41125390 None:intergenic 50.0%
ATCGGGAACAGTACAATGGC+AGG + chr5_1:41125542-41125561 Msa0731040:CDS 50.0%
TCGGGAACAGTACAATGGCA+GGG + chr5_1:41125543-41125562 Msa0731040:CDS 50.0%
CATGCATGTCGTTCCCCTAA+CGG + chr5_1:41123727-41123746 Msa0731040:CDS 50.0%
GGAGATTGTGACACCGTTAG+GGG - chr5_1:41123743-41123762 None:intergenic 50.0%
GGGAGATTGTGACACCGTTA+GGG - chr5_1:41123744-41123763 None:intergenic 50.0%
TGGGAGATTGTGACACCGTT+AGG - chr5_1:41123745-41123764 None:intergenic 50.0%
TCTTGGCCAGGAATAACAGG+AGG - chr5_1:41123916-41123935 None:intergenic 50.0%
! TCAGTAGACTACGTACTGGC+TGG + chr5_1:41124118-41124137 Msa0731040:CDS 50.0%
AACTTCCCTGCACCTGAAAC+AGG + chr5_1:41124240-41124259 Msa0731040:CDS 50.0%
! CTTTCACCTGTTTCAGGTGC+AGG - chr5_1:41124249-41124268 None:intergenic 50.0%
GCACCTGAAACAGGTGAAAG+AGG + chr5_1:41124249-41124268 Msa0731040:CDS 50.0%
CTGCCTCTTTCACCTGTTTC+AGG - chr5_1:41124255-41124274 None:intergenic 50.0%
CTGAAACAGGTGAAAGAGGC+AGG + chr5_1:41124253-41124272 Msa0731040:CDS 50.0%
! GGAATTGGCGGACAAGAACA+TGG + chr5_1:41124308-41124327 Msa0731040:CDS 50.0%
TTGCAAGCTTCAACCTGCCA+AGG - chr5_1:41125226-41125245 None:intergenic 50.0%
AAAAGGGAAGCTGGTGGTAG+AGG - chr5_1:41125365-41125384 None:intergenic 50.0%
GCAATGAAAAGGGAAGCTGG+TGG - chr5_1:41125371-41125390 None:intergenic 50.0%
ATCGGGAACAGTACAATGGC+AGG + chr5_1:41125542-41125561 Msa0731040:CDS 50.0%
TCGGGAACAGTACAATGGCA+GGG + chr5_1:41125543-41125562 Msa0731040:CDS 50.0%
TGCCAAACTGCTCCTCACTC+CGG + chr5_1:41123846-41123865 Msa0731040:CDS 55.0%
TACCGGAGTGAGGAGCAGTT+TGG - chr5_1:41123851-41123870 None:intergenic 55.0%
GGAGGATCTTGGGCAGTTAC+CGG - chr5_1:41123868-41123887 None:intergenic 55.0%
AGGAGGAGGAGGAGGATCTT+GGG - chr5_1:41123878-41123897 None:intergenic 55.0%
ATAACAGGAGGAGGAGGAGG+AGG - chr5_1:41123904-41123923 None:intergenic 55.0%
GGAATAACAGGAGGAGGAGG+AGG - chr5_1:41123907-41123926 None:intergenic 55.0%
CCAGGAATAACAGGAGGAGG+AGG - chr5_1:41123910-41123929 None:intergenic 55.0%
CCTCCTCCTCCTGTTATTCC+TGG + chr5_1:41123907-41123926 Msa0731040:CDS 55.0%
TGGCCAGGAATAACAGGAGG+AGG - chr5_1:41123913-41123932 None:intergenic 55.0%
! GTAGAGGCGGTATTGAGGCA+CGG - chr5_1:41125349-41125368 None:intergenic 55.0%
TGGTGGTAGAGGCGGTATTG+AGG - chr5_1:41125354-41125373 None:intergenic 55.0%
TGCCAAACTGCTCCTCACTC+CGG + chr5_1:41123846-41123865 Msa0731040:CDS 55.0%
TACCGGAGTGAGGAGCAGTT+TGG - chr5_1:41123851-41123870 None:intergenic 55.0%
GGAGGATCTTGGGCAGTTAC+CGG - chr5_1:41123868-41123887 None:intergenic 55.0%
AGGAGGAGGAGGAGGATCTT+GGG - chr5_1:41123878-41123897 None:intergenic 55.0%
ATAACAGGAGGAGGAGGAGG+AGG - chr5_1:41123904-41123923 None:intergenic 55.0%
GGAATAACAGGAGGAGGAGG+AGG - chr5_1:41123907-41123926 None:intergenic 55.0%
CCAGGAATAACAGGAGGAGG+AGG - chr5_1:41123910-41123929 None:intergenic 55.0%
CCTCCTCCTCCTGTTATTCC+TGG + chr5_1:41123907-41123926 Msa0731040:CDS 55.0%
TGGCCAGGAATAACAGGAGG+AGG - chr5_1:41123913-41123932 None:intergenic 55.0%
! GTAGAGGCGGTATTGAGGCA+CGG - chr5_1:41125349-41125368 None:intergenic 55.0%
TGGTGGTAGAGGCGGTATTG+AGG - chr5_1:41125354-41125373 None:intergenic 55.0%
CTTGGGCAGTTACCGGAGTG+AGG - chr5_1:41123861-41123880 None:intergenic 60.0%
GAGGAGGAGGAGGAGGATCT+TGG - chr5_1:41123879-41123898 None:intergenic 60.0%
CCATCGTCGTCTTCTTGGCC+AGG - chr5_1:41123928-41123947 None:intergenic 60.0%
CCTGGCCAAGAAGACGACGA+TGG + chr5_1:41123925-41123944 Msa0731040:CDS 60.0%
CGTAGGTGCACCCCCATTCT+TGG - chr5_1:41124092-41124111 None:intergenic 60.0%
AGGGAAGCTGGTGGTAGAGG+CGG - chr5_1:41125362-41125381 None:intergenic 60.0%
CTTGGGCAGTTACCGGAGTG+AGG - chr5_1:41123861-41123880 None:intergenic 60.0%
GAGGAGGAGGAGGAGGATCT+TGG - chr5_1:41123879-41123898 None:intergenic 60.0%
CCATCGTCGTCTTCTTGGCC+AGG - chr5_1:41123928-41123947 None:intergenic 60.0%
CCTGGCCAAGAAGACGACGA+TGG + chr5_1:41123925-41123944 Msa0731040:CDS 60.0%
CGTAGGTGCACCCCCATTCT+TGG - chr5_1:41124092-41124111 None:intergenic 60.0%
AGGGAAGCTGGTGGTAGAGG+CGG - chr5_1:41125362-41125381 None:intergenic 60.0%
ACAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123901-41123920 None:intergenic 65.0%
ACAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123901-41123920 None:intergenic 65.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
CAGCTGGCATGCAGGGAGCC+AGG + chr5_1:41125459-41125478 Msa0731040:CDS 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
GGAGGAGGAGGAGGAGGAGG+AGG - chr5_1:41123883-41123902 None:intergenic 70.0%
CAGCTGGCATGCAGGGAGCC+AGG + chr5_1:41125459-41125478 Msa0731040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 41123721 41125637 41123721 ID=Msa0731040;Name=Msa0731040
chr5_1 mRNA 41123721 41125637 41123721 ID=Msa0731040-mRNA-1;Parent=Msa0731040;Name=Msa0731040-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0|0|1|1|1|3|0|377
chr5_1 exon 41123721 41124557 41123721 ID=Msa0731040-mRNA-1:exon:11989;Parent=Msa0731040-mRNA-1
chr5_1 exon 41125175 41125231 41125175 ID=Msa0731040-mRNA-1:exon:11990;Parent=Msa0731040-mRNA-1
chr5_1 exon 41125398 41125637 41125398 ID=Msa0731040-mRNA-1:exon:11991;Parent=Msa0731040-mRNA-1
chr5_1 CDS 41123721 41124557 41123721 ID=Msa0731040-mRNA-1:cds;Parent=Msa0731040-mRNA-1
chr5_1 CDS 41125175 41125231 41125175 ID=Msa0731040-mRNA-1:cds;Parent=Msa0731040-mRNA-1
chr5_1 CDS 41125398 41125637 41125398 ID=Msa0731040-mRNA-1:cds;Parent=Msa0731040-mRNA-1
Gene Sequence

>Msa0731040

TTGGAACATGCATGTCGTTCCCCTAACGGTGTCACAATCTCCCAGTGTCTTTATGATCATTACCGTCCATCCTTTCCATGCATCATTTCAGCCGGATTTGTTGATGCTCTCACTGATGAGGTTTTTGCCAAACTGCTCCTCACTCCGGTAACTGCCCAAGATCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTGTTATTCCTGGCCAAGAAGACGACGATGGAAACAATCTTTCCTATGTCAAAACTCTCACAACAACTGATACTAAATCTGTATTCAATATACCTCATGAATGCGCTGACTTGATCTTTCCAAAGCTTGACTTGGTGAAGTCTCAAAACATCACTGTCACCGACCTTAAAAGCCAAGAATGGGGGTGCACCTACGTGAAACTCAGTAGACTACGTACTGGCTGGTCTCACTTTGTGAAAGAGAAGAAACTCGTCGCCAAAGATTCTGTTGTTTTCATGAAAAACTCTGCCAGAAAAAAATTAGTTGGAATTCGCAGGAACACTAACTTCCCTGCACCTGAAACAGGTGAAAGAGGCAGGAATTTAACTGAGAGTGCGGTTTTGAATGTAGTGGAATTGGCGGACAAGAACATGGAGTTTGAAGTTGTGTATTATCCAACAGCTAGGAAATGGTGTGATTTTGTGATGGATGCTAAGGTTGTAGATGATTCCATGAAGATTGGTTGGGAATCTGGAATTAGAGTCAAACTTACGTTGAAGAAGGATGAGTCTTCAAATTCAAAGGCATATTATCAGCCTAAGGGGACAATCTCTACTGTCTTTAATTATTCTTCCAATGTCCCTAATTGGCACATTCTTGAGGTTAATTGGGATGGACCTAAAATCTTGCAAAATACAAACATAGTCAATCCTTGGCAGGAGTTACCTAATTCAACAATGGGATCCTTGAACCAAACATGGTTGGATTCTGATACTTTTTCAGCTGGCATGCAGGGAGCCAGGCACGACCATTTATCTGTTTCAGATTCTTCAAAAGTTTTGAATGACAAGGGTGATGGTTTCATCGGGAACAGTACAATGGCAGGGTTTAGTGGTACTTTGTCTGACACAGAGCTATACATTGGCAGTCCTAAATCAGCTGACTTCTTGCCTCAATGA
Protein sequence

>Msa0731040

LEHACRSPNGVTISQCLYDHYRPSFPCIISAGFVDALTDEVFAKLLLTPVTAQDPPPPPPPPPPPPVIPGQEDDDGNNLSYVKTLTTTDTKSVFNIPHECADLIFPKLDLVKSQNITVTDLKSQEWGCTYVKLSRLRTGWSHFVKEKKLVAKDSVVFMKNSARKKLVGIRRNTNFPAPETGERGRNLTESAVLNVVELADKNMEFEVVYYPTARKWCDFVMDAKVVDDSMKIGWESGIRVKLTLKKDESSNSKAYYQPKGTISTVFNYSSNVPNWHILEVNWDGPKILQNTNIVNPWQELPNSTMGSLNQTWLDSDTFSAGMQGARHDHLSVSDSSKVLNDKGDGFIGNSTMAGFSGTLSDTELYIGSPKSADFLPQ*