Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733910 | XP_003615578.1 | 95.765 | 307 | 13 | 0 | 1 | 307 | 1 | 307 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733910 | sp|Q8S9H7|DIV_ANTMA | 59.873 | 314 | 108 | 11 | 5 | 307 | 1 | 307 | 5.67e-114 | 334 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733910 | G7K698 | 95.765 | 307 | 13 | 0 | 1 | 307 | 1 | 307 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0733910 | TF | MYB |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733910 | MtrunA17_Chr5g0429521 | 95.765 | 307 | 13 | 0 | 1 | 307 | 1 | 307 | 0.0 | 615 |
| Msa0733910 | MtrunA17_Chr3g0104071 | 66.261 | 329 | 82 | 9 | 1 | 307 | 1 | 322 | 1.72e-148 | 419 |
| Msa0733910 | MtrunA17_Chr7g0241761 | 58.654 | 312 | 114 | 8 | 1 | 303 | 7 | 312 | 4.83e-117 | 339 |
| Msa0733910 | MtrunA17_Chr5g0436501 | 61.881 | 202 | 70 | 3 | 4 | 203 | 2 | 198 | 2.00e-85 | 257 |
| Msa0733910 | MtrunA17_Chr1g0162081 | 47.577 | 227 | 101 | 4 | 22 | 236 | 5 | 225 | 7.57e-59 | 190 |
| Msa0733910 | MtrunA17_Chr1g0210471 | 50.847 | 177 | 78 | 2 | 27 | 200 | 22 | 192 | 7.14e-57 | 183 |
| Msa0733910 | MtrunA17_Chr4g0062741 | 44.118 | 238 | 95 | 5 | 29 | 233 | 8 | 240 | 2.28e-55 | 181 |
| Msa0733910 | MtrunA17_Chr8g0365011 | 34.351 | 262 | 128 | 6 | 23 | 270 | 2 | 233 | 3.50e-39 | 139 |
| Msa0733910 | MtrunA17_Chr4g0055931 | 58.182 | 110 | 36 | 2 | 90 | 196 | 57 | 159 | 8.63e-32 | 120 |
| Msa0733910 | MtrunA17_Chr2g0331031 | 73.239 | 71 | 19 | 0 | 127 | 197 | 104 | 174 | 1.06e-31 | 121 |
| Msa0733910 | MtrunA17_Chr6g0488471 | 52.632 | 114 | 49 | 1 | 126 | 239 | 91 | 199 | 3.68e-31 | 118 |
| Msa0733910 | MtrunA17_Chr8g0389241 | 69.333 | 75 | 22 | 1 | 123 | 197 | 96 | 169 | 2.34e-30 | 115 |
| Msa0733910 | MtrunA17_Chr5g0415191 | 70.513 | 78 | 23 | 0 | 126 | 203 | 96 | 173 | 1.10e-28 | 112 |
| Msa0733910 | MtrunA17_Chr4g0059701 | 58.000 | 100 | 41 | 1 | 103 | 202 | 56 | 154 | 5.66e-27 | 107 |
| Msa0733910 | MtrunA17_Chr3g0135671 | 48.780 | 123 | 49 | 4 | 129 | 240 | 88 | 207 | 2.60e-26 | 103 |
| Msa0733910 | MtrunA17_Chr5g0440731 | 53.846 | 91 | 38 | 2 | 124 | 211 | 97 | 186 | 1.38e-24 | 100 |
| Msa0733910 | MtrunA17_Chr3g0092621 | 64.179 | 67 | 24 | 0 | 132 | 198 | 84 | 150 | 3.49e-24 | 96.7 |
| Msa0733910 | MtrunA17_Chr5g0440741 | 59.259 | 81 | 29 | 2 | 134 | 211 | 102 | 181 | 6.50e-24 | 98.6 |
| Msa0733910 | MtrunA17_Chr8g0364741 | 37.500 | 128 | 69 | 3 | 26 | 149 | 7 | 127 | 1.85e-23 | 93.2 |
| Msa0733910 | MtrunA17_Chr5g0409841 | 55.814 | 86 | 35 | 2 | 128 | 211 | 88 | 172 | 1.19e-22 | 94.0 |
| Msa0733910 | MtrunA17_Chr5g0432921 | 36.471 | 170 | 88 | 7 | 23 | 188 | 15 | 168 | 1.20e-22 | 94.0 |
| Msa0733910 | MtrunA17_Chr5g0432941 | 35.673 | 171 | 87 | 6 | 23 | 188 | 16 | 168 | 6.32e-22 | 92.0 |
| Msa0733910 | MtrunA17_Chr5g0409831 | 56.322 | 87 | 34 | 2 | 128 | 211 | 73 | 158 | 2.98e-20 | 87.4 |
| Msa0733910 | MtrunA17_Chr6g0452791 | 66.129 | 62 | 20 | 1 | 132 | 192 | 80 | 141 | 3.20e-20 | 85.9 |
| Msa0733910 | MtrunA17_Chr1g0155181 | 49.296 | 71 | 36 | 0 | 26 | 96 | 4 | 74 | 1.50e-19 | 81.6 |
| Msa0733910 | MtrunA17_Chr5g0404101 | 44.000 | 75 | 42 | 0 | 17 | 91 | 7 | 81 | 2.31e-19 | 81.3 |
| Msa0733910 | MtrunA17_Chr8g0373131 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.47e-19 | 79.7 |
| Msa0733910 | MtrunA17_Chr8g0373111 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.61e-19 | 79.7 |
| Msa0733910 | MtrunA17_Chr8g0373121 | 51.389 | 72 | 34 | 1 | 25 | 96 | 1 | 71 | 5.61e-19 | 79.7 |
| Msa0733910 | MtrunA17_Chr3g0144631 | 52.308 | 65 | 31 | 0 | 29 | 93 | 16 | 80 | 5.74e-19 | 79.7 |
| Msa0733910 | MtrunA17_Chr8g0364731 | 53.261 | 92 | 40 | 2 | 141 | 230 | 10 | 100 | 6.52e-19 | 82.8 |
| Msa0733910 | MtrunA17_Chr3g0141601 | 54.545 | 66 | 30 | 0 | 26 | 91 | 4 | 69 | 1.11e-18 | 79.3 |
| Msa0733910 | MtrunA17_Chr6g0449111 | 47.222 | 72 | 38 | 0 | 26 | 97 | 7 | 78 | 1.39e-17 | 75.9 |
| Msa0733910 | MtrunA17_Chr8g0373101 | 49.231 | 65 | 32 | 1 | 25 | 89 | 1 | 64 | 8.12e-16 | 70.9 |
| Msa0733910 | MtrunA17_Chr5g0404301 | 50.820 | 61 | 29 | 1 | 29 | 89 | 4 | 63 | 4.48e-15 | 68.9 |
| Msa0733910 | MtrunA17_Chr3g0081631 | 50.746 | 67 | 32 | 1 | 26 | 91 | 7 | 73 | 6.25e-15 | 69.3 |
| Msa0733910 | MtrunA17_Chr3g0113121 | 37.879 | 132 | 72 | 2 | 80 | 201 | 40 | 171 | 2.16e-14 | 70.9 |
| Msa0733910 | MtrunA17_Chr7g0255841 | 53.333 | 60 | 28 | 0 | 32 | 91 | 15 | 74 | 2.20e-14 | 67.8 |
| Msa0733910 | MtrunA17_Chr1g0192061 | 52.055 | 73 | 30 | 2 | 134 | 202 | 63 | 134 | 2.16e-13 | 67.4 |
| Msa0733910 | MtrunA17_Chr3g0141641 | 44.444 | 63 | 35 | 0 | 29 | 91 | 3 | 65 | 2.27e-12 | 62.4 |
| Msa0733910 | MtrunA17_Chr8g0370121 | 43.056 | 72 | 36 | 2 | 129 | 196 | 97 | 167 | 1.58e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0733910 | AT2G38090.1 | 65.877 | 211 | 53 | 3 | 5 | 201 | 5 | 210 | 6.77e-99 | 293 |
| Msa0733910 | AT5G58900.1 | 68.224 | 214 | 53 | 4 | 5 | 204 | 1 | 213 | 8.01e-95 | 282 |
| Msa0733910 | AT5G01200.1 | 61.692 | 201 | 60 | 5 | 16 | 201 | 17 | 215 | 4.78e-78 | 239 |
| Msa0733910 | AT5G05790.2 | 63.021 | 192 | 63 | 4 | 14 | 201 | 13 | 200 | 7.64e-78 | 239 |
| Msa0733910 | AT5G05790.1 | 63.021 | 192 | 63 | 4 | 14 | 201 | 13 | 200 | 7.64e-78 | 239 |
| Msa0733910 | AT3G11280.2 | 67.052 | 173 | 48 | 2 | 29 | 201 | 33 | 196 | 9.20e-78 | 238 |
| Msa0733910 | AT3G11280.1 | 67.052 | 173 | 48 | 2 | 29 | 201 | 33 | 196 | 9.20e-78 | 238 |
| Msa0733910 | AT5G08520.1 | 51.136 | 176 | 81 | 3 | 29 | 200 | 12 | 186 | 2.66e-54 | 179 |
| Msa0733910 | AT1G49010.1 | 50.739 | 203 | 73 | 5 | 23 | 200 | 2 | 202 | 4.89e-54 | 179 |
| Msa0733910 | AT5G04760.1 | 42.342 | 222 | 115 | 3 | 26 | 244 | 3 | 214 | 1.71e-50 | 166 |
| Msa0733910 | AT5G23650.1 | 41.026 | 195 | 89 | 3 | 18 | 197 | 2 | 185 | 2.03e-41 | 147 |
| Msa0733910 | AT5G47390.1 | 60.185 | 108 | 35 | 3 | 92 | 197 | 60 | 161 | 5.85e-32 | 122 |
| Msa0733910 | AT3G10580.2 | 42.135 | 178 | 79 | 7 | 23 | 197 | 2 | 158 | 8.87e-32 | 119 |
| Msa0733910 | AT3G10580.1 | 42.135 | 178 | 79 | 7 | 23 | 197 | 2 | 158 | 1.58e-31 | 119 |
| Msa0733910 | AT4G09450.1 | 39.572 | 187 | 93 | 5 | 28 | 214 | 6 | 172 | 1.58e-30 | 114 |
| Msa0733910 | AT5G61620.1 | 48.819 | 127 | 63 | 1 | 127 | 253 | 103 | 227 | 1.55e-28 | 112 |
| Msa0733910 | AT5G56840.1 | 50.000 | 104 | 51 | 1 | 98 | 200 | 57 | 160 | 3.00e-27 | 106 |
| Msa0733910 | AT1G70000.1 | 70.833 | 72 | 21 | 0 | 126 | 197 | 92 | 163 | 1.31e-26 | 105 |
| Msa0733910 | AT1G70000.2 | 70.833 | 72 | 21 | 0 | 126 | 197 | 92 | 163 | 1.31e-26 | 105 |
| Msa0733910 | AT3G16350.1 | 72.222 | 72 | 20 | 0 | 127 | 198 | 132 | 203 | 2.11e-25 | 104 |
| Msa0733910 | AT1G74840.2 | 70.833 | 72 | 21 | 0 | 127 | 198 | 91 | 162 | 6.50e-25 | 100 |
| Msa0733910 | AT1G74840.1 | 70.833 | 72 | 21 | 0 | 127 | 198 | 91 | 162 | 8.81e-25 | 100 |
| Msa0733910 | AT1G19000.2 | 52.727 | 110 | 48 | 1 | 128 | 237 | 98 | 203 | 2.46e-24 | 100 |
| Msa0733910 | AT1G19000.1 | 52.727 | 110 | 48 | 1 | 128 | 237 | 98 | 203 | 2.46e-24 | 100 |
| Msa0733910 | AT1G75250.1 | 58.462 | 65 | 27 | 0 | 29 | 93 | 12 | 76 | 2.17e-21 | 88.2 |
| Msa0733910 | AT1G75250.2 | 58.462 | 65 | 27 | 0 | 29 | 93 | 12 | 76 | 2.72e-21 | 87.0 |
| Msa0733910 | AT3G10590.1 | 35.912 | 181 | 98 | 6 | 26 | 197 | 4 | 175 | 4.08e-21 | 89.7 |
| Msa0733910 | AT2G21650.1 | 52.941 | 68 | 32 | 0 | 29 | 96 | 14 | 81 | 9.18e-18 | 77.8 |
| Msa0733910 | AT4G39250.1 | 49.231 | 65 | 33 | 0 | 29 | 93 | 14 | 78 | 1.52e-16 | 74.3 |
| Msa0733910 | AT1G19510.1 | 51.613 | 62 | 30 | 0 | 32 | 93 | 15 | 76 | 2.15e-15 | 71.2 |
| Msa0733910 | AT2G18328.1 | 52.542 | 59 | 28 | 0 | 33 | 91 | 15 | 73 | 4.80e-13 | 63.9 |
| Msa0733910 | AT4G36570.1 | 56.818 | 44 | 19 | 0 | 29 | 72 | 12 | 55 | 1.02e-11 | 59.7 |
Find 94 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGACATGTGTTAAAATTT+TGG | 0.158417 | 5_1:+47443370 | Msa0733910:three_prime_UTR |
| CTTGAAAACTTAGCCCAATT+TGG | 0.159886 | 5_1:-47441211 | None:intergenic |
| TTCTCAACTGCTTTCCAAAT+TGG | 0.186049 | 5_1:+47441197 | Msa0733910:five_prime_UTR |
| AATCAACACTATGGACTTAT+TGG | 0.204334 | 5_1:-47443479 | None:intergenic |
| ATTATTATCTCTTATCTAAT+TGG | 0.242269 | 5_1:-47441401 | None:intergenic |
| AGATATTCACATATACCTTT+TGG | 0.256814 | 5_1:-47443186 | None:intergenic |
| TTAGATTGGGTGAGCAGTTC+TGG | 0.273897 | 5_1:+47442022 | Msa0733910:CDS |
| TTCTTGGCATATCAACTTAC+AGG | 0.273992 | 5_1:+47443397 | Msa0733910:three_prime_UTR |
| TATTTCATAAGACAGCTTTC+AGG | 0.304151 | 5_1:+47442735 | Msa0733910:CDS |
| CACCTTTGCCATACTTCTTT+AGG | 0.307378 | 5_1:-47442641 | None:intergenic |
| CCTTTCTTCCTTTCCTGCTC+AGG | 0.322349 | 5_1:-47442094 | None:intergenic |
| CTCACCCAATCTAAGGTAAA+AGG | 0.326033 | 5_1:-47442013 | None:intergenic |
| GAAAACTCTAAAATTTGAAT+AGG | 0.330408 | 5_1:-47441650 | None:intergenic |
| TCTCAACTGCTTTCCAAATT+GGG | 0.350224 | 5_1:+47441198 | Msa0733910:five_prime_UTR |
| TCTGGTTATGATGAATTTAG+AGG | 0.373350 | 5_1:+47442040 | Msa0733910:CDS |
| CTACTAGGCCTAAAGAAGTA+TGG | 0.375050 | 5_1:+47442633 | Msa0733910:CDS |
| GCTGGGTTGATTCCAGTTCC+TGG | 0.382171 | 5_1:+47441971 | Msa0733910:CDS |
| CGGTGAAGTGGATCTATTAC+CGG | 0.382561 | 5_1:-47442844 | None:intergenic |
| TTGAGGGGAGCGTGCGTTGA+TGG | 0.386009 | 5_1:+47443223 | Msa0733910:three_prime_UTR |
| ACATCACCGACCGTCTTTCC+TGG | 0.388704 | 5_1:-47441902 | None:intergenic |
| AGAACTGCTCACCCAATCTA+AGG | 0.399431 | 5_1:-47442020 | None:intergenic |
| AACATTATTCACATGCATAA+AGG | 0.404368 | 5_1:+47443111 | Msa0733910:CDS |
| TGATAAGATGAAGTGGGAAA+TGG | 0.405855 | 5_1:+47441718 | Msa0733910:exon |
| TATGATGAATTTAGAGGAAG+TGG | 0.409816 | 5_1:+47442046 | Msa0733910:CDS |
| AAGTTTGTTGGTGCTGCTGC+TGG | 0.410002 | 5_1:-47442890 | None:intergenic |
| GTTGTGATGAATGTTGCATT+TGG | 0.410990 | 5_1:-47443091 | None:intergenic |
| TGATGTGATGAGACAATATA+AGG | 0.419767 | 5_1:+47441919 | Msa0733910:CDS |
| AGAAGTATGGCAAAGGTGAT+TGG | 0.420618 | 5_1:+47442646 | Msa0733910:CDS |
| AAAACTCTAAAATTTGAATA+GGG | 0.421518 | 5_1:-47441649 | None:intergenic |
| CAAGACCAAAATCTTCAAAA+AGG | 0.427744 | 5_1:+47443029 | Msa0733910:CDS |
| AAGCAGTTGAGAAGGAAGAA+AGG | 0.430795 | 5_1:-47441187 | None:intergenic |
| AGCAGTTGAGAAGGAAGAAA+GGG | 0.432424 | 5_1:-47441186 | None:intergenic |
| ATTTCTAGTGAAGTTTATCA+TGG | 0.438525 | 5_1:+47443533 | Msa0733910:three_prime_UTR |
| GTTATCTTCCATACACCAAT+TGG | 0.440080 | 5_1:-47441774 | None:intergenic |
| GATGTCTGTAATATAGAAGC+TGG | 0.449562 | 5_1:+47441953 | Msa0733910:CDS |
| CTTATGTTCTGGTGGATTGA+GGG | 0.453667 | 5_1:+47443207 | Msa0733910:three_prime_UTR |
| TGCTCATGAGCTGGATTGAA+AGG | 0.456365 | 5_1:-47442960 | None:intergenic |
| TTGTGTTCTTCTTCAGTCCA+TGG | 0.457416 | 5_1:-47442121 | None:intergenic |
| CATACACACAAAACTCCAAT+TGG | 0.463612 | 5_1:+47441759 | Msa0733910:CDS |
| GGAGTATTATAACCAGGAAC+TGG | 0.465713 | 5_1:-47441983 | None:intergenic |
| TCTTATGTTCTGGTGGATTG+AGG | 0.471104 | 5_1:+47443206 | Msa0733910:three_prime_UTR |
| GCATGGCTTGCTACTTGAGT+TGG | 0.471843 | 5_1:-47442705 | None:intergenic |
| ACAAAACTCCAATTGGTGTA+TGG | 0.484625 | 5_1:+47441766 | Msa0733910:CDS |
| TATGTGAATATCTTATGTTC+TGG | 0.491831 | 5_1:+47443196 | Msa0733910:three_prime_UTR |
| TCCTGCAGATTATTTCTACT+AGG | 0.501666 | 5_1:+47442618 | Msa0733910:intron |
| ATGAAAACTTGCTCATGAGC+TGG | 0.506678 | 5_1:-47442969 | None:intergenic |
| AGAGGAAGATAAAGCAGAGA+AGG | 0.513934 | 5_1:-47441592 | None:intergenic |
| TTAGAGCTCCTGAGCAGGAA+AGG | 0.515723 | 5_1:+47442086 | Msa0733910:CDS |
| TCTAAGGTAAAAGGTGAAGT+AGG | 0.517348 | 5_1:-47442004 | None:intergenic |
| CCTGAGCAGGAAAGGAAGAA+AGG | 0.521387 | 5_1:+47442094 | Msa0733910:CDS |
| CATAGAATTCTGCGGTGAAG+TGG | 0.521435 | 5_1:-47442856 | None:intergenic |
| TTTAGTTAGAGCTCCTGAGC+AGG | 0.523673 | 5_1:+47442081 | Msa0733910:CDS |
| AATGATTGAGGTGGGTGAGA+AGG | 0.527301 | 5_1:+47443297 | Msa0733910:three_prime_UTR |
| GAAAACTTGATAAGATGAAG+TGG | 0.527680 | 5_1:+47441711 | Msa0733910:exon |
| TCTTATATCATTGTCAATCA+AGG | 0.528102 | 5_1:-47443335 | None:intergenic |
| TGAGAAGGAAGAAAGGGATA+AGG | 0.530800 | 5_1:-47441180 | None:intergenic |
| GCTACTTTATGCCATCGATC+CGG | 0.541949 | 5_1:-47441869 | None:intergenic |
| TAACAAATAAAACTTTAAAG+AGG | 0.542250 | 5_1:+47443442 | Msa0733910:three_prime_UTR |
| TTATGTTCTGGTGGATTGAG+GGG | 0.544191 | 5_1:+47443208 | Msa0733910:three_prime_UTR |
| ATAAAGATACGCCGGATCGA+TGG | 0.544701 | 5_1:+47441858 | Msa0733910:CDS |
| GTGAATATCTTATGTTCTGG+TGG | 0.545144 | 5_1:+47443199 | Msa0733910:three_prime_UTR |
| TTGTTGCCGTCGAAGTTTGT+TGG | 0.545215 | 5_1:-47442902 | None:intergenic |
| ATTTGGAAAACCATGTTATG+TGG | 0.549103 | 5_1:-47443074 | None:intergenic |
| TCAAGTCAGTATAATGATTG+AGG | 0.560467 | 5_1:+47443285 | Msa0733910:three_prime_UTR |
| AGTCAGTATAATGATTGAGG+TGG | 0.575295 | 5_1:+47443288 | Msa0733910:three_prime_UTR |
| CTATGGACTTATTGGCATTG+CGG | 0.579525 | 5_1:-47443471 | None:intergenic |
| TTTGAAATTTAAAACTAGCG+AGG | 0.584085 | 5_1:+47443578 | Msa0733910:three_prime_UTR |
| TTCATAAGACAGCTTTCAGG+AGG | 0.585837 | 5_1:+47442738 | Msa0733910:CDS |
| CTCTTCTGGAGTCCATTGTG+TGG | 0.588727 | 5_1:-47441801 | None:intergenic |
| AATTTGGAAAGCAGTTGAGA+AGG | 0.592793 | 5_1:-47441195 | None:intergenic |
| AAAGTAGCTGAAATGATACC+AGG | 0.595280 | 5_1:+47441884 | Msa0733910:CDS |
| GTCTTCTTATCCACATAACA+TGG | 0.600765 | 5_1:+47443064 | Msa0733910:CDS |
| GTCAGTATAATGATTGAGGT+GGG | 0.605498 | 5_1:+47443289 | Msa0733910:three_prime_UTR |
| AAAACTTGATAAGATGAAGT+GGG | 0.612600 | 5_1:+47441712 | Msa0733910:exon |
| GGCCTAAAGAAGTATGGCAA+AGG | 0.616426 | 5_1:+47442639 | Msa0733910:CDS |
| TTTGTGTGTATGATGCAGGA+GGG | 0.617317 | 5_1:-47441748 | None:intergenic |
| AAAGGAAGAAAGGAGTGCCA+TGG | 0.621552 | 5_1:+47442104 | Msa0733910:CDS |
| TGAAATGATACCAGGAAAGA+CGG | 0.622184 | 5_1:+47441892 | Msa0733910:CDS |
| TGGCATATCAACTTACAGGA+AGG | 0.632783 | 5_1:+47443401 | Msa0733910:three_prime_UTR |
| ATGATACCAGGAAAGACGGT+CGG | 0.635685 | 5_1:+47441896 | Msa0733910:CDS |
| ATTTATGTAGCAGAAAAGCA+AGG | 0.637421 | 5_1:-47441106 | None:intergenic |
| TTTCAGGAGGAAAAGACAAG+AGG | 0.650765 | 5_1:+47442751 | Msa0733910:CDS |
| AACAAAACAGAGGAAAACAG+AGG | 0.650998 | 5_1:-47441610 | None:intergenic |
| GCAGCACCAACAAACTTCGA+CGG | 0.651047 | 5_1:+47442896 | Msa0733910:CDS |
| AAATTTGAATAGGGAAACAG+AGG | 0.653082 | 5_1:-47441640 | None:intergenic |
| TTGAGTGTTAAAGTGCATGC+AGG | 0.655521 | 5_1:-47443266 | None:intergenic |
| AGGAAAACAGAACAAAACAG+AGG | 0.657890 | 5_1:-47441620 | None:intergenic |
| ATGTCTGTAATATAGAAGCT+GGG | 0.666658 | 5_1:+47441954 | Msa0733910:CDS |
| GAAGTAGGAGTATTATAACC+AGG | 0.672487 | 5_1:-47441989 | None:intergenic |
| AAGATAACATGACCACACAA+TGG | 0.675526 | 5_1:+47441789 | Msa0733910:CDS |
| AGTTCATGATAAAGATACGC+CGG | 0.676724 | 5_1:+47441850 | Msa0733910:CDS |
| GAAAGTAACATAGAATTCTG+CGG | 0.686589 | 5_1:-47442864 | None:intergenic |
| ACTTGTTCTTCAGAAGACAC+CGG | 0.691433 | 5_1:+47442825 | Msa0733910:CDS |
| TCGTAGGAGTTAAAACCATG+AGG | 0.695559 | 5_1:-47442996 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTATAAGCAATTTATTTTT+TGG | + | chr5_1:47441304-47441323 | Msa0733910:five_prime_UTR | 10.0% |
| !!! | TTATAAGCAATTTATTTTTT+GGG | + | chr5_1:47441305-47441324 | Msa0733910:five_prime_UTR | 10.0% |
| !!! | TTTTTTTTTAGTGAGAAAAT+AGG | - | chr5_1:47441259-47441278 | None:intergenic | 15.0% |
| !!! | AATTGATTTTAGATCTTAAA+AGG | + | chr5_1:47441355-47441374 | Msa0733910:five_prime_UTR | 15.0% |
| !!! | ATTGATTTTAGATCTTAAAA+GGG | + | chr5_1:47441356-47441375 | Msa0733910:five_prime_UTR | 15.0% |
| !! | ATTATTATCTCTTATCTAAT+TGG | - | chr5_1:47441404-47441423 | None:intergenic | 15.0% |
| !!! | AAAACTCTAAAATTTGAATA+GGG | - | chr5_1:47441652-47441671 | None:intergenic | 15.0% |
| !! | ATAACAAAAACAAATACAAA+AGG | - | chr5_1:47442159-47442178 | None:intergenic | 15.0% |
| !!! | TTAGTATTTTTTCTTTACTA+GGG | + | chr5_1:47442221-47442240 | Msa0733910:intron | 15.0% |
| !!! | TTAAAATTTTGGTTAATTCT+TGG | + | chr5_1:47443381-47443400 | Msa0733910:three_prime_UTR | 15.0% |
| !!! | TAACAAATAAAACTTTAAAG+AGG | + | chr5_1:47443442-47443461 | Msa0733910:three_prime_UTR | 15.0% |
| !!! | GGAAAAATAACAGTTTTTTT+TGG | + | chr5_1:47441081-47441100 | Msa0733910:five_prime_UTR | 20.0% |
| !!! | GAAAACTCTAAAATTTGAAT+AGG | - | chr5_1:47441653-47441672 | None:intergenic | 20.0% |
| !!! | TAGAGTTTTCATTGAATTTT+TGG | + | chr5_1:47441663-47441682 | Msa0733910:five_prime_UTR | 20.0% |
| !!! | AGAGTTTTCATTGAATTTTT+GGG | + | chr5_1:47441664-47441683 | Msa0733910:five_prime_UTR | 20.0% |
| !!! | GTTAGTATTTTTTCTTTACT+AGG | + | chr5_1:47442220-47442239 | Msa0733910:intron | 20.0% |
| !! | ATATCATCTTAAGTTAGAAT+AGG | + | chr5_1:47442521-47442540 | Msa0733910:intron | 20.0% |
| !! | AAATATATTCCAACTTAAGA+TGG | - | chr5_1:47442599-47442618 | None:intergenic | 20.0% |
| !! | GTTAATCTTTCAGAAAAAAT+TGG | + | chr5_1:47442801-47442820 | Msa0733910:CDS | 20.0% |
| !!! | AAAATTTTAACACATGTCTT+CGG | - | chr5_1:47443371-47443390 | None:intergenic | 20.0% |
| ! | TCAGCACACAAAAAAAAAAA+AGG | - | chr5_1:47441011-47441030 | None:intergenic | 25.0% |
| !!! | TGTTTCTTTTTTTGTTGCTA+AGG | + | chr5_1:47441049-47441068 | Msa0733910:five_prime_UTR | 25.0% |
| ! | TTGTTGCTAAGGTATAAAAA+AGG | + | chr5_1:47441060-47441079 | Msa0733910:five_prime_UTR | 25.0% |
| !!! | TCTCATTTTTTTGATCAAGT+GGG | + | chr5_1:47441448-47441467 | Msa0733910:five_prime_UTR | 25.0% |
| ! | TTCCTTTCAAAAAATTCTTG+TGG | + | chr5_1:47441538-47441557 | Msa0733910:five_prime_UTR | 25.0% |
| !!! | TACCACAAGAATTTTTTGAA+AGG | - | chr5_1:47441543-47441562 | None:intergenic | 25.0% |
| ! | AAAACTTGATAAGATGAAGT+GGG | + | chr5_1:47441712-47441731 | Msa0733910:exon | 25.0% |
| !! | TCAAATATTTTGTTCTCTTC+TGG | - | chr5_1:47441818-47441837 | None:intergenic | 25.0% |
| !! | TTAAGAAAGCATAGGATTAA+AGG | + | chr5_1:47442341-47442360 | Msa0733910:intron | 25.0% |
| !! | TAAGAAAGCATAGGATTAAA+GGG | + | chr5_1:47442342-47442361 | Msa0733910:intron | 25.0% |
| !!! | ATGTTTTTTAGCTTTCACAT+AGG | + | chr5_1:47442406-47442425 | Msa0733910:intron | 25.0% |
| ! | GAATAGGTTATGATATAAGT+TGG | + | chr5_1:47442537-47442556 | Msa0733910:intron | 25.0% |
| !!! | ATGATATAAGTTGGTTTTGT+AGG | + | chr5_1:47442546-47442565 | Msa0733910:intron | 25.0% |
| !!! | TGATATAAGTTGGTTTTGTA+GGG | + | chr5_1:47442547-47442566 | Msa0733910:intron | 25.0% |
| !! | TTATGAAATACTTTTGAGCA+TGG | - | chr5_1:47442725-47442744 | None:intergenic | 25.0% |
| ! | AACATTATTCACATGCATAA+AGG | + | chr5_1:47443111-47443130 | Msa0733910:CDS | 25.0% |
| !! | GATATTCACATATACCTTTT+GGG | - | chr5_1:47443188-47443207 | None:intergenic | 25.0% |
| !! | AGATATTCACATATACCTTT+TGG | - | chr5_1:47443189-47443208 | None:intergenic | 25.0% |
| ! | TATGTGAATATCTTATGTTC+TGG | + | chr5_1:47443196-47443215 | Msa0733910:three_prime_UTR | 25.0% |
| ! | TCTTATATCATTGTCAATCA+AGG | - | chr5_1:47443338-47443357 | None:intergenic | 25.0% |
| !! | GAAGACATGTGTTAAAATTT+TGG | + | chr5_1:47443370-47443389 | Msa0733910:three_prime_UTR | 25.0% |
| !!! | ATTTCTAGTGAAGTTTATCA+TGG | + | chr5_1:47443533-47443552 | Msa0733910:three_prime_UTR | 25.0% |
| !! | TTTGAAATTTAAAACTAGCG+AGG | + | chr5_1:47443578-47443597 | Msa0733910:three_prime_UTR | 25.0% |
| !!! | TTTTTTTTTGTGTGCTGAGT+TGG | + | chr5_1:47441013-47441032 | Msa0733910:five_prime_UTR | 30.0% |
| ATTTATGTAGCAGAAAAGCA+AGG | - | chr5_1:47441109-47441128 | None:intergenic | 30.0% | |
| !!! | CTCTCATTTTTTTGATCAAG+TGG | + | chr5_1:47441447-47441466 | Msa0733910:five_prime_UTR | 30.0% |
| AGGAAAAAAAATGAGAGCAA+AGG | - | chr5_1:47441575-47441594 | None:intergenic | 30.0% | |
| AAATTTGAATAGGGAAACAG+AGG | - | chr5_1:47441643-47441662 | None:intergenic | 30.0% | |
| ! | GTTTTCACAAGATCAAACTA+TGG | - | chr5_1:47441697-47441716 | None:intergenic | 30.0% |
| GAAAACTTGATAAGATGAAG+TGG | + | chr5_1:47441711-47441730 | Msa0733910:exon | 30.0% | |
| TGATGTGATGAGACAATATA+AGG | + | chr5_1:47441919-47441938 | Msa0733910:CDS | 30.0% | |
| ATGTCTGTAATATAGAAGCT+GGG | + | chr5_1:47441954-47441973 | Msa0733910:CDS | 30.0% | |
| ! | TTCACCTTTTACCTTAGATT+GGG | + | chr5_1:47442009-47442028 | Msa0733910:CDS | 30.0% |
| TCTGGTTATGATGAATTTAG+AGG | + | chr5_1:47442040-47442059 | Msa0733910:CDS | 30.0% | |
| TATGATGAATTTAGAGGAAG+TGG | + | chr5_1:47442046-47442065 | Msa0733910:CDS | 30.0% | |
| TTAAAGGGTGGAATTTACAA+AGG | + | chr5_1:47442357-47442376 | Msa0733910:intron | 30.0% | |
| TACAAAGGTAATTTAGACCT+AGG | + | chr5_1:47442372-47442391 | Msa0733910:intron | 30.0% | |
| CCTTACAAAATCATCTTGTA+AGG | - | chr5_1:47442478-47442497 | None:intergenic | 30.0% | |
| ! | CCTTACAAGATGATTTTGTA+AGG | + | chr5_1:47442475-47442494 | Msa0733910:intron | 30.0% |
| ! | AAGATGATATTCGAGGATTT+TGG | - | chr5_1:47442511-47442530 | None:intergenic | 30.0% |
| CTAACTTAAGATGATATTCG+AGG | - | chr5_1:47442518-47442537 | None:intergenic | 30.0% | |
| TATTTCATAAGACAGCTTTC+AGG | + | chr5_1:47442735-47442754 | Msa0733910:CDS | 30.0% | |
| GAAAGTAACATAGAATTCTG+CGG | - | chr5_1:47442867-47442886 | None:intergenic | 30.0% | |
| CAAGACCAAAATCTTCAAAA+AGG | + | chr5_1:47443029-47443048 | Msa0733910:CDS | 30.0% | |
| !! | CAAGACCTTTTTGAAGATTT+TGG | - | chr5_1:47443037-47443056 | None:intergenic | 30.0% |
| ATTTGGAAAACCATGTTATG+TGG | - | chr5_1:47443077-47443096 | None:intergenic | 30.0% | |
| TCAAGTCAGTATAATGATTG+AGG | + | chr5_1:47443285-47443304 | Msa0733910:three_prime_UTR | 30.0% | |
| AATCAACACTATGGACTTAT+TGG | - | chr5_1:47443482-47443501 | None:intergenic | 30.0% | |
| !!! | AAGTCCATAGTGTTGATTTT+TGG | + | chr5_1:47443484-47443503 | Msa0733910:three_prime_UTR | 30.0% |
| !!! | AGTCCATAGTGTTGATTTTT+GGG | + | chr5_1:47443485-47443504 | Msa0733910:three_prime_UTR | 30.0% |
| !!! | TCTCTCTGCTGTTTTCTAAT+TGG | + | chr5_1:47441136-47441155 | Msa0733910:five_prime_UTR | 35.0% |
| AATTTGGAAAGCAGTTGAGA+AGG | - | chr5_1:47441198-47441217 | None:intergenic | 35.0% | |
| TTCTCAACTGCTTTCCAAAT+TGG | + | chr5_1:47441197-47441216 | Msa0733910:five_prime_UTR | 35.0% | |
| TCTCAACTGCTTTCCAAATT+GGG | + | chr5_1:47441198-47441217 | Msa0733910:five_prime_UTR | 35.0% | |
| CTTGAAAACTTAGCCCAATT+TGG | - | chr5_1:47441214-47441233 | None:intergenic | 35.0% | |
| AAAAATGAGAGCAAAGGTAG+AGG | - | chr5_1:47441569-47441588 | None:intergenic | 35.0% | |
| AACAAAACAGAGGAAAACAG+AGG | - | chr5_1:47441613-47441632 | None:intergenic | 35.0% | |
| AGGAAAACAGAACAAAACAG+AGG | - | chr5_1:47441623-47441642 | None:intergenic | 35.0% | |
| TGATAAGATGAAGTGGGAAA+TGG | + | chr5_1:47441718-47441737 | Msa0733910:exon | 35.0% | |
| CATACACACAAAACTCCAAT+TGG | + | chr5_1:47441759-47441778 | Msa0733910:CDS | 35.0% | |
| ACAAAACTCCAATTGGTGTA+TGG | + | chr5_1:47441766-47441785 | Msa0733910:CDS | 35.0% | |
| GTTATCTTCCATACACCAAT+TGG | - | chr5_1:47441777-47441796 | None:intergenic | 35.0% | |
| AAGATAACATGACCACACAA+TGG | + | chr5_1:47441789-47441808 | Msa0733910:CDS | 35.0% | |
| AGTTCATGATAAAGATACGC+CGG | + | chr5_1:47441850-47441869 | Msa0733910:CDS | 35.0% | |
| AAAGTAGCTGAAATGATACC+AGG | + | chr5_1:47441884-47441903 | Msa0733910:CDS | 35.0% | |
| TGAAATGATACCAGGAAAGA+CGG | + | chr5_1:47441892-47441911 | Msa0733910:CDS | 35.0% | |
| GATGTCTGTAATATAGAAGC+TGG | + | chr5_1:47441953-47441972 | Msa0733910:CDS | 35.0% | |
| !! | GAAGTAGGAGTATTATAACC+AGG | - | chr5_1:47441992-47442011 | None:intergenic | 35.0% |
| ! | TCTAAGGTAAAAGGTGAAGT+AGG | - | chr5_1:47442007-47442026 | None:intergenic | 35.0% |
| ! | CTTCACCTTTTACCTTAGAT+TGG | + | chr5_1:47442008-47442027 | Msa0733910:CDS | 35.0% |
| CTATAACGATTAGCGCAAAT+CGG | + | chr5_1:47442258-47442277 | Msa0733910:intron | 35.0% | |
| AAAGGTAATTTAGACCTAGG+AGG | + | chr5_1:47442375-47442394 | Msa0733910:intron | 35.0% | |
| CAACTTAAGATGGCAACAAA+AGG | - | chr5_1:47442589-47442608 | None:intergenic | 35.0% | |
| ! | CTTTTGTTGCCATCTTAAGT+TGG | + | chr5_1:47442587-47442606 | Msa0733910:intron | 35.0% |
| !! | TCCTGCAGATTATTTCTACT+AGG | + | chr5_1:47442618-47442637 | Msa0733910:intron | 35.0% |
| GTCTTCTTATCCACATAACA+TGG | + | chr5_1:47443064-47443083 | Msa0733910:CDS | 35.0% | |
| GTTGTGATGAATGTTGCATT+TGG | - | chr5_1:47443094-47443113 | None:intergenic | 35.0% | |
| ! | AGTGTCTGAATTTTCCCAAA+AGG | + | chr5_1:47443171-47443190 | Msa0733910:three_prime_UTR | 35.0% |
| GTGAATATCTTATGTTCTGG+TGG | + | chr5_1:47443199-47443218 | Msa0733910:three_prime_UTR | 35.0% | |
| AGTCAGTATAATGATTGAGG+TGG | + | chr5_1:47443288-47443307 | Msa0733910:three_prime_UTR | 35.0% | |
| GTCAGTATAATGATTGAGGT+GGG | + | chr5_1:47443289-47443308 | Msa0733910:three_prime_UTR | 35.0% | |
| TTCTTGGCATATCAACTTAC+AGG | + | chr5_1:47443397-47443416 | Msa0733910:three_prime_UTR | 35.0% | |
| TCACCCAAAAATCAACACTA+TGG | - | chr5_1:47443491-47443510 | None:intergenic | 35.0% | |
| TGAGAAGGAAGAAAGGGATA+AGG | - | chr5_1:47441183-47441202 | None:intergenic | 40.0% | |
| AGCAGTTGAGAAGGAAGAAA+GGG | - | chr5_1:47441189-47441208 | None:intergenic | 40.0% | |
| AAGCAGTTGAGAAGGAAGAA+AGG | - | chr5_1:47441190-47441209 | None:intergenic | 40.0% | |
| AGAGGAAGATAAAGCAGAGA+AGG | - | chr5_1:47441595-47441614 | None:intergenic | 40.0% | |
| TTTGTGTGTATGATGCAGGA+GGG | - | chr5_1:47441751-47441770 | None:intergenic | 40.0% | |
| ! | TTTTGTGTGTATGATGCAGG+AGG | - | chr5_1:47441752-47441771 | None:intergenic | 40.0% |
| !! | GAGTTTTGTGTGTATGATGC+AGG | - | chr5_1:47441755-47441774 | None:intergenic | 40.0% |
| ! | GGAGTATTATAACCAGGAAC+TGG | - | chr5_1:47441986-47442005 | None:intergenic | 40.0% |
| ! | CTCACCCAATCTAAGGTAAA+AGG | - | chr5_1:47442016-47442035 | None:intergenic | 40.0% |
| TTGTGTTCTTCTTCAGTCCA+TGG | - | chr5_1:47442124-47442143 | None:intergenic | 40.0% | |
| CGATTTGCGCTAATCGTTAT+AGG | - | chr5_1:47442260-47442279 | None:intergenic | 40.0% | |
| ! | GAAAGCATAGGATTAAAGGG+TGG | + | chr5_1:47442345-47442364 | Msa0733910:intron | 40.0% |
| GTAATTTAGACCTAGGAGGT+AGG | + | chr5_1:47442379-47442398 | Msa0733910:intron | 40.0% | |
| AAACATCATTCCTACCTCCT+AGG | - | chr5_1:47442392-47442411 | None:intergenic | 40.0% | |
| GCCTAGTAGAAATAATCTGC+AGG | - | chr5_1:47442622-47442641 | None:intergenic | 40.0% | |
| CTACTAGGCCTAAAGAAGTA+TGG | + | chr5_1:47442633-47442652 | Msa0733910:CDS | 40.0% | |
| CACCTTTGCCATACTTCTTT+AGG | - | chr5_1:47442644-47442663 | None:intergenic | 40.0% | |
| ! | AGAAGTATGGCAAAGGTGAT+TGG | + | chr5_1:47442646-47442665 | Msa0733910:CDS | 40.0% |
| TTCATAAGACAGCTTTCAGG+AGG | + | chr5_1:47442738-47442757 | Msa0733910:CDS | 40.0% | |
| TTTCAGGAGGAAAAGACAAG+AGG | + | chr5_1:47442751-47442770 | Msa0733910:CDS | 40.0% | |
| ACTTGTTCTTCAGAAGACAC+CGG | + | chr5_1:47442825-47442844 | Msa0733910:CDS | 40.0% | |
| ! | ATGAAAACTTGCTCATGAGC+TGG | - | chr5_1:47442972-47442991 | None:intergenic | 40.0% |
| ! | AGCTCATGAGCAAGTTTTCA+TGG | + | chr5_1:47442971-47442990 | Msa0733910:CDS | 40.0% |
| ! | CAAGTTTTCATGGATCCTCA+TGG | + | chr5_1:47442981-47443000 | Msa0733910:CDS | 40.0% |
| TCGTAGGAGTTAAAACCATG+AGG | - | chr5_1:47442999-47443018 | None:intergenic | 40.0% | |
| !!! | TCATGGTTTTAACTCCTACG+AGG | + | chr5_1:47442998-47443017 | Msa0733910:CDS | 40.0% |
| !! | GTCTTGCATTTTAACCTCGT+AGG | - | chr5_1:47443015-47443034 | None:intergenic | 40.0% |
| !! | TCTTATGTTCTGGTGGATTG+AGG | + | chr5_1:47443206-47443225 | Msa0733910:three_prime_UTR | 40.0% |
| !! | CTTATGTTCTGGTGGATTGA+GGG | + | chr5_1:47443207-47443226 | Msa0733910:three_prime_UTR | 40.0% |
| !! | TTATGTTCTGGTGGATTGAG+GGG | + | chr5_1:47443208-47443227 | Msa0733910:three_prime_UTR | 40.0% |
| TTGAGTGTTAAAGTGCATGC+AGG | - | chr5_1:47443269-47443288 | None:intergenic | 40.0% | |
| TGGCATATCAACTTACAGGA+AGG | + | chr5_1:47443401-47443420 | Msa0733910:three_prime_UTR | 40.0% | |
| CTATGGACTTATTGGCATTG+CGG | - | chr5_1:47443474-47443493 | None:intergenic | 40.0% | |
| ATAAAGATACGCCGGATCGA+TGG | + | chr5_1:47441858-47441877 | Msa0733910:CDS | 45.0% | |
| ! | GCTACTTTATGCCATCGATC+CGG | - | chr5_1:47441872-47441891 | None:intergenic | 45.0% |
| ATGATACCAGGAAAGACGGT+CGG | + | chr5_1:47441896-47441915 | Msa0733910:CDS | 45.0% | |
| AGAACTGCTCACCCAATCTA+AGG | - | chr5_1:47442023-47442042 | None:intergenic | 45.0% | |
| TTAGATTGGGTGAGCAGTTC+TGG | + | chr5_1:47442022-47442041 | Msa0733910:CDS | 45.0% | |
| TTTAGTTAGAGCTCCTGAGC+AGG | + | chr5_1:47442081-47442100 | Msa0733910:CDS | 45.0% | |
| !! | AAAGGAAGAAAGGAGTGCCA+TGG | + | chr5_1:47442104-47442123 | Msa0733910:CDS | 45.0% |
| ! | ATCGGTTGAGGTTCTAGTGT+TGG | + | chr5_1:47442276-47442295 | Msa0733910:intron | 45.0% |
| ! | TCGTGCGCTTAAGAAAGCAT+AGG | + | chr5_1:47442333-47442352 | Msa0733910:intron | 45.0% |
| ! | GGCCTAAAGAAGTATGGCAA+AGG | + | chr5_1:47442639-47442658 | Msa0733910:CDS | 45.0% |
| CGGTGAAGTGGATCTATTAC+CGG | - | chr5_1:47442847-47442866 | None:intergenic | 45.0% | |
| CATAGAATTCTGCGGTGAAG+TGG | - | chr5_1:47442859-47442878 | None:intergenic | 45.0% | |
| TTGTTGCCGTCGAAGTTTGT+TGG | - | chr5_1:47442905-47442924 | None:intergenic | 45.0% | |
| ! | CGACGGCAACAAATTTTCGT+TGG | + | chr5_1:47442913-47442932 | Msa0733910:CDS | 45.0% |
| ! | CGGCAACAAATTTTCGTTGG+AGG | + | chr5_1:47442916-47442935 | Msa0733910:CDS | 45.0% |
| TGCTCATGAGCTGGATTGAA+AGG | - | chr5_1:47442963-47442982 | None:intergenic | 45.0% | |
| AATGATTGAGGTGGGTGAGA+AGG | + | chr5_1:47443297-47443316 | Msa0733910:three_prime_UTR | 45.0% | |
| !! | CTCTTCTGGAGTCCATTGTG+TGG | - | chr5_1:47441804-47441823 | None:intergenic | 50.0% |
| TTAGAGCTCCTGAGCAGGAA+AGG | + | chr5_1:47442086-47442105 | Msa0733910:CDS | 50.0% | |
| CCTTTCTTCCTTTCCTGCTC+AGG | - | chr5_1:47442097-47442116 | None:intergenic | 50.0% | |
| CCTGAGCAGGAAAGGAAGAA+AGG | + | chr5_1:47442094-47442113 | Msa0733910:CDS | 50.0% | |
| CGATTAGCGCAAATCGGTTG+AGG | + | chr5_1:47442264-47442283 | Msa0733910:intron | 50.0% | |
| !! | GCATGGCTTGCTACTTGAGT+TGG | - | chr5_1:47442708-47442727 | None:intergenic | 50.0% |
| !! | AAGTTTGTTGGTGCTGCTGC+TGG | - | chr5_1:47442893-47442912 | None:intergenic | 50.0% |
| GCAGCACCAACAAACTTCGA+CGG | + | chr5_1:47442896-47442915 | Msa0733910:CDS | 50.0% | |
| ACATCACCGACCGTCTTTCC+TGG | - | chr5_1:47441905-47441924 | None:intergenic | 55.0% | |
| !! | GCTGGGTTGATTCCAGTTCC+TGG | + | chr5_1:47441971-47441990 | Msa0733910:CDS | 55.0% |
| ! | TTGAGGGGAGCGTGCGTTGA+TGG | + | chr5_1:47443223-47443242 | Msa0733910:three_prime_UTR | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 47440998 | 47443676 | 47440998 | ID=Msa0733910;Name=Msa0733910 |
| chr5_1 | mRNA | 47440998 | 47443676 | 47440998 | ID=Msa0733910-mRNA-1;Parent=Msa0733910;Name=Msa0733910-mRNA-1;_AED=0.00;_eAED=0.00;_QI=727|1|1|1|1|1|2|546|307 |
| chr5_1 | exon | 47440998 | 47442143 | 47440998 | ID=Msa0733910-mRNA-1:exon:13563;Parent=Msa0733910-mRNA-1 |
| chr5_1 | exon | 47442626 | 47443676 | 47442626 | ID=Msa0733910-mRNA-1:exon:13564;Parent=Msa0733910-mRNA-1 |
| chr5_1 | five_prime_UTR | 47440998 | 47441724 | 47440998 | ID=Msa0733910-mRNA-1:five_prime_utr;Parent=Msa0733910-mRNA-1 |
| chr5_1 | CDS | 47441725 | 47442143 | 47441725 | ID=Msa0733910-mRNA-1:cds;Parent=Msa0733910-mRNA-1 |
| chr5_1 | CDS | 47442626 | 47443130 | 47442626 | ID=Msa0733910-mRNA-1:cds;Parent=Msa0733910-mRNA-1 |
| chr5_1 | three_prime_UTR | 47443131 | 47443676 | 47443131 | ID=Msa0733910-mRNA-1:three_prime_utr;Parent=Msa0733910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
