Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732690 | XP_003615317.1 | 97.213 | 287 | 7 | 1 | 1 | 287 | 1 | 286 | 0.0 | 581 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732690 | sp|Q9LRH6|GAT25_ARATH | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.82e-73 | 229 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732690 | G7JYF5 | 97.213 | 287 | 7 | 1 | 1 | 287 | 1 | 286 | 0.0 | 581 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0732690 | TF | C2C2-GATA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732690 | MtrunA17_Chr5g0427661 | 97.213 | 287 | 7 | 1 | 1 | 287 | 1 | 286 | 0.0 | 581 |
| Msa0732690 | MtrunA17_Chr3g0132761 | 60.465 | 258 | 71 | 8 | 46 | 275 | 42 | 296 | 3.75e-93 | 278 |
| Msa0732690 | MtrunA17_Chr3g0132751 | 54.595 | 185 | 76 | 5 | 74 | 252 | 69 | 251 | 2.28e-57 | 187 |
| Msa0732690 | MtrunA17_Chr4g0049741 | 51.208 | 207 | 80 | 8 | 53 | 245 | 20 | 219 | 3.26e-56 | 184 |
| Msa0732690 | MtrunA17_Chr4g0002231 | 56.701 | 97 | 28 | 4 | 152 | 237 | 42 | 135 | 1.85e-26 | 101 |
| Msa0732690 | MtrunA17_Chr3g0102511 | 39.216 | 102 | 57 | 3 | 159 | 259 | 4 | 101 | 4.34e-15 | 75.1 |
| Msa0732690 | MtrunA17_Chr4g0002261 | 68.627 | 51 | 15 | 1 | 127 | 176 | 16 | 66 | 7.81e-15 | 67.8 |
| Msa0732690 | MtrunA17_Chr4g0002251 | 67.500 | 40 | 13 | 0 | 199 | 238 | 5 | 44 | 2.63e-13 | 63.9 |
| Msa0732690 | MtrunA17_Chr4g0061021 | 52.459 | 61 | 27 | 1 | 135 | 195 | 505 | 563 | 2.53e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0732690 | AT4G24470.1 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.92e-74 | 229 |
| Msa0732690 | AT4G24470.2 | 58.586 | 198 | 80 | 1 | 72 | 267 | 81 | 278 | 5.92e-74 | 229 |
| Msa0732690 | AT4G24470.3 | 62.778 | 180 | 65 | 1 | 72 | 249 | 81 | 260 | 1.63e-73 | 228 |
| Msa0732690 | AT1G51600.1 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.07e-68 | 215 |
| Msa0732690 | AT1G51600.2 | 59.893 | 187 | 64 | 4 | 70 | 245 | 79 | 265 | 1.07e-68 | 215 |
| Msa0732690 | AT3G21175.1 | 51.452 | 241 | 84 | 7 | 38 | 245 | 21 | 261 | 3.38e-68 | 214 |
| Msa0732690 | AT3G21175.2 | 51.667 | 240 | 83 | 7 | 38 | 245 | 21 | 259 | 2.57e-67 | 211 |
| Msa0732690 | AT3G21175.3 | 47.802 | 182 | 69 | 6 | 38 | 194 | 21 | 201 | 7.73e-38 | 133 |
| Msa0732690 | AT2G46670.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 126 | 180 | 3.51e-11 | 61.6 |
| Msa0732690 | AT2G46790.5 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 6.49e-11 | 62.4 |
| Msa0732690 | AT2G46790.4 | 50.909 | 55 | 27 | 0 | 129 | 183 | 254 | 308 | 6.49e-11 | 62.4 |
| Msa0732690 | AT2G46790.1 | 50.909 | 55 | 27 | 0 | 129 | 183 | 411 | 465 | 6.82e-11 | 62.8 |
| Msa0732690 | AT2G46790.2 | 50.909 | 55 | 27 | 0 | 129 | 183 | 294 | 348 | 8.25e-11 | 62.4 |
Find 96 sgRNAs with CRISPR-Local
Find 315 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACCTCTACAACAAATT+AGG | 0.141320 | 5_1:+45340921 | Msa0732690:five_prime_UTR |
| CGCTTCTCAAATTCTCTCTT+TGG | 0.239601 | 5_1:+45340952 | Msa0732690:five_prime_UTR |
| AAACTTTGAAGTGCAAATTC+AGG | 0.278085 | 5_1:-45341162 | None:intergenic |
| ATGGCCCTCGCCGCATCATT+GGG | 0.283489 | 5_1:-45344209 | None:intergenic |
| TATACTGGCACTTGTCTGTT+TGG | 0.307663 | 5_1:+45345446 | Msa0732690:three_prime_UTR |
| TCCAACTCCGATGCTGTTTA+CGG | 0.309806 | 5_1:+45341123 | Msa0732690:CDS |
| AAAACCTCTACAACAAATTA+GGG | 0.317019 | 5_1:+45340922 | Msa0732690:five_prime_UTR |
| GATGGCCCTCGCCGCATCAT+TGG | 0.329482 | 5_1:-45344210 | None:intergenic |
| GTTGTAGATGGTTGCTCAAT+AGG | 0.337983 | 5_1:-45345410 | None:intergenic |
| TTGGATGCACAGCTGTCTAT+TGG | 0.341864 | 5_1:+45345465 | Msa0732690:three_prime_UTR |
| TCGCTTTCGCCGGCGGTGAT+TGG | 0.347965 | 5_1:-45341027 | None:intergenic |
| CTGGTCTGTACCACAACTAT+TGG | 0.364949 | 5_1:-45343937 | None:intergenic |
| TAAATATATCAAAATACATT+GGG | 0.372782 | 5_1:-45345560 | None:intergenic |
| GAAAGAAATACCTGCTCAAC+AGG | 0.391041 | 5_1:-45345085 | None:intergenic |
| GGTCACTTTGCAATGCTTGT+GGG | 0.405446 | 5_1:+45344241 | Msa0732690:CDS |
| ACTATTTGCTAGTACTATAC+TGG | 0.409115 | 5_1:+45345431 | Msa0732690:exon |
| GGCGAAAGCGACGACGGTTC+CGG | 0.410307 | 5_1:+45341039 | Msa0732690:CDS |
| ATGATGCGGCGAGGGCCATC+TGG | 0.424046 | 5_1:+45344213 | Msa0732690:CDS |
| AAGCCTCATTACTTAGGTTC+CGG | 0.424048 | 5_1:+45342390 | Msa0732690:CDS |
| GTCGATGCCGGCGTCGGGAC+CGG | 0.425728 | 5_1:-45341058 | None:intergenic |
| CAGCTTACGCTGTCGTTTCG+TGG | 0.436824 | 5_1:+45341198 | Msa0732690:CDS |
| AGGTCACTTTGCAATGCTTG+TGG | 0.439332 | 5_1:+45344240 | Msa0732690:CDS |
| TTTCTGATGGACTGGCATCC+TGG | 0.442732 | 5_1:-45343968 | None:intergenic |
| TTGGGGAAAACAACAAAATC+AGG | 0.451746 | 5_1:-45345542 | None:intergenic |
| TCAATCGGTGTTGTTACTGT+TGG | 0.455881 | 5_1:+45341468 | Msa0732690:CDS |
| CAATCGGTGTTGTTACTGTT+GGG | 0.455920 | 5_1:+45341469 | Msa0732690:CDS |
| AGATAATTCCTGATGTCTCT+TGG | 0.456240 | 5_1:-45345056 | None:intergenic |
| ATCTTTCTTTCCTCTTCTGC+CGG | 0.458420 | 5_1:-45342409 | None:intergenic |
| ATGTAGGATGCAGCGAAAGA+AGG | 0.464044 | 5_1:+45343881 | Msa0732690:intron |
| TGAGCGTCGATGCCGGCGTC+GGG | 0.466145 | 5_1:-45341063 | None:intergenic |
| TACTAGCAAATAGTTGTAGA+TGG | 0.470683 | 5_1:-45345422 | None:intergenic |
| AAATTCTCTCTTTGGTGCAA+TGG | 0.471067 | 5_1:+45340960 | Msa0732690:exon |
| ATCTACTGTACCTGTTGAGC+AGG | 0.474916 | 5_1:+45345075 | Msa0732690:CDS |
| CGGTGCCTCAACAAAGTTTG+AGG | 0.475750 | 5_1:+45341524 | Msa0732690:CDS |
| ATTGAGAATCGAACCTTAGC+AGG | 0.477071 | 5_1:-45341249 | None:intergenic |
| CAAGCATTGCAAAGTGACCT+TGG | 0.478461 | 5_1:-45344237 | None:intergenic |
| GCCGTAAACAGCATCGGAGT+TGG | 0.479472 | 5_1:-45341124 | None:intergenic |
| TGTAGGATGCAGCGAAAGAA+GGG | 0.482115 | 5_1:+45343882 | Msa0732690:intron |
| TGGCATCCTGGCTAGAATCC+TGG | 0.494476 | 5_1:-45343956 | None:intergenic |
| TCAGTACGAAACGCACGGTA+TGG | 0.494591 | 5_1:+45341095 | Msa0732690:CDS |
| TGACTCTGTTACGCCTGCTA+AGG | 0.495608 | 5_1:+45341236 | Msa0732690:CDS |
| CTAAATATATCAAAATACAT+TGG | 0.495996 | 5_1:-45345561 | None:intergenic |
| ACCGCATTCACACCAGCATC+AGG | 0.496179 | 5_1:-45341505 | None:intergenic |
| ATCGAGAAGCCTCATTACTT+AGG | 0.501589 | 5_1:+45342384 | Msa0732690:CDS |
| TTTCATGTTACAGGTTCAAT+CGG | 0.502821 | 5_1:+45341453 | Msa0732690:intron |
| GGAACCGTCGTCGCTTTCGC+CGG | 0.503198 | 5_1:-45341037 | None:intergenic |
| TACTTAGGTTCCGGCAGAAG+AGG | 0.507196 | 5_1:+45342399 | Msa0732690:CDS |
| GACGGTTCCGGTCCCGACGC+CGG | 0.509123 | 5_1:+45341051 | Msa0732690:CDS |
| ACTACATCTAAGAAACAAGA+TGG | 0.513677 | 5_1:+45343912 | Msa0732690:CDS |
| TCCGATGCTGTTTACGGCAA+CGG | 0.517634 | 5_1:+45341129 | Msa0732690:CDS |
| TTGAGCGTCGATGCCGGCGT+CGG | 0.518484 | 5_1:-45341064 | None:intergenic |
| ATTGGTACTGTGGTGTTCAA+AGG | 0.519474 | 5_1:-45341009 | None:intergenic |
| CGACCCCAATGATGCGGCGA+GGG | 0.521861 | 5_1:+45344205 | Msa0732690:CDS |
| AGACCTTTCCAAGAGACATC+AGG | 0.523306 | 5_1:+45345048 | Msa0732690:CDS |
| TCACGAGATTTCTGATGGAC+TGG | 0.530433 | 5_1:-45343976 | None:intergenic |
| GAAACCCTAATTTGTTGTAG+AGG | 0.536285 | 5_1:-45340926 | None:intergenic |
| GGTTGAGAGTGTTCGTACAT+TGG | 0.539771 | 5_1:-45340988 | None:intergenic |
| ACCGTCGTCGCTTTCGCCGG+CGG | 0.540258 | 5_1:-45341034 | None:intergenic |
| TAAATCTAGATGAAATTACA+TGG | 0.543242 | 5_1:+45345589 | Msa0732690:three_prime_UTR |
| TGCGATGACTAGGTTGATCA+AGG | 0.549206 | 5_1:+45345338 | Msa0732690:intron |
| CAAAGTGACCTTGGACCAGA+TGG | 0.549647 | 5_1:-45344228 | None:intergenic |
| TGAGAGTGTTCGTACATTGG+TGG | 0.550890 | 5_1:-45340985 | None:intergenic |
| TTGATGTTGAGCGTCGATGC+CGG | 0.559465 | 5_1:-45341070 | None:intergenic |
| TACAGACCAGGATTCTAGCC+AGG | 0.560530 | 5_1:+45343950 | Msa0732690:CDS |
| CAAGCTCACGAGATTTCTGA+TGG | 0.565628 | 5_1:-45343981 | None:intergenic |
| CAATAGTTGTGGTACAGACC+AGG | 0.567890 | 5_1:+45343938 | Msa0732690:CDS |
| GGATGTGAACAACCTGATGC+TGG | 0.568670 | 5_1:+45341493 | Msa0732690:CDS |
| CTGCCGGAACCTAAGTAATG+AGG | 0.570375 | 5_1:-45342393 | None:intergenic |
| ATTCCTGATGTCTCTTGGAA+AGG | 0.575092 | 5_1:-45345051 | None:intergenic |
| GAAGAGAGTGCAGAAGGTGT+AGG | 0.575675 | 5_1:-45340860 | None:intergenic |
| GGTGCCTCAACAAAGTTTGA+GGG | 0.580121 | 5_1:+45341525 | Msa0732690:CDS |
| ATAGGAGTGATGTTGTGTGC+AGG | 0.580688 | 5_1:-45345392 | None:intergenic |
| GCCGTTGCCGTAAACAGCAT+CGG | 0.590158 | 5_1:-45341130 | None:intergenic |
| GGCGAGGGCCATCTGGTCCA+AGG | 0.590488 | 5_1:+45344220 | Msa0732690:CDS |
| CAAGATGGGTCCAATAGTTG+TGG | 0.595326 | 5_1:+45343927 | Msa0732690:CDS |
| TTAAATAGTTGCACACATTG+TGG | 0.601041 | 5_1:+45344168 | Msa0732690:intron |
| CAAGGTAACAACTCAGACTG+TGG | 0.601587 | 5_1:+45345356 | Msa0732690:CDS |
| TCGGTGTTGTTACTGTTGGG+TGG | 0.618046 | 5_1:+45341472 | Msa0732690:CDS |
| TACGTCAAGAAGTTGCACTC+AGG | 0.620095 | 5_1:+45342459 | Msa0732690:CDS |
| TTTGTGTTTGCGAAAGCGAG+GGG | 0.626213 | 5_1:-45340883 | None:intergenic |
| ACCACCCTCAAACTTTGTTG+AGG | 0.626395 | 5_1:-45341529 | None:intergenic |
| ACCGCCGGCGAAAGCGACGA+CGG | 0.634534 | 5_1:+45341033 | Msa0732690:CDS |
| TAGGAGTGATGTTGTGTGCA+GGG | 0.638031 | 5_1:-45345391 | None:intergenic |
| CTACATCTAAGAAACAAGAT+GGG | 0.649224 | 5_1:+45343913 | Msa0732690:CDS |
| AAATCTAGATGAAATTACAT+GGG | 0.649762 | 5_1:+45345590 | Msa0732690:three_prime_UTR |
| CAAAATCGACCCCAATGATG+CGG | 0.651595 | 5_1:+45344199 | Msa0732690:CDS |
| AAATATATCAAAATACATTG+GGG | 0.655044 | 5_1:-45345559 | None:intergenic |
| ACCACAGTACCAATCACCGC+CGG | 0.655305 | 5_1:+45341018 | Msa0732690:CDS |
| GCCTCAACAAAGTTTGAGGG+TGG | 0.655336 | 5_1:+45341528 | Msa0732690:CDS |
| TCGACCCCAATGATGCGGCG+AGG | 0.660240 | 5_1:+45344204 | Msa0732690:CDS |
| GATGCTGTTTACGGCAACGG+CGG | 0.661829 | 5_1:+45341132 | Msa0732690:CDS |
| ACCTGATGCTGGTGTGAATG+CGG | 0.662406 | 5_1:+45341504 | Msa0732690:CDS |
| GCCGGCGGTGATTGGTACTG+TGG | 0.669157 | 5_1:-45341019 | None:intergenic |
| TGGCCCTCGCCGCATCATTG+GGG | 0.672900 | 5_1:-45344208 | None:intergenic |
| CAAATTCAGTACGAAACGCA+CGG | 0.681403 | 5_1:+45341090 | Msa0732690:CDS |
| TTGTGTTTGCGAAAGCGAGG+GGG | 0.698518 | 5_1:-45340882 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTGAATTTTTTTATTATT+TGG | + | chr5_1:45341410-45341429 | Msa0732690:intron | 10.0% |
| !!! | GTTGAATTTTTTTATTATTT+GGG | + | chr5_1:45341411-45341430 | Msa0732690:intron | 10.0% |
| !!! | TTTATTTTATGTTTAAATGT+AGG | + | chr5_1:45343865-45343884 | Msa0732690:intron | 10.0% |
| !!! | TTTGATTAAAATTTGTTTAA+GGG | - | chr5_1:45345201-45345220 | None:intergenic | 10.0% |
| !!! | TTTTGATTAAAATTTGTTTA+AGG | - | chr5_1:45345202-45345221 | None:intergenic | 10.0% |
| !! | TAAATATATCAAAATACATT+GGG | - | chr5_1:45345563-45345582 | None:intergenic | 10.0% |
| !!! | TGTTTATTATTGATTTTTCT+TGG | + | chr5_1:45341302-45341321 | Msa0732690:intron | 15.0% |
| !! | AATGGAAATTATTAATTCTT+TGG | + | chr5_1:45342312-45342331 | Msa0732690:intron | 15.0% |
| !! | ATGGAAATTATTAATTCTTT+GGG | + | chr5_1:45342313-45342332 | Msa0732690:intron | 15.0% |
| !!! | CTTAATCTTGTATTTTTTAA+TGG | + | chr5_1:45343754-45343773 | Msa0732690:intron | 15.0% |
| !! | AAAAAAAAAAAAAAAGCCTT+TGG | - | chr5_1:45344298-45344317 | None:intergenic | 15.0% |
| !! | AAATATATCAAAATACATTG+GGG | - | chr5_1:45345562-45345581 | None:intergenic | 15.0% |
| !! | CTAAATATATCAAAATACAT+TGG | - | chr5_1:45345564-45345583 | None:intergenic | 15.0% |
| !! | ATTTGAATATGCATTAGATT+TGG | + | chr5_1:45341633-45341652 | Msa0732690:intron | 20.0% |
| !! | TTTGAATATGCATTAGATTT+GGG | + | chr5_1:45341634-45341653 | Msa0732690:intron | 20.0% |
| !! | CATTATTCGTAAATCATAAT+AGG | + | chr5_1:45341869-45341888 | Msa0732690:intron | 20.0% |
| !!! | ATTATTAATTCTTTGGGTTT+TGG | + | chr5_1:45342319-45342338 | Msa0732690:intron | 20.0% |
| !! | AAGAGAATAATATAACTGAA+TGG | + | chr5_1:45342651-45342670 | Msa0732690:intron | 20.0% |
| !! | TGAAAATAATTGTATGTAAG+AGG | - | chr5_1:45342757-45342776 | None:intergenic | 20.0% |
| !! | TATACAACAACAGATATTTA+TGG | + | chr5_1:45343010-45343029 | Msa0732690:intron | 20.0% |
| !! | ATACAACAACAGATATTTAT+GGG | + | chr5_1:45343011-45343030 | Msa0732690:intron | 20.0% |
| !! | TTTATCAACAAATTTAACAG+AGG | - | chr5_1:45343154-45343173 | None:intergenic | 20.0% |
| !!! | TTGTTTCTAAACTAAACAAT+AGG | - | chr5_1:45343447-45343466 | None:intergenic | 20.0% |
| !! | CTATGAGATATAAATTATTG+AGG | - | chr5_1:45343580-45343599 | None:intergenic | 20.0% |
| !!! | TATAAAAATGTATTGATGAG+AGG | - | chr5_1:45343731-45343750 | None:intergenic | 20.0% |
| !!! | TCTCATCAATACATTTTTAT+AGG | + | chr5_1:45343730-45343749 | Msa0732690:intron | 20.0% |
| !! | CATAAAATAAAGAGTGAAAT+TGG | - | chr5_1:45343856-45343875 | None:intergenic | 20.0% |
| !!! | TCGGAACAAAAAATATATTT+TGG | - | chr5_1:45344025-45344044 | None:intergenic | 20.0% |
| !! | TAAACAAGCAATTTAAAGAA+TGG | - | chr5_1:45344151-45344170 | None:intergenic | 20.0% |
| !!! | TTTTTTTGAAAATTTGTCTG+TGG | + | chr5_1:45344317-45344336 | Msa0732690:intron | 20.0% |
| !!! | TTTTTTGAAAATTTGTCTGT+GGG | + | chr5_1:45344318-45344337 | Msa0732690:intron | 20.0% |
| !!! | TTTGTTGTGAAACAAATTTA+TGG | - | chr5_1:45344699-45344718 | None:intergenic | 20.0% |
| !!! | TTTGGGAATATCAAAATTTT+GGG | + | chr5_1:45344770-45344789 | Msa0732690:intron | 20.0% |
| !! | CATCATAATCTATACTATAA+AGG | + | chr5_1:45345134-45345153 | Msa0732690:intron | 20.0% |
| !! | ATCTATACTATAAAGGAAAT+AGG | + | chr5_1:45345141-45345160 | Msa0732690:intron | 20.0% |
| !! | TAAATCTAGATGAAATTACA+TGG | + | chr5_1:45345589-45345608 | Msa0732690:three_prime_UTR | 20.0% |
| !! | AAATCTAGATGAAATTACAT+GGG | + | chr5_1:45345590-45345609 | Msa0732690:three_prime_UTR | 20.0% |
| !!! | TAGAGGTTTTGAGTTTAATT+GGG | - | chr5_1:45340912-45340931 | None:intergenic | 25.0% |
| ! | AAAACCTCTACAACAAATTA+GGG | + | chr5_1:45340922-45340941 | Msa0732690:five_prime_UTR | 25.0% |
| ! | AATCATAATAGGCAAAGTAT+CGG | + | chr5_1:45341880-45341899 | Msa0732690:intron | 25.0% |
| ! | TTAATTGTTTGATACTTTCC+AGG | - | chr5_1:45341935-45341954 | None:intergenic | 25.0% |
| ! | AAATTATATCCGATACGTAT+CGG | - | chr5_1:45341986-45342005 | None:intergenic | 25.0% |
| !! | ACGTATCGGATATAATTTTA+TGG | + | chr5_1:45341988-45342007 | Msa0732690:intron | 25.0% |
| ! | ATAAGTACTACTACTATCAT+GGG | - | chr5_1:45342031-45342050 | None:intergenic | 25.0% |
| !! | AGTACTTATGATTTCCTTTT+TGG | + | chr5_1:45342042-45342061 | Msa0732690:intron | 25.0% |
| !! | TGTAGTTGACTATATTTTGT+AGG | - | chr5_1:45342365-45342384 | None:intergenic | 25.0% |
| ! | AAAGAAAACACAATCATACT+GGG | - | chr5_1:45342722-45342741 | None:intergenic | 25.0% |
| ! | CATATTACATAGAATCATGT+TGG | + | chr5_1:45342788-45342807 | Msa0732690:intron | 25.0% |
| ! | TGAGAATCAAAATCATTTGA+AGG | - | chr5_1:45343268-45343287 | None:intergenic | 25.0% |
| ! | TTTATATCTCATAGAGTGAA+AGG | + | chr5_1:45343586-45343605 | Msa0732690:intron | 25.0% |
| !!! | TTTAATGGACTAAAAACTGA+CGG | + | chr5_1:45343769-45343788 | Msa0732690:intron | 25.0% |
| !!! | GATGCATTGTTATTTCATAT+TGG | - | chr5_1:45344085-45344104 | None:intergenic | 25.0% |
| ! | AAGATAAAGCAAAACAAACA+CGG | - | chr5_1:45344548-45344567 | None:intergenic | 25.0% |
| !!! | AGATATTTTGAAATGTCTTG+TGG | + | chr5_1:45344621-45344640 | Msa0732690:intron | 25.0% |
| !! | GTTTGGGAATATCAAAATTT+TGG | + | chr5_1:45344769-45344788 | Msa0732690:intron | 25.0% |
| !!! | ATATTGCTTTTTGAACTTTG+TGG | + | chr5_1:45344804-45344823 | Msa0732690:intron | 25.0% |
| !!! | TTTCTTTTAAAACTTGTCAG+AGG | + | chr5_1:45344832-45344851 | Msa0732690:intron | 25.0% |
| !!! | TTCTTTTAAAACTTGTCAGA+GGG | + | chr5_1:45344833-45344852 | Msa0732690:intron | 25.0% |
| !! | ATAAAGGAAATAGGTTGTTT+TGG | + | chr5_1:45345150-45345169 | Msa0732690:intron | 25.0% |
| !!! | TAAAGGAAATAGGTTGTTTT+GGG | + | chr5_1:45345151-45345170 | Msa0732690:intron | 25.0% |
| !! | TGTTTAAGGGTATAATTGAA+AGG | - | chr5_1:45345188-45345207 | None:intergenic | 25.0% |
| ! | CAAGCAAAAAAATGGTAAAA+TGG | - | chr5_1:45345320-45345339 | None:intergenic | 25.0% |
| !! | ATTTTGTCTGGATATACTTT+TGG | + | chr5_1:45345634-45345653 | Msa0732690:three_prime_UTR | 25.0% |
| !! | TTTTGTCTGGATATACTTTT+GGG | + | chr5_1:45345635-45345654 | Msa0732690:three_prime_UTR | 25.0% |
| !!! | GTAGAGGTTTTGAGTTTAAT+TGG | - | chr5_1:45340913-45340932 | None:intergenic | 30.0% |
| CAAAACCTCTACAACAAATT+AGG | + | chr5_1:45340921-45340940 | Msa0732690:five_prime_UTR | 30.0% | |
| !! | AAACTTTGAAGTGCAAATTC+AGG | - | chr5_1:45341165-45341184 | None:intergenic | 30.0% |
| TGGGATTGAAAATTCGTATT+TGG | + | chr5_1:45341430-45341449 | Msa0732690:intron | 30.0% | |
| TTTCATGTTACAGGTTCAAT+CGG | + | chr5_1:45341453-45341472 | Msa0732690:intron | 30.0% | |
| ! | ATTTTCAACATGTTACAAGC+TGG | - | chr5_1:45341608-45341627 | None:intergenic | 30.0% |
| AGGAGTGGATATATTGATAA+TGG | + | chr5_1:45341784-45341803 | Msa0732690:intron | 30.0% | |
| ATTTACCAATTCCTATGTTG+AGG | - | chr5_1:45341811-45341830 | None:intergenic | 30.0% | |
| ! | GATATAATTTTATGGTGCTC+CGG | + | chr5_1:45341996-45342015 | Msa0732690:intron | 30.0% |
| CATAAGTACTACTACTATCA+TGG | - | chr5_1:45342032-45342051 | None:intergenic | 30.0% | |
| ! | CTTATGATTTCCTTTTTGGA+CGG | + | chr5_1:45342046-45342065 | Msa0732690:intron | 30.0% |
| ATACGTGCTTCATAGATAAT+AGG | + | chr5_1:45342267-45342286 | Msa0732690:intron | 30.0% | |
| GATTAATGTTCAAGTGCAAA+TGG | + | chr5_1:45342294-45342313 | Msa0732690:intron | 30.0% | |
| CAAAGAAAACACAATCATAC+TGG | - | chr5_1:45342723-45342742 | None:intergenic | 30.0% | |
| ATAGAATCATGTTGGCATTT+AGG | + | chr5_1:45342796-45342815 | Msa0732690:intron | 30.0% | |
| !! | AGGGTCTGACAATTTAATTT+TGG | + | chr5_1:45342937-45342956 | Msa0732690:intron | 30.0% |
| ! | GTATAGTCAATTTGGTAACA+GGG | - | chr5_1:45342963-45342982 | None:intergenic | 30.0% |
| ! | TGTATAGTCAATTTGGTAAC+AGG | - | chr5_1:45342964-45342983 | None:intergenic | 30.0% |
| CTGTTGTTGTATAGTCAATT+TGG | - | chr5_1:45342971-45342990 | None:intergenic | 30.0% | |
| CAAATTGACTATACAACAAC+AGG | + | chr5_1:45342969-45342988 | Msa0732690:intron | 30.0% | |
| ! | GTATAGTCAATTTGGTAACA+GGG | - | chr5_1:45342963-45342982 | None:intergenic | 30.0% |
| ! | TGTATAGTCAATTTGGTAAC+AGG | - | chr5_1:45342964-45342983 | None:intergenic | 30.0% |
| CTGTTGTTGTATAGTCAATT+TGG | - | chr5_1:45342971-45342990 | None:intergenic | 30.0% | |
| ! | CAATTTCAACTTCGTTGATT+TGG | + | chr5_1:45343034-45343053 | Msa0732690:intron | 30.0% |
| !! | CTTTTTAATTGTGGAGGAAT+TGG | + | chr5_1:45343091-45343110 | Msa0732690:intron | 30.0% |
| ! | TTCATTTATGCCCTTTTGAT+TGG | + | chr5_1:45343176-45343195 | Msa0732690:intron | 30.0% |
| GAAAATAACACACAAAACCA+AGG | - | chr5_1:45343205-45343224 | None:intergenic | 30.0% | |
| CTAAGTTATCCTCAAATTCT+CGG | - | chr5_1:45343315-45343334 | None:intergenic | 30.0% | |
| ! | TGTTAGTTTCTTGTCTACTA+TGG | - | chr5_1:45343484-45343503 | None:intergenic | 30.0% |
| TGGTGTATGCTATATGTAAT+TGG | + | chr5_1:45343640-45343659 | Msa0732690:intron | 30.0% | |
| ATGTTCCACTTTCTCTTATT+TGG | + | chr5_1:45343807-45343826 | Msa0732690:intron | 30.0% | |
| ACTACATCTAAGAAACAAGA+TGG | + | chr5_1:45343912-45343931 | Msa0732690:CDS | 30.0% | |
| CTACATCTAAGAAACAAGAT+GGG | + | chr5_1:45343913-45343932 | Msa0732690:CDS | 30.0% | |
| !!! | GCTTGTTTTTACTGTTGTTA+TGG | + | chr5_1:45343999-45344018 | Msa0732690:intron | 30.0% |
| ACAAGCAATTTAAAGAATGG+TGG | - | chr5_1:45344148-45344167 | None:intergenic | 30.0% | |
| TTAAATAGTTGCACACATTG+TGG | + | chr5_1:45344168-45344187 | Msa0732690:intron | 30.0% | |
| ATTTATGAGCTCTGTCTATT+TGG | + | chr5_1:45344591-45344610 | Msa0732690:intron | 30.0% | |
| CAACAAAATGAAGAATCTAG+TGG | + | chr5_1:45344712-45344731 | Msa0732690:intron | 30.0% | |
| ATCTAGTGGTATATAATGTC+TGG | + | chr5_1:45344726-45344745 | Msa0732690:intron | 30.0% | |
| ! | AGACGATAATTCGATTTTTG+AGG | - | chr5_1:45344882-45344901 | None:intergenic | 30.0% |
| AAAATCGAATTATCGTCTCT+TGG | + | chr5_1:45344884-45344903 | Msa0732690:intron | 30.0% | |
| AAATCGAATTATCGTCTCTT+GGG | + | chr5_1:45344885-45344904 | Msa0732690:intron | 30.0% | |
| GGGAACTGTTAATAATAAAC+TGG | - | chr5_1:45344985-45345004 | None:intergenic | 30.0% | |
| TACTAGCAAATAGTTGTAGA+TGG | - | chr5_1:45345425-45345444 | None:intergenic | 30.0% | |
| ! | ACTATTTGCTAGTACTATAC+TGG | + | chr5_1:45345431-45345450 | Msa0732690:exon | 30.0% |
| !! | GAAACCCTAATTTGTTGTAG+AGG | - | chr5_1:45340929-45340948 | None:intergenic | 35.0% |
| ! | AAATTCTCTCTTTGGTGCAA+TGG | + | chr5_1:45340960-45340979 | Msa0732690:exon | 35.0% |
| AAGGTTCGATTCTCAATTGT+TGG | + | chr5_1:45341255-45341274 | Msa0732690:intron | 35.0% | |
| ! | CGTATTTGGTTTCATGTTAC+AGG | + | chr5_1:45341444-45341463 | Msa0732690:intron | 35.0% |
| TCAACAATACCTGTAGGTTA+GGG | + | chr5_1:45341730-45341749 | Msa0732690:intron | 35.0% | |
| TAGGTTAGGGGATATAAAGA+TGG | + | chr5_1:45341743-45341762 | Msa0732690:intron | 35.0% | |
| !! | TTGATAATGGTCCTCAACAT+AGG | + | chr5_1:45341797-45341816 | Msa0732690:intron | 35.0% |
| ATACTTTCCAGGTACATATC+AGG | - | chr5_1:45341924-45341943 | None:intergenic | 35.0% | |
| ! | ATCTTAAGTACCGTCCAAAA+AGG | - | chr5_1:45342059-45342078 | None:intergenic | 35.0% |
| CACGTATACTTGACATGATA+AGG | - | chr5_1:45342254-45342273 | None:intergenic | 35.0% | |
| TTCATCATGCGAATGATGAT+TGG | + | chr5_1:45342547-45342566 | Msa0732690:intron | 35.0% | |
| TCATCATGCGAATGATGATT+GGG | + | chr5_1:45342548-45342567 | Msa0732690:intron | 35.0% | |
| ! | ATTGTGTTTTCTTTGCATCC+AGG | + | chr5_1:45342728-45342747 | Msa0732690:intron | 35.0% |
| !! | ATTGCCTTCTCATTTTGAAG+TGG | + | chr5_1:45342888-45342907 | Msa0732690:intron | 35.0% |
| ! | TATGCCACTTCAAAATGAGA+AGG | - | chr5_1:45342895-45342914 | None:intergenic | 35.0% |
| !!! | TTCTCATTTTGAAGTGGCAT+AGG | + | chr5_1:45342894-45342913 | Msa0732690:intron | 35.0% |
| ! | GCATAGGATGGTAGATTTTA+CGG | + | chr5_1:45342910-45342929 | Msa0732690:intron | 35.0% |
| AACCTATACTATTGAGAACC+TGG | + | chr5_1:45343067-45343086 | Msa0732690:intron | 35.0% | |
| !! | GAACCTGGTCTTTTTAATTG+TGG | + | chr5_1:45343082-45343101 | Msa0732690:intron | 35.0% |
| CGAGAATTTGAGGATAACTT+AGG | + | chr5_1:45343313-45343332 | Msa0732690:intron | 35.0% | |
| GAATGTTGTTCTTTGACTAG+AGG | - | chr5_1:45343533-45343552 | None:intergenic | 35.0% | |
| ATCATGCATCCAAGATACAT+GGG | - | chr5_1:45343556-45343575 | None:intergenic | 35.0% | |
| TATCATGCATCCAAGATACA+TGG | - | chr5_1:45343557-45343576 | None:intergenic | 35.0% | |
| ATATCTCATAGAGTGAAAGG+TGG | + | chr5_1:45343589-45343608 | Msa0732690:intron | 35.0% | |
| AAGAGCCAAATAAGAGAAAG+TGG | - | chr5_1:45343815-45343834 | None:intergenic | 35.0% | |
| ATTGCTACAACTACAAGTCT+CGG | - | chr5_1:45344044-45344063 | None:intergenic | 35.0% | |
| TGCAAATTCCAATGCAATGA+AGG | - | chr5_1:45344416-45344435 | None:intergenic | 35.0% | |
| !!! | TGGTCTATTTTTGCACTGTT+TGG | + | chr5_1:45344752-45344771 | Msa0732690:intron | 35.0% |
| !!! | GGTCTATTTTTGCACTGTTT+GGG | + | chr5_1:45344753-45344772 | Msa0732690:intron | 35.0% |
| !! | ATTCGATTTTTGAGGATGAG+TGG | - | chr5_1:45344874-45344893 | None:intergenic | 35.0% |
| AATCGAATTATCGTCTCTTG+GGG | + | chr5_1:45344886-45344905 | Msa0732690:intron | 35.0% | |
| GATTCACAGTTGAACGAATT+AGG | - | chr5_1:45344942-45344961 | None:intergenic | 35.0% | |
| AGATAATTCCTGATGTCTCT+TGG | - | chr5_1:45345059-45345078 | None:intergenic | 35.0% | |
| AGTCATCGCAAGCAAAAAAA+TGG | - | chr5_1:45345328-45345347 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGCTTGCGATGACT+AGG | + | chr5_1:45345328-45345347 | Msa0732690:intron | 35.0% |
| TTGGGGAAAACAACAAAATC+AGG | - | chr5_1:45345545-45345564 | None:intergenic | 35.0% | |
| ! | GATTCAAGTGAGATTTTGTC+TGG | + | chr5_1:45345622-45345641 | Msa0732690:three_prime_UTR | 35.0% |
| ! | TTTTGTGTTTGCGAAAGCGA+GGG | - | chr5_1:45340887-45340906 | None:intergenic | 40.0% |
| ! | TTTTTGTGTTTGCGAAAGCG+AGG | - | chr5_1:45340888-45340907 | None:intergenic | 40.0% |
| CGCTTCTCAAATTCTCTCTT+TGG | + | chr5_1:45340952-45340971 | Msa0732690:five_prime_UTR | 40.0% | |
| ATTGGTACTGTGGTGTTCAA+AGG | - | chr5_1:45341012-45341031 | None:intergenic | 40.0% | |
| CAAATTCAGTACGAAACGCA+CGG | + | chr5_1:45341090-45341109 | Msa0732690:CDS | 40.0% | |
| ATTGAGAATCGAACCTTAGC+AGG | - | chr5_1:45341252-45341271 | None:intergenic | 40.0% | |
| !! | TCAATCGGTGTTGTTACTGT+TGG | + | chr5_1:45341468-45341487 | Msa0732690:CDS | 40.0% |
| !! | CAATCGGTGTTGTTACTGTT+GGG | + | chr5_1:45341469-45341488 | Msa0732690:CDS | 40.0% |
| GGGAAGTAAATACTAGTGAG+TGG | + | chr5_1:45341654-45341673 | Msa0732690:intron | 40.0% | |
| !! | GTGATTAATTTGCCGATCTG+TGG | + | chr5_1:45341686-45341705 | Msa0732690:intron | 40.0% |
| GCATTTAGAAAGCCACAGAT+CGG | - | chr5_1:45341701-45341720 | None:intergenic | 40.0% | |
| ! | GGCTTTCTAAATGCTAGCTT+AGG | + | chr5_1:45341707-45341726 | Msa0732690:intron | 40.0% |
| CTTAGGTCAACAATACCTGT+AGG | + | chr5_1:45341724-45341743 | Msa0732690:intron | 40.0% | |
| GTCAACAATACCTGTAGGTT+AGG | + | chr5_1:45341729-45341748 | Msa0732690:intron | 40.0% | |
| CAACAATACCTGTAGGTTAG+GGG | + | chr5_1:45341731-45341750 | Msa0732690:intron | 40.0% | |
| CTTTATATCCCCTAACCTAC+AGG | - | chr5_1:45341742-45341761 | None:intergenic | 40.0% | |
| TAGGGGATATAAAGATGGCT+TGG | + | chr5_1:45341748-45341767 | Msa0732690:intron | 40.0% | |
| ATGGTCCTCAACATAGGAAT+TGG | + | chr5_1:45341803-45341822 | Msa0732690:intron | 40.0% | |
| TGAATGACACTCTGTGTGAA+TGG | + | chr5_1:45341846-45341865 | Msa0732690:intron | 40.0% | |
| ATATCAGGATGTATCCGTGT+CGG | - | chr5_1:45341909-45341928 | None:intergenic | 40.0% | |
| GATACATCCTGATATGTACC+TGG | + | chr5_1:45341914-45341933 | Msa0732690:intron | 40.0% | |
| ! | ATAGATTGGCCGATACGTAT+CGG | + | chr5_1:45341974-45341993 | Msa0732690:intron | 40.0% |
| ! | ATTTTATGGTGCTCCGGATA+CGG | + | chr5_1:45342002-45342021 | Msa0732690:intron | 40.0% |
| ATAAGGATACGACACGGATA+CGG | - | chr5_1:45342237-45342256 | None:intergenic | 40.0% | |
| GACATGATAAGGATACGACA+CGG | - | chr5_1:45342243-45342262 | None:intergenic | 40.0% | |
| !! | AATTCTTTGGGTTTTGGTGC+AGG | + | chr5_1:45342325-45342344 | Msa0732690:intron | 40.0% |
| ATCGAGAAGCCTCATTACTT+AGG | + | chr5_1:45342384-45342403 | Msa0732690:CDS | 40.0% | |
| AAGCCTCATTACTTAGGTTC+CGG | + | chr5_1:45342390-45342409 | Msa0732690:CDS | 40.0% | |
| ATCTTTCTTTCCTCTTCTGC+CGG | - | chr5_1:45342412-45342431 | None:intergenic | 40.0% | |
| TATGAGATCTGTTAGCAAGC+TGG | + | chr5_1:45342679-45342698 | Msa0732690:intron | 40.0% | |
| ATTGTATGTAAGAGGAAGCC+TGG | - | chr5_1:45342749-45342768 | None:intergenic | 40.0% | |
| !!! | CATTTTGAAGTGGCATAGGA+TGG | + | chr5_1:45342898-45342917 | Msa0732690:intron | 40.0% |
| ! | TAGGATGGTAGATTTTACGG+TGG | + | chr5_1:45342913-45342932 | Msa0732690:intron | 40.0% |
| ! | AGGATGGTAGATTTTACGGT+GGG | + | chr5_1:45342914-45342933 | Msa0732690:intron | 40.0% |
| GACCAGGTTCTCAATAGTAT+AGG | - | chr5_1:45343072-45343091 | None:intergenic | 40.0% | |
| CCTCCACAATTAAAAAGACC+AGG | - | chr5_1:45343088-45343107 | None:intergenic | 40.0% | |
| !! | CCTGGTCTTTTTAATTGTGG+AGG | + | chr5_1:45343085-45343104 | Msa0732690:intron | 40.0% |
| ACCAAGGACACCAATCAAAA+GGG | - | chr5_1:45343189-45343208 | None:intergenic | 40.0% | |
| AACCAAGGACACCAATCAAA+AGG | - | chr5_1:45343190-45343209 | None:intergenic | 40.0% | |
| ACTAGTTGACCGAGAATTTG+AGG | + | chr5_1:45343303-45343322 | Msa0732690:intron | 40.0% | |
| ! | CATACCAGAACTCTTTTGAC+AGG | - | chr5_1:45343351-45343370 | None:intergenic | 40.0% |
| GTTCTTTGACTAGAGGAAGA+AGG | - | chr5_1:45343526-45343545 | None:intergenic | 40.0% | |
| ACAACATTCCCCATGTATCT+TGG | + | chr5_1:45343544-45343563 | Msa0732690:intron | 40.0% | |
| TCATGCATCCAAGATACATG+GGG | - | chr5_1:45343555-45343574 | None:intergenic | 40.0% | |
| ATAATGCCTTGTGACATGCT+TGG | + | chr5_1:45343620-45343639 | Msa0732690:intron | 40.0% | |
| ! | GCATCAAGTTTTCTCTTCAG+TGG | + | chr5_1:45344100-45344119 | Msa0732690:intron | 40.0% |
| ! | CAAGTTTTCTCTTCAGTGGA+AGG | + | chr5_1:45344104-45344123 | Msa0732690:intron | 40.0% |
| TTCCAATGCAATGAAGGAAC+CGG | - | chr5_1:45344410-45344429 | None:intergenic | 40.0% | |
| TGGTATATAATGTCTGGCAC+TGG | + | chr5_1:45344732-45344751 | Msa0732690:intron | 40.0% | |
| ACCAAGACCATTGTCAAAAG+GGG | - | chr5_1:45345006-45345025 | None:intergenic | 40.0% | |
| GACCAAGACCATTGTCAAAA+GGG | - | chr5_1:45345007-45345026 | None:intergenic | 40.0% | |
| AGACCAAGACCATTGTCAAA+AGG | - | chr5_1:45345008-45345027 | None:intergenic | 40.0% | |
| ! | ATGGTCTTGGTCTATTCTAC+AGG | + | chr5_1:45345015-45345034 | Msa0732690:intron | 40.0% |
| ! | TGGTCTTGGTCTATTCTACA+GGG | + | chr5_1:45345016-45345035 | Msa0732690:intron | 40.0% |
| ATTCCTGATGTCTCTTGGAA+AGG | - | chr5_1:45345054-45345073 | None:intergenic | 40.0% | |
| GAAAGAAATACCTGCTCAAC+AGG | - | chr5_1:45345088-45345107 | None:intergenic | 40.0% | |
| GTTGTAGATGGTTGCTCAAT+AGG | - | chr5_1:45345413-45345432 | None:intergenic | 40.0% | |
| TATACTGGCACTTGTCTGTT+TGG | + | chr5_1:45345446-45345465 | Msa0732690:three_prime_UTR | 40.0% | |
| TTTGTGTTTGCGAAAGCGAG+GGG | - | chr5_1:45340886-45340905 | None:intergenic | 45.0% | |
| !! | TGAGAGTGTTCGTACATTGG+TGG | - | chr5_1:45340988-45341007 | None:intergenic | 45.0% |
| !! | GGTTGAGAGTGTTCGTACAT+TGG | - | chr5_1:45340991-45341010 | None:intergenic | 45.0% |
| ! | TCCAACTCCGATGCTGTTTA+CGG | + | chr5_1:45341123-45341142 | Msa0732690:CDS | 45.0% |
| GGTGCCTCAACAAAGTTTGA+GGG | + | chr5_1:45341525-45341544 | Msa0732690:CDS | 45.0% | |
| ACCACCCTCAAACTTTGTTG+AGG | - | chr5_1:45341532-45341551 | None:intergenic | 45.0% | |
| !! | CAAAGTATCGGTTTCCGACA+CGG | + | chr5_1:45341892-45341911 | Msa0732690:intron | 45.0% |
| !! | GGTTTTGGTGCAGGAATCAA+TGG | + | chr5_1:45342334-45342353 | Msa0732690:intron | 45.0% |
| TACGTCAAGAAGTTGCACTC+AGG | + | chr5_1:45342459-45342478 | Msa0732690:CDS | 45.0% | |
| AGGTCCGATAACTATCCTAC+TGG | + | chr5_1:45342479-45342498 | Msa0732690:intron | 45.0% | |
| GGTCCGATAACTATCCTACT+GGG | + | chr5_1:45342480-45342499 | Msa0732690:intron | 45.0% | |
| GTCCGATAACTATCCTACTG+GGG | + | chr5_1:45342481-45342500 | Msa0732690:intron | 45.0% | |
| AGCCCCAGTAGGATAGTTAT+CGG | - | chr5_1:45342486-45342505 | None:intergenic | 45.0% | |
| CTTAAAATGCAAGCCCCAGT+AGG | - | chr5_1:45342497-45342516 | None:intergenic | 45.0% | |
| ! | TCTGTTAGCAAGCTGGTCTA+CGG | + | chr5_1:45342686-45342705 | Msa0732690:intron | 45.0% |
| GTTGGCATTTAGGCTTGACT+TGG | + | chr5_1:45342806-45342825 | Msa0732690:intron | 45.0% | |
| CAGCACATATGGTCTGTCTT+GGG | - | chr5_1:45342842-45342861 | None:intergenic | 45.0% | |
| CTGTGATAGACCAGCACATA+TGG | - | chr5_1:45342853-45342872 | None:intergenic | 45.0% | |
| ! | ATGGTAGATTTTACGGTGGG+AGG | + | chr5_1:45342917-45342936 | Msa0732690:intron | 45.0% |
| ! | TGGTAGATTTTACGGTGGGA+GGG | + | chr5_1:45342918-45342937 | Msa0732690:intron | 45.0% |
| GTTGCCTGTCAAAAGAGTTC+TGG | + | chr5_1:45343344-45343363 | Msa0732690:intron | 45.0% | |
| CATACACCAAGCATGTCACA+AGG | - | chr5_1:45343629-45343648 | None:intergenic | 45.0% | |
| ATGTAGGATGCAGCGAAAGA+AGG | + | chr5_1:45343881-45343900 | Msa0732690:intron | 45.0% | |
| TGTAGGATGCAGCGAAAGAA+GGG | + | chr5_1:45343882-45343901 | Msa0732690:intron | 45.0% | |
| CAAGATGGGTCCAATAGTTG+TGG | + | chr5_1:45343927-45343946 | Msa0732690:CDS | 45.0% | |
| CTGGTCTGTACCACAACTAT+TGG | - | chr5_1:45343940-45343959 | None:intergenic | 45.0% | |
| CAATAGTTGTGGTACAGACC+AGG | + | chr5_1:45343938-45343957 | Msa0732690:CDS | 45.0% | |
| ! | TCACGAGATTTCTGATGGAC+TGG | - | chr5_1:45343979-45343998 | None:intergenic | 45.0% |
| CAAGCTCACGAGATTTCTGA+TGG | - | chr5_1:45343984-45344003 | None:intergenic | 45.0% | |
| CAAAATCGACCCCAATGATG+CGG | + | chr5_1:45344199-45344218 | Msa0732690:CDS | 45.0% | |
| ! | CAAGCATTGCAAAGTGACCT+TGG | - | chr5_1:45344240-45344259 | None:intergenic | 45.0% |
| ! | AGGTCACTTTGCAATGCTTG+TGG | + | chr5_1:45344240-45344259 | Msa0732690:CDS | 45.0% |
| ! | GGTCACTTTGCAATGCTTGT+GGG | + | chr5_1:45344241-45344260 | Msa0732690:CDS | 45.0% |
| ! | CAATGCTTGTGGGCTTTTCT+GGG | + | chr5_1:45344251-45344270 | Msa0732690:CDS | 45.0% |
| ! | TGGGCTTTTCTGGGCAAATA+GGG | + | chr5_1:45344260-45344279 | Msa0732690:CDS | 45.0% |
| ! | CTTTTCTGGGCAAATAGGGT+AGG | + | chr5_1:45344264-45344283 | Msa0732690:intron | 45.0% |
| TCCAATGCAATGAAGGAACC+GGG | - | chr5_1:45344409-45344428 | None:intergenic | 45.0% | |
| ! | ACAGTTCCCCCTTTTGACAA+TGG | + | chr5_1:45344996-45345015 | Msa0732690:intron | 45.0% |
| CCAAGACCATTGTCAAAAGG+GGG | - | chr5_1:45345005-45345024 | None:intergenic | 45.0% | |
| AGACCTTTCCAAGAGACATC+AGG | + | chr5_1:45345048-45345067 | Msa0732690:CDS | 45.0% | |
| ATCTACTGTACCTGTTGAGC+AGG | + | chr5_1:45345075-45345094 | Msa0732690:CDS | 45.0% | |
| !!! | GGAAATAGGTTGTTTTGGGC+TGG | + | chr5_1:45345155-45345174 | Msa0732690:intron | 45.0% |
| !! | TGCGATGACTAGGTTGATCA+AGG | + | chr5_1:45345338-45345357 | Msa0732690:intron | 45.0% |
| CAAGGTAACAACTCAGACTG+TGG | + | chr5_1:45345356-45345375 | Msa0732690:CDS | 45.0% | |
| TAGGAGTGATGTTGTGTGCA+GGG | - | chr5_1:45345394-45345413 | None:intergenic | 45.0% | |
| ATAGGAGTGATGTTGTGTGC+AGG | - | chr5_1:45345395-45345414 | None:intergenic | 45.0% | |
| TTGGATGCACAGCTGTCTAT+TGG | + | chr5_1:45345465-45345484 | Msa0732690:three_prime_UTR | 45.0% | |
| !!! | TTTATTTTTTTTAAATAGAT+TGG | + | chr5_1:45341960-45341979 | Msa0732690:intron | 5.0% |
| !!! | AATTTTTTATTAAAGTATTT+TGG | + | chr5_1:45342178-45342197 | Msa0732690:intron | 5.0% |
| ! | GAAGAGAGTGCAGAAGGTGT+AGG | - | chr5_1:45340863-45340882 | None:intergenic | 50.0% |
| TTGTGTTTGCGAAAGCGAGG+GGG | - | chr5_1:45340885-45340904 | None:intergenic | 50.0% | |
| !! | TTGATGTTGAGCGTCGATGC+CGG | - | chr5_1:45341073-45341092 | None:intergenic | 50.0% |
| TCAGTACGAAACGCACGGTA+TGG | + | chr5_1:45341095-45341114 | Msa0732690:CDS | 50.0% | |
| ! | TCCGATGCTGTTTACGGCAA+CGG | + | chr5_1:45341129-45341148 | Msa0732690:CDS | 50.0% |
| TGACTCTGTTACGCCTGCTA+AGG | + | chr5_1:45341236-45341255 | Msa0732690:CDS | 50.0% | |
| !! | TCGGTGTTGTTACTGTTGGG+TGG | + | chr5_1:45341472-45341491 | Msa0732690:CDS | 50.0% |
| GGATGTGAACAACCTGATGC+TGG | + | chr5_1:45341493-45341512 | Msa0732690:CDS | 50.0% | |
| ACCTGATGCTGGTGTGAATG+CGG | + | chr5_1:45341504-45341523 | Msa0732690:CDS | 50.0% | |
| CGGTGCCTCAACAAAGTTTG+AGG | + | chr5_1:45341524-45341543 | Msa0732690:CDS | 50.0% | |
| GCCTCAACAAAGTTTGAGGG+TGG | + | chr5_1:45341528-45341547 | Msa0732690:CDS | 50.0% | |
| CTGCCGGAACCTAAGTAATG+AGG | - | chr5_1:45342396-45342415 | None:intergenic | 50.0% | |
| TACTTAGGTTCCGGCAGAAG+AGG | + | chr5_1:45342399-45342418 | Msa0732690:CDS | 50.0% | |
| ! | CTGTTAGCAAGCTGGTCTAC+GGG | + | chr5_1:45342687-45342706 | Msa0732690:intron | 50.0% |
| CCAGCACATATGGTCTGTCT+TGG | - | chr5_1:45342843-45342862 | None:intergenic | 50.0% | |
| CCAAGACAGACCATATGTGC+TGG | + | chr5_1:45342840-45342859 | Msa0732690:intron | 50.0% | |
| !! | GCCCTTTTGATTGGTGTCCT+TGG | + | chr5_1:45343185-45343204 | Msa0732690:intron | 50.0% |
| !! | TTTTTAGTCCGTGCCCTACG+AGG | - | chr5_1:45343390-45343409 | None:intergenic | 50.0% |
| TACAGACCAGGATTCTAGCC+AGG | + | chr5_1:45343950-45343969 | Msa0732690:CDS | 50.0% | |
| !! | TTTCTGATGGACTGGCATCC+TGG | - | chr5_1:45343971-45343990 | None:intergenic | 50.0% |
| CAAAGTGACCTTGGACCAGA+TGG | - | chr5_1:45344231-45344250 | None:intergenic | 50.0% | |
| ! | GCAATGCTTGTGGGCTTTTC+TGG | + | chr5_1:45344250-45344269 | Msa0732690:CDS | 50.0% |
| ! | GTGGGCTTTTCTGGGCAAAT+AGG | + | chr5_1:45344259-45344278 | Msa0732690:CDS | 50.0% |
| AGGGTAGGTGTTCTCTCCAA+AGG | + | chr5_1:45344279-45344298 | Msa0732690:intron | 50.0% | |
| TGCAATGAAGGAACCGGGAA+GGG | - | chr5_1:45344404-45344423 | None:intergenic | 50.0% | |
| ATGCAATGAAGGAACCGGGA+AGG | - | chr5_1:45344405-45344424 | None:intergenic | 50.0% | |
| TCCCGGTTCCTTCATTGCAT+TGG | + | chr5_1:45344405-45344424 | Msa0732690:intron | 50.0% | |
| ! | CCCCCTTTTGACAATGGTCT+TGG | + | chr5_1:45345002-45345021 | Msa0732690:intron | 50.0% |
| ACCACAGTACCAATCACCGC+CGG | + | chr5_1:45341018-45341037 | Msa0732690:CDS | 55.0% | |
| ! | GCCGTAAACAGCATCGGAGT+TGG | - | chr5_1:45341127-45341146 | None:intergenic | 55.0% |
| GCCGTTGCCGTAAACAGCAT+CGG | - | chr5_1:45341133-45341152 | None:intergenic | 55.0% | |
| ! | GATGCTGTTTACGGCAACGG+CGG | + | chr5_1:45341132-45341151 | Msa0732690:CDS | 55.0% |
| ! | CAGCTTACGCTGTCGTTTCG+TGG | + | chr5_1:45341198-45341217 | Msa0732690:CDS | 55.0% |
| ACCGCATTCACACCAGCATC+AGG | - | chr5_1:45341508-45341527 | None:intergenic | 55.0% | |
| GGCTTGGAGTGAGAGAGTTC+AGG | + | chr5_1:45341764-45341783 | Msa0732690:intron | 55.0% | |
| GGAGTGAGAGAGTTCAGGAG+TGG | + | chr5_1:45341769-45341788 | Msa0732690:intron | 55.0% | |
| CTATCATGGGCAGCCGTATC+CGG | - | chr5_1:45342018-45342037 | None:intergenic | 55.0% | |
| ACGACACGGATACGGCGATA+TGG | - | chr5_1:45342229-45342248 | None:intergenic | 55.0% | |
| TCCTGCTGACAAGTCCTCGT+AGG | + | chr5_1:45343373-45343392 | Msa0732690:intron | 55.0% | |
| CCTGCTGACAAGTCCTCGTA+GGG | + | chr5_1:45343374-45343393 | Msa0732690:intron | 55.0% | |
| TGACAAGTCCTCGTAGGGCA+CGG | + | chr5_1:45343379-45343398 | Msa0732690:intron | 55.0% | |
| TGGCATCCTGGCTAGAATCC+TGG | - | chr5_1:45343959-45343978 | None:intergenic | 55.0% | |
| ACACTCATGCATGCCCTTCC+CGG | + | chr5_1:45344388-45344407 | Msa0732690:intron | 55.0% | |
| ! | GAGGGGGAAGAGAGTGCAGA+AGG | - | chr5_1:45340869-45340888 | None:intergenic | 60.0% |
| CCCTACGAGGACTTGTCAGC+AGG | - | chr5_1:45343377-45343396 | None:intergenic | 60.0% | |
| ATGGCCCTCGCCGCATCATT+GGG | - | chr5_1:45344212-45344231 | None:intergenic | 60.0% | |
| GCCGGCGGTGATTGGTACTG+TGG | - | chr5_1:45341022-45341041 | None:intergenic | 65.0% | |
| TCGCTTTCGCCGGCGGTGAT+TGG | - | chr5_1:45341030-45341049 | None:intergenic | 65.0% | |
| ! | GGAACCGTCGTCGCTTTCGC+CGG | - | chr5_1:45341040-45341059 | None:intergenic | 65.0% |
| GGCGAAAGCGACGACGGTTC+CGG | + | chr5_1:45341039-45341058 | Msa0732690:CDS | 65.0% | |
| !! | TTGAGCGTCGATGCCGGCGT+CGG | - | chr5_1:45341067-45341086 | None:intergenic | 65.0% |
| TCGACCCCAATGATGCGGCG+AGG | + | chr5_1:45344204-45344223 | Msa0732690:CDS | 65.0% | |
| CGACCCCAATGATGCGGCGA+GGG | + | chr5_1:45344205-45344224 | Msa0732690:CDS | 65.0% | |
| TGGCCCTCGCCGCATCATTG+GGG | - | chr5_1:45344211-45344230 | None:intergenic | 65.0% | |
| GATGGCCCTCGCCGCATCAT+TGG | - | chr5_1:45344213-45344232 | None:intergenic | 65.0% | |
| ATGATGCGGCGAGGGCCATC+TGG | + | chr5_1:45344213-45344232 | Msa0732690:CDS | 65.0% | |
| ACCGCCGGCGAAAGCGACGA+CGG | + | chr5_1:45341033-45341052 | Msa0732690:CDS | 70.0% | |
| ! | ACCGTCGTCGCTTTCGCCGG+CGG | - | chr5_1:45341037-45341056 | None:intergenic | 70.0% |
| !! | TGAGCGTCGATGCCGGCGTC+GGG | - | chr5_1:45341066-45341085 | None:intergenic | 70.0% |
| GGCGAGGGCCATCTGGTCCA+AGG | + | chr5_1:45344220-45344239 | Msa0732690:CDS | 70.0% | |
| GACGGTTCCGGTCCCGACGC+CGG | + | chr5_1:45341051-45341070 | Msa0732690:CDS | 75.0% | |
| ! | GTCGATGCCGGCGTCGGGAC+CGG | - | chr5_1:45341061-45341080 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 45340853 | 45345732 | 45340853 | ID=Msa0732690;Name=Msa0732690 |
| chr5_1 | mRNA | 45340853 | 45345732 | 45340853 | ID=Msa0732690-mRNA-1;Parent=Msa0732690;Name=Msa0732690-mRNA-1;_AED=0.04;_eAED=0.04;_QI=126|1|1|1|1|1|7|290|287 |
| chr5_1 | exon | 45340853 | 45341257 | 45340853 | ID=Msa0732690-mRNA-1:exon:12925;Parent=Msa0732690-mRNA-1 |
| chr5_1 | exon | 45341466 | 45341549 | 45341466 | ID=Msa0732690-mRNA-1:exon:12926;Parent=Msa0732690-mRNA-1 |
| chr5_1 | exon | 45342347 | 45342480 | 45342347 | ID=Msa0732690-mRNA-1:exon:12927;Parent=Msa0732690-mRNA-1 |
| chr5_1 | exon | 45343887 | 45343994 | 45343887 | ID=Msa0732690-mRNA-1:exon:12928;Parent=Msa0732690-mRNA-1 |
| chr5_1 | exon | 45344176 | 45344281 | 45344176 | ID=Msa0732690-mRNA-1:exon:12929;Parent=Msa0732690-mRNA-1 |
| chr5_1 | exon | 45345037 | 45345096 | 45345037 | ID=Msa0732690-mRNA-1:exon:12930;Parent=Msa0732690-mRNA-1 |
| chr5_1 | exon | 45345350 | 45345732 | 45345350 | ID=Msa0732690-mRNA-1:exon:12931;Parent=Msa0732690-mRNA-1 |
| chr5_1 | five_prime_UTR | 45340853 | 45340978 | 45340853 | ID=Msa0732690-mRNA-1:five_prime_utr;Parent=Msa0732690-mRNA-1 |
| chr5_1 | CDS | 45340979 | 45341257 | 45340979 | ID=Msa0732690-mRNA-1:cds;Parent=Msa0732690-mRNA-1 |
| chr5_1 | CDS | 45341466 | 45341549 | 45341466 | ID=Msa0732690-mRNA-1:cds;Parent=Msa0732690-mRNA-1 |
| chr5_1 | CDS | 45342347 | 45342480 | 45342347 | ID=Msa0732690-mRNA-1:cds;Parent=Msa0732690-mRNA-1 |
| chr5_1 | CDS | 45343887 | 45343994 | 45343887 | ID=Msa0732690-mRNA-1:cds;Parent=Msa0732690-mRNA-1 |
| chr5_1 | CDS | 45344176 | 45344281 | 45344176 | ID=Msa0732690-mRNA-1:cds;Parent=Msa0732690-mRNA-1 |
| chr5_1 | CDS | 45345037 | 45345096 | 45345037 | ID=Msa0732690-mRNA-1:cds;Parent=Msa0732690-mRNA-1 |
| chr5_1 | CDS | 45345350 | 45345442 | 45345350 | ID=Msa0732690-mRNA-1:cds;Parent=Msa0732690-mRNA-1 |
| chr5_1 | three_prime_UTR | 45345443 | 45345732 | 45345443 | ID=Msa0732690-mRNA-1:three_prime_utr;Parent=Msa0732690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
