AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0733780

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733780 MtrunA17_Chr5g0429341 97.561 410 10 0 1 410 1 410 0.0 822
Msa0733780 MtrunA17_Chr3g0120711 68.434 415 120 7 1 409 1 410 0.0 534
Msa0733780 MtrunA17_Chr2g0322941 50.833 120 57 1 1 120 40 157 2.81e-35 130
Msa0733780 MtrunA17_Chr1g0209071 49.138 116 55 2 1 115 1 113 4.61e-30 119
Msa0733780 MtrunA17_Chr7g0268691 49.505 101 50 1 5 105 20 119 3.71e-29 117
Msa0733780 MtrunA17_Chr7g0268691 54.902 51 23 0 344 394 319 369 2.63e-11 64.7
Msa0733780 MtrunA17_Chr2g0322951 49.495 99 42 2 309 404 50 143 1.72e-24 98.2
Msa0733780 MtrunA17_Chr7g0251781 41.509 106 56 1 5 104 5 110 2.16e-21 95.1
Msa0733780 MtrunA17_Chr7g0251781 67.347 49 16 0 349 397 337 385 1.28e-14 75.1
Msa0733780 MtrunA17_Chr1g0150471 44.048 84 47 0 4 87 5 88 7.81e-20 89.7
Msa0733780 MtrunA17_Chr1g0150471 41.463 82 39 1 313 394 224 296 6.89e-12 66.2
Msa0733780 MtrunA17_Chr3g0136701 43.333 90 51 0 4 93 5 94 4.22e-19 87.0
Msa0733780 MtrunA17_Chr3g0136701 54.902 51 23 0 350 400 229 279 1.79e-11 64.7
Msa0733780 MtrunA17_Chr4g0072871 43.333 90 51 0 4 93 21 110 1.09e-18 87.0
Msa0733780 MtrunA17_Chr4g0072871 61.702 47 18 0 352 398 297 343 2.39e-11 65.1
Msa0733780 MtrunA17_Chr7g0220721 42.857 91 52 0 5 95 26 116 1.88e-17 83.6
Msa0733780 MtrunA17_Chr4g0033641 35.417 96 53 1 1 87 1 96 4.99e-14 71.2
Msa0733780 MtrunA17_Chr4g0035651 36.082 97 52 1 1 87 1 97 1.55e-13 69.7
Msa0733780 MtrunA17_Chr3g0145061 30.769 195 103 8 1 182 1 176 1.68e-13 69.7
Msa0733780 MtrunA17_Chr1g0155811 32.990 97 55 1 1 87 1 97 3.51e-13 69.3
Msa0733780 MtrunA17_Chr3g0142221 31.633 98 56 1 1 87 1 98 3.05e-12 65.9
Msa0733780 MtrunA17_Chr2g0329511 33.333 96 55 1 1 87 1 96 7.38e-12 65.1
Msa0733780 MtrunA17_Chr5g0405151 36.905 84 45 1 1 76 1 84 1.69e-11 62.8
Msa0733780 MtrunA17_Chr2g0314671 33.333 96 55 1 1 87 1 96 2.27e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0733780 AT3G07650.3 52.830 424 132 12 1 409 1 371 2.22e-137 398
Msa0733780 AT3G07650.2 52.830 424 132 12 1 409 1 371 2.22e-137 398
Msa0733780 AT3G07650.4 52.830 424 132 12 1 409 1 371 2.22e-137 398
Msa0733780 AT3G07650.1 52.830 424 132 12 1 409 1 371 2.22e-137 398
Msa0733780 AT5G48250.1 52.471 425 133 13 1 409 1 372 2.26e-135 393
Msa0733780 AT4G15250.1 54.717 106 46 1 1 106 1 104 3.76e-35 132
Msa0733780 AT4G15250.1 54.737 95 42 1 309 403 233 326 1.99e-20 92.0
Msa0733780 AT2G33500.1 49.020 102 52 0 5 106 12 113 2.70e-33 129
Msa0733780 AT2G33500.1 70.455 44 13 0 352 395 356 399 3.21e-13 71.2
Msa0733780 AT2G33500.2 49.020 102 52 0 5 106 12 113 2.79e-33 129
Msa0733780 AT2G33500.2 70.455 44 13 0 352 395 355 398 3.23e-13 71.2
Msa0733780 AT3G21880.1 50.000 116 56 1 1 116 1 114 9.42e-33 127
Msa0733780 AT3G21880.1 48.739 119 49 4 292 407 252 361 7.21e-25 105
Msa0733780 AT3G21880.3 50.000 116 56 1 1 116 5 118 1.07e-32 127
Msa0733780 AT3G21880.3 48.739 119 49 4 292 407 256 365 8.07e-25 105
Msa0733780 AT3G21880.2 50.000 116 56 1 1 116 5 118 1.07e-32 127
Msa0733780 AT3G21880.2 48.739 119 49 4 292 407 256 365 8.07e-25 105
Msa0733780 AT1G28050.1 41.935 124 70 1 5 128 9 130 1.80e-31 124
Msa0733780 AT1G28050.1 30.168 179 110 4 224 397 261 429 4.16e-13 70.9
Msa0733780 AT1G68190.1 46.296 108 56 1 1 108 10 115 1.67e-28 115
Msa0733780 AT1G68190.3 46.296 108 56 1 1 108 10 115 1.67e-28 115
Msa0733780 AT1G68190.2 46.296 108 56 1 1 108 39 144 2.38e-28 115
Msa0733780 AT2G47890.2 49.020 102 50 1 4 105 12 111 1.93e-27 109
Msa0733780 AT2G47890.3 49.020 102 50 1 4 105 12 111 5.45e-27 109
Msa0733780 AT2G47890.1 49.020 102 50 1 4 105 12 111 6.42e-27 110
Msa0733780 AT2G47890.1 51.923 52 25 0 346 397 280 331 7.60e-11 63.5
Msa0733780 AT5G57660.1 27.543 403 197 12 5 402 22 334 1.92e-23 100
Msa0733780 AT5G24930.1 45.556 90 49 0 4 93 5 94 1.19e-20 93.2
Msa0733780 AT5G24930.1 60.784 51 20 0 348 398 290 340 1.75e-12 68.6
Msa0733780 AT2G24790.2 43.333 90 51 0 4 93 7 96 3.28e-19 86.3
Msa0733780 AT2G24790.1 43.333 90 51 0 4 93 7 96 3.50e-19 87.8
Msa0733780 AT2G24790.1 50.847 59 29 0 344 402 220 278 9.13e-12 65.9
Msa0733780 AT5G15840.1 45.055 91 50 0 5 95 20 110 1.03e-17 84.7
Msa0733780 AT5G15840.2 45.055 91 50 0 5 95 20 110 1.61e-17 82.4
Msa0733780 AT5G15850.1 45.349 86 47 0 5 90 12 97 4.98e-17 82.4
Msa0733780 AT5G15850.1 51.613 62 27 2 333 394 269 327 5.52e-11 63.9
Msa0733780 AT3G02380.1 38.835 103 57 1 5 101 16 118 1.17e-15 78.2
Msa0733780 AT3G02380.1 66.667 42 14 0 353 394 278 319 2.26e-11 65.1
Msa0733780 AT1G06040.2 35.417 96 53 1 1 87 1 96 1.41e-13 68.9
Msa0733780 AT1G06040.1 35.417 96 53 1 1 87 1 96 2.19e-13 70.1
Msa0733780 AT2G31380.1 34.375 96 54 1 1 87 1 96 2.45e-13 69.7
Msa0733780 AT1G78600.1 31.250 96 57 1 1 87 1 96 4.69e-12 67.0
Msa0733780 AT1G75540.1 33.333 99 54 1 1 87 1 99 4.95e-12 67.0
Msa0733780 AT1G78600.2 31.250 96 57 1 1 87 1 96 5.17e-12 67.0
Msa0733780 AT4G38960.1 26.286 175 107 4 1 166 1 162 2.64e-11 62.8
Msa0733780 AT4G38960.6 26.286 175 107 4 1 166 1 162 2.64e-11 62.8
Msa0733780 AT2G21320.1 36.842 95 50 2 1 87 1 93 8.33e-11 60.8

Find 140 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGACACACTCTTGCTTTC+TGG 0.079702 5_1:-47220205 None:intergenic
AATAGAACAATTACCCTTTA+TGG 0.103451 5_1:-47218798 None:intergenic
CTTTCTCTTGAAGAAATTAT+AGG 0.213186 5_1:-47224013 None:intergenic
GTTAGATTATAGATTAGATA+TGG 0.249687 5_1:-47218465 None:intergenic
AAAGATAGAAGAGGAACAAT+AGG 0.253438 5_1:+47218534 Msa0733780:five_prime_UTR
AGAAGGGATGTCTGAGAAAA+AGG 0.263603 5_1:-47220107 None:intergenic
GAAGCTTTGCTGGTATTGTT+TGG 0.271507 5_1:+47224494 Msa0733780:three_prime_UTR
CAACCTATCATCATGATAAA+TGG 0.285318 5_1:-47224457 None:intergenic
GAGAAGAATAATGCAAATTA+TGG 0.299272 5_1:-47218419 None:intergenic
CTTCCGAGCTTTCCTCAATA+TGG 0.307907 5_1:+47220083 Msa0733780:CDS
AAAGTCATATTTCAATGAAT+TGG 0.314071 5_1:+47224047 Msa0733780:three_prime_UTR
GATGCAGCATTGCTGCATTC+TGG 0.314142 5_1:-47222349 None:intergenic
AGTGTAAACTCAGCAGCTTC+TGG 0.321377 5_1:-47223877 None:intergenic
GATGAAAATTGTACATTTGA+AGG 0.322960 5_1:+47224415 Msa0733780:three_prime_UTR
AAGCTTTGCTGGTATTGTTT+GGG 0.327954 5_1:+47224495 Msa0733780:three_prime_UTR
CAATCAATCAATTGCTTCTC+TGG 0.329875 5_1:+47220049 Msa0733780:CDS
TTCTCACAGGGGAGCCTCCC+TGG 0.331546 5_1:+47222506 Msa0733780:CDS
CAATGCTGTCATGCGTTATA+AGG 0.336608 5_1:+47222573 Msa0733780:CDS
GATAAGGAAAAGTTCCATAA+AGG 0.345072 5_1:+47218784 Msa0733780:five_prime_UTR
TGTATTGCTAGAAGCTTTGC+TGG 0.346170 5_1:+47224484 Msa0733780:three_prime_UTR
TTTCAATGAATTGGCAGTAT+AGG 0.350787 5_1:+47224056 Msa0733780:three_prime_UTR
CTGGTTCAAAATACGGGGTT+TGG 0.355047 5_1:-47220302 None:intergenic
TACCTTAGGCATAAGTTCAT+TGG 0.357652 5_1:-47220338 None:intergenic
CTTTCCGTAAAATAAATAAC+TGG 0.358970 5_1:-47222403 None:intergenic
CACTTTGTCAGAACTGTGAT+TGG 0.369730 5_1:+47219984 Msa0733780:CDS
TTGCGGAGACCAGAGGTCTT+TGG 0.371869 5_1:+47219808 Msa0733780:CDS
ACAATTCATTGTCAGTCCTT+TGG 0.393417 5_1:+47224227 Msa0733780:three_prime_UTR
ATGCCATTTATCATGATGAT+AGG 0.395074 5_1:+47224454 Msa0733780:three_prime_UTR
TTGAAGGTTATGTATAGAAT+AGG 0.407082 5_1:+47224431 Msa0733780:three_prime_UTR
ATAAGGAAAAGTTCCATAAA+GGG 0.415471 5_1:+47218785 Msa0733780:five_prime_UTR
TTTCCCCAGCTTTGACGAAC+CGG 0.416476 5_1:-47223827 None:intergenic
CTTCCAAGCAAATACAAATC+TGG 0.419423 5_1:+47220247 Msa0733780:CDS
CAGCTTCTGGTTTGACTCAA+AGG 0.419857 5_1:-47223864 None:intergenic
TCATGAAGATTCTTAAGATA+AGG 0.425090 5_1:+47218768 Msa0733780:five_prime_UTR
CGGGCGCCTGGTTCAAAATA+CGG 0.425108 5_1:-47220309 None:intergenic
TTCTCAGACATCCCTTCTAC+GGG 0.425943 5_1:+47220112 Msa0733780:CDS
AAAGGCCGGTTCGTCAAAGC+TGG 0.426807 5_1:+47223822 Msa0733780:CDS
TGTTAGCTGACATCACGATT+TGG 0.430163 5_1:-47224117 None:intergenic
TTGCTTCTCTGGCTGTCCTT+CGG 0.430721 5_1:+47220060 Msa0733780:CDS
CATAAGTTCATTGGAAGATC+CGG 0.431154 5_1:-47220329 None:intergenic
TTTCTCAGACATCCCTTCTA+CGG 0.433778 5_1:+47220111 Msa0733780:CDS
CCAGAAAGCAAGAGTGTGTC+TGG 0.441871 5_1:+47220205 Msa0733780:CDS
GACACTTATCATGCCATCTC+TGG 0.444997 5_1:-47224322 None:intergenic
GGGCGCCTGGTTCAAAATAC+GGG 0.445144 5_1:-47220308 None:intergenic
AGCGAAGTGTGGTTTAAAGA+TGG 0.451015 5_1:+47219769 Msa0733780:exon
ACGGGGTTTGGCACTTGACT+CGG 0.451656 5_1:-47220290 None:intergenic
ATTCAAGGCTCATTGCTTGA+AGG 0.451875 5_1:-47224154 None:intergenic
TTGTCCTGCATAGATGTAGA+TGG 0.455283 5_1:+47224366 Msa0733780:three_prime_UTR
AGCAGATTGAATAGAATTCT+CGG 0.457491 5_1:-47222542 None:intergenic
CTGCTGTGTTTATGTTGAGA+TGG 0.458402 5_1:-47218502 None:intergenic
TTAGATTATAGATTAGATAT+GGG 0.459668 5_1:-47218464 None:intergenic
TAGTATATTCTTCTAAAGAA+TGG 0.459767 5_1:+47223946 Msa0733780:three_prime_UTR
AGAACAGTGACAACAGTGCC+AGG 0.462494 5_1:+47220176 Msa0733780:CDS
ACGCCAGATTTGTATTTGCT+TGG 0.463932 5_1:-47220250 None:intergenic
TTTGTATTTGCTTGGAAGAT+CGG 0.465452 5_1:-47220242 None:intergenic
TTGGATATCCTTCGCGGTGA+AGG 0.465523 5_1:-47224098 None:intergenic
GCAGATTGAATAGAATTCTC+GGG 0.465896 5_1:-47222541 None:intergenic
GTGTTTATGTTGAGATGGAT+TGG 0.472181 5_1:-47218497 None:intergenic
AGCTTCTGGTTTGACTCAAA+GGG 0.472965 5_1:-47223863 None:intergenic
CTCGGGGCAAGGAGGACACC+AGG 0.476613 5_1:-47222524 None:intergenic
ATGAATTGGCAGTATAGGCT+TGG 0.478583 5_1:+47224061 Msa0733780:three_prime_UTR
CATTGGAAGATCCGGGCGCC+TGG 0.483294 5_1:-47220321 None:intergenic
AGAAAGTAAGATATGCTTCT+CGG 0.490575 5_1:+47223769 Msa0733780:CDS
TAGTGCAGGAGCCTTTCTGC+TGG 0.494546 5_1:-47221367 None:intergenic
AAGATAGAAGAGGAACAATA+GGG 0.495271 5_1:+47218535 Msa0733780:five_prime_UTR
ATAAAAGGAATCAAAATTCA+AGG 0.496167 5_1:-47224169 None:intergenic
CGGGGTTTGGCACTTGACTC+GGG 0.498437 5_1:-47220289 None:intergenic
GATATGCTTCTCGGAAGGCT+AGG 0.500853 5_1:+47223778 Msa0733780:CDS
TAATTTCTTCAAGAGAAAGA+AGG 0.509289 5_1:+47224017 Msa0733780:three_prime_UTR
CTTGCTTTCTGGAGGAACCC+TGG 0.509409 5_1:-47220194 None:intergenic
TCGATCACACGACAAACATA+AGG 0.512174 5_1:-47219855 None:intergenic
TTGCCTCTTGTGTGTTGAAG+AGG 0.512520 5_1:-47220029 None:intergenic
TAGATTAGATATGGGAGGGT+TGG 0.513153 5_1:-47218456 None:intergenic
TTCAAGGCTCATTGCTTGAA+GGG 0.514032 5_1:-47224153 None:intergenic
TGATTTCAACATAGATGAGA+TGG 0.515486 5_1:+47221413 Msa0733780:CDS
ACTTCTTCAATGCTTCTCAC+AGG 0.517555 5_1:+47222493 Msa0733780:CDS
GCGAAGTGTGGTTTAAAGAT+GGG 0.523464 5_1:+47219770 Msa0733780:exon
CTCTTGTGTGTTGAAGAGGA+TGG 0.523560 5_1:-47220025 None:intergenic
TCAGGAAACGTGTGAAAGGC+CGG 0.525006 5_1:+47223808 Msa0733780:CDS
TTCTTTCCTTTCGTAGAACA+TGG 0.525351 5_1:-47223906 None:intergenic
TGTTAACGCCAGAAAATGAA+AGG 0.527986 5_1:-47222435 None:intergenic
TTCCAATGAACTTATGCCTA+AGG 0.528385 5_1:+47220336 Msa0733780:CDS
AACTCCATCTACATCTATGC+AGG 0.532431 5_1:-47224370 None:intergenic
ATAAGTTCATTGGAAGATCC+GGG 0.534550 5_1:-47220328 None:intergenic
GGCAGTACACCAAAGACCTC+TGG 0.535687 5_1:-47219817 None:intergenic
GGAAGGCTAGGGCTGATGTC+AGG 0.539027 5_1:+47223790 Msa0733780:CDS
ATATGCTTCTCGGAAGGCTA+GGG 0.540472 5_1:+47223779 Msa0733780:CDS
CTTCTTCAATGCTTCTCACA+GGG 0.540534 5_1:+47222494 Msa0733780:CDS
CACGATTTGGATATCCTTCG+CGG 0.541892 5_1:-47224104 None:intergenic
ATTATAGATTAGATATGGGA+GGG 0.544249 5_1:-47218460 None:intergenic
TGAATAGAATTCTCGGGGCA+AGG 0.546742 5_1:-47222535 None:intergenic
AACTGTGATTGGTCAGCTCA+TGG 0.551188 5_1:+47219995 Msa0733780:CDS
TATGAAGATGATAAGTTGCT+TGG 0.554825 5_1:+47221390 Msa0733780:CDS
CAGCATTGCTGCATTCTGGT+TGG 0.554970 5_1:-47222345 None:intergenic
GGCTCCTGCGTTAAATCAGA+CGG 0.557097 5_1:-47223992 None:intergenic
TGTGTCTGGTTCAGCTCAAG+TGG 0.560306 5_1:+47220219 Msa0733780:CDS
GATGTCAGGAAACGTGTGAA+AGG 0.562108 5_1:+47223804 Msa0733780:CDS
ATTGGCAGTATAGGCTTGGA+AGG 0.564149 5_1:+47224065 Msa0733780:three_prime_UTR
AAAGACATGTCTGCTAGTGC+TGG 0.564402 5_1:+47221534 Msa0733780:CDS
TCAACACACCTCACATATGC+AGG 0.564586 5_1:-47219950 None:intergenic
TTATCATCTTCATATAGTGC+AGG 0.566248 5_1:-47221381 None:intergenic
GGGCCATATTGAGGAAAGCT+CGG 0.567265 5_1:-47220086 None:intergenic
TCTGGCAGTTCTACATACAT+AGG 0.568257 5_1:-47224304 None:intergenic
TCAAGGCGCTGTTGCTGCTG+AGG 0.568931 5_1:+47221569 Msa0733780:CDS
GTTACTATGTCCCAGCAGAA+AGG 0.575589 5_1:+47221356 Msa0733780:intron
CAAACATAAGGAAGCAGCAT+CGG 0.579320 5_1:-47219843 None:intergenic
GATTATAGATTAGATATGGG+AGG 0.581205 5_1:-47218461 None:intergenic
GTATGTAGAACTGCCAGAGA+TGG 0.586112 5_1:+47224309 Msa0733780:three_prime_UTR
AAGGCCGGTTCGTCAAAGCT+GGG 0.589643 5_1:+47223823 Msa0733780:CDS
AGTGCAGGAGCCTTTCTGCT+GGG 0.591038 5_1:-47221366 None:intergenic
TCAAGGCTCATTGCTTGAAG+GGG 0.591989 5_1:-47224152 None:intergenic
GACACACTCTTGCTTTCTGG+AGG 0.592085 5_1:-47220202 None:intergenic
GTGTGTTGAAGAGGATGGAT+TGG 0.598104 5_1:-47220020 None:intergenic
AAGAGAGAGAAAGATAGAAG+AGG 0.606356 5_1:+47218525 Msa0733780:five_prime_UTR
CTCAGACATCCCTTCTACGG+GGG 0.607083 5_1:+47220114 Msa0733780:CDS
AGATATGGGAGGGTTGGTGT+AGG 0.607336 5_1:-47218450 None:intergenic
TTAAAGGAGCAAGCGAAGTG+TGG 0.607491 5_1:+47219758 Msa0733780:intron
ACGCGCATCCTTCACCGCGA+AGG 0.607907 5_1:+47224090 Msa0733780:three_prime_UTR
AGTAAGATATGCTTCTCGGA+AGG 0.623856 5_1:+47223773 Msa0733780:CDS
CATCCTCTTCAACACACAAG+AGG 0.627085 5_1:+47220026 Msa0733780:CDS
GTTAACAAAGATACTAGTGC+TGG 0.627470 5_1:+47222451 Msa0733780:CDS
TCGGGGCAAGGAGGACACCA+GGG 0.628096 5_1:-47222523 None:intergenic
CAGATTGAATAGAATTCTCG+GGG 0.628312 5_1:-47222540 None:intergenic
GAGGAAAGCTCGGAAGCCGA+AGG 0.632758 5_1:-47220076 None:intergenic
GGCGCCTGGTTCAAAATACG+GGG 0.642690 5_1:-47220307 None:intergenic
GCTGGTGATTCAAATTGTCA+AGG 0.642760 5_1:+47221552 Msa0733780:CDS
CAAGAACACTTGTATGCGAG+AGG 0.643376 5_1:+47219915 Msa0733780:CDS
TTCTTCAATGCTTCTCACAG+GGG 0.656918 5_1:+47222495 Msa0733780:CDS
AGGCCGGTTCGTCAAAGCTG+GGG 0.660571 5_1:+47223824 Msa0733780:CDS
GGGCAAGGAGGACACCAGGG+AGG 0.662427 5_1:-47222520 None:intergenic
GAACAGTGACAACAGTGCCA+GGG 0.668906 5_1:+47220177 Msa0733780:CDS
TTGGCAGTATAGGCTTGGAA+GGG 0.669630 5_1:+47224066 Msa0733780:three_prime_UTR
GAAGCATGTGAACATAAACT+CGG 0.677628 5_1:+47220136 Msa0733780:CDS
ATGTCAGCTAACATGTCACA+AGG 0.678424 5_1:+47224127 Msa0733780:three_prime_UTR
ATAAGGAAGCAGCATCGGAG+CGG 0.698842 5_1:-47219838 None:intergenic
TCTCAGACATCCCTTCTACG+GGG 0.707439 5_1:+47220113 Msa0733780:CDS
ATTTACAACCTGCATATGTG+AGG 0.728365 5_1:+47219942 Msa0733780:CDS
ATAGAATTCTCGGGGCAAGG+AGG 0.730840 5_1:-47222532 None:intergenic
GCTGGTGACTATCAAGAGTG+TGG 0.743394 5_1:+47222469 Msa0733780:CDS
CAAACCGTCTGATTTAACGC+AGG 0.745925 5_1:+47223988 Msa0733780:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATATGTTAATTGTTTAA+TGG + chr5_1:47220600-47220619 Msa0733780:intron 10.0%
!! TAAATGTCTTTATTAAAAAA+CGG - chr5_1:47222846-47222865 None:intergenic 10.0%
!! TTAGATTATAGATTAGATAT+GGG - chr5_1:47218467-47218486 None:intergenic 15.0%
!!! ATTGTGGTTATATTTTTATT+TGG + chr5_1:47218912-47218931 Msa0733780:intron 15.0%
!! TTAATGTTATTGTTTGATAT+TGG + chr5_1:47219344-47219363 Msa0733780:intron 15.0%
!!! TGGAATTGTTATTTAATTAA+AGG + chr5_1:47219742-47219761 Msa0733780:intron 15.0%
!!! ACATACTTTTTTAATCAAAT+TGG - chr5_1:47220834-47220853 None:intergenic 15.0%
!! AAATAAAATAATACTACTTG+TGG + chr5_1:47223203-47223222 Msa0733780:intron 15.0%
!! GTTAGATTATAGATTAGATA+TGG - chr5_1:47218468-47218487 None:intergenic 20.0%
!!! ACTTTTTTCTACTATAATGA+TGG + chr5_1:47218941-47218960 Msa0733780:intron 20.0%
!!! ACAACTAATTAATCATTTTC+AGG - chr5_1:47219009-47219028 None:intergenic 20.0%
!! ATGATAAATTAGTACATGTT+TGG - chr5_1:47219184-47219203 None:intergenic 20.0%
!! TAATAATTTGAGAAAATGGA+AGG + chr5_1:47219495-47219514 Msa0733780:intron 20.0%
!! AATAATTTGAGAAAATGGAA+GGG + chr5_1:47219496-47219515 Msa0733780:intron 20.0%
!!! CAGCTTCAATATTTTATTTT+AGG + chr5_1:47219679-47219698 Msa0733780:intron 20.0%
!! TTATCTATAACTTAAGATAG+AGG - chr5_1:47220495-47220514 None:intergenic 20.0%
!! TGAATTAGTTACTGTATTTA+TGG + chr5_1:47220925-47220944 Msa0733780:intron 20.0%
!! AAATGAATATAAAGGACTTA+AGG - chr5_1:47222093-47222112 None:intergenic 20.0%
!! AAACCTTCAAATGAATATAA+AGG - chr5_1:47222101-47222120 None:intergenic 20.0%
!! AATACAAAAGCTATAAAACT+AGG - chr5_1:47222251-47222270 None:intergenic 20.0%
!!! TATCTAAACTTCTGTTTTTA+GGG + chr5_1:47222295-47222314 Msa0733780:intron 20.0%
!!! TAATAAAGACATTTAAAGCT+AGG + chr5_1:47222851-47222870 Msa0733780:intron 20.0%
!!! GAAAGAATAAGAGATTTTTA+AGG - chr5_1:47222986-47223005 None:intergenic 20.0%
!!! TATTTATAGTTTGCTTTTGT+TGG + chr5_1:47223009-47223028 Msa0733780:intron 20.0%
!!! TGCAACTACTTTAAAAATAA+GGG - chr5_1:47223510-47223529 None:intergenic 20.0%
!!! TTGCAACTACTTTAAAAATA+AGG - chr5_1:47223511-47223530 None:intergenic 20.0%
!! TTAAAGTAGTTGCAAATATA+TGG + chr5_1:47223516-47223535 Msa0733780:intron 20.0%
!!! TGCTATTTTGCATTTAAAAT+TGG + chr5_1:47223583-47223602 Msa0733780:intron 20.0%
!!! TAGTATATTCTTCTAAAGAA+TGG + chr5_1:47223946-47223965 Msa0733780:three_prime_UTR 20.0%
!! AAAGTCATATTTCAATGAAT+TGG + chr5_1:47224047-47224066 Msa0733780:three_prime_UTR 20.0%
!! ATAAAAGGAATCAAAATTCA+AGG - chr5_1:47224172-47224191 None:intergenic 20.0%
! GAGAAGAATAATGCAAATTA+TGG - chr5_1:47218422-47218441 None:intergenic 25.0%
! ATTATAGATTAGATATGGGA+GGG - chr5_1:47218463-47218482 None:intergenic 25.0%
! TACAAGATCTATAAGGAAAA+GGG - chr5_1:47218661-47218680 None:intergenic 25.0%
! TCATGAAGATTCTTAAGATA+AGG + chr5_1:47218768-47218787 Msa0733780:five_prime_UTR 25.0%
! ATAAGGAAAAGTTCCATAAA+GGG + chr5_1:47218785-47218804 Msa0733780:five_prime_UTR 25.0%
! AATAGAACAATTACCCTTTA+TGG - chr5_1:47218801-47218820 None:intergenic 25.0%
! TTGATGTTGTAATGAAATTG+TGG + chr5_1:47218896-47218915 Msa0733780:intron 25.0%
!!! GTGGTTATATTTTTATTTGG+TGG + chr5_1:47218915-47218934 Msa0733780:intron 25.0%
!!! GTTATATTTTTATTTGGTGG+TGG + chr5_1:47218918-47218937 Msa0733780:intron 25.0%
!!! TGGAAATGCATTTTTATTTG+AGG + chr5_1:47218961-47218980 Msa0733780:intron 25.0%
! TAGAAAGAATCATATGCTAT+TGG + chr5_1:47219211-47219230 Msa0733780:intron 25.0%
! GGTATGTTATTGAGAATTAA+AGG - chr5_1:47219269-47219288 None:intergenic 25.0%
!! ATGAATTTTTATGCATCTCT+AGG - chr5_1:47219290-47219309 None:intergenic 25.0%
!! AAGAGACATCTCTAAAAAAA+GGG - chr5_1:47219325-47219344 None:intergenic 25.0%
!! AAAGAGACATCTCTAAAAAA+AGG - chr5_1:47219326-47219345 None:intergenic 25.0%
! AACTAGTAATTTATGGAACT+GGG - chr5_1:47219393-47219412 None:intergenic 25.0%
! CTGGTAATAATTTGAGAAAA+TGG + chr5_1:47219491-47219510 Msa0733780:intron 25.0%
! AAGCTATTAATTAGATGTGA+TGG + chr5_1:47220520-47220539 Msa0733780:intron 25.0%
!! TTCTAGTCAAATGATTCTTT+TGG + chr5_1:47220647-47220666 Msa0733780:intron 25.0%
! CATTCATATCAATTGCATAA+TGG - chr5_1:47220896-47220915 None:intergenic 25.0%
! CATGAGAGATTAAATAAGAA+AGG - chr5_1:47221325-47221344 None:intergenic 25.0%
!! TTTTGAACTTGAGAACTATA+CGG + chr5_1:47221437-47221456 Msa0733780:CDS 25.0%
!!! TCTGAAGAGTTTTTTGAAAA+TGG + chr5_1:47221486-47221505 Msa0733780:CDS 25.0%
! CCAAAATTATAGCTAACAAA+GGG - chr5_1:47221611-47221630 None:intergenic 25.0%
!! TATTAAGTGTTGTCAAATAG+TGG + chr5_1:47221833-47221852 Msa0733780:intron 25.0%
! AGTCCTTTATATTCATTTGA+AGG + chr5_1:47222095-47222114 Msa0733780:intron 25.0%
!!! GTATCTAAACTTCTGTTTTT+AGG + chr5_1:47222294-47222313 Msa0733780:intron 25.0%
!!! ATCTAAACTTCTGTTTTTAG+GGG + chr5_1:47222296-47222315 Msa0733780:intron 25.0%
! GATACTATTTACATATCCAA+TGG + chr5_1:47222631-47222650 Msa0733780:intron 25.0%
! TAAAATTATATCAACGCCAT+TGG - chr5_1:47222650-47222669 None:intergenic 25.0%
!! TAGGAATGTGTTATTATTCA+TGG - chr5_1:47222802-47222821 None:intergenic 25.0%
! TCTCTATTGATCTTATTCTT+AGG + chr5_1:47222949-47222968 Msa0733780:intron 25.0%
!!! AAGAGATTTTTAAGGTAGTT+TGG - chr5_1:47222978-47222997 None:intergenic 25.0%
! AATAATACTACTTGTGGAAA+TGG + chr5_1:47223209-47223228 Msa0733780:intron 25.0%
!!! AAAGGTATTAAATATTGCAC+TGG - chr5_1:47223476-47223495 None:intergenic 25.0%
! TATTTAATACCTTTCTCCAA+TGG + chr5_1:47223482-47223501 Msa0733780:intron 25.0%
!!! TTTAAAAATAAGGGTACCAT+TGG - chr5_1:47223501-47223520 None:intergenic 25.0%
! TTACTTATAATCTCAAAGCT+TGG + chr5_1:47223694-47223713 Msa0733780:intron 25.0%
! CTTTCTCTTGAAGAAATTAT+AGG - chr5_1:47224016-47224035 None:intergenic 25.0%
! TAATTTCTTCAAGAGAAAGA+AGG + chr5_1:47224017-47224036 Msa0733780:three_prime_UTR 25.0%
!!! GAATTTTGATTCCTTTTATG+TGG + chr5_1:47224173-47224192 Msa0733780:three_prime_UTR 25.0%
! GATGAAAATTGTACATTTGA+AGG + chr5_1:47224415-47224434 Msa0733780:three_prime_UTR 25.0%
! TTGAAGGTTATGTATAGAAT+AGG + chr5_1:47224431-47224450 Msa0733780:three_prime_UTR 25.0%
GATTATAGATTAGATATGGG+AGG - chr5_1:47218464-47218483 None:intergenic 30.0%
AAAGATAGAAGAGGAACAAT+AGG + chr5_1:47218534-47218553 Msa0733780:five_prime_UTR 30.0%
AAGATAGAAGAGGAACAATA+GGG + chr5_1:47218535-47218554 Msa0733780:five_prime_UTR 30.0%
GTACAAGATCTATAAGGAAA+AGG - chr5_1:47218662-47218681 None:intergenic 30.0%
GATAAGGAAAAGTTCCATAA+AGG + chr5_1:47218784-47218803 Msa0733780:five_prime_UTR 30.0%
ACAGACAAAAAAAGTCAGAA+AGG - chr5_1:47218826-47218845 None:intergenic 30.0%
TGTCTTAATTAGTGCATGTT+TGG + chr5_1:47219095-47219114 Msa0733780:intron 30.0%
TGAGTTTGACAAAATTACTG+TGG + chr5_1:47219126-47219145 Msa0733780:intron 30.0%
GAACTAGTAATTTATGGAAC+TGG - chr5_1:47219394-47219413 None:intergenic 30.0%
GTTCCATAAATTACTAGTTC+AGG + chr5_1:47219394-47219413 Msa0733780:intron 30.0%
TTGCCTGAACTAGTAATTTA+TGG - chr5_1:47219400-47219419 None:intergenic 30.0%
AAATAACTGATATACGCATG+TGG - chr5_1:47219533-47219552 None:intergenic 30.0%
GTTAACTTATTATTCTCCCT+TGG + chr5_1:47219578-47219597 Msa0733780:intron 30.0%
AATATTGAAGCTGAACTATG+TGG - chr5_1:47219672-47219691 None:intergenic 30.0%
TTTGTATTTGCTTGGAAGAT+CGG - chr5_1:47220245-47220264 None:intergenic 30.0%
AAATCATGAAGCTATACCTT+AGG - chr5_1:47220355-47220374 None:intergenic 30.0%
TTCTCTGAATGAATTGTTTG+TGG + chr5_1:47220443-47220462 Msa0733780:intron 30.0%
! GTTTGTGGAAATTTGTTTGA+CGG + chr5_1:47220458-47220477 Msa0733780:intron 30.0%
! TAGTCAAATGATTCTTTTGG+CGG + chr5_1:47220650-47220669 Msa0733780:intron 30.0%
TACAGACACGAAACAATAAA+GGG - chr5_1:47220692-47220711 None:intergenic 30.0%
ATACAGACACGAAACAATAA+AGG - chr5_1:47220693-47220712 None:intergenic 30.0%
CAATTGATATGAATGTCGTT+AGG + chr5_1:47220901-47220920 Msa0733780:intron 30.0%
TAGGGAAATGAAATGTTAAG+TGG + chr5_1:47221051-47221070 Msa0733780:intron 30.0%
ATACATGTACATAGGTTTCA+AGG - chr5_1:47221101-47221120 None:intergenic 30.0%
GAACAGTTATACATGTACAT+AGG - chr5_1:47221109-47221128 None:intergenic 30.0%
TGTACATGTATAACTGTTCT+TGG + chr5_1:47221110-47221129 Msa0733780:intron 30.0%
GTACATGTATAACTGTTCTT+GGG + chr5_1:47221111-47221130 Msa0733780:intron 30.0%
TTTAGTGAAATGAGTTACAC+AGG + chr5_1:47221294-47221313 Msa0733780:intron 30.0%
TTATCATCTTCATATAGTGC+AGG - chr5_1:47221384-47221403 None:intergenic 30.0%
TATGAAGATGATAAGTTGCT+TGG + chr5_1:47221390-47221409 Msa0733780:CDS 30.0%
TGATTTCAACATAGATGAGA+TGG + chr5_1:47221413-47221432 Msa0733780:CDS 30.0%
TTTCAAAAAACTCTTCAGAG+TGG - chr5_1:47221485-47221504 None:intergenic 30.0%
!!! GAAGAGTTTTTTGAAAATGG+TGG + chr5_1:47221489-47221508 Msa0733780:CDS 30.0%
! CCCTTTGTTAGCTATAATTT+TGG + chr5_1:47221608-47221627 Msa0733780:intron 30.0%
GCCAAAATTATAGCTAACAA+AGG - chr5_1:47221612-47221631 None:intergenic 30.0%
AAACTTGAACTAATTGCTAC+TGG + chr5_1:47221730-47221749 Msa0733780:intron 30.0%
! AGAGAACATTTAGTTTCCTT+TGG + chr5_1:47222221-47222240 Msa0733780:intron 30.0%
! GAGAACATTTAGTTTCCTTT+GGG + chr5_1:47222222-47222241 Msa0733780:intron 30.0%
! AGAACATTTAGTTTCCTTTG+GGG + chr5_1:47222223-47222242 Msa0733780:intron 30.0%
! CAATCAAACCTTTCATTTTC+TGG + chr5_1:47222427-47222446 Msa0733780:CDS 30.0%
AGCAGATTGAATAGAATTCT+CGG - chr5_1:47222545-47222564 None:intergenic 30.0%
! CGTTGATATAATTTTACCTG+TGG + chr5_1:47222654-47222673 Msa0733780:intron 30.0%
!! ATCTGCTCATGTTTTTGTTA+TGG + chr5_1:47222703-47222722 Msa0733780:intron 30.0%
TGGTGTAAAACAATGAGAAT+AGG - chr5_1:47222782-47222801 None:intergenic 30.0%
!! TTTGATAGAGTTGATAGAGT+AGG - chr5_1:47222821-47222840 None:intergenic 30.0%
! TAAAGCTAGGTCCATTTTAA+TGG + chr5_1:47222864-47222883 Msa0733780:intron 30.0%
CATCTGGAAAACCATTAAAA+TGG - chr5_1:47222878-47222897 None:intergenic 30.0%
! TTCACAAAGTGTTATGGTAA+TGG - chr5_1:47223052-47223071 None:intergenic 30.0%
! TGGATTAAAAAGGTATAGCA+TGG - chr5_1:47223112-47223131 None:intergenic 30.0%
! CTGAAAACTGTGGATTAAAA+AGG - chr5_1:47223122-47223141 None:intergenic 30.0%
TTCAGTTCACTGAAATGATT+AGG + chr5_1:47223137-47223156 Msa0733780:intron 30.0%
GCGGTAGTAATAAATAGAAT+AGG + chr5_1:47223159-47223178 Msa0733780:intron 30.0%
TACTATATTCTATCCCTCTT+TGG - chr5_1:47223347-47223366 None:intergenic 30.0%
AGAGGGATAGAATATAGTAT+TGG + chr5_1:47223348-47223367 Msa0733780:intron 30.0%
GTAATAGTTATTCTTCTCAG+TGG - chr5_1:47223386-47223405 None:intergenic 30.0%
CTTTCTTATCAAACCTGAAA+TGG - chr5_1:47223755-47223774 None:intergenic 30.0%
AGAAAGTAAGATATGCTTCT+CGG + chr5_1:47223769-47223788 Msa0733780:CDS 30.0%
! TTTTAACCATGTTCTACGAA+AGG + chr5_1:47223900-47223919 Msa0733780:three_prime_UTR 30.0%
TTTCAATGAATTGGCAGTAT+AGG + chr5_1:47224056-47224075 Msa0733780:three_prime_UTR 30.0%
! ATGCCATTTATCATGATGAT+AGG + chr5_1:47224454-47224473 Msa0733780:three_prime_UTR 30.0%
CAACCTATCATCATGATAAA+TGG - chr5_1:47224460-47224479 None:intergenic 30.0%
!! AGTTGCAGTTCTTTTAAAGA+GGG - chr5_1:47224553-47224572 None:intergenic 30.0%
!! TAGTTGCAGTTCTTTTAAAG+AGG - chr5_1:47224554-47224573 None:intergenic 30.0%
GTGTTTATGTTGAGATGGAT+TGG - chr5_1:47218500-47218519 None:intergenic 35.0%
AAGAGAGAGAAAGATAGAAG+AGG + chr5_1:47218525-47218544 Msa0733780:five_prime_UTR 35.0%
! CAGAGAGTACAAGATCTATA+AGG - chr5_1:47218668-47218687 None:intergenic 35.0%
ACTGTGGCATAAAGTGATTA+TGG + chr5_1:47219142-47219161 Msa0733780:intron 35.0%
GAAAATTCAACTTCTGCCAA+GGG - chr5_1:47219597-47219616 None:intergenic 35.0%
TGAAAATTCAACTTCTGCCA+AGG - chr5_1:47219598-47219617 None:intergenic 35.0%
GTGTTAGTCATTACTAATCG+TGG + chr5_1:47219722-47219741 Msa0733780:intron 35.0%
! GGTTCTTTATGCGATTTTTG+CGG + chr5_1:47219791-47219810 Msa0733780:CDS 35.0%
ATTTACAACCTGCATATGTG+AGG + chr5_1:47219942-47219961 Msa0733780:CDS 35.0%
CAATCAATCAATTGCTTCTC+TGG + chr5_1:47220049-47220068 Msa0733780:CDS 35.0%
GAAGCATGTGAACATAAACT+CGG + chr5_1:47220136-47220155 Msa0733780:CDS 35.0%
CTTCCAAGCAAATACAAATC+TGG + chr5_1:47220247-47220266 Msa0733780:CDS 35.0%
ATAAGTTCATTGGAAGATCC+GGG - chr5_1:47220331-47220350 None:intergenic 35.0%
CATAAGTTCATTGGAAGATC+CGG - chr5_1:47220332-47220351 None:intergenic 35.0%
TTCCAATGAACTTATGCCTA+AGG + chr5_1:47220336-47220355 Msa0733780:CDS 35.0%
TACCTTAGGCATAAGTTCAT+TGG - chr5_1:47220341-47220360 None:intergenic 35.0%
CATATTGCAGTTACAAGACT+AGG - chr5_1:47220387-47220406 None:intergenic 35.0%
ACAGACACGAAACAATAAAG+GGG - chr5_1:47220691-47220710 None:intergenic 35.0%
GTTCAAGCTACTGATAAATC+AGG - chr5_1:47220740-47220759 None:intergenic 35.0%
TGACACATCATCTCAAATTG+TGG + chr5_1:47221011-47221030 Msa0733780:intron 35.0%
TCATCTCAAATTGTGGTCTT+TGG + chr5_1:47221018-47221037 Msa0733780:intron 35.0%
CATCTCAAATTGTGGTCTTT+GGG + chr5_1:47221019-47221038 Msa0733780:intron 35.0%
!! GTCTTTGGGTTTTGATGATA+GGG + chr5_1:47221033-47221052 Msa0733780:intron 35.0%
TGTATAACTGTTCTTGGGTT+TGG + chr5_1:47221116-47221135 Msa0733780:intron 35.0%
CTCAGTTATGTGACATGTAA+CGG - chr5_1:47221657-47221676 None:intergenic 35.0%
TATCACTATTGCACCAATGT+TGG - chr5_1:47221700-47221719 None:intergenic 35.0%
TTCATAGTGTTGTCCAATAC+CGG + chr5_1:47221753-47221772 Msa0733780:intron 35.0%
TTGTTCTGCTATACGCTATT+TGG + chr5_1:47221810-47221829 Msa0733780:intron 35.0%
CTATAGACTGATCTTCTAGT+CGG + chr5_1:47221982-47222001 Msa0733780:intron 35.0%
! GAACATTTAGTTTCCTTTGG+GGG + chr5_1:47222224-47222243 Msa0733780:intron 35.0%
TGTTAACGCCAGAAAATGAA+AGG - chr5_1:47222438-47222457 None:intergenic 35.0%
GTTAACAAAGATACTAGTGC+TGG + chr5_1:47222451-47222470 Msa0733780:CDS 35.0%
CAGATTGAATAGAATTCTCG+GGG - chr5_1:47222543-47222562 None:intergenic 35.0%
GCAGATTGAATAGAATTCTC+GGG - chr5_1:47222544-47222563 None:intergenic 35.0%
AGAAAACCTTAGACAACATC+TGG - chr5_1:47222894-47222913 None:intergenic 35.0%
CAATAGAGACATTAGAGAGA+AGG - chr5_1:47222938-47222957 None:intergenic 35.0%
! AGTTCGTTCACAAAGTGTTA+TGG - chr5_1:47223058-47223077 None:intergenic 35.0%
TTTCAGTGAACTGAAAACTG+TGG - chr5_1:47223132-47223151 None:intergenic 35.0%
AGTTCACTGAAATGATTAGG+CGG + chr5_1:47223140-47223159 Msa0733780:intron 35.0%
AACGCATAATATGAGACAGA+GGG - chr5_1:47223410-47223429 None:intergenic 35.0%
AAACGCATAATATGAGACAG+AGG - chr5_1:47223411-47223430 None:intergenic 35.0%
TCAAAGCTTGGTTGCTATAT+GGG + chr5_1:47223706-47223725 Msa0733780:intron 35.0%
! GTTATGATGAATGCCATTTC+AGG + chr5_1:47223739-47223758 Msa0733780:intron 35.0%
TTCTTTCCTTTCGTAGAACA+TGG - chr5_1:47223909-47223928 None:intergenic 35.0%
! TCCTTTTATGTGGCAAAACA+TGG + chr5_1:47224183-47224202 Msa0733780:three_prime_UTR 35.0%
! ACCATGTTTTGCCACATAAA+AGG - chr5_1:47224187-47224206 None:intergenic 35.0%
ACAATTCATTGTCAGTCCTT+TGG + chr5_1:47224227-47224246 Msa0733780:three_prime_UTR 35.0%
! TTTGGCCACGATATTTTTCA+CGG + chr5_1:47224245-47224264 Msa0733780:three_prime_UTR 35.0%
AAGCTTTGCTGGTATTGTTT+GGG + chr5_1:47224495-47224514 Msa0733780:three_prime_UTR 35.0%
TAGATTAGATATGGGAGGGT+TGG - chr5_1:47218459-47218478 None:intergenic 40.0%
CTGCTGTGTTTATGTTGAGA+TGG - chr5_1:47218505-47218524 None:intergenic 40.0%
ATTGTGCTTCCTGTATCACA+TGG + chr5_1:47219625-47219644 Msa0733780:intron 40.0%
GTTGTGAAACCATGTGATAC+AGG - chr5_1:47219637-47219656 None:intergenic 40.0%
AGCGAAGTGTGGTTTAAAGA+TGG + chr5_1:47219769-47219788 Msa0733780:exon 40.0%
GCGAAGTGTGGTTTAAAGAT+GGG + chr5_1:47219770-47219789 Msa0733780:exon 40.0%
CAAACATAAGGAAGCAGCAT+CGG - chr5_1:47219846-47219865 None:intergenic 40.0%
TCGATCACACGACAAACATA+AGG - chr5_1:47219858-47219877 None:intergenic 40.0%
CACTTTGTCAGAACTGTGAT+TGG + chr5_1:47219984-47220003 Msa0733780:CDS 40.0%
TGAGAAAAAGGGCCATATTG+AGG - chr5_1:47220098-47220117 None:intergenic 40.0%
GAAGGGATGTCTGAGAAAAA+GGG - chr5_1:47220109-47220128 None:intergenic 40.0%
AGAAGGGATGTCTGAGAAAA+AGG - chr5_1:47220110-47220129 None:intergenic 40.0%
TTTCTCAGACATCCCTTCTA+CGG + chr5_1:47220111-47220130 Msa0733780:CDS 40.0%
ACGCCAGATTTGTATTTGCT+TGG - chr5_1:47220253-47220272 None:intergenic 40.0%
ACAATAAAGGGGCAAAACCA+AGG - chr5_1:47220680-47220699 None:intergenic 40.0%
AGTAGCTTGAACTTCAAAGC+AGG + chr5_1:47220748-47220767 Msa0733780:intron 40.0%
TTGAACTTCAAAGCAGGAAC+AGG + chr5_1:47220754-47220773 Msa0733780:intron 40.0%
TACCTTCAGTCCATGTGATT+AGG + chr5_1:47220801-47220820 Msa0733780:intron 40.0%
CTTCATTTCAACGTTCCAAG+AGG + chr5_1:47220960-47220979 Msa0733780:intron 40.0%
!! GGTCTTTGGGTTTTGATGAT+AGG + chr5_1:47221032-47221051 Msa0733780:intron 40.0%
! GCAAAGAATCAATAGCCTTG+CGG + chr5_1:47221202-47221221 Msa0733780:intron 40.0%
ATGTCGTCGTTGTTAACAAG+TGG - chr5_1:47221245-47221264 None:intergenic 40.0%
GCTGGTGATTCAAATTGTCA+AGG + chr5_1:47221552-47221571 Msa0733780:CDS 40.0%
ATTTCGCTACACTATTGCAC+CGG - chr5_1:47221775-47221794 None:intergenic 40.0%
TGCACAGCTCTATAGGTAAT+GGG - chr5_1:47221931-47221950 None:intergenic 40.0%
TTGATTTCTCTACAATGCCC+AGG - chr5_1:47221954-47221973 None:intergenic 40.0%
TATAAAACTAGGACCCCCAA+AGG - chr5_1:47222240-47222259 None:intergenic 40.0%
ACTTCTTCAATGCTTCTCAC+AGG + chr5_1:47222493-47222512 Msa0733780:CDS 40.0%
CTTCTTCAATGCTTCTCACA+GGG + chr5_1:47222494-47222513 Msa0733780:CDS 40.0%
TTCTTCAATGCTTCTCACAG+GGG + chr5_1:47222495-47222514 Msa0733780:CDS 40.0%
CAATGCTGTCATGCGTTATA+AGG + chr5_1:47222573-47222592 Msa0733780:CDS 40.0%
!!! GTTACTTTTACGTCAACCAC+AGG - chr5_1:47222673-47222692 None:intergenic 40.0%
! GGTTTTCCAGATGTTGTCTA+AGG + chr5_1:47222885-47222904 Msa0733780:intron 40.0%
!! AGTGTTATGGTAATGGCTGA+GGG - chr5_1:47223045-47223064 None:intergenic 40.0%
!! AAGTGTTATGGTAATGGCTG+AGG - chr5_1:47223046-47223065 None:intergenic 40.0%
ACTACTTGTGGAAATGGTGA+TGG + chr5_1:47223215-47223234 Msa0733780:intron 40.0%
ATAATGCGATCAGCCAAAGA+GGG + chr5_1:47223331-47223350 Msa0733780:intron 40.0%
!! ATAAGGGTACCATTGGAGAA+AGG - chr5_1:47223494-47223513 None:intergenic 40.0%
CTCAAAGCTTGGTTGCTATA+TGG + chr5_1:47223705-47223724 Msa0733780:intron 40.0%
AGTAAGATATGCTTCTCGGA+AGG + chr5_1:47223773-47223792 Msa0733780:CDS 40.0%
!! AGCTTCTGGTTTGACTCAAA+GGG - chr5_1:47223866-47223885 None:intergenic 40.0%
ATGAATTGGCAGTATAGGCT+TGG + chr5_1:47224061-47224080 Msa0733780:three_prime_UTR 40.0%
TGTTAGCTGACATCACGATT+TGG - chr5_1:47224120-47224139 None:intergenic 40.0%
ATGTCAGCTAACATGTCACA+AGG + chr5_1:47224127-47224146 Msa0733780:three_prime_UTR 40.0%
TTCAAGGCTCATTGCTTGAA+GGG - chr5_1:47224156-47224175 None:intergenic 40.0%
ATTCAAGGCTCATTGCTTGA+AGG - chr5_1:47224157-47224176 None:intergenic 40.0%
GTGAAAAATATCGTGGCCAA+AGG - chr5_1:47224246-47224265 None:intergenic 40.0%
GCAAACCGTGAAAAATATCG+TGG - chr5_1:47224253-47224272 None:intergenic 40.0%
TCTGGCAGTTCTACATACAT+AGG - chr5_1:47224307-47224326 None:intergenic 40.0%
TTGTCCTGCATAGATGTAGA+TGG + chr5_1:47224366-47224385 Msa0733780:three_prime_UTR 40.0%
AACTCCATCTACATCTATGC+AGG - chr5_1:47224373-47224392 None:intergenic 40.0%
TGTATTGCTAGAAGCTTTGC+TGG + chr5_1:47224484-47224503 Msa0733780:three_prime_UTR 40.0%
GAAGCTTTGCTGGTATTGTT+TGG + chr5_1:47224494-47224513 Msa0733780:three_prime_UTR 40.0%
AGGGTCAGTGTTTCTTCTCT+AGG + chr5_1:47218554-47218573 Msa0733780:intron 45.0%
GGGTCAGTGTTTCTTCTCTA+GGG + chr5_1:47218555-47218574 Msa0733780:intron 45.0%
GGGATCATCAGTATGGAAAC+AGG - chr5_1:47219373-47219392 None:intergenic 45.0%
TGGAACTGGGATCATCAGTA+TGG - chr5_1:47219380-47219399 None:intergenic 45.0%
TTAAAGGAGCAAGCGAAGTG+TGG + chr5_1:47219758-47219777 Msa0733780:intron 45.0%
CAAGAACACTTGTATGCGAG+AGG + chr5_1:47219915-47219934 Msa0733780:CDS 45.0%
TCAACACACCTCACATATGC+AGG - chr5_1:47219953-47219972 None:intergenic 45.0%
! AACTGTGATTGGTCAGCTCA+TGG + chr5_1:47219995-47220014 Msa0733780:CDS 45.0%
GTGTGTTGAAGAGGATGGAT+TGG - chr5_1:47220023-47220042 None:intergenic 45.0%
CTCTTGTGTGTTGAAGAGGA+TGG - chr5_1:47220028-47220047 None:intergenic 45.0%
CATCCTCTTCAACACACAAG+AGG + chr5_1:47220026-47220045 Msa0733780:CDS 45.0%
TTGCCTCTTGTGTGTTGAAG+AGG - chr5_1:47220032-47220051 None:intergenic 45.0%
CTTCCGAGCTTTCCTCAATA+TGG + chr5_1:47220083-47220102 Msa0733780:CDS 45.0%
TTCTCAGACATCCCTTCTAC+GGG + chr5_1:47220112-47220131 Msa0733780:CDS 45.0%
CTGGTTCAAAATACGGGGTT+TGG - chr5_1:47220305-47220324 None:intergenic 45.0%
!! CAAACCCCGTATTTTGAACC+AGG + chr5_1:47220303-47220322 Msa0733780:CDS 45.0%
GCAATATGTTTGTCGCACGA+CGG + chr5_1:47220399-47220418 Msa0733780:intron 45.0%
! ATTCTTTTGGCGGTTTGCCT+TGG + chr5_1:47220660-47220679 Msa0733780:intron 45.0%
! CTCCTAATCACATGGACTGA+AGG - chr5_1:47220806-47220825 None:intergenic 45.0%
TGGCTACTCTCCTAATCACA+TGG - chr5_1:47220814-47220833 None:intergenic 45.0%
CACACGAAAGAGAATCCTCT+TGG - chr5_1:47220978-47220997 None:intergenic 45.0%
GGATTCTCTTTCGTGTGTGA+CGG + chr5_1:47220981-47221000 Msa0733780:intron 45.0%
GATTCTCTTTCGTGTGTGAC+GGG + chr5_1:47220982-47221001 Msa0733780:intron 45.0%
! TGCAGCTTGATGACAGTAGA+TGG + chr5_1:47221164-47221183 Msa0733780:intron 45.0%
TTGCGGCTTACATGCATTGA+CGG + chr5_1:47221219-47221238 Msa0733780:intron 45.0%
GTTACTATGTCCCAGCAGAA+AGG + chr5_1:47221356-47221375 Msa0733780:intron 45.0%
AAAGACATGTCTGCTAGTGC+TGG + chr5_1:47221534-47221553 Msa0733780:CDS 45.0%
TCCTCAGTGTTGTCCAACAT+TGG + chr5_1:47221684-47221703 Msa0733780:intron 45.0%
ACCAATGTTGGACAACACTG+AGG - chr5_1:47221688-47221707 None:intergenic 45.0%
! CTACACTATTGCACCGGTAT+TGG - chr5_1:47221769-47221788 None:intergenic 45.0%
GTGCACAGCTCTATAGGTAA+TGG - chr5_1:47221932-47221951 None:intergenic 45.0%
! TCTTGTTATCTCCCGATCTC+TGG + chr5_1:47222027-47222046 Msa0733780:intron 45.0%
TGCTCACTATCACCAGAGAT+CGG - chr5_1:47222042-47222061 None:intergenic 45.0%
!! GTTTTTAGGGGTCATCAGCA+AGG + chr5_1:47222308-47222327 Msa0733780:intron 45.0%
TGAATAGAATTCTCGGGGCA+AGG - chr5_1:47222538-47222557 None:intergenic 45.0%
!! GTGTTATGGTAATGGCTGAG+GGG - chr5_1:47223044-47223063 None:intergenic 45.0%
CATAATGCGATCAGCCAAAG+AGG + chr5_1:47223330-47223349 Msa0733780:intron 45.0%
ATATGCTTCTCGGAAGGCTA+GGG + chr5_1:47223779-47223798 Msa0733780:CDS 45.0%
GATGTCAGGAAACGTGTGAA+AGG + chr5_1:47223804-47223823 Msa0733780:CDS 45.0%
!! CAGCTTCTGGTTTGACTCAA+AGG - chr5_1:47223867-47223886 None:intergenic 45.0%
AGTGTAAACTCAGCAGCTTC+TGG - chr5_1:47223880-47223899 None:intergenic 45.0%
CAAACCGTCTGATTTAACGC+AGG + chr5_1:47223988-47224007 Msa0733780:three_prime_UTR 45.0%
ATTGGCAGTATAGGCTTGGA+AGG + chr5_1:47224065-47224084 Msa0733780:three_prime_UTR 45.0%
TTGGCAGTATAGGCTTGGAA+GGG + chr5_1:47224066-47224085 Msa0733780:three_prime_UTR 45.0%
! CACGATTTGGATATCCTTCG+CGG - chr5_1:47224107-47224126 None:intergenic 45.0%
TCAAGGCTCATTGCTTGAAG+GGG - chr5_1:47224155-47224174 None:intergenic 45.0%
GTATGTAGAACTGCCAGAGA+TGG + chr5_1:47224309-47224328 Msa0733780:three_prime_UTR 45.0%
GACACTTATCATGCCATCTC+TGG - chr5_1:47224325-47224344 None:intergenic 45.0%
!! AGATATGGGAGGGTTGGTGT+AGG - chr5_1:47218453-47218472 None:intergenic 50.0%
TGACACTGACATGTCGACAC+TGG + chr5_1:47219472-47219491 Msa0733780:intron 50.0%
! ATAAGGAAGCAGCATCGGAG+CGG - chr5_1:47219841-47219860 None:intergenic 50.0%
TTGCTTCTCTGGCTGTCCTT+CGG + chr5_1:47220060-47220079 Msa0733780:CDS 50.0%
GGGCCATATTGAGGAAAGCT+CGG - chr5_1:47220089-47220108 None:intergenic 50.0%
TCTCAGACATCCCTTCTACG+GGG + chr5_1:47220113-47220132 Msa0733780:CDS 50.0%
AGAACAGTGACAACAGTGCC+AGG + chr5_1:47220176-47220195 Msa0733780:CDS 50.0%
GAACAGTGACAACAGTGCCA+GGG + chr5_1:47220177-47220196 Msa0733780:CDS 50.0%
GACACACTCTTGCTTTCTGG+AGG - chr5_1:47220205-47220224 None:intergenic 50.0%
CCAGACACACTCTTGCTTTC+TGG - chr5_1:47220208-47220227 None:intergenic 50.0%
! CCAGAAAGCAAGAGTGTGTC+TGG + chr5_1:47220205-47220224 Msa0733780:CDS 50.0%
! TGTGTCTGGTTCAGCTCAAG+TGG + chr5_1:47220219-47220238 Msa0733780:CDS 50.0%
GTCAATGCATGTAAGCCGCA+AGG - chr5_1:47221220-47221239 None:intergenic 50.0%
GGCTATAGCACTTAGCGTAG+TGG + chr5_1:47221854-47221873 Msa0733780:intron 50.0%
TACCTATAGAGCTGTGCACC+TGG + chr5_1:47221933-47221952 Msa0733780:intron 50.0%
ACCTATAGAGCTGTGCACCT+GGG + chr5_1:47221934-47221953 Msa0733780:intron 50.0%
GCTCACTATCACCAGAGATC+GGG - chr5_1:47222041-47222060 None:intergenic 50.0%
CAGCATTGCTGCATTCTGGT+TGG - chr5_1:47222348-47222367 None:intergenic 50.0%
GATGCAGCATTGCTGCATTC+TGG - chr5_1:47222352-47222371 None:intergenic 50.0%
GCTGGTGACTATCAAGAGTG+TGG + chr5_1:47222469-47222488 Msa0733780:CDS 50.0%
ATAGAATTCTCGGGGCAAGG+AGG - chr5_1:47222535-47222554 None:intergenic 50.0%
GATATGCTTCTCGGAAGGCT+AGG + chr5_1:47223778-47223797 Msa0733780:CDS 50.0%
TCAGGAAACGTGTGAAAGGC+CGG + chr5_1:47223808-47223827 Msa0733780:CDS 50.0%
! TTTCCCCAGCTTTGACGAAC+CGG - chr5_1:47223830-47223849 None:intergenic 50.0%
GGCTCCTGCGTTAAATCAGA+CGG - chr5_1:47223995-47224014 None:intergenic 50.0%
TTGGATATCCTTCGCGGTGA+AGG - chr5_1:47224101-47224120 None:intergenic 50.0%
! GCGATTTTTGCGGAGACCAG+AGG + chr5_1:47219801-47219820 Msa0733780:CDS 55.0%
TTGCGGAGACCAGAGGTCTT+TGG + chr5_1:47219808-47219827 Msa0733780:CDS 55.0%
GGCAGTACACCAAAGACCTC+TGG - chr5_1:47219820-47219839 None:intergenic 55.0%
CTCAGACATCCCTTCTACGG+GGG + chr5_1:47220114-47220133 Msa0733780:CDS 55.0%
CACATGCTTCCCCCGTAGAA+GGG - chr5_1:47220126-47220145 None:intergenic 55.0%
TCACATGCTTCCCCCGTAGA+AGG - chr5_1:47220127-47220146 None:intergenic 55.0%
! CTTGCTTTCTGGAGGAACCC+TGG - chr5_1:47220197-47220216 None:intergenic 55.0%
ACGGGGTTTGGCACTTGACT+CGG - chr5_1:47220293-47220312 None:intergenic 55.0%
GGCGCCTGGTTCAAAATACG+GGG - chr5_1:47220310-47220329 None:intergenic 55.0%
GGGCGCCTGGTTCAAAATAC+GGG - chr5_1:47220311-47220330 None:intergenic 55.0%
CGGGCGCCTGGTTCAAAATA+CGG - chr5_1:47220312-47220331 None:intergenic 55.0%
!! CGTATTTTGAACCAGGCGCC+CGG + chr5_1:47220310-47220329 Msa0733780:CDS 55.0%
AGTGCAGGAGCCTTTCTGCT+GGG - chr5_1:47221369-47221388 None:intergenic 55.0%
TAGTGCAGGAGCCTTTCTGC+TGG - chr5_1:47221370-47221389 None:intergenic 55.0%
!! AAAGGCCGGTTCGTCAAAGC+TGG + chr5_1:47223822-47223841 Msa0733780:CDS 55.0%
!! AAGGCCGGTTCGTCAAAGCT+GGG + chr5_1:47223823-47223842 Msa0733780:CDS 55.0%
GAGGAAAGCTCGGAAGCCGA+AGG - chr5_1:47220079-47220098 None:intergenic 60.0%
CGGGGTTTGGCACTTGACTC+GGG - chr5_1:47220292-47220311 None:intergenic 60.0%
!! TCAAGGCGCTGTTGCTGCTG+AGG + chr5_1:47221569-47221588 Msa0733780:CDS 60.0%
GCCCAGGTGCACAGCTCTAT+AGG - chr5_1:47221938-47221957 None:intergenic 60.0%
GGAAGGCTAGGGCTGATGTC+AGG + chr5_1:47223790-47223809 Msa0733780:CDS 60.0%
!! AGGCCGGTTCGTCAAAGCTG+GGG + chr5_1:47223824-47223843 Msa0733780:CDS 60.0%
CATTGGAAGATCCGGGCGCC+TGG - chr5_1:47220324-47220343 None:intergenic 65.0%
TTCTCACAGGGGAGCCTCCC+TGG + chr5_1:47222506-47222525 Msa0733780:CDS 65.0%
TCGGGGCAAGGAGGACACCA+GGG - chr5_1:47222526-47222545 None:intergenic 65.0%
ACGCGCATCCTTCACCGCGA+AGG + chr5_1:47224090-47224109 Msa0733780:three_prime_UTR 65.0%
GGGCAAGGAGGACACCAGGG+AGG - chr5_1:47222523-47222542 None:intergenic 70.0%
CTCGGGGCAAGGAGGACACC+AGG - chr5_1:47222527-47222546 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 47218413 47224585 47218413 ID=Msa0733780;Name=Msa0733780
chr5_1 mRNA 47218413 47224585 47218413 ID=Msa0733780-mRNA-1;Parent=Msa0733780;Name=Msa0733780-mRNA-1;_AED=0.13;_eAED=0.13;_QI=216|1|1|1|0.6|0.5|6|695|410
chr5_1 exon 47218413 47218556 47218413 ID=Msa0733780-mRNA-1:exon:13512;Parent=Msa0733780-mRNA-1
chr5_1 exon 47218759 47218806 47218759 ID=Msa0733780-mRNA-1:exon:13513;Parent=Msa0733780-mRNA-1
chr5_1 exon 47219764 47220357 47219764 ID=Msa0733780-mRNA-1:exon:13514;Parent=Msa0733780-mRNA-1
chr5_1 exon 47221357 47221590 47221357 ID=Msa0733780-mRNA-1:exon:13515;Parent=Msa0733780-mRNA-1
chr5_1 exon 47222316 47222614 47222316 ID=Msa0733780-mRNA-1:exon:13516;Parent=Msa0733780-mRNA-1
chr5_1 exon 47223761 47224585 47223761 ID=Msa0733780-mRNA-1:exon:13517;Parent=Msa0733780-mRNA-1
chr5_1 five_prime_UTR 47218413 47218556 47218413 ID=Msa0733780-mRNA-1:five_prime_utr;Parent=Msa0733780-mRNA-1
chr5_1 five_prime_UTR 47218759 47218806 47218759 ID=Msa0733780-mRNA-1:five_prime_utr;Parent=Msa0733780-mRNA-1
chr5_1 five_prime_UTR 47219764 47219787 47219764 ID=Msa0733780-mRNA-1:five_prime_utr;Parent=Msa0733780-mRNA-1
chr5_1 CDS 47219788 47220357 47219788 ID=Msa0733780-mRNA-1:cds;Parent=Msa0733780-mRNA-1
chr5_1 CDS 47221357 47221590 47221357 ID=Msa0733780-mRNA-1:cds;Parent=Msa0733780-mRNA-1
chr5_1 CDS 47222316 47222614 47222316 ID=Msa0733780-mRNA-1:cds;Parent=Msa0733780-mRNA-1
chr5_1 CDS 47223761 47223890 47223761 ID=Msa0733780-mRNA-1:cds;Parent=Msa0733780-mRNA-1
chr5_1 three_prime_UTR 47223891 47224585 47223891 ID=Msa0733780-mRNA-1:three_prime_utr;Parent=Msa0733780-mRNA-1
Gene Sequence

>Msa0733780

ATGGGTTCTTTATGCGATTTTTGCGGAGACCAGAGGTCTTTGGTGTACTGCCGCTCCGATGCTGCTTCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAACGAACTTTCTAAGCGTCATTCAAGAACACTTGTATGCGAGAGGTGTAATTTACAACCTGCATATGTGAGGTGTGTTGAAGAGAAAGTTTCACTTTGTCAGAACTGTGATTGGTCAGCTCATGGTACCAATCCATCCTCTTCAACACACAAGAGGCAATCAATCAATTGCTTCTCTGGCTGTCCTTCGGCTTCCGAGCTTTCCTCAATATGGCCCTTTTTCTCAGACATCCCTTCTACGGGGGAAGCATGTGAACATAAACTCGGTTTGATGAGCATTAACGAGAACAGTGACAACAGTGCCAGGGTTCCTCCAGAAAGCAAGAGTGTGTCTGGTTCAGCTCAAGTGGCCGATCTTCCAAGCAAATACAAATCTGGCGTCGACACATCTTCAATACCCGAGTCAAGTGCCAAACCCCGTATTTTGAACCAGGCGCCCGGATCTTCCAATGAACTTATGCCTAAGTTACTATGTCCCAGCAGAAAGGCTCCTGCACTATATGAAGATGATAAGTTGCTTGGTGATTTCAACATAGATGAGATGGATTTTGAACTTGAGAACTATACGGAACTTTTTGACTTTGCTCTCAACCACTCTGAAGAGTTTTTTGAAAATGGTGGTATTGATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGCTGGTGATTCAAATTGTCAAGGCGCTGTTGCTGCTGAGGGGTCATCAGCAAGGTTTGTTAGTGCTATCCAACCAGAATGCAGCAATGCTGCATCTGCAGATTCAATATTAAGTACTAAAACTGAACCAGTTATTTATTTTACGGAAAGGCAATCAAACCTTTCATTTTCTGGCGTTAACAAAGATACTAGTGCTGGTGACTATCAAGAGTGTGGTACTTCTTCAATGCTTCTCACAGGGGAGCCTCCCTGGTGTCCTCCTTGCCCCGAGAATTCTATTCAATCTGCTAATCGCAGCAATGCTGTCATGCGTTATAAGGAAAAGAAAAAGAATCGAAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCTAGGGCTGATGTCAGGAAACGTGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACATACGATTACGACCCTTTGAGTCAAACCAGAAGCTGCTGA
Protein sequence

>Msa0733780

MGSLCDFCGDQRSLVYCRSDAASLCLSCDRNVHSANELSKRHSRTLVCERCNLQPAYVRCVEEKVSLCQNCDWSAHGTNPSSSTHKRQSINCFSGCPSASELSSIWPFFSDIPSTGEACEHKLGLMSINENSDNSARVPPESKSVSGSAQVADLPSKYKSGVDTSSIPESSAKPRILNQAPGSSNELMPKLLCPSRKAPALYEDDKLLGDFNIDEMDFELENYTELFDFALNHSEEFFENGGIDSLFERKDMSASAGDSNCQGAVAAEGSSARFVSAIQPECSNAASADSILSTKTEPVIYFTERQSNLSFSGVNKDTSAGDYQECGTSSMLLTGEPPWCPPCPENSIQSANRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETYDYDPLSQTRSC*