Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732230 | MCI31907.1 | 73.134 | 67 | 18 | 0 | 79 | 145 | 1 | 67 | 1.62e-23 | 99.8 |
| Msa0732230 | MCI31907.1 | 86.275 | 51 | 7 | 0 | 1 | 51 | 49 | 99 | 7.90e-22 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732230 | sp|Q9SIT1|TMK3_ARATH | 65.714 | 70 | 24 | 0 | 76 | 145 | 568 | 637 | 3.56e-21 | 92.4 |
| Msa0732230 | sp|Q9SIT1|TMK3_ARATH | 72.549 | 51 | 14 | 0 | 1 | 51 | 619 | 669 | 1.39e-18 | 84.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732230 | A0A392R6P3 | 73.134 | 67 | 18 | 0 | 79 | 145 | 1 | 67 | 7.73e-24 | 99.8 |
| Msa0732230 | A0A392R6P3 | 86.275 | 51 | 7 | 0 | 1 | 51 | 49 | 99 | 3.77e-22 | 95.5 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732230 | MtrunA17_Chr5g0427001 | 59.091 | 88 | 28 | 2 | 66 | 145 | 34 | 121 | 1.50e-24 | 95.5 |
| Msa0732230 | MtrunA17_Chr5g0427001 | 78.431 | 51 | 11 | 0 | 1 | 51 | 103 | 153 | 6.18e-22 | 88.6 |
| Msa0732230 | MtrunA17_Chr1g0161711 | 68.571 | 70 | 22 | 0 | 76 | 145 | 556 | 625 | 8.00e-24 | 96.7 |
| Msa0732230 | MtrunA17_Chr1g0161711 | 78.431 | 51 | 11 | 0 | 1 | 51 | 607 | 657 | 4.86e-22 | 91.7 |
| Msa0732230 | MtrunA17_Chr1g0161721 | 68.571 | 70 | 22 | 0 | 76 | 145 | 563 | 632 | 3.19e-23 | 95.1 |
| Msa0732230 | MtrunA17_Chr1g0161721 | 80.392 | 51 | 10 | 0 | 1 | 51 | 614 | 664 | 2.50e-22 | 92.4 |
| Msa0732230 | MtrunA17_Chr1g0161701 | 62.025 | 79 | 26 | 1 | 71 | 145 | 552 | 630 | 3.41e-23 | 94.7 |
| Msa0732230 | MtrunA17_Chr1g0161701 | 78.431 | 51 | 11 | 0 | 1 | 51 | 612 | 662 | 1.38e-21 | 90.1 |
| Msa0732230 | MtrunA17_Chr3g0121971 | 64.706 | 68 | 24 | 0 | 78 | 145 | 570 | 637 | 1.39e-21 | 90.1 |
| Msa0732230 | MtrunA17_Chr3g0121971 | 70.000 | 50 | 15 | 0 | 2 | 51 | 620 | 669 | 6.61e-19 | 82.4 |
| Msa0732230 | MtrunA17_Chr8g0377951 | 63.235 | 68 | 25 | 0 | 78 | 145 | 554 | 621 | 1.06e-20 | 87.8 |
| Msa0732230 | MtrunA17_Chr8g0377951 | 67.347 | 49 | 16 | 0 | 3 | 51 | 605 | 653 | 1.43e-17 | 78.6 |
| Msa0732230 | MtrunA17_Chr5g0434141 | 62.857 | 70 | 26 | 0 | 76 | 145 | 575 | 644 | 3.64e-19 | 83.2 |
| Msa0732230 | MtrunA17_Chr5g0434141 | 74.468 | 47 | 12 | 0 | 5 | 51 | 630 | 676 | 4.32e-17 | 77.4 |
| Msa0732230 | MtrunA17_Chr8g0392271 | 63.768 | 69 | 24 | 1 | 77 | 145 | 562 | 629 | 7.78e-19 | 82.4 |
| Msa0732230 | MtrunA17_Chr8g0392271 | 70.213 | 47 | 14 | 0 | 5 | 51 | 615 | 661 | 1.28e-15 | 73.2 |
| Msa0732230 | MtrunA17_Chr7g0267441 | 52.703 | 74 | 35 | 0 | 72 | 145 | 575 | 648 | 2.41e-18 | 80.9 |
| Msa0732230 | MtrunA17_Chr7g0267441 | 58.824 | 51 | 21 | 0 | 1 | 51 | 630 | 680 | 5.51e-15 | 71.2 |
| Msa0732230 | MtrunA17_Chr2g0321921 | 55.882 | 68 | 30 | 0 | 78 | 145 | 590 | 657 | 6.04e-18 | 79.7 |
| Msa0732230 | MtrunA17_Chr2g0321921 | 60.000 | 50 | 20 | 0 | 2 | 51 | 640 | 689 | 2.89e-15 | 72.0 |
| Msa0732230 | MtrunA17_Chr4g0025601 | 54.412 | 68 | 31 | 0 | 78 | 145 | 616 | 683 | 6.30e-18 | 79.7 |
| Msa0732230 | MtrunA17_Chr4g0025601 | 58.000 | 50 | 21 | 0 | 2 | 51 | 666 | 715 | 2.15e-14 | 69.7 |
| Msa0732230 | MtrunA17_Chr8g0354401 | 55.224 | 67 | 28 | 2 | 81 | 147 | 44 | 108 | 7.88e-15 | 66.6 |
| Msa0732230 | MtrunA17_Chr0c01g0489481 | 48.000 | 50 | 26 | 0 | 3 | 52 | 365 | 414 | 6.51e-13 | 65.1 |
| Msa0732230 | MtrunA17_Chr8g0352381 | 53.191 | 47 | 22 | 0 | 4 | 50 | 566 | 612 | 6.99e-13 | 65.1 |
| Msa0732230 | MtrunA17_Chr8g0354311 | 44.048 | 84 | 42 | 2 | 67 | 147 | 10 | 91 | 2.11e-12 | 60.5 |
| Msa0732230 | MtrunA17_Chr8g0354431 | 49.351 | 77 | 34 | 3 | 67 | 140 | 314 | 388 | 3.90e-12 | 63.2 |
| Msa0732230 | MtrunA17_Chr7g0274261 | 44.444 | 63 | 33 | 1 | 83 | 145 | 517 | 577 | 4.17e-12 | 63.2 |
| Msa0732230 | MtrunA17_Chr7g0274261 | 55.319 | 47 | 21 | 0 | 4 | 50 | 562 | 608 | 7.57e-12 | 62.4 |
| Msa0732230 | MtrunA17_Chr8g0354351 | 50.000 | 68 | 32 | 1 | 80 | 147 | 321 | 386 | 9.32e-12 | 62.0 |
| Msa0732230 | MtrunA17_Chr1g0206211 | 52.083 | 48 | 23 | 0 | 5 | 52 | 64 | 111 | 1.07e-11 | 60.1 |
| Msa0732230 | MtrunA17_Chr2g0327671 | 54.348 | 46 | 21 | 0 | 5 | 50 | 539 | 584 | 1.18e-11 | 61.6 |
| Msa0732230 | MtrunA17_Chr2g0318301 | 55.319 | 47 | 21 | 0 | 4 | 50 | 537 | 583 | 1.28e-11 | 61.6 |
| Msa0732230 | MtrunA17_Chr7g0221191 | 44.000 | 50 | 28 | 0 | 3 | 52 | 429 | 478 | 1.88e-11 | 61.2 |
| Msa0732230 | MtrunA17_Chr4g0053521 | 58.696 | 46 | 19 | 0 | 5 | 50 | 1095 | 1140 | 1.90e-11 | 61.2 |
| Msa0732230 | MtrunA17_Chr1g0190581 | 44.444 | 63 | 33 | 1 | 83 | 145 | 512 | 572 | 2.05e-11 | 60.8 |
| Msa0732230 | MtrunA17_Chr1g0190581 | 52.083 | 48 | 23 | 0 | 3 | 50 | 556 | 603 | 2.16e-11 | 60.8 |
| Msa0732230 | MtrunA17_Chr4g0048581 | 56.140 | 57 | 23 | 1 | 89 | 145 | 528 | 582 | 2.63e-11 | 60.8 |
| Msa0732230 | MtrunA17_Chr7g0245131 | 48.980 | 49 | 25 | 0 | 2 | 50 | 569 | 617 | 2.86e-11 | 60.5 |
| Msa0732230 | MtrunA17_Chr1g0206231 | 52.083 | 48 | 23 | 0 | 5 | 52 | 383 | 430 | 3.88e-11 | 60.1 |
| Msa0732230 | MtrunA17_Chr8g0354441 | 46.341 | 82 | 39 | 3 | 67 | 145 | 322 | 401 | 3.92e-11 | 60.1 |
| Msa0732230 | MtrunA17_Chr8g0354421 | 35.185 | 108 | 63 | 3 | 41 | 145 | 311 | 414 | 4.12e-11 | 60.1 |
| Msa0732230 | MtrunA17_Chr2g0292501 | 55.319 | 47 | 21 | 0 | 4 | 50 | 556 | 602 | 4.22e-11 | 60.1 |
| Msa0732230 | MtrunA17_Chr4g0053561 | 58.696 | 46 | 19 | 0 | 5 | 50 | 477 | 522 | 4.68e-11 | 60.1 |
| Msa0732230 | MtrunA17_Chr2g0323231 | 48.333 | 60 | 29 | 1 | 86 | 145 | 172 | 229 | 4.78e-11 | 59.7 |
| Msa0732230 | MtrunA17_Chr6g0475111 | 34.483 | 116 | 64 | 4 | 39 | 147 | 530 | 640 | 5.40e-11 | 59.7 |
| Msa0732230 | MtrunA17_Chr4g0030441 | 54.348 | 46 | 21 | 0 | 5 | 50 | 536 | 581 | 6.54e-11 | 59.7 |
| Msa0732230 | MtrunA17_Chr7g0219611 | 54.348 | 46 | 21 | 0 | 5 | 50 | 551 | 596 | 8.82e-11 | 59.3 |
| Msa0732230 | MtrunA17_Chr1g0206291 | 50.000 | 48 | 24 | 0 | 5 | 52 | 390 | 437 | 9.07e-11 | 58.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732230 | AT2G01820.1 | 65.714 | 70 | 24 | 0 | 76 | 145 | 568 | 637 | 3.62e-22 | 92.4 |
| Msa0732230 | AT2G01820.1 | 72.549 | 51 | 14 | 0 | 1 | 51 | 619 | 669 | 1.42e-19 | 84.7 |
| Msa0732230 | AT1G66150.1 | 47.748 | 111 | 56 | 1 | 35 | 145 | 532 | 640 | 1.58e-20 | 87.4 |
| Msa0732230 | AT1G66150.1 | 68.627 | 51 | 16 | 0 | 1 | 51 | 622 | 672 | 3.06e-17 | 78.2 |
| Msa0732230 | AT1G24650.1 | 61.429 | 70 | 27 | 0 | 76 | 145 | 530 | 599 | 3.24e-20 | 86.7 |
| Msa0732230 | AT1G24650.1 | 64.706 | 51 | 18 | 0 | 1 | 51 | 581 | 631 | 1.18e-16 | 76.6 |
| Msa0732230 | AT3G23750.1 | 57.353 | 68 | 29 | 0 | 78 | 145 | 563 | 630 | 1.32e-18 | 82.0 |
| Msa0732230 | AT3G23750.1 | 63.265 | 49 | 18 | 0 | 2 | 50 | 613 | 661 | 5.01e-16 | 74.7 |
| Msa0732230 | AT5G39000.1 | 56.000 | 50 | 22 | 0 | 1 | 50 | 551 | 600 | 1.64e-13 | 67.4 |
| Msa0732230 | AT5G38990.1 | 54.000 | 50 | 23 | 0 | 1 | 50 | 558 | 607 | 5.02e-13 | 65.9 |
| Msa0732230 | AT1G70450.1 | 33.684 | 95 | 55 | 2 | 5 | 99 | 85 | 171 | 5.86e-12 | 62.8 |
| Msa0732230 | AT5G59700.1 | 58.696 | 46 | 19 | 0 | 5 | 50 | 518 | 563 | 7.56e-12 | 62.8 |
| Msa0732230 | AT2G39360.1 | 58.696 | 46 | 19 | 0 | 5 | 50 | 523 | 568 | 1.17e-11 | 62.0 |
| Msa0732230 | AT5G38560.1 | 46.000 | 50 | 27 | 0 | 3 | 52 | 373 | 422 | 1.18e-11 | 62.0 |
| Msa0732230 | AT1G70460.1 | 47.917 | 48 | 25 | 0 | 5 | 52 | 389 | 436 | 1.23e-11 | 62.0 |
| Msa0732230 | AT5G61350.1 | 51.064 | 47 | 23 | 0 | 4 | 50 | 560 | 606 | 2.16e-11 | 61.2 |
| Msa0732230 | AT3G46290.1 | 54.348 | 46 | 21 | 0 | 5 | 50 | 521 | 566 | 2.47e-11 | 61.2 |
| Msa0732230 | AT5G54380.1 | 53.191 | 47 | 22 | 0 | 4 | 50 | 545 | 591 | 3.27e-11 | 60.8 |
| Msa0732230 | AT1G10620.1 | 43.137 | 51 | 29 | 0 | 2 | 52 | 403 | 453 | 4.02e-11 | 60.5 |
| Msa0732230 | AT5G24010.1 | 56.522 | 46 | 20 | 0 | 5 | 50 | 525 | 570 | 4.92e-11 | 60.5 |
| Msa0732230 | AT2G23200.1 | 52.174 | 46 | 22 | 0 | 5 | 50 | 524 | 569 | 6.08e-11 | 60.1 |
Find 37 sgRNAs with CRISPR-Local
Find 242 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTTGTCTCAAAACTTGAAT+TGG | 0.299756 | 5_1:-44340122 | None:intergenic |
| CGTCTGTGTGGTCACACTTC+CGG | 0.307654 | 5_1:+44340029 | Msa0732230:CDS |
| ATCCTGGGGACAGGTTGTTT+TGG | 0.326362 | 5_1:+44340170 | Msa0732230:CDS |
| GAAGAATGATTGTTGTAAAA+AGG | 0.364292 | 5_1:+44340222 | Msa0732230:CDS |
| CATGGTATACAAAGGAGAAT+TGG | 0.385816 | 5_1:+44340193 | Msa0732230:CDS |
| GAATGAGTTCAAGTCTGAAA+TGG | 0.409158 | 5_1:+44340277 | Msa0732230:CDS |
| TGAAATGGGCGTTCTTACTA+AGG | 0.427586 | 5_1:+44340292 | Msa0732230:CDS |
| GCTTTCACTAAAGTTGTTTG+TGG | 0.428019 | 5_1:-44340144 | None:intergenic |
| TAAGGTTAGACACAAGCATT+TGG | 0.442229 | 5_1:+44339155 | Msa0732230:CDS |
| TGCCTTGAGGCAGGTATTCA+AGG | 0.448005 | 5_1:-44339224 | None:intergenic |
| TGAAATGGAGGTTCTTACTA+AGG | 0.466273 | 5_1:+44339137 | Msa0732230:CDS |
| GAATGAGTTCAAGTCTGAAA+TGG | 0.471794 | 5_1:+44339122 | Msa0732230:CDS |
| AAGCATTTGGTTGCACTTCG+TGG | 0.481804 | 5_1:+44339168 | Msa0732230:CDS |
| CTTTAGTGAAAGCAACATCC+TGG | 0.497024 | 5_1:+44340154 | Msa0732230:CDS |
| AATGAGTTCAAGTCTGAAAT+GGG | 0.498425 | 5_1:+44340278 | Msa0732230:CDS |
| TGCACTTCGTGGTTATTGCT+TGG | 0.499799 | 5_1:+44339179 | Msa0732230:CDS |
| CTGAAATGGTTGGTTACAAA+GGG | 0.507642 | 5_1:+44340252 | Msa0732230:CDS |
| CACTAAGAGTGCCTTGAGGC+AGG | 0.509549 | 5_1:-44339233 | None:intergenic |
| GAAAGCAACATCCTGGGGAC+AGG | 0.517903 | 5_1:+44340161 | Msa0732230:CDS |
| CCTGCAGTATGGTTGCATCA+TGG | 0.528181 | 5_1:+44339994 | Msa0732230:intron |
| TGCCAAAACAACCTGTCCCC+AGG | 0.543982 | 5_1:-44340172 | None:intergenic |
| TTTAGTGAAAGCAACATCCT+GGG | 0.557944 | 5_1:+44340155 | Msa0732230:CDS |
| GCTGAAATGGTTGGTTACAA+AGG | 0.559142 | 5_1:+44340251 | Msa0732230:CDS |
| GCTGAAATGGTTGGTGACAA+AGG | 0.559752 | 5_1:+44339096 | None:intergenic |
| CTGAAATGGTTGGTGACAAA+GGG | 0.579062 | 5_1:+44339097 | None:intergenic |
| TACAAAGGAGAATTGGATGG+TGG | 0.598161 | 5_1:+44340200 | Msa0732230:CDS |
| GTCCTTGAATACCTGCCTCA+AGG | 0.601249 | 5_1:+44339222 | Msa0732230:CDS |
| TTGATTTAGTGGGAGGCTGG+AGG | 0.607023 | 5_1:+44340896 | Msa0732230:intron |
| TGAGTTCAAGTCTGAAATGG+AGG | 0.619786 | 5_1:+44339125 | Msa0732230:CDS |
| GTATACAAAGGAGAATTGGA+TGG | 0.653189 | 5_1:+44340197 | Msa0732230:CDS |
| TGGAGGACAACAGAGGTGCA+TGG | 0.654778 | 5_1:+44340913 | Msa0732230:CDS |
| AGGATGGCGGCTGAAATGGT+TGG | 0.666328 | 5_1:+44340242 | Msa0732230:CDS |
| TTAGTAGCAATTCGTCTGTG+TGG | 0.666585 | 5_1:-44340089 | None:intergenic |
| TTAGTGAAAGCAACATCCTG+GGG | 0.703189 | 5_1:+44340156 | Msa0732230:CDS |
| GGGAGGCTGGAGGACAACAG+AGG | 0.710974 | 5_1:+44340906 | Msa0732230:CDS |
| AGGATGGCAGCTGAAATGGT+TGG | 0.735675 | 5_1:+44339087 | None:intergenic |
| TATACACTAAGAGTGCCTTG+AGG | 0.753578 | 5_1:-44339237 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTGAAAATAATATTTAAT+AGG | + | chr5_1:44339493-44339512 | Msa0732230:intron | 10.0% |
| !! | AAATAATGTCTATATTAAAT+AGG | - | chr5_1:44339677-44339696 | None:intergenic | 10.0% |
| !! | TGTTGAAAATAATATTTAAT+AGG | + | chr5_1:44339493-44339512 | Msa0732230:intron | 10.0% |
| !!! | TAATTTTTTACTTTTACAAA+AGG | + | chr5_1:44340705-44340724 | Msa0732230:intron | 10.0% |
| !!! | AAATATTTATTTTGATTTAG+TGG | + | chr5_1:44340885-44340904 | Msa0732230:intron | 10.0% |
| !!! | AATATTTATTTTGATTTAGT+GGG | + | chr5_1:44340886-44340905 | Msa0732230:intron | 10.0% |
| !! | TGTTGAAAATAATATTTAAT+AGG | + | chr5_1:44339493-44339512 | Msa0732230:intron | 10.0% |
| !! | AAATAATGTCTATATTAAAT+AGG | - | chr5_1:44339677-44339696 | None:intergenic | 10.0% |
| !! | TGTTGAAAATAATATTTAAT+AGG | + | chr5_1:44339493-44339512 | Msa0732230:intron | 10.0% |
| !!! | TAATTTTTTACTTTTACAAA+AGG | + | chr5_1:44340705-44340724 | Msa0732230:intron | 10.0% |
| !!! | AAATATTTATTTTGATTTAG+TGG | + | chr5_1:44340885-44340904 | Msa0732230:intron | 10.0% |
| !!! | AATATTTATTTTGATTTAGT+GGG | + | chr5_1:44340886-44340905 | Msa0732230:intron | 10.0% |
| !! | CATTGAATAATTAATGTATT+CGG | + | chr5_1:44339364-44339383 | Msa0732230:intron | 15.0% |
| !!! | TTTTACAAAAGAACAAATTA+GGG | - | chr5_1:44339816-44339835 | None:intergenic | 15.0% |
| !!! | TTTTTACAAAAGAACAAATT+AGG | - | chr5_1:44339817-44339836 | None:intergenic | 15.0% |
| !! | TTGTTAATATAAATCAAACT+TGG | - | chr5_1:44340843-44340862 | None:intergenic | 15.0% |
| !! | CATTGAATAATTAATGTATT+CGG | + | chr5_1:44339364-44339383 | Msa0732230:intron | 15.0% |
| !!! | TTTTACAAAAGAACAAATTA+GGG | - | chr5_1:44339816-44339835 | None:intergenic | 15.0% |
| !!! | TTTTTACAAAAGAACAAATT+AGG | - | chr5_1:44339817-44339836 | None:intergenic | 15.0% |
| !! | TTGTTAATATAAATCAAACT+TGG | - | chr5_1:44340843-44340862 | None:intergenic | 15.0% |
| !! | TTGTTAAAGATTATACAACT+TGG | + | chr5_1:44339543-44339562 | Msa0732230:intron | 20.0% |
| !!! | ATTTTATGATCTCTAAGAAT+TGG | - | chr5_1:44339701-44339720 | None:intergenic | 20.0% |
| !! | TTTACAAAAGAACAAATTAG+GGG | - | chr5_1:44339815-44339834 | None:intergenic | 20.0% |
| !! | AAATACAGTCTCAATTAAAT+AGG | - | chr5_1:44340636-44340655 | None:intergenic | 20.0% |
| !! | TTAATATAAATCAAACTTGG+AGG | - | chr5_1:44340840-44340859 | None:intergenic | 20.0% |
| !! | TTGTTAAAGATTATACAACT+TGG | + | chr5_1:44339543-44339562 | Msa0732230:intron | 20.0% |
| !!! | ATTTTATGATCTCTAAGAAT+TGG | - | chr5_1:44339701-44339720 | None:intergenic | 20.0% |
| !! | TTTACAAAAGAACAAATTAG+GGG | - | chr5_1:44339815-44339834 | None:intergenic | 20.0% |
| !! | AAATACAGTCTCAATTAAAT+AGG | - | chr5_1:44340636-44340655 | None:intergenic | 20.0% |
| !! | TTAATATAAATCAAACTTGG+AGG | - | chr5_1:44340840-44340859 | None:intergenic | 20.0% |
| ! | ATATATATATATACTCCCTC+CGG | + | chr5_1:44339307-44339326 | Msa0732230:intron | 25.0% |
| !! | TTTTTGCTTATATATGTGAC+CGG | - | chr5_1:44339329-44339348 | None:intergenic | 25.0% |
| ! | ATTCAATGTACCTAAAAAGT+TGG | + | chr5_1:44339415-44339434 | Msa0732230:intron | 25.0% |
| !! | TATGCAAAAACCAACTTTTT+AGG | - | chr5_1:44339428-44339447 | None:intergenic | 25.0% |
| !! | TTTTTGCATATAAATGTGAC+CGG | + | chr5_1:44339438-44339457 | Msa0732230:intron | 25.0% |
| ! | AAAGTTGTGTAATCATTACA+TGG | - | chr5_1:44339591-44339610 | None:intergenic | 25.0% |
| ! | GAAGAATGATTGTTGTAAAA+AGG | + | chr5_1:44340222-44340241 | Msa0732230:CDS | 25.0% |
| ! | AATGATTGTTGTAAAAAGGA+TGG | + | chr5_1:44340226-44340245 | Msa0732230:CDS | 25.0% |
| ! | AAAGTTGTGTAATCATTACT+TGG | - | chr5_1:44340571-44340590 | None:intergenic | 25.0% |
| !! | TCATGAAAACTTACTTGTTT+TGG | + | chr5_1:44340592-44340611 | Msa0732230:intron | 25.0% |
| ! | TCAATTAAATAGGAGGATAT+TGG | - | chr5_1:44340626-44340645 | None:intergenic | 25.0% |
| !!! | ATGATCAGTTTTTTATTGCA+TGG | - | chr5_1:44340784-44340803 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGATTTAGTGGG+AGG | + | chr5_1:44340889-44340908 | Msa0732230:intron | 25.0% |
| ! | ATATATATATATACTCCCTC+CGG | + | chr5_1:44339307-44339326 | Msa0732230:intron | 25.0% |
| !! | TTTTTGCTTATATATGTGAC+CGG | - | chr5_1:44339329-44339348 | None:intergenic | 25.0% |
| ! | ATTCAATGTACCTAAAAAGT+TGG | + | chr5_1:44339415-44339434 | Msa0732230:intron | 25.0% |
| !! | TATGCAAAAACCAACTTTTT+AGG | - | chr5_1:44339428-44339447 | None:intergenic | 25.0% |
| !! | TTTTTGCATATAAATGTGAC+CGG | + | chr5_1:44339438-44339457 | Msa0732230:intron | 25.0% |
| ! | AAAGTTGTGTAATCATTACA+TGG | - | chr5_1:44339591-44339610 | None:intergenic | 25.0% |
| ! | GAAGAATGATTGTTGTAAAA+AGG | + | chr5_1:44340222-44340241 | Msa0732230:CDS | 25.0% |
| ! | AATGATTGTTGTAAAAAGGA+TGG | + | chr5_1:44340226-44340245 | Msa0732230:CDS | 25.0% |
| ! | AAAGTTGTGTAATCATTACT+TGG | - | chr5_1:44340571-44340590 | None:intergenic | 25.0% |
| !! | TCATGAAAACTTACTTGTTT+TGG | + | chr5_1:44340592-44340611 | Msa0732230:intron | 25.0% |
| ! | TCAATTAAATAGGAGGATAT+TGG | - | chr5_1:44340626-44340645 | None:intergenic | 25.0% |
| !!! | ATGATCAGTTTTTTATTGCA+TGG | - | chr5_1:44340784-44340803 | None:intergenic | 25.0% |
| !!! | ATTTATTTTGATTTAGTGGG+AGG | + | chr5_1:44340889-44340908 | Msa0732230:intron | 25.0% |
| ATGTATTCGGTCATGTTTAT+AGG | + | chr5_1:44339377-44339396 | Msa0732230:intron | 30.0% | |
| !! | TCATGAAAACTTGCTTGTTT+TGG | + | chr5_1:44339612-44339631 | Msa0732230:intron | 30.0% |
| !!! | ATATTAGTTTTTCGTCTGTG+TGG | + | chr5_1:44340017-44340036 | Msa0732230:CDS | 30.0% |
| ! | AATGAGTTCAAGTCTGAAAT+GGG | + | chr5_1:44339123-44339142 | Msa0732230:CDS | 30.0% |
| TACAGTCTCAATTAAATAGG+AGG | - | chr5_1:44340633-44340652 | None:intergenic | 30.0% | |
| ATGTATTCGGTCATGTTTAT+AGG | + | chr5_1:44339377-44339396 | Msa0732230:intron | 30.0% | |
| !! | TCATGAAAACTTGCTTGTTT+TGG | + | chr5_1:44339612-44339631 | Msa0732230:intron | 30.0% |
| !!! | ATATTAGTTTTTCGTCTGTG+TGG | + | chr5_1:44340017-44340036 | Msa0732230:CDS | 30.0% |
| ! | AATGAGTTCAAGTCTGAAAT+GGG | + | chr5_1:44339123-44339142 | Msa0732230:CDS | 30.0% |
| TACAGTCTCAATTAAATAGG+AGG | - | chr5_1:44340633-44340652 | None:intergenic | 30.0% | |
| GAATGAGTTCAAGTCTGAAA+TGG | + | chr5_1:44339122-44339141 | Msa0732230:CDS | 35.0% | |
| TGAAATGGAGGTTCTTACTA+AGG | + | chr5_1:44339137-44339156 | Msa0732230:CDS | 35.0% | |
| TAAGGTTAGACACAAGCATT+TGG | + | chr5_1:44339155-44339174 | Msa0732230:CDS | 35.0% | |
| ATCTTTAACAAATGTCCCGA+GGG | - | chr5_1:44339534-44339553 | None:intergenic | 35.0% | |
| AATCTTTAACAAATGTCCCG+AGG | - | chr5_1:44339535-44339554 | None:intergenic | 35.0% | |
| ! | TCTGCATTGCTTTATTCACA+TGG | + | chr5_1:44339871-44339890 | Msa0732230:intron | 35.0% |
| GCTTGTCTCAAAACTTGAAT+TGG | - | chr5_1:44340125-44340144 | None:intergenic | 35.0% | |
| GCTTTCACTAAAGTTGTTTG+TGG | - | chr5_1:44340147-44340166 | None:intergenic | 35.0% | |
| TTTAGTGAAAGCAACATCCT+GGG | + | chr5_1:44340155-44340174 | Msa0732230:CDS | 35.0% | |
| !!! | TGTTTTGGCATGGTATACAA+AGG | + | chr5_1:44340185-44340204 | Msa0732230:CDS | 35.0% |
| CATGGTATACAAAGGAGAAT+TGG | + | chr5_1:44340193-44340212 | Msa0732230:CDS | 35.0% | |
| GTATACAAAGGAGAATTGGA+TGG | + | chr5_1:44340197-44340216 | Msa0732230:CDS | 35.0% | |
| GATTGTTGTAAAAAGGATGG+CGG | + | chr5_1:44340229-44340248 | Msa0732230:CDS | 35.0% | |
| ! | CTGAAATGGTTGGTTACAAA+GGG | + | chr5_1:44340252-44340271 | Msa0732230:CDS | 35.0% |
| GAATGAGTTCAAGTCTGAAA+TGG | + | chr5_1:44339122-44339141 | Msa0732230:CDS | 35.0% | |
| TAAGGTTAGACACAAGCATT+TGG | + | chr5_1:44339155-44339174 | Msa0732230:CDS | 35.0% | |
| !!! | TGTCGCGAATCATTTTTTCA+CGG | + | chr5_1:44340739-44340758 | Msa0732230:intron | 35.0% |
| GGTGAACAAGCTATAGTTAA+AGG | - | chr5_1:44340811-44340830 | None:intergenic | 35.0% | |
| GAATGAGTTCAAGTCTGAAA+TGG | + | chr5_1:44339122-44339141 | Msa0732230:CDS | 35.0% | |
| TGAAATGGAGGTTCTTACTA+AGG | + | chr5_1:44339137-44339156 | Msa0732230:CDS | 35.0% | |
| TAAGGTTAGACACAAGCATT+TGG | + | chr5_1:44339155-44339174 | Msa0732230:CDS | 35.0% | |
| ATCTTTAACAAATGTCCCGA+GGG | - | chr5_1:44339534-44339553 | None:intergenic | 35.0% | |
| AATCTTTAACAAATGTCCCG+AGG | - | chr5_1:44339535-44339554 | None:intergenic | 35.0% | |
| ! | TCTGCATTGCTTTATTCACA+TGG | + | chr5_1:44339871-44339890 | Msa0732230:intron | 35.0% |
| GCTTGTCTCAAAACTTGAAT+TGG | - | chr5_1:44340125-44340144 | None:intergenic | 35.0% | |
| GCTTTCACTAAAGTTGTTTG+TGG | - | chr5_1:44340147-44340166 | None:intergenic | 35.0% | |
| TTTAGTGAAAGCAACATCCT+GGG | + | chr5_1:44340155-44340174 | Msa0732230:CDS | 35.0% | |
| !!! | TGTTTTGGCATGGTATACAA+AGG | + | chr5_1:44340185-44340204 | Msa0732230:CDS | 35.0% |
| CATGGTATACAAAGGAGAAT+TGG | + | chr5_1:44340193-44340212 | Msa0732230:CDS | 35.0% | |
| GTATACAAAGGAGAATTGGA+TGG | + | chr5_1:44340197-44340216 | Msa0732230:CDS | 35.0% | |
| GATTGTTGTAAAAAGGATGG+CGG | + | chr5_1:44340229-44340248 | Msa0732230:CDS | 35.0% | |
| ! | CTGAAATGGTTGGTTACAAA+GGG | + | chr5_1:44340252-44340271 | Msa0732230:CDS | 35.0% |
| GAATGAGTTCAAGTCTGAAA+TGG | + | chr5_1:44339122-44339141 | Msa0732230:CDS | 35.0% | |
| TAAGGTTAGACACAAGCATT+TGG | + | chr5_1:44339155-44339174 | Msa0732230:CDS | 35.0% | |
| !!! | TGTCGCGAATCATTTTTTCA+CGG | + | chr5_1:44340739-44340758 | Msa0732230:intron | 35.0% |
| GGTGAACAAGCTATAGTTAA+AGG | - | chr5_1:44340811-44340830 | None:intergenic | 35.0% | |
| ! | TGAGTTCAAGTCTGAAATGG+AGG | + | chr5_1:44339125-44339144 | Msa0732230:CDS | 40.0% |
| !! | TATACACTAAGAGTGCCTTG+AGG | - | chr5_1:44339240-44339259 | None:intergenic | 40.0% |
| TGCTTATATATGTGACCGGA+GGG | - | chr5_1:44339325-44339344 | None:intergenic | 40.0% | |
| TTGCTTATATATGTGACCGG+AGG | - | chr5_1:44339326-44339345 | None:intergenic | 40.0% | |
| TTGCATATAAATGTGACCGG+AGG | + | chr5_1:44339441-44339460 | Msa0732230:intron | 40.0% | |
| TGCATATAAATGTGACCGGA+GGG | + | chr5_1:44339442-44339461 | Msa0732230:intron | 40.0% | |
| GATGCTTAACCAATACCCTT+GGG | + | chr5_1:44339634-44339653 | Msa0732230:intron | 40.0% | |
| ATGCTTAACCAATACCCTTG+GGG | + | chr5_1:44339635-44339654 | Msa0732230:intron | 40.0% | |
| TTTCAGTGTTTCCTGCAGTA+TGG | + | chr5_1:44339983-44340002 | Msa0732230:intron | 40.0% | |
| ! | CATAGTGGTCATTCTAGAGA+TGG | + | chr5_1:44340065-44340084 | Msa0732230:intron | 40.0% |
| TTAGTAGCAATTCGTCTGTG+TGG | - | chr5_1:44340092-44340111 | None:intergenic | 40.0% | |
| CTTTAGTGAAAGCAACATCC+TGG | + | chr5_1:44340154-44340173 | Msa0732230:CDS | 40.0% | |
| TTAGTGAAAGCAACATCCTG+GGG | + | chr5_1:44340156-44340175 | Msa0732230:CDS | 40.0% | |
| TACAAAGGAGAATTGGATGG+TGG | + | chr5_1:44340200-44340219 | Msa0732230:CDS | 40.0% | |
| ! | GCTGAAATGGTTGGTTACAA+AGG | + | chr5_1:44340251-44340270 | Msa0732230:CDS | 40.0% |
| TGAAATGGGCGTTCTTACTA+AGG | + | chr5_1:44340292-44340311 | Msa0732230:CDS | 40.0% | |
| TCACGGAAAAATCACGAATG+AGG | + | chr5_1:44340756-44340775 | Msa0732230:intron | 40.0% | |
| !!! | ATTTTGATTTAGTGGGAGGC+TGG | + | chr5_1:44340893-44340912 | Msa0732230:intron | 40.0% |
| ! | TGAGTTCAAGTCTGAAATGG+AGG | + | chr5_1:44339125-44339144 | Msa0732230:CDS | 40.0% |
| !! | TATACACTAAGAGTGCCTTG+AGG | - | chr5_1:44339240-44339259 | None:intergenic | 40.0% |
| TGCTTATATATGTGACCGGA+GGG | - | chr5_1:44339325-44339344 | None:intergenic | 40.0% | |
| TTGCTTATATATGTGACCGG+AGG | - | chr5_1:44339326-44339345 | None:intergenic | 40.0% | |
| TTGCATATAAATGTGACCGG+AGG | + | chr5_1:44339441-44339460 | Msa0732230:intron | 40.0% | |
| TGCATATAAATGTGACCGGA+GGG | + | chr5_1:44339442-44339461 | Msa0732230:intron | 40.0% | |
| GATGCTTAACCAATACCCTT+GGG | + | chr5_1:44339634-44339653 | Msa0732230:intron | 40.0% | |
| ATGCTTAACCAATACCCTTG+GGG | + | chr5_1:44339635-44339654 | Msa0732230:intron | 40.0% | |
| TTTCAGTGTTTCCTGCAGTA+TGG | + | chr5_1:44339983-44340002 | Msa0732230:intron | 40.0% | |
| ! | CATAGTGGTCATTCTAGAGA+TGG | + | chr5_1:44340065-44340084 | Msa0732230:intron | 40.0% |
| TTAGTAGCAATTCGTCTGTG+TGG | - | chr5_1:44340092-44340111 | None:intergenic | 40.0% | |
| CTTTAGTGAAAGCAACATCC+TGG | + | chr5_1:44340154-44340173 | Msa0732230:CDS | 40.0% | |
| TTAGTGAAAGCAACATCCTG+GGG | + | chr5_1:44340156-44340175 | Msa0732230:CDS | 40.0% | |
| TACAAAGGAGAATTGGATGG+TGG | + | chr5_1:44340200-44340219 | Msa0732230:CDS | 40.0% | |
| ! | GCTGAAATGGTTGGTTACAA+AGG | + | chr5_1:44340251-44340270 | Msa0732230:CDS | 40.0% |
| TGAAATGGGCGTTCTTACTA+AGG | + | chr5_1:44340292-44340311 | Msa0732230:CDS | 40.0% | |
| TCACGGAAAAATCACGAATG+AGG | + | chr5_1:44340756-44340775 | Msa0732230:intron | 40.0% | |
| !!! | ATTTTGATTTAGTGGGAGGC+TGG | + | chr5_1:44340893-44340912 | Msa0732230:intron | 40.0% |
| AAGCATTTGGTTGCACTTCG+TGG | + | chr5_1:44339168-44339187 | Msa0732230:CDS | 45.0% | |
| TGCACTTCGTGGTTATTGCT+TGG | + | chr5_1:44339179-44339198 | Msa0732230:CDS | 45.0% | |
| GGATGCTTAACCAATACCCT+TGG | + | chr5_1:44339633-44339652 | Msa0732230:intron | 45.0% | |
| AATGCTAATCAGTGCCCCAA+GGG | - | chr5_1:44339652-44339671 | None:intergenic | 45.0% | |
| !! | AAAAGCACCATGTGAGAGGT+GGG | - | chr5_1:44339942-44339961 | None:intergenic | 45.0% |
| !! | AAAAAGCACCATGTGAGAGG+TGG | - | chr5_1:44339943-44339962 | None:intergenic | 45.0% |
| !! | TGCAAAAAGCACCATGTGAG+AGG | - | chr5_1:44339946-44339965 | None:intergenic | 45.0% |
| !! | TCTCACATGGTGCTTTTTGC+AGG | + | chr5_1:44339945-44339964 | Msa0732230:intron | 45.0% |
| ACTATGTGCAACTGTTGCAC+CGG | - | chr5_1:44340051-44340070 | None:intergenic | 45.0% | |
| ! | AAAAAGGATGGCGGCTGAAA+TGG | + | chr5_1:44340238-44340257 | Msa0732230:CDS | 45.0% |
| AAGCATTTGGTTGCACTTCG+TGG | + | chr5_1:44339168-44339187 | Msa0732230:CDS | 45.0% | |
| GCTATTGCTTGCACGACAAT+GGG | + | chr5_1:44340345-44340364 | Msa0732230:intron | 45.0% | |
| GTCCTTGAATACCTACCTCA+AGG | + | chr5_1:44340377-44340396 | Msa0732230:intron | 45.0% | |
| TGCCTTGAGGTAGGTATTCA+AGG | - | chr5_1:44340382-44340401 | None:intergenic | 45.0% | |
| !! | CATATGCTAAGAGTGCCTTG+AGG | - | chr5_1:44340395-44340414 | None:intergenic | 45.0% |
| ACTCTTCACCAATGTCCTGT+GGG | - | chr5_1:44340501-44340520 | None:intergenic | 45.0% | |
| AACTCTTCACCAATGTCCTG+TGG | - | chr5_1:44340502-44340521 | None:intergenic | 45.0% | |
| AATCAAACTTGGAGGAGCAG+AGG | - | chr5_1:44340832-44340851 | None:intergenic | 45.0% | |
| AAGCATTTGGTTGCACTTCG+TGG | + | chr5_1:44339168-44339187 | Msa0732230:CDS | 45.0% | |
| TGCACTTCGTGGTTATTGCT+TGG | + | chr5_1:44339179-44339198 | Msa0732230:CDS | 45.0% | |
| GGATGCTTAACCAATACCCT+TGG | + | chr5_1:44339633-44339652 | Msa0732230:intron | 45.0% | |
| AATGCTAATCAGTGCCCCAA+GGG | - | chr5_1:44339652-44339671 | None:intergenic | 45.0% | |
| !! | AAAAGCACCATGTGAGAGGT+GGG | - | chr5_1:44339942-44339961 | None:intergenic | 45.0% |
| !! | AAAAAGCACCATGTGAGAGG+TGG | - | chr5_1:44339943-44339962 | None:intergenic | 45.0% |
| !! | TGCAAAAAGCACCATGTGAG+AGG | - | chr5_1:44339946-44339965 | None:intergenic | 45.0% |
| !! | TCTCACATGGTGCTTTTTGC+AGG | + | chr5_1:44339945-44339964 | Msa0732230:intron | 45.0% |
| ACTATGTGCAACTGTTGCAC+CGG | - | chr5_1:44340051-44340070 | None:intergenic | 45.0% | |
| ! | AAAAAGGATGGCGGCTGAAA+TGG | + | chr5_1:44340238-44340257 | Msa0732230:CDS | 45.0% |
| AAGCATTTGGTTGCACTTCG+TGG | + | chr5_1:44339168-44339187 | Msa0732230:CDS | 45.0% | |
| GCTATTGCTTGCACGACAAT+GGG | + | chr5_1:44340345-44340364 | Msa0732230:intron | 45.0% | |
| GTCCTTGAATACCTACCTCA+AGG | + | chr5_1:44340377-44340396 | Msa0732230:intron | 45.0% | |
| TGCCTTGAGGTAGGTATTCA+AGG | - | chr5_1:44340382-44340401 | None:intergenic | 45.0% | |
| !! | CATATGCTAAGAGTGCCTTG+AGG | - | chr5_1:44340395-44340414 | None:intergenic | 45.0% |
| ACTCTTCACCAATGTCCTGT+GGG | - | chr5_1:44340501-44340520 | None:intergenic | 45.0% | |
| AACTCTTCACCAATGTCCTG+TGG | - | chr5_1:44340502-44340521 | None:intergenic | 45.0% | |
| AATCAAACTTGGAGGAGCAG+AGG | - | chr5_1:44340832-44340851 | None:intergenic | 45.0% | |
| GTCCTTGAATACCTGCCTCA+AGG | + | chr5_1:44339222-44339241 | Msa0732230:CDS | 50.0% | |
| TGCCTTGAGGCAGGTATTCA+AGG | - | chr5_1:44339227-44339246 | None:intergenic | 50.0% | |
| GTCTTGCTAATCAGTGCCCT+CGG | + | chr5_1:44339515-44339534 | Msa0732230:intron | 50.0% | |
| TCTTGCTAATCAGTGCCCTC+GGG | + | chr5_1:44339516-44339535 | Msa0732230:intron | 50.0% | |
| ! | AATCAGTGCCCCAAGGGTAT+TGG | - | chr5_1:44339646-44339665 | None:intergenic | 50.0% |
| GAATGCTAATCAGTGCCCCA+AGG | - | chr5_1:44339653-44339672 | None:intergenic | 50.0% | |
| ! | AAAGCACCATGTGAGAGGTG+GGG | - | chr5_1:44339941-44339960 | None:intergenic | 50.0% |
| CCATGATGCAACCATACTGC+AGG | - | chr5_1:44339997-44340016 | None:intergenic | 50.0% | |
| CCTGCAGTATGGTTGCATCA+TGG | + | chr5_1:44339994-44340013 | Msa0732230:intron | 50.0% | |
| GGTGCAACAGTTGCACATAG+TGG | + | chr5_1:44340050-44340069 | Msa0732230:intron | 50.0% | |
| ! | ATCCTGGGGACAGGTTGTTT+TGG | + | chr5_1:44340170-44340189 | Msa0732230:CDS | 50.0% |
| GGCTATTGCTTGCACGACAA+TGG | + | chr5_1:44340344-44340363 | Msa0732230:intron | 50.0% | |
| !! | TGCTAAGAGTGCCTTGAGGT+AGG | - | chr5_1:44340391-44340410 | None:intergenic | 50.0% |
| TTGATTTAGTGGGAGGCTGG+AGG | + | chr5_1:44340896-44340915 | Msa0732230:intron | 50.0% | |
| GTCCTTGAATACCTGCCTCA+AGG | + | chr5_1:44339222-44339241 | Msa0732230:CDS | 50.0% | |
| TGCCTTGAGGCAGGTATTCA+AGG | - | chr5_1:44339227-44339246 | None:intergenic | 50.0% | |
| GTCTTGCTAATCAGTGCCCT+CGG | + | chr5_1:44339515-44339534 | Msa0732230:intron | 50.0% | |
| TCTTGCTAATCAGTGCCCTC+GGG | + | chr5_1:44339516-44339535 | Msa0732230:intron | 50.0% | |
| ! | AATCAGTGCCCCAAGGGTAT+TGG | - | chr5_1:44339646-44339665 | None:intergenic | 50.0% |
| GAATGCTAATCAGTGCCCCA+AGG | - | chr5_1:44339653-44339672 | None:intergenic | 50.0% | |
| ! | AAAGCACCATGTGAGAGGTG+GGG | - | chr5_1:44339941-44339960 | None:intergenic | 50.0% |
| CCATGATGCAACCATACTGC+AGG | - | chr5_1:44339997-44340016 | None:intergenic | 50.0% | |
| CCTGCAGTATGGTTGCATCA+TGG | + | chr5_1:44339994-44340013 | Msa0732230:intron | 50.0% | |
| GGTGCAACAGTTGCACATAG+TGG | + | chr5_1:44340050-44340069 | Msa0732230:intron | 50.0% | |
| ! | ATCCTGGGGACAGGTTGTTT+TGG | + | chr5_1:44340170-44340189 | Msa0732230:CDS | 50.0% |
| GGCTATTGCTTGCACGACAA+TGG | + | chr5_1:44340344-44340363 | Msa0732230:intron | 50.0% | |
| !! | TGCTAAGAGTGCCTTGAGGT+AGG | - | chr5_1:44340391-44340410 | None:intergenic | 50.0% |
| TTGATTTAGTGGGAGGCTGG+AGG | + | chr5_1:44340896-44340915 | Msa0732230:intron | 50.0% | |
| !! | CACTAAGAGTGCCTTGAGGC+AGG | - | chr5_1:44339236-44339255 | None:intergenic | 55.0% |
| TCGCACACACATACTCCCTC+CGG | - | chr5_1:44339460-44339479 | None:intergenic | 55.0% | |
| CGTCTGTGTGGTCACACTTC+CGG | + | chr5_1:44340029-44340048 | Msa0732230:CDS | 55.0% | |
| GAAAGCAACATCCTGGGGAC+AGG | + | chr5_1:44340161-44340180 | Msa0732230:CDS | 55.0% | |
| TGCCAAAACAACCTGTCCCC+AGG | - | chr5_1:44340175-44340194 | None:intergenic | 55.0% | |
| !!! | GGGGACAGGTTGTTTTGGCA+TGG | + | chr5_1:44340175-44340194 | Msa0732230:CDS | 55.0% |
| ! | AGGATGGCGGCTGAAATGGT+TGG | + | chr5_1:44340242-44340261 | Msa0732230:CDS | 55.0% |
| TCTTGCTAACCAGTGCCCAC+AGG | + | chr5_1:44340483-44340502 | Msa0732230:intron | 55.0% | |
| AACCAGTGCCCACAGGACAT+TGG | + | chr5_1:44340490-44340509 | Msa0732230:intron | 55.0% | |
| ! | TGGAGGACAACAGAGGTGCA+TGG | + | chr5_1:44340913-44340932 | Msa0732230:CDS | 55.0% |
| !! | CACTAAGAGTGCCTTGAGGC+AGG | - | chr5_1:44339236-44339255 | None:intergenic | 55.0% |
| TCGCACACACATACTCCCTC+CGG | - | chr5_1:44339460-44339479 | None:intergenic | 55.0% | |
| CGTCTGTGTGGTCACACTTC+CGG | + | chr5_1:44340029-44340048 | Msa0732230:CDS | 55.0% | |
| GAAAGCAACATCCTGGGGAC+AGG | + | chr5_1:44340161-44340180 | Msa0732230:CDS | 55.0% | |
| TGCCAAAACAACCTGTCCCC+AGG | - | chr5_1:44340175-44340194 | None:intergenic | 55.0% | |
| !!! | GGGGACAGGTTGTTTTGGCA+TGG | + | chr5_1:44340175-44340194 | Msa0732230:CDS | 55.0% |
| ! | AGGATGGCGGCTGAAATGGT+TGG | + | chr5_1:44340242-44340261 | Msa0732230:CDS | 55.0% |
| TCTTGCTAACCAGTGCCCAC+AGG | + | chr5_1:44340483-44340502 | Msa0732230:intron | 55.0% | |
| AACCAGTGCCCACAGGACAT+TGG | + | chr5_1:44340490-44340509 | Msa0732230:intron | 55.0% | |
| ! | TGGAGGACAACAGAGGTGCA+TGG | + | chr5_1:44340913-44340932 | Msa0732230:CDS | 55.0% |
| ACCATGTGAGAGGTGGGGAG+GGG | - | chr5_1:44339936-44339955 | None:intergenic | 60.0% | |
| CACCATGTGAGAGGTGGGGA+GGG | - | chr5_1:44339937-44339956 | None:intergenic | 60.0% | |
| CACCAATGTCCTGTGGGCAC+TGG | - | chr5_1:44340495-44340514 | None:intergenic | 60.0% | |
| ACCATGTGAGAGGTGGGGAG+GGG | - | chr5_1:44339936-44339955 | None:intergenic | 60.0% | |
| CACCATGTGAGAGGTGGGGA+GGG | - | chr5_1:44339937-44339956 | None:intergenic | 60.0% | |
| CACCAATGTCCTGTGGGCAC+TGG | - | chr5_1:44340495-44340514 | None:intergenic | 60.0% | |
| ! | TGGGGAGGGGGTATAGCGGA+GGG | - | chr5_1:44339923-44339942 | None:intergenic | 65.0% |
| ! | GAGGTGGGGAGGGGGTATAG+CGG | - | chr5_1:44339927-44339946 | None:intergenic | 65.0% |
| CCATGTGAGAGGTGGGGAGG+GGG | - | chr5_1:44339935-44339954 | None:intergenic | 65.0% | |
| GCACCATGTGAGAGGTGGGG+AGG | - | chr5_1:44339938-44339957 | None:intergenic | 65.0% | |
| GGGAGGCTGGAGGACAACAG+AGG | + | chr5_1:44340906-44340925 | Msa0732230:CDS | 65.0% | |
| ! | TGGGGAGGGGGTATAGCGGA+GGG | - | chr5_1:44339923-44339942 | None:intergenic | 65.0% |
| ! | GAGGTGGGGAGGGGGTATAG+CGG | - | chr5_1:44339927-44339946 | None:intergenic | 65.0% |
| CCATGTGAGAGGTGGGGAGG+GGG | - | chr5_1:44339935-44339954 | None:intergenic | 65.0% | |
| GCACCATGTGAGAGGTGGGG+AGG | - | chr5_1:44339938-44339957 | None:intergenic | 65.0% | |
| GGGAGGCTGGAGGACAACAG+AGG | + | chr5_1:44340906-44340925 | Msa0732230:CDS | 65.0% | |
| ! | GTGGGGAGGGGGTATAGCGG+AGG | - | chr5_1:44339924-44339943 | None:intergenic | 70.0% |
| CCCCCTCCCCACCTCTCACA+TGG | + | chr5_1:44339932-44339951 | Msa0732230:intron | 70.0% | |
| ! | GTGGGGAGGGGGTATAGCGG+AGG | - | chr5_1:44339924-44339943 | None:intergenic | 70.0% |
| CCCCCTCCCCACCTCTCACA+TGG | + | chr5_1:44339932-44339951 | Msa0732230:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 44339102 | 44340943 | 44339102 | ID=Msa0732230;Name=Msa0732230 |
| chr5_1 | mRNA | 44339102 | 44340943 | 44339102 | ID=Msa0732230-mRNA-1;Parent=Msa0732230;Name=Msa0732230-mRNA-1;_AED=0.72;_eAED=0.72;_QI=0|0|0|0.25|0.33|0.25|4|0|157 |
| chr5_1 | exon | 44339102 | 44339254 | 44339102 | ID=Msa0732230-mRNA-1:exon:12595;Parent=Msa0732230-mRNA-1 |
| chr5_1 | exon | 44340001 | 44340050 | 44340001 | ID=Msa0732230-mRNA-1:exon:12596;Parent=Msa0732230-mRNA-1 |
| chr5_1 | exon | 44340082 | 44340313 | 44340082 | ID=Msa0732230-mRNA-1:exon:12597;Parent=Msa0732230-mRNA-1 |
| chr5_1 | exon | 44340905 | 44340943 | 44340905 | ID=Msa0732230-mRNA-1:exon:12598;Parent=Msa0732230-mRNA-1 |
| chr5_1 | CDS | 44339102 | 44339254 | 44339102 | ID=Msa0732230-mRNA-1:cds;Parent=Msa0732230-mRNA-1 |
| chr5_1 | CDS | 44340001 | 44340050 | 44340001 | ID=Msa0732230-mRNA-1:cds;Parent=Msa0732230-mRNA-1 |
| chr5_1 | CDS | 44340082 | 44340313 | 44340082 | ID=Msa0732230-mRNA-1:cds;Parent=Msa0732230-mRNA-1 |
| chr5_1 | CDS | 44340905 | 44340943 | 44340905 | ID=Msa0732230-mRNA-1:cds;Parent=Msa0732230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
