AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0734110

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734110 MtrunA17_Chr5g0429661 94.366 355 18 2 1 353 1 355 0.0 688
Msa0734110 MtrunA17_Chr3g0104501 55.738 183 57 8 11 172 5 184 1.99e-57 185
Msa0734110 MtrunA17_Chr4g0058991 60.563 142 49 1 109 250 197 331 3.27e-57 192
Msa0734110 MtrunA17_Chr3g0117511 64.394 132 40 1 119 250 181 305 1.01e-55 188
Msa0734110 MtrunA17_Chr7g0228531 59.843 127 48 2 119 245 218 341 3.58e-49 171
Msa0734110 MtrunA17_Chr7g0228481 56.693 127 52 2 119 245 218 341 2.42e-43 155
Msa0734110 MtrunA17_Chr7g0238631 62.136 103 39 0 119 221 111 213 2.65e-40 149
Msa0734110 MtrunA17_Chr3g0104491 42.259 239 75 10 171 352 17 249 7.27e-40 142
Msa0734110 MtrunA17_Chr3g0139671 57.282 103 44 0 119 221 83 185 5.17e-38 144
Msa0734110 MtrunA17_Chr7g0228401 43.506 154 55 3 120 248 254 400 7.82e-38 141
Msa0734110 MtrunA17_Chr1g0177901 45.638 149 72 3 132 279 5 145 1.43e-37 134
Msa0734110 MtrunA17_Chr7g0233061 51.128 133 58 2 120 252 179 304 1.95e-37 137
Msa0734110 MtrunA17_Chr1g0157731 56.311 103 45 0 119 221 89 191 4.13e-37 142
Msa0734110 MtrunA17_Chr5g0397841 57.732 97 41 0 119 215 108 204 1.51e-34 132
Msa0734110 MtrunA17_Chr5g0397841 35.780 109 65 3 111 214 44 152 3.57e-11 64.3
Msa0734110 MtrunA17_Chr4g0008551 53.398 103 48 0 120 222 37 139 1.63e-34 129
Msa0734110 MtrunA17_Chr3g0133601 50.980 102 50 0 120 221 36 137 8.95e-33 122
Msa0734110 MtrunA17_Chr4g0053431 50.962 104 51 0 120 223 4 107 1.41e-32 122
Msa0734110 MtrunA17_Chr2g0323351 34.298 242 122 9 119 331 12 245 4.56e-31 118
Msa0734110 MtrunA17_Chr5g0401731 48.077 104 54 0 120 223 14 117 6.64e-31 119
Msa0734110 MtrunA17_Chr4g0022901 50.485 103 48 2 121 221 15 116 1.72e-30 117
Msa0734110 MtrunA17_Chr4g0042501 46.667 120 64 0 102 221 86 205 1.80e-30 120
Msa0734110 MtrunA17_Chr8g0385321 48.113 106 53 2 121 224 14 119 8.20e-30 116
Msa0734110 MtrunA17_Chr4g0022911 45.000 120 63 2 121 238 15 133 2.02e-29 114
Msa0734110 MtrunA17_Chr5g0417621 46.032 126 68 0 102 227 115 240 2.46e-29 117
Msa0734110 MtrunA17_Chr4g0022931 47.458 118 58 3 121 235 15 131 7.48e-29 112
Msa0734110 MtrunA17_Chr5g0434571 43.226 155 68 5 89 239 26 164 1.18e-28 114
Msa0734110 MtrunA17_Chr6g0454921 44.231 104 58 0 120 223 14 117 1.27e-28 110
Msa0734110 MtrunA17_Chr8g0342541 48.544 103 50 2 121 221 14 115 1.61e-28 113
Msa0734110 MtrunA17_Chr4g0044421 38.926 149 87 2 121 268 14 159 1.75e-28 109
Msa0734110 MtrunA17_Chr5g0437321 47.959 98 51 0 120 217 18 115 1.77e-28 112
Msa0734110 MtrunA17_Chr6g0480581 49.515 103 52 0 118 220 1 103 2.11e-28 110
Msa0734110 MtrunA17_Chr5g0397231 48.454 97 49 1 121 216 14 110 2.52e-28 112
Msa0734110 MtrunA17_Chr2g0281071 43.966 116 64 1 107 221 1 116 2.67e-28 112
Msa0734110 MtrunA17_Chr5g0435101 48.544 103 50 2 121 221 13 114 3.20e-28 109
Msa0734110 MtrunA17_Chr6g0452271 34.615 182 107 4 121 301 14 184 3.48e-28 112
Msa0734110 MtrunA17_Chr5g0410961 45.098 102 55 1 121 221 14 115 3.51e-28 112
Msa0734110 MtrunA17_Chr4g0055981 47.573 103 53 1 115 216 51 153 3.56e-28 109
Msa0734110 MtrunA17_Chr3g0125801 39.759 166 86 2 111 268 6 165 4.31e-28 111
Msa0734110 MtrunA17_Chr8g0342521 49.515 103 49 2 121 221 14 115 4.64e-28 112
Msa0734110 MtrunA17_Chr1g0193801 46.154 104 55 1 119 221 12 115 4.98e-28 112
Msa0734110 MtrunA17_Chr3g0131121 38.816 152 74 4 121 264 14 154 5.15e-28 111
Msa0734110 MtrunA17_Chr4g0048511 44.444 117 62 2 107 221 1 116 5.27e-28 112
Msa0734110 MtrunA17_Chr1g0167661 35.865 237 123 11 119 344 12 230 5.28e-28 110
Msa0734110 MtrunA17_Chr4g0037141 36.095 169 93 4 121 275 14 181 5.82e-28 110
Msa0734110 MtrunA17_Chr4g0039971 45.763 118 60 3 106 221 1 116 7.99e-28 111
Msa0734110 MtrunA17_Chr3g0099131 52.830 106 46 3 119 221 41 145 8.32e-28 114
Msa0734110 MtrunA17_Chr3g0110351 50.476 105 49 2 119 221 12 115 1.23e-27 110
Msa0734110 MtrunA17_Chr4g0057031 48.544 103 50 2 121 221 14 115 1.28e-27 109
Msa0734110 MtrunA17_Chr2g0309911 45.631 103 53 2 121 221 13 114 1.55e-27 110
Msa0734110 MtrunA17_Chr3g0117091 45.714 105 54 2 119 221 12 115 1.80e-27 110
Msa0734110 MtrunA17_Chr6g0460661 47.525 101 53 0 121 221 16 116 1.94e-27 105
Msa0734110 MtrunA17_Chr3g0080861 49.057 106 50 3 118 220 36 140 2.43e-27 112
Msa0734110 MtrunA17_Chr1g0193371 45.714 105 54 2 119 221 12 115 2.48e-27 110
Msa0734110 MtrunA17_Chr1g0211161 45.714 105 54 2 119 221 13 116 2.59e-27 107
Msa0734110 MtrunA17_Chr4g0058631 39.041 146 78 4 119 263 12 147 2.62e-27 110
Msa0734110 MtrunA17_Chr2g0328771 42.400 125 67 3 119 239 20 143 2.72e-27 109
Msa0734110 MtrunA17_Chr3g0115821 47.619 105 52 2 119 221 12 115 2.93e-27 110
Msa0734110 MtrunA17_Chr8g0342481 46.602 103 53 1 121 221 14 116 2.94e-27 110
Msa0734110 MtrunA17_Chr2g0330041 45.631 103 53 2 121 221 14 115 3.12e-27 110
Msa0734110 MtrunA17_Chr8g0349261 47.748 111 56 1 107 215 1 111 3.53e-27 108
Msa0734110 MtrunA17_Chr7g0254261 40.909 176 88 3 116 277 84 257 3.71e-27 110
Msa0734110 MtrunA17_Chr3g0103281 45.763 118 62 2 107 223 1 117 3.74e-27 109
Msa0734110 MtrunA17_Chr4g0032401 37.908 153 91 3 112 260 10 162 4.20e-27 109
Msa0734110 MtrunA17_Chr8g0387421 46.392 97 51 1 121 216 14 110 4.28e-27 108
Msa0734110 MtrunA17_Chr8g0354661 48.113 106 52 2 118 221 36 140 4.53e-27 112
Msa0734110 MtrunA17_Chr6g0460671 36.170 188 103 4 97 283 81 252 5.49e-27 109
Msa0734110 MtrunA17_Chr1g0168661 52.000 100 45 2 117 214 19 117 5.56e-27 107
Msa0734110 MtrunA17_Chr1g0186061 49.038 104 50 2 121 222 22 124 6.22e-27 107
Msa0734110 MtrunA17_Chr4g0042671 41.538 130 70 2 119 242 12 141 7.47e-27 109
Msa0734110 MtrunA17_Chr4g0030881 42.500 120 61 2 115 226 3 122 7.50e-27 107
Msa0734110 MtrunA17_Chr3g0088461 41.880 117 67 1 106 221 9 125 7.97e-27 108
Msa0734110 MtrunA17_Chr7g0271241 49.495 99 47 2 119 215 12 109 8.63e-27 109
Msa0734110 MtrunA17_Chr4g0022891 40.625 128 72 3 121 246 14 139 8.74e-27 106
Msa0734110 MtrunA17_Chr7g0270891 44.231 104 57 1 119 221 12 115 1.08e-26 108
Msa0734110 MtrunA17_Chr4g0070611 30.677 251 142 7 117 352 10 243 1.72e-26 107
Msa0734110 MtrunA17_Chr8g0346561 48.485 99 50 1 119 216 12 110 2.49e-26 106
Msa0734110 MtrunA17_Chr7g0217741 49.000 100 48 2 119 216 12 110 4.01e-26 106
Msa0734110 MtrunA17_Chr5g0395281 44.762 105 55 2 119 221 12 115 4.61e-26 105
Msa0734110 MtrunA17_Chr7g0261281 45.600 125 62 4 119 238 12 135 7.96e-26 104
Msa0734110 MtrunA17_Chr1g0209661 44.231 104 57 1 119 221 27 130 8.82e-26 105
Msa0734110 MtrunA17_Chr7g0228231 43.220 118 64 2 121 237 16 131 1.23e-25 102
Msa0734110 MtrunA17_Chr5g0417821 45.794 107 57 1 119 224 7 113 1.40e-25 104
Msa0734110 MtrunA17_Chr4g0068061 48.571 105 51 2 119 221 12 115 1.90e-25 104
Msa0734110 MtrunA17_Chr4g0070641 47.059 102 53 1 115 215 8 109 1.90e-25 100
Msa0734110 MtrunA17_Chr2g0323411 45.192 104 56 1 119 221 12 115 2.41e-25 104
Msa0734110 MtrunA17_Chr7g0275911 46.465 99 52 1 119 216 12 110 2.64e-25 102
Msa0734110 MtrunA17_Chr7g0228891 46.667 105 53 2 119 221 12 115 2.96e-25 103
Msa0734110 MtrunA17_Chr2g0327821 43.750 112 60 2 117 226 4 114 3.09e-25 102
Msa0734110 MtrunA17_Chr7g0240821 50.526 95 44 2 124 216 6 99 3.49e-25 101
Msa0734110 MtrunA17_Chr1g0154031 46.667 105 53 2 119 221 76 179 3.85e-25 105
Msa0734110 MtrunA17_Chr1g0167691 31.818 242 143 8 119 347 12 244 4.96e-25 102
Msa0734110 MtrunA17_Chr1g0187761 41.958 143 71 4 119 259 12 144 9.21e-25 101
Msa0734110 MtrunA17_Chr1g0192411 47.115 104 54 1 119 221 12 115 9.27e-25 103
Msa0734110 MtrunA17_Chr6g0450101 51.042 96 44 2 121 214 16 110 1.51e-24 99.4
Msa0734110 MtrunA17_Chr8g0343831 48.958 96 48 1 121 215 10 105 2.19e-24 100
Msa0734110 MtrunA17_Chr1g0180391 47.959 98 48 2 119 214 19 115 2.53e-24 99.4
Msa0734110 MtrunA17_Chr1g0203411 47.423 97 48 2 121 215 14 109 2.96e-24 100
Msa0734110 MtrunA17_Chr4g0013361 40.152 132 76 3 121 250 12 142 6.15e-24 99.8
Msa0734110 MtrunA17_Chr8g0334881 44.545 110 59 2 113 220 4 113 7.03e-24 100
Msa0734110 MtrunA17_Chr2g0327351 38.776 147 79 4 121 258 14 158 7.50e-24 100
Msa0734110 MtrunA17_Chr1g0152011 40.000 120 68 3 121 236 14 133 8.36e-24 100
Msa0734110 MtrunA17_Chr6g0453471 44.231 104 57 1 119 221 12 115 9.66e-24 100
Msa0734110 MtrunA17_Chr1g0194301 34.375 160 100 3 113 270 27 183 1.47e-23 98.6
Msa0734110 MtrunA17_Chr4g0022881 42.857 98 53 2 121 216 14 110 2.00e-23 97.1
Msa0734110 MtrunA17_Chr4g0060721 41.964 112 64 1 121 231 15 126 2.64e-23 99.0
Msa0734110 MtrunA17_Chr2g0311221 42.727 110 61 2 108 216 4 112 2.67e-23 99.0
Msa0734110 MtrunA17_Chr5g0400821 41.228 114 65 2 121 232 14 127 2.88e-23 98.2
Msa0734110 MtrunA17_Chr7g0233151 57.333 75 30 1 171 245 1 73 2.90e-23 95.1
Msa0734110 MtrunA17_Chr2g0322521 52.830 106 46 3 119 221 29 133 3.11e-23 99.8
Msa0734110 MtrunA17_Chr5g0434931 38.938 113 68 1 114 225 30 142 3.45e-23 97.4
Msa0734110 MtrunA17_Chr3g0121241 44.444 99 54 1 119 216 42 140 3.52e-23 97.8
Msa0734110 MtrunA17_Chr7g0274581 44.792 96 52 1 121 215 14 109 3.95e-23 95.5
Msa0734110 MtrunA17_Chr4g0054391 36.641 131 80 3 107 235 1 130 4.52e-23 97.4
Msa0734110 MtrunA17_Chr5g0441141 45.631 103 52 3 121 220 14 115 6.60e-23 96.7
Msa0734110 MtrunA17_Chr5g0440761 45.631 103 52 3 121 220 14 115 7.35e-23 96.3
Msa0734110 MtrunA17_Chr5g0440781 45.631 103 52 3 121 220 14 115 8.46e-23 94.4
Msa0734110 MtrunA17_Chr7g0217221 41.880 117 62 2 117 232 10 121 1.15e-22 95.9
Msa0734110 MtrunA17_Chr7g0228991 43.299 97 54 1 121 216 31 127 1.36e-22 95.9
Msa0734110 MtrunA17_Chr4g0028311 39.316 117 68 3 107 221 1 116 1.48e-22 96.7
Msa0734110 MtrunA17_Chr1g0194951 47.619 105 52 2 119 221 12 115 2.56e-22 96.7
Msa0734110 MtrunA17_Chr5g0441131 43.137 102 56 2 121 220 11 112 2.86e-22 92.8
Msa0734110 MtrunA17_Chr5g0434911 40.566 106 62 1 121 225 23 128 2.90e-22 94.7
Msa0734110 MtrunA17_Chr3g0135311 42.478 113 62 3 121 231 14 125 2.95e-22 96.3
Msa0734110 MtrunA17_Chr1g0194291 39.683 126 72 2 111 235 13 135 3.49e-22 94.4
Msa0734110 MtrunA17_Chr6g0453211 44.000 100 55 1 117 215 10 109 3.91e-22 95.5
Msa0734110 MtrunA17_Chr6g0470971 34.351 131 85 1 121 250 16 146 4.00e-22 94.7
Msa0734110 MtrunA17_Chr2g0293911 41.322 121 67 2 119 238 24 141 4.56e-22 95.5
Msa0734110 MtrunA17_Chr3g0092401 34.940 166 98 3 121 280 15 176 5.25e-22 94.7
Msa0734110 MtrunA17_Chr1g0151941 39.252 107 63 2 117 221 10 116 5.43e-22 93.6
Msa0734110 MtrunA17_Chr7g0220341 38.889 126 63 3 95 216 10 125 5.52e-22 94.0
Msa0734110 MtrunA17_Chr7g0247131 52.564 78 35 1 146 221 4 81 8.96e-22 93.2
Msa0734110 MtrunA17_Chr1g0203441 39.048 105 63 1 121 224 15 119 1.05e-21 93.2
Msa0734110 MtrunA17_Chr4g0068921 38.194 144 84 3 96 238 2 141 1.09e-21 91.3
Msa0734110 MtrunA17_Chr4g0046181 68.519 54 17 0 119 172 219 272 1.15e-21 93.6
Msa0734110 MtrunA17_Chr7g0264641 42.718 103 57 2 121 221 14 116 1.33e-21 92.8
Msa0734110 MtrunA17_Chr5g0434841 37.815 119 71 2 106 221 5 123 5.52e-21 92.0
Msa0734110 MtrunA17_Chr5g0434831 39.450 109 65 1 114 221 2 110 8.74e-21 89.0
Msa0734110 MtrunA17_Chr8g0360111 43.158 95 53 1 121 214 27 121 1.99e-20 89.4
Msa0734110 MtrunA17_Chr7g0254411 37.391 115 71 1 121 234 14 128 2.04e-20 90.9
Msa0734110 MtrunA17_Chr4g0072751 43.878 98 53 2 121 216 14 111 2.08e-20 90.9
Msa0734110 MtrunA17_Chr5g0416341 41.837 98 57 0 124 221 29 126 2.57e-20 91.7
Msa0734110 MtrunA17_Chr5g0421201 52.564 78 27 1 173 250 12 79 8.13e-20 85.9
Msa0734110 MtrunA17_Chr7g0269831 50.476 105 49 2 119 221 12 115 1.04e-19 89.0
Msa0734110 MtrunA17_Chr6g0487491 28.780 205 106 7 107 297 1 179 1.09e-19 87.4
Msa0734110 MtrunA17_Chr7g0233161 67.925 53 17 0 120 172 298 350 1.43e-19 88.6
Msa0734110 MtrunA17_Chr3g0099141 48.235 85 43 1 119 202 40 124 1.46e-19 84.0
Msa0734110 MtrunA17_Chr2g0323321 47.561 82 40 2 119 198 11 91 3.28e-19 82.0
Msa0734110 MtrunA17_Chr8g0362231 29.697 165 109 1 124 281 25 189 3.61e-19 88.2
Msa0734110 MtrunA17_Chr7g0238651 36.667 120 73 1 116 232 2 121 8.15e-19 86.7
Msa0734110 MtrunA17_Chr4g0042611 46.753 77 40 1 119 194 12 88 4.97e-18 78.2
Msa0734110 MtrunA17_Chr8g0342461 45.455 77 40 1 121 195 14 90 2.96e-17 77.8
Msa0734110 MtrunA17_Chr8g0342471 44.156 77 41 1 121 195 14 90 1.20e-16 75.9
Msa0734110 MtrunA17_Chr8g0342531 45.455 77 39 2 121 195 14 89 1.60e-16 76.3
Msa0734110 MtrunA17_Chr5g0395221 40.260 77 45 1 119 194 12 88 1.36e-15 71.2
Msa0734110 MtrunA17_Chr8g0342511 44.000 75 39 2 121 193 14 87 1.57e-15 71.6
Msa0734110 MtrunA17_Chr2g0294811 44.706 85 46 1 119 202 12 96 3.50e-15 71.2
Msa0734110 MtrunA17_Chr3g0093811 42.254 71 41 0 154 224 18 88 6.85e-15 73.9
Msa0734110 MtrunA17_Chr5g0434901 43.939 66 37 0 154 219 9 74 6.88e-15 70.5
Msa0734110 MtrunA17_Chr7g0229101 45.455 66 36 0 154 219 8 73 8.98e-15 72.4
Msa0734110 MtrunA17_Chr6g0483051 35.593 118 75 1 121 238 120 236 3.03e-14 73.9
Msa0734110 MtrunA17_Chr6g0483051 36.458 96 60 1 119 214 67 161 3.18e-13 70.9
Msa0734110 MtrunA17_Chr5g0425591 43.902 82 42 3 121 199 11 91 9.40e-14 66.6
Msa0734110 MtrunA17_Chr6g0453751 41.053 95 46 4 115 199 16 110 2.16e-13 66.6
Msa0734110 MtrunA17_Chr7g0229131 40.299 67 40 0 154 220 8 74 1.95e-12 65.1
Msa0734110 MtrunA17_Chr7g0274481 40.000 90 52 2 118 206 3 91 6.39e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0734110 AT5G58850.1 47.601 271 113 5 111 352 95 365 9.01e-68 219
Msa0734110 AT5G11050.1 46.570 277 108 7 110 352 94 364 1.32e-64 211
Msa0734110 AT4G18770.1 45.415 229 101 6 42 263 141 352 1.27e-59 198
Msa0734110 AT3G27785.1 63.448 145 48 2 109 252 177 317 2.90e-57 192
Msa0734110 AT5G40360.1 52.817 142 62 1 111 252 148 284 2.85e-48 166
Msa0734110 AT3G09370.1 61.538 104 40 0 119 222 128 231 8.72e-41 150
Msa0734110 AT3G09370.2 61.538 104 40 0 119 222 133 236 9.07e-41 150
Msa0734110 AT3G09370.3 61.538 104 40 0 119 222 141 244 9.81e-41 150
Msa0734110 AT5G02320.1 61.165 103 40 0 119 221 125 227 4.37e-40 149
Msa0734110 AT5G02320.2 61.165 103 40 0 119 221 125 227 4.37e-40 149
Msa0734110 AT5G02320.3 61.165 103 40 0 119 221 65 167 4.99e-40 147
Msa0734110 AT2G25230.1 49.242 132 60 1 121 252 26 150 5.53e-37 133
Msa0734110 AT5G11510.5 53.398 103 48 0 119 221 79 181 2.22e-36 140
Msa0734110 AT5G11510.2 53.398 103 48 0 119 221 79 181 2.36e-36 140
Msa0734110 AT5G11510.3 53.398 103 48 0 119 221 79 181 2.54e-36 140
Msa0734110 AT5G11510.1 53.398 103 48 0 119 221 79 181 2.54e-36 140
Msa0734110 AT5G11510.4 53.398 103 48 0 119 221 79 181 2.54e-36 140
Msa0734110 AT4G32730.5 53.398 103 48 0 119 221 85 187 1.85e-35 137
Msa0734110 AT4G32730.4 53.398 103 48 0 119 221 85 187 1.85e-35 137
Msa0734110 AT4G32730.3 53.398 103 48 0 119 221 85 187 1.85e-35 137
Msa0734110 AT4G32730.2 53.398 103 48 0 119 221 85 187 1.85e-35 137
Msa0734110 AT4G32730.1 53.398 103 48 0 119 221 85 187 2.16e-35 137
Msa0734110 AT5G40430.1 45.522 134 65 2 119 252 52 177 1.95e-33 125
Msa0734110 AT4G00540.2 47.945 146 72 2 119 260 101 246 1.07e-32 126
Msa0734110 AT4G00540.1 47.945 146 72 2 119 260 99 244 1.74e-32 126
Msa0734110 AT3G55730.1 51.961 102 49 0 120 221 55 156 2.54e-31 122
Msa0734110 AT1G17950.1 41.781 146 81 2 121 262 5 150 2.52e-30 116
Msa0734110 AT3G11440.2 51.852 108 50 2 118 223 40 147 2.61e-30 120
Msa0734110 AT1G69560.2 36.612 183 107 3 94 271 96 274 2.64e-30 118
Msa0734110 AT3G50060.1 46.154 104 56 0 120 223 5 108 3.05e-30 117
Msa0734110 AT1G69560.1 36.612 183 107 3 94 271 80 258 3.55e-30 118
Msa0734110 AT3G09230.1 50.980 102 50 0 120 221 54 155 4.23e-30 119
Msa0734110 AT3G11440.3 51.852 108 50 2 118 223 40 147 5.97e-30 120
Msa0734110 AT3G11440.4 51.852 108 50 2 118 223 40 147 5.97e-30 120
Msa0734110 AT3G11440.1 51.852 108 50 2 118 223 40 147 5.97e-30 120
Msa0734110 AT3G29020.1 49.123 114 55 1 113 223 57 170 1.29e-29 114
Msa0734110 AT5G67300.1 48.039 102 53 0 120 221 5 106 2.01e-29 115
Msa0734110 AT2G23290.1 46.018 113 59 1 111 223 5 115 2.56e-29 115
Msa0734110 AT4G37260.1 47.115 104 55 0 120 223 12 115 3.09e-29 115
Msa0734110 AT3G29020.2 49.123 114 55 1 113 223 59 172 4.90e-29 114
Msa0734110 AT4G26930.1 46.154 104 55 1 118 220 18 121 8.33e-29 115
Msa0734110 AT2G32460.1 45.385 130 62 4 97 223 1 124 1.32e-28 116
Msa0734110 AT2G32460.2 50.000 108 50 3 119 223 6 112 2.25e-28 115
Msa0734110 AT5G06100.1 50.000 108 52 2 118 223 31 138 2.33e-28 115
Msa0734110 AT3G28470.1 46.847 111 57 2 107 216 1 110 2.39e-28 112
Msa0734110 AT2G39880.1 49.020 102 52 0 120 221 49 150 2.87e-28 113
Msa0734110 AT1G74080.1 51.961 102 48 1 116 216 9 110 3.07e-28 112
Msa0734110 AT4G38620.1 47.573 103 51 2 121 221 14 115 4.63e-28 111
Msa0734110 AT1G63910.1 49.485 97 48 1 121 216 14 110 5.77e-28 112
Msa0734110 AT1G35515.1 47.059 102 53 1 121 221 14 115 5.95e-28 108
Msa0734110 AT1G26780.1 45.600 125 65 1 118 239 95 219 6.10e-28 110
Msa0734110 AT5G06100.5 50.000 108 52 2 118 223 31 138 6.18e-28 114
Msa0734110 AT5G06100.2 50.000 108 52 2 118 223 31 138 6.18e-28 114
Msa0734110 AT5G06100.3 50.000 108 52 2 118 223 31 138 6.18e-28 114
Msa0734110 AT5G06100.4 50.000 108 52 2 118 223 31 138 6.18e-28 114
Msa0734110 AT5G16770.4 47.115 104 54 1 119 221 12 115 7.30e-28 111
Msa0734110 AT5G16770.3 47.115 104 54 1 119 221 12 115 7.30e-28 111
Msa0734110 AT4G01680.1 39.286 140 74 2 119 257 12 141 7.35e-28 112
Msa0734110 AT3G23250.1 36.364 187 93 5 119 297 12 180 7.41e-28 110
Msa0734110 AT5G07700.1 48.113 106 54 1 117 221 10 115 7.67e-28 112
Msa0734110 AT5G07700.2 48.113 106 54 1 117 221 10 115 7.67e-28 112
Msa0734110 AT1G26780.2 45.600 125 65 1 118 239 95 219 8.17e-28 112
Msa0734110 AT1G66230.1 44.882 127 62 3 119 243 12 132 8.30e-28 110
Msa0734110 AT5G14750.1 42.254 142 77 3 121 261 18 155 9.13e-28 108
Msa0734110 AT5G16770.1 47.115 104 54 1 119 221 12 115 9.56e-28 111
Msa0734110 AT5G16770.2 47.115 104 54 1 119 221 12 115 9.56e-28 111
Msa0734110 AT5G26660.1 44.954 109 57 2 119 225 12 119 9.72e-28 112
Msa0734110 AT5G07690.1 50.495 101 49 1 117 216 10 110 9.85e-28 111
Msa0734110 AT1G18570.1 39.216 153 76 3 119 270 13 149 1.04e-27 111
Msa0734110 AT3G12720.1 44.660 103 54 2 121 221 24 125 1.37e-27 110
Msa0734110 AT4G01680.3 39.286 140 74 2 119 257 12 141 1.41e-27 108
Msa0734110 AT4G28110.1 46.667 105 55 1 121 224 14 118 1.46e-27 109
Msa0734110 AT5G61420.2 47.170 106 55 1 117 221 10 115 2.20e-27 111
Msa0734110 AT1G09540.1 46.789 109 55 2 119 225 12 119 2.27e-27 111
Msa0734110 AT1G57560.2 46.667 105 53 2 119 221 12 115 2.69e-27 108
Msa0734110 AT1G57560.1 46.667 105 53 2 119 221 12 115 2.84e-27 109
Msa0734110 AT3G13890.2 43.137 102 57 1 121 221 14 115 4.32e-27 110
Msa0734110 AT1G74430.1 44.444 108 59 1 119 225 12 119 4.58e-27 108
Msa0734110 AT3G02940.2 46.154 104 55 1 119 221 12 115 5.11e-27 108
Msa0734110 AT4G05100.1 43.966 116 64 1 107 221 1 116 5.78e-27 109
Msa0734110 AT4G33450.1 49.524 105 50 1 121 222 19 123 6.21e-27 107
Msa0734110 AT5G35550.1 31.513 238 149 7 109 334 4 239 6.32e-27 107
Msa0734110 AT1G22640.1 45.631 103 53 2 121 221 14 115 7.52e-27 107
Msa0734110 AT3G02940.1 46.154 104 55 1 119 221 12 115 8.32e-27 108
Msa0734110 AT3G02940.3 46.154 104 55 1 119 221 12 115 8.32e-27 108
Msa0734110 AT4G09460.1 44.660 103 54 2 121 221 14 115 9.82e-27 106
Msa0734110 AT4G12350.1 48.544 103 50 2 121 221 14 115 1.12e-26 107
Msa0734110 AT5G55020.1 44.231 104 57 1 118 220 25 128 1.16e-26 110
Msa0734110 AT4G21440.1 45.192 104 56 1 119 221 12 115 1.21e-26 108
Msa0734110 AT4G13480.1 46.565 131 60 4 117 245 4 126 1.26e-26 107
Msa0734110 AT5G10280.1 45.714 105 54 2 119 221 12 115 1.29e-26 108
Msa0734110 AT3G61250.1 51.515 99 45 2 119 215 12 109 1.30e-26 107
Msa0734110 AT4G01680.2 37.500 152 72 3 119 257 12 153 1.48e-26 108
Msa0734110 AT5G17800.1 43.902 123 66 1 116 235 88 210 1.68e-26 107
Msa0734110 AT3G01530.1 46.429 112 57 2 111 220 17 127 1.97e-26 104
Msa0734110 AT5G65230.1 47.619 105 52 2 119 221 12 115 2.05e-26 107
Msa0734110 AT3G24310.1 47.244 127 57 4 121 245 20 138 2.85e-26 106
Msa0734110 AT4G22680.1 47.573 103 51 2 121 221 14 115 3.03e-26 105
Msa0734110 AT3G13890.1 40.541 111 56 2 121 221 14 124 3.71e-26 107
Msa0734110 AT5G56110.1 46.610 118 61 2 107 223 1 117 4.51e-26 106
Msa0734110 AT4G34990.1 45.283 106 57 1 121 225 14 119 4.79e-26 105
Msa0734110 AT1G68320.1 32.547 212 123 7 117 311 17 225 4.98e-26 105
Msa0734110 AT5G60890.1 47.170 106 55 1 117 221 10 115 5.01e-26 105
Msa0734110 AT3G08500.1 45.192 104 56 1 119 221 30 133 5.27e-26 107
Msa0734110 AT5G40330.1 42.202 109 62 1 109 216 2 110 5.81e-26 103
Msa0734110 AT1G73410.1 51.402 107 49 1 121 224 6 112 7.64e-26 104
Msa0734110 AT5G12870.1 44.118 102 56 1 121 221 20 121 1.00e-25 104
Msa0734110 AT1G73410.2 51.402 107 49 1 121 224 6 112 1.00e-25 102
Msa0734110 AT5G59780.3 41.803 122 68 2 113 232 2 122 1.07e-25 103
Msa0734110 AT5G40350.1 43.548 124 65 2 121 243 19 138 1.24e-25 102
Msa0734110 AT3G27810.1 42.105 133 74 2 121 252 22 152 1.52e-25 103
Msa0734110 AT3G46130.1 43.860 114 61 2 121 232 11 123 2.08e-25 103
Msa0734110 AT5G16600.1 49.524 105 50 2 119 221 12 115 2.31e-25 104
Msa0734110 AT1G16490.1 44.167 120 63 3 121 237 16 134 2.34e-25 103
Msa0734110 AT1G06180.1 46.154 117 58 3 119 231 12 127 2.36e-25 103
Msa0734110 AT2G16720.1 43.689 103 55 2 121 221 14 115 2.57e-25 103
Msa0734110 AT2G26960.1 46.602 103 54 1 119 220 20 122 3.39e-25 105
Msa0734110 AT5G15310.2 45.192 104 56 1 119 221 12 115 3.69e-25 103
Msa0734110 AT5G15310.1 45.192 104 56 1 119 221 12 115 3.83e-25 104
Msa0734110 AT5G15310.4 47.959 98 50 1 119 215 12 109 4.18e-25 102
Msa0734110 AT3G01140.2 47.959 98 50 1 119 215 12 109 4.62e-25 104
Msa0734110 AT3G01140.1 47.959 98 50 1 119 215 55 152 6.47e-25 104
Msa0734110 AT4G17785.2 42.735 117 64 2 107 221 1 116 6.87e-25 103
Msa0734110 AT4G17785.1 42.735 117 64 2 107 221 1 116 7.61e-25 103
Msa0734110 AT5G54230.1 44.118 102 56 1 121 221 14 115 7.64e-25 103
Msa0734110 AT3G13540.1 29.876 241 135 7 109 320 13 248 9.18e-25 101
Msa0734110 AT5G52600.1 41.525 118 67 2 112 227 5 122 1.05e-24 100
Msa0734110 AT3G53200.1 44.860 107 56 2 117 221 7 112 1.07e-24 100
Msa0734110 AT5G39700.1 39.370 127 76 1 95 220 29 155 1.32e-24 99.4
Msa0734110 AT2G31180.1 43.860 114 61 2 121 232 14 126 1.35e-24 100
Msa0734110 AT3G27920.1 46.392 97 51 1 121 216 16 112 1.65e-24 100
Msa0734110 AT1G34670.1 44.231 104 57 1 119 221 12 115 1.74e-24 103
Msa0734110 AT2G26950.1 43.119 109 53 2 117 220 14 118 1.97e-24 103
Msa0734110 AT5G62320.1 44.737 114 55 3 119 224 13 126 3.51e-24 99.8
Msa0734110 AT3G30210.1 29.412 221 140 7 121 339 29 235 3.93e-24 100
Msa0734110 AT2G47190.1 43.750 112 61 2 111 221 13 123 4.83e-24 100
Msa0734110 AT5G57620.1 42.241 116 65 2 121 234 14 129 5.39e-24 101
Msa0734110 AT1G79180.1 34.911 169 92 3 121 287 16 168 6.25e-24 100
Msa0734110 AT1G48000.1 42.017 119 65 2 121 238 34 149 8.31e-24 98.6
Msa0734110 AT5G62470.1 42.241 116 66 1 121 236 14 128 8.55e-24 100
Msa0734110 AT5G23000.1 42.735 117 64 3 107 221 1 116 8.97e-24 100
Msa0734110 AT3G62610.1 46.078 102 54 1 121 221 14 115 1.46e-23 100
Msa0734110 AT3G48920.1 41.667 120 66 2 121 239 20 136 1.58e-23 98.6
Msa0734110 AT1G56160.1 42.718 103 56 2 121 221 16 117 2.16e-23 99.0
Msa0734110 AT4G25560.1 41.593 113 65 1 110 221 1 113 2.55e-23 98.2
Msa0734110 AT1G18710.1 42.453 106 60 1 121 225 14 119 3.35e-23 97.8
Msa0734110 AT5G49330.1 46.154 104 55 1 119 221 12 115 3.41e-23 99.0
Msa0734110 AT3G60460.1 45.283 106 56 2 117 220 9 114 5.45e-23 97.8
Msa0734110 AT1G25340.1 45.631 103 53 2 121 221 20 121 6.49e-23 97.1
Msa0734110 AT5G14340.1 43.810 105 56 2 119 221 24 127 8.33e-23 96.7
Msa0734110 AT3G47600.1 37.795 127 78 1 121 246 14 140 1.14e-22 97.4
Msa0734110 AT1G74650.1 43.103 116 64 2 107 221 1 115 1.52e-22 97.1
Msa0734110 AT3G49690.1 44.545 110 57 3 121 226 14 123 1.82e-22 96.7
Msa0734110 AT5G49620.1 40.945 127 71 2 110 235 17 140 2.29e-22 96.3
Msa0734110 AT1G25340.2 43.564 101 53 1 121 221 20 116 2.78e-22 95.5
Msa0734110 AT5G62470.2 41.880 117 66 2 121 236 14 129 2.87e-22 96.7
Msa0734110 AT2G47460.1 44.118 102 56 1 121 221 14 115 5.44e-22 96.3
Msa0734110 AT1G25340.3 43.564 101 53 1 121 221 20 116 6.34e-22 95.1
Msa0734110 AT5G65790.1 44.545 110 57 3 121 226 14 123 1.75e-21 94.7
Msa0734110 AT1G66370.1 38.017 121 74 1 114 233 3 123 1.94e-21 92.4
Msa0734110 AT3G28910.1 46.875 96 50 1 121 215 14 109 3.70e-21 93.2
Msa0734110 AT3G06490.1 40.984 122 66 3 119 238 19 136 4.04e-21 92.8
Msa0734110 AT4G37780.1 37.273 110 67 2 121 228 14 123 8.85e-21 91.7
Msa0734110 AT5G26660.2 48.611 72 37 0 154 225 17 88 8.90e-21 92.0
Msa0734110 AT5G14750.3 41.667 108 59 2 154 261 18 121 1.20e-20 88.2
Msa0734110 AT3G12820.1 40.187 107 61 2 121 225 16 121 1.31e-20 89.7
Msa0734110 AT1G66380.1 45.098 102 55 1 115 215 4 105 1.34e-20 87.0
Msa0734110 AT1G79180.2 29.851 201 92 3 121 287 16 201 2.56e-20 90.9
Msa0734110 AT5G35550.2 48.684 76 39 0 154 229 53 128 2.86e-20 89.4
Msa0734110 AT5G52260.1 33.333 183 86 5 121 293 14 170 3.85e-20 89.4
Msa0734110 AT1G56650.1 44.660 103 56 1 115 216 4 106 4.17e-20 88.6
Msa0734110 AT3G27810.2 47.778 90 45 1 154 243 7 94 4.49e-20 86.7
Msa0734110 AT1G14350.2 38.938 113 68 1 124 235 28 140 4.93e-20 91.3
Msa0734110 AT1G14350.1 38.938 113 68 1 124 235 28 140 4.93e-20 91.3
Msa0734110 AT1G08810.1 42.268 97 55 1 121 216 14 110 7.83e-20 88.6
Msa0734110 AT5G40350.2 45.556 90 45 1 154 243 8 93 9.50e-20 85.9
Msa0734110 AT1G66390.1 45.098 102 55 1 115 215 4 105 1.89e-19 87.0
Msa0734110 AT2G02820.2 40.741 108 63 1 124 230 33 140 2.81e-19 89.4
Msa0734110 AT2G02820.1 40.741 108 63 1 124 230 33 140 2.96e-19 89.0
Msa0734110 AT2G02820.3 43.956 91 51 0 124 214 33 123 4.40e-19 87.4
Msa0734110 AT2G36890.1 40.777 103 59 2 121 221 14 116 4.67e-19 86.7
Msa0734110 AT5G49620.2 36.806 144 73 3 110 238 17 157 5.22e-19 87.0
Msa0734110 AT2G36890.2 40.777 103 59 2 121 221 55 157 9.98e-19 86.3
Msa0734110 AT5G59780.2 44.304 79 44 0 154 232 23 101 4.07e-18 82.4
Msa0734110 AT3G47600.2 36.207 116 71 1 131 246 22 134 8.28e-18 83.6
Msa0734110 AT3G46130.4 44.304 79 44 0 154 232 23 101 1.63e-17 81.3
Msa0734110 AT3G46130.3 44.304 79 44 0 154 232 13 91 1.80e-17 80.9
Msa0734110 AT2G37630.1 33.594 128 82 1 123 247 6 133 2.51e-17 82.8
Msa0734110 AT3G53200.2 48.529 68 35 0 154 221 12 79 1.21e-16 78.2
Msa0734110 AT3G12820.2 45.833 72 39 0 154 225 2 73 1.31e-16 77.8
Msa0734110 AT3G23250.2 35.252 139 67 3 165 297 2 123 1.61e-16 78.2
Msa0734110 AT3G18100.1 38.144 97 58 2 119 214 493 588 2.79e-15 77.8
Msa0734110 AT3G18100.1 36.170 94 60 0 121 214 546 639 3.09e-14 74.3
Msa0734110 AT3G18100.3 38.144 97 58 2 119 214 445 540 3.21e-15 77.4
Msa0734110 AT3G18100.3 36.170 94 60 0 121 214 498 591 2.97e-14 74.3
Msa0734110 AT3G18100.4 38.144 97 58 2 119 214 332 427 6.36e-15 76.6
Msa0734110 AT3G18100.4 36.170 94 60 0 121 214 385 478 5.76e-14 73.6
Msa0734110 AT5G14750.4 39.175 97 55 2 165 261 2 94 8.33e-15 71.2
Msa0734110 AT5G14750.2 39.175 97 55 2 165 261 2 94 8.33e-15 71.2
Msa0734110 AT3G18100.2 38.144 97 58 2 119 214 280 375 8.60e-15 75.9
Msa0734110 AT3G18100.2 36.170 94 60 0 121 214 333 426 7.94e-14 73.2
Msa0734110 AT1G71030.2 41.538 65 38 0 157 221 5 69 1.15e-14 72.0
Msa0734110 AT1G71030.1 41.538 65 38 0 157 221 19 83 1.46e-14 72.0
Msa0734110 AT1G22640.3 47.368 57 30 0 165 221 2 58 2.15e-14 71.6
Msa0734110 AT1G66380.3 47.619 63 33 0 154 216 11 73 1.10e-12 64.3
Msa0734110 AT1G66380.2 41.463 82 47 1 115 195 4 85 1.60e-11 61.2
Msa0734110 AT1G18960.1 32.031 128 78 5 121 247 10 129 3.23e-11 63.9
Msa0734110 AT1G14350.3 40.000 75 44 1 162 235 23 97 3.96e-11 64.3
Msa0734110 AT1G14350.4 40.000 75 44 1 162 235 23 97 3.96e-11 64.3

Find 74 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCCAACGGTTTCCAATTT+TGG 0.083397 5_1:+47720270 None:intergenic
AAGCTTGATTCTTGAGTATT+TGG 0.147400 5_1:+47721757 None:intergenic
TCCAAGTGCATGTTGTAATT+TGG 0.158793 5_1:+47719863 None:intergenic
TCATTTGCGTCCTGATATTA+AGG 0.222411 5_1:-47721256 Msa0734110:intron
AGCAATATGGTGAAAGAAAA+TGG 0.229075 5_1:-47721341 Msa0734110:CDS
AGTATGTTCCCTTACTCTTA+TGG 0.253114 5_1:-47721802 Msa0734110:CDS
ATTTATGACAGAAAGATAAT+TGG 0.266925 5_1:-47720330 Msa0734110:intron
GTCAATGGAGTTAAAGTCTT+TGG 0.299183 5_1:-47721916 Msa0734110:CDS
GTAGCTACACATGCCAAAAT+TGG 0.303292 5_1:-47720283 Msa0734110:CDS
ATCATTGGAATGCCACTAAA+AGG 0.314844 5_1:-47720201 Msa0734110:CDS
CTATGATGGATAGATTCTTA+TGG 0.321992 5_1:-47721867 Msa0734110:CDS
CCAAGTGCATGTTGTAATTT+GGG 0.329240 5_1:+47719864 None:intergenic
CATAAGAATCTATCCATCAT+AGG 0.343616 5_1:+47721868 None:intergenic
CTTAAGGATATTCAAGGTTA+TGG 0.350445 5_1:-47721661 Msa0734110:CDS
TAAGGCACAATGTGGAAGTT+TGG 0.351661 5_1:+47721680 None:intergenic
GAATCAAGCTTTGTTGTTGA+TGG 0.356694 5_1:-47721745 Msa0734110:CDS
ATAAAGTTGGTTAAGCAATA+TGG 0.364894 5_1:-47721354 Msa0734110:CDS
TATGATGGATAGATTCTTAT+GGG 0.372801 5_1:-47721866 Msa0734110:CDS
GCATGTTGTAATTTGGGTAT+TGG 0.376877 5_1:+47719870 None:intergenic
AACTTCCACATTGTGCCTTA+AGG 0.380633 5_1:-47721677 Msa0734110:CDS
CAAATAGCTGAGAAGTTAGA+AGG 0.389483 5_1:-47721315 Msa0734110:CDS
ATATATCTAACCTTAATATC+AGG 0.415935 5_1:+47721246 None:intergenic
AAGTGTTGCATGAGAGGAAG+AGG 0.420763 5_1:+47720051 None:intergenic
TCCATTGAAATCATGGTAAG+AGG 0.422796 5_1:-47721952 None:intergenic
TTAAAGGAAACTAATAAAGT+TGG 0.435526 5_1:-47721367 Msa0734110:intron
TGAGAGAGGTAAAGATCATA+AGG 0.438571 5_1:+47719812 None:intergenic
AGCTGAGAAGTTAGAAGGAA+GGG 0.452156 5_1:-47721310 Msa0734110:CDS
TTGTATGAAGTGTAGTTCAT+TGG 0.455805 5_1:+47719964 None:intergenic
GAGATAGCAAAGAAGATTCC+AGG 0.462177 5_1:-47720247 Msa0734110:CDS
ATGGTAAGAGGAGGAAATCA+TGG 0.470343 5_1:-47721940 Msa0734110:CDS
GAAGGTAATTCATTGAAAAG+AGG 0.470605 5_1:+47719998 None:intergenic
GGAGGAAATCATGGGGTCAA+TGG 0.472477 5_1:-47721931 Msa0734110:CDS
GCAATATGGTGAAAGAAAAT+GGG 0.474578 5_1:-47721340 Msa0734110:CDS
TTGTGCCTTAAGGATATTCA+AGG 0.475669 5_1:-47721667 Msa0734110:CDS
TAAGGAAAGTGTTGCATGAG+AGG 0.479295 5_1:+47720045 None:intergenic
CATAACCTTGAATATCCTTA+AGG 0.482233 5_1:+47721662 None:intergenic
TGGTTGGAACCATAAGAGTA+AGG 0.488644 5_1:+47721793 None:intergenic
TGCCAAAATTGGAAACCGTT+GGG 0.495529 5_1:-47720272 Msa0734110:CDS
CCCAAATTACAACATGCACT+TGG 0.498733 5_1:-47719864 Msa0734110:CDS
GTTCCAACCATGAGTTTATG+TGG 0.505567 5_1:-47721780 Msa0734110:CDS
ATGCCAAAATTGGAAACCGT+TGG 0.505828 5_1:-47720273 Msa0734110:CDS
AGAGGTAAAGATCATAAGGA+AGG 0.510605 5_1:+47719816 None:intergenic
AGTTATCCTTCCCACAATGT+TGG 0.513482 5_1:+47721630 None:intergenic
GGTGAAAACACCAACATTGT+GGG 0.515105 5_1:-47721640 Msa0734110:CDS
GAAGAATGAAACTAATTCCA+AGG 0.518190 5_1:-47720152 Msa0734110:CDS
ATGAGAGGAAGAGGGTATGT+TGG 0.522518 5_1:+47720060 None:intergenic
AAATGTCAATGACCCTATGA+TGG 0.523078 5_1:-47721881 Msa0734110:CDS
TGGCCACATAAACTCATGGT+TGG 0.526915 5_1:+47721777 None:intergenic
AGGAAATTATTCATAGAGGT+AGG 0.531230 5_1:+47719836 None:intergenic
TAGCTGAGAAGTTAGAAGGA+AGG 0.540309 5_1:-47721311 Msa0734110:CDS
ATAAGAATCTATCCATCATA+GGG 0.549024 5_1:+47721869 None:intergenic
TGGTGAAAACACCAACATTG+TGG 0.554704 5_1:-47721641 Msa0734110:CDS
GAGAAGTTAGAAGGAAGGGT+TGG 0.557009 5_1:-47721306 Msa0734110:CDS
TGGTAAGAGGAGGAAATCAT+GGG 0.576546 5_1:-47721939 Msa0734110:CDS
AGGAAGGAAATTATTCATAG+AGG 0.582868 5_1:+47719832 None:intergenic
AGTGTTGCATGAGAGGAAGA+GGG 0.587639 5_1:+47720052 None:intergenic
TATTTGGCCACATAAACTCA+TGG 0.590477 5_1:+47721773 None:intergenic
AAGAATGAAACTAATTCCAA+GGG 0.598750 5_1:-47720151 Msa0734110:CDS
ACTTCCGAGGTCTTGATCAA+AGG 0.601817 5_1:-47721598 Msa0734110:CDS
GGTTGGAACCATAAGAGTAA+GGG 0.602635 5_1:+47721794 None:intergenic
AGTGGACAAACGAAGAAGAC+AGG 0.603153 5_1:-47721573 Msa0734110:intron
CAAATGAAGAGGCTTTGAAG+TGG 0.621865 5_1:-47721714 Msa0734110:CDS
TCTTTGCTATCTCAGCCCAA+CGG 0.628371 5_1:+47720257 None:intergenic
ATTGAAATCATGGTAAGAGG+AGG 0.636458 5_1:-47721949 None:intergenic
TGGTGTCTTAGCAAATGAAG+AGG 0.638115 5_1:-47721725 Msa0734110:CDS
CTGTCCTTTGATCAAGACCT+CGG 0.642128 5_1:+47721594 None:intergenic
GCAAGCAGTGTAGAGAGCGA+TGG 0.650454 5_1:-47721284 Msa0734110:CDS
AAAACACCAACATTGTGGGA+AGG 0.651290 5_1:-47721636 Msa0734110:CDS
AATATCCTTAAGGCACAATG+TGG 0.654859 5_1:+47721672 None:intergenic
ACATATTCAACAATTGAGAG+AGG 0.676560 5_1:+47719798 None:intergenic
AGGTCTTGATCAAAGGACAG+TGG 0.688341 5_1:-47721591 Msa0734110:CDS
ATGATGGATAGATTCTTATG+GGG 0.690697 5_1:-47721865 Msa0734110:CDS
AACTAAGAAAGAGACTTCCG+AGG 0.693403 5_1:-47721611 Msa0734110:CDS
GGTAAGAGGAGGAAATCATG+GGG 0.754185 5_1:-47721938 Msa0734110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATATGAAATCAAAAAAT+CGG + chr5_1:47720523-47720542 None:intergenic 10.0%
!! TAAAAATGTATGTAATTATT+TGG + chr5_1:47721298-47721317 None:intergenic 10.0%
!!! TAATACTAATTATTTTACTT+GGG - chr5_1:47721375-47721394 Msa0734110:intron 10.0%
!! GTTAAATTCATATCTTATAT+CGG - chr5_1:47720185-47720204 Msa0734110:CDS 15.0%
!! TTAAATTCATATCTTATATC+GGG - chr5_1:47720186-47720205 Msa0734110:CDS 15.0%
!! GTAACTTCAAAAAAAAAAAA+AGG - chr5_1:47720256-47720275 Msa0734110:CDS 15.0%
!!! TCATAGTTCTAAATAAAAAA+AGG + chr5_1:47720302-47720321 None:intergenic 15.0%
!!! TTATTTGTTATGATGATTAA+AGG - chr5_1:47720353-47720372 Msa0734110:intron 15.0%
!!! ATTTAGATTCATATTTTTCA+AGG - chr5_1:47720710-47720729 Msa0734110:intron 15.0%
!!! ATTTTGTGCTAAATTAATAA+TGG + chr5_1:47720927-47720946 None:intergenic 15.0%
!!! AAAAAGTATCATTTATCAAA+GGG + chr5_1:47720977-47720996 None:intergenic 15.0%
!!! TGAAAATATGTTGTTTATTT+TGG + chr5_1:47721098-47721117 None:intergenic 15.0%
!!! CCTTAAAAATGTTTAAAATT+TGG + chr5_1:47721190-47721209 None:intergenic 15.0%
!!! CCAAATTTTAAACATTTTTA+AGG - chr5_1:47721187-47721206 Msa0734110:intron 15.0%
!!! GTAATACTAATTATTTTACT+TGG - chr5_1:47721374-47721393 Msa0734110:intron 15.0%
!! CGATTAAAAAATAGTATAAG+AGG + chr5_1:47720220-47720239 None:intergenic 20.0%
!! TTAAAGGAAACTAATAAAGT+TGG - chr5_1:47720369-47720388 Msa0734110:intron 20.0%
!! ATATATCTAACCTTAATATC+AGG + chr5_1:47720493-47720512 None:intergenic 20.0%
!!! CAAAAAGTATCATTTATCAA+AGG + chr5_1:47720978-47720997 None:intergenic 20.0%
!! ATGACATATTTCAAATGTTA+AGG + chr5_1:47721031-47721050 None:intergenic 20.0%
!!! ACTTTGAAATATGTTGTTTA+TGG + chr5_1:47721134-47721153 None:intergenic 20.0%
!!! AAATATAAGTATTGCATATG+AGG + chr5_1:47721257-47721276 None:intergenic 20.0%
!! ATTTATGACAGAAAGATAAT+TGG - chr5_1:47721406-47721425 Msa0734110:intron 20.0%
!! AAAATGCCATAAAAAATCAT+TGG - chr5_1:47721520-47721539 Msa0734110:intron 20.0%
!!! GATATAGTTTTCAAGTATAT+AGG + chr5_1:47721625-47721644 None:intergenic 20.0%
! ATAAGAATCTATCCATCATA+GGG + chr5_1:47719870-47719889 None:intergenic 25.0%
!!! TATGATGGATAGATTCTTAT+GGG - chr5_1:47719870-47719889 Msa0734110:CDS 25.0%
!! ATAAAGTTGGTTAAGCAATA+TGG - chr5_1:47720382-47720401 Msa0734110:intron 25.0%
! TGAATCTAAATCTAGATCAT+CGG + chr5_1:47720701-47720720 None:intergenic 25.0%
!! TGAAATATGTCATTTGTGAT+TGG - chr5_1:47721038-47721057 Msa0734110:intron 25.0%
! ATGTATGTAATTATTTGGAG+AGG + chr5_1:47721293-47721312 None:intergenic 25.0%
! AAGAATGAAACTAATTCCAA+GGG - chr5_1:47721585-47721604 Msa0734110:CDS 25.0%
!!! TTTTCAAGTATATAGGACTT+AGG + chr5_1:47721618-47721637 None:intergenic 25.0%
!! TTGATTTTCTTCAAGGTTTA+AGG + chr5_1:47721712-47721731 None:intergenic 25.0%
!!! GATTTGATTGATTTTCTTCA+AGG + chr5_1:47721719-47721738 None:intergenic 25.0%
CATAAGAATCTATCCATCAT+AGG + chr5_1:47719871-47719890 None:intergenic 30.0%
!! CTATGATGGATAGATTCTTA+TGG - chr5_1:47719869-47719888 Msa0734110:CDS 30.0%
!! ATGATGGATAGATTCTTATG+GGG - chr5_1:47719871-47719890 Msa0734110:CDS 30.0%
!!! CATTGTTTTGTTGATGGTTA+GGG + chr5_1:47719912-47719931 None:intergenic 30.0%
!! TACTTGCATTGTTTTGTTGA+TGG + chr5_1:47719918-47719937 None:intergenic 30.0%
AAGCTTGATTCTTGAGTATT+TGG + chr5_1:47719982-47720001 None:intergenic 30.0%
CATAACCTTGAATATCCTTA+AGG + chr5_1:47720077-47720096 None:intergenic 30.0%
CTTAAGGATATTCAAGGTTA+TGG - chr5_1:47720075-47720094 Msa0734110:CDS 30.0%
AGCAATATGGTGAAAGAAAA+TGG - chr5_1:47720395-47720414 Msa0734110:intron 30.0%
GCAATATGGTGAAAGAAAAT+GGG - chr5_1:47720396-47720415 Msa0734110:intron 30.0%
TTCTACATAGTTGCATGTAA+TGG - chr5_1:47720611-47720630 Msa0734110:intron 30.0%
ATCTAGATCATCGGATAAAT+AGG + chr5_1:47720692-47720711 None:intergenic 30.0%
TATCAATCAACCTATGTATG+CGG + chr5_1:47720771-47720790 None:intergenic 30.0%
ATCAATCATCAATCTTGATG+TGG - chr5_1:47720894-47720913 Msa0734110:intron 30.0%
TCAATCATCAATCTTGATGT+GGG - chr5_1:47720895-47720914 Msa0734110:intron 30.0%
!!! GGCATTCCAATGATTTTTTA+TGG + chr5_1:47721529-47721548 None:intergenic 30.0%
! TGAATTTTGTCTCCTTTTAG+TGG + chr5_1:47721550-47721569 None:intergenic 30.0%
GAAGAATGAAACTAATTCCA+AGG - chr5_1:47721584-47721603 Msa0734110:CDS 30.0%
!!! GTTGGTAATTTTTGTAGTGA+TGG + chr5_1:47721661-47721680 None:intergenic 30.0%
GAAGGTAATTCATTGAAAAG+AGG + chr5_1:47721741-47721760 None:intergenic 30.0%
TCATTGGAAAAAGATTCAGA+AGG + chr5_1:47721759-47721778 None:intergenic 30.0%
TTGTATGAAGTGTAGTTCAT+TGG + chr5_1:47721775-47721794 None:intergenic 30.0%
AGGAAATTATTCATAGAGGT+AGG + chr5_1:47721903-47721922 None:intergenic 30.0%
AGGAAGGAAATTATTCATAG+AGG + chr5_1:47721907-47721926 None:intergenic 30.0%
ACATATTCAACAATTGAGAG+AGG + chr5_1:47721941-47721960 None:intergenic 30.0%
GTCAATGGAGTTAAAGTCTT+TGG - chr5_1:47719820-47719839 Msa0734110:CDS 35.0%
AAATGTCAATGACCCTATGA+TGG - chr5_1:47719855-47719874 Msa0734110:CDS 35.0%
!!! GCATTGTTTTGTTGATGGTT+AGG + chr5_1:47719913-47719932 None:intergenic 35.0%
AGTATGTTCCCTTACTCTTA+TGG - chr5_1:47719934-47719953 Msa0734110:CDS 35.0%
TATTTGGCCACATAAACTCA+TGG + chr5_1:47719966-47719985 None:intergenic 35.0%
!! GAATCAAGCTTTGTTGTTGA+TGG - chr5_1:47719991-47720010 Msa0734110:CDS 35.0%
AATATCCTTAAGGCACAATG+TGG + chr5_1:47720067-47720086 None:intergenic 35.0%
TTGTGCCTTAAGGATATTCA+AGG - chr5_1:47720069-47720088 Msa0734110:CDS 35.0%
CAAATAGCTGAGAAGTTAGA+AGG - chr5_1:47720421-47720440 Msa0734110:intron 35.0%
TCATTTGCGTCCTGATATTA+AGG - chr5_1:47720480-47720499 Msa0734110:intron 35.0%
! TGTGCTACTATATCATCCTA+GGG + chr5_1:47720577-47720596 None:intergenic 35.0%
! TTGTGCTACTATATCATCCT+AGG + chr5_1:47720578-47720597 None:intergenic 35.0%
! TTCAAGGATCTGTGTCTTTT+AGG - chr5_1:47720726-47720745 Msa0734110:intron 35.0%
! TCAAGGATCTGTGTCTTTTA+GGG - chr5_1:47720727-47720746 Msa0734110:intron 35.0%
!! TGTTTGTTATCCGCATACAT+AGG - chr5_1:47720758-47720777 Msa0734110:intron 35.0%
!! AACCTTACAGCTTTAGAACT+TGG - chr5_1:47721224-47721243 Msa0734110:intron 35.0%
ATCATTGGAATGCCACTAAA+AGG - chr5_1:47721535-47721554 Msa0734110:intron 35.0%
! GGTAATTTTTGTAGTGATGG+AGG + chr5_1:47721658-47721677 None:intergenic 35.0%
GCATGTTGTAATTTGGGTAT+TGG + chr5_1:47721869-47721888 None:intergenic 35.0%
CCAAGTGCATGTTGTAATTT+GGG + chr5_1:47721875-47721894 None:intergenic 35.0%
TCCAAGTGCATGTTGTAATT+TGG + chr5_1:47721876-47721895 None:intergenic 35.0%
AGAGGTAAAGATCATAAGGA+AGG + chr5_1:47721923-47721942 None:intergenic 35.0%
TGAGAGAGGTAAAGATCATA+AGG + chr5_1:47721927-47721946 None:intergenic 35.0%
ATGGTAAGAGGAGGAAATCA+TGG - chr5_1:47719796-47719815 Msa0734110:CDS 40.0%
TGGTAAGAGGAGGAAATCAT+GGG - chr5_1:47719797-47719816 Msa0734110:CDS 40.0%
GGTTGGAACCATAAGAGTAA+GGG + chr5_1:47719945-47719964 None:intergenic 40.0%
TGGTTGGAACCATAAGAGTA+AGG + chr5_1:47719946-47719965 None:intergenic 40.0%
GTTCCAACCATGAGTTTATG+TGG - chr5_1:47719956-47719975 Msa0734110:CDS 40.0%
TGGTGTCTTAGCAAATGAAG+AGG - chr5_1:47720011-47720030 Msa0734110:CDS 40.0%
!! CAAATGAAGAGGCTTTGAAG+TGG - chr5_1:47720022-47720041 Msa0734110:CDS 40.0%
TAAGGCACAATGTGGAAGTT+TGG + chr5_1:47720059-47720078 None:intergenic 40.0%
AACTTCCACATTGTGCCTTA+AGG - chr5_1:47720059-47720078 Msa0734110:CDS 40.0%
TGGTGAAAACACCAACATTG+TGG - chr5_1:47720095-47720114 Msa0734110:CDS 40.0%
GGTGAAAACACCAACATTGT+GGG - chr5_1:47720096-47720115 Msa0734110:CDS 40.0%
AAAACACCAACATTGTGGGA+AGG - chr5_1:47720100-47720119 Msa0734110:CDS 40.0%
AGTTATCCTTCCCACAATGT+TGG + chr5_1:47720109-47720128 None:intergenic 40.0%
AACTAAGAAAGAGACTTCCG+AGG - chr5_1:47720125-47720144 Msa0734110:CDS 40.0%
TAGCTGAGAAGTTAGAAGGA+AGG - chr5_1:47720425-47720444 Msa0734110:intron 40.0%
AGCTGAGAAGTTAGAAGGAA+GGG - chr5_1:47720426-47720445 Msa0734110:intron 40.0%
GTCAAATTCAGGCACAAAAC+TGG + chr5_1:47720555-47720574 None:intergenic 40.0%
ATCATCCTAGGGTCAAATTC+AGG + chr5_1:47720566-47720585 None:intergenic 40.0%
!! TGCCAAGTTCTAAAGCTGTA+AGG + chr5_1:47721229-47721248 None:intergenic 40.0%
GTAGCTACACATGCCAAAAT+TGG - chr5_1:47721453-47721472 Msa0734110:intron 40.0%
ATGCCAAAATTGGAAACCGT+TGG - chr5_1:47721463-47721482 Msa0734110:intron 40.0%
TGCCAAAATTGGAAACCGTT+GGG - chr5_1:47721464-47721483 Msa0734110:intron 40.0%
GAGATAGCAAAGAAGATTCC+AGG - chr5_1:47721489-47721508 Msa0734110:intron 40.0%
! ATGGCATTTTCAGTTCTTCC+TGG + chr5_1:47721510-47721529 None:intergenic 40.0%
!! TTTTGTAGTGATGGAGGTGT+TGG + chr5_1:47721652-47721671 None:intergenic 40.0%
!! TAAGGAAAGTGTTGCATGAG+AGG + chr5_1:47721694-47721713 None:intergenic 40.0%
CCCAAATTACAACATGCACT+TGG - chr5_1:47721872-47721891 Msa0734110:CDS 40.0%
GGTAAGAGGAGGAAATCATG+GGG - chr5_1:47719798-47719817 Msa0734110:CDS 45.0%
TGGCCACATAAACTCATGGT+TGG + chr5_1:47719962-47719981 None:intergenic 45.0%
ACTTCCGAGGTCTTGATCAA+AGG - chr5_1:47720138-47720157 Msa0734110:CDS 45.0%
CTGTCCTTTGATCAAGACCT+CGG + chr5_1:47720145-47720164 None:intergenic 45.0%
AGGTCTTGATCAAAGGACAG+TGG - chr5_1:47720145-47720164 Msa0734110:CDS 45.0%
AGTGGACAAACGAAGAAGAC+AGG - chr5_1:47720163-47720182 Msa0734110:CDS 45.0%
GAGAAGTTAGAAGGAAGGGT+TGG - chr5_1:47720430-47720449 Msa0734110:intron 45.0%
TTGTGCCTGAATTTGACCCT+AGG - chr5_1:47720558-47720577 Msa0734110:intron 45.0%
! AGCCCAACGGTTTCCAATTT+TGG + chr5_1:47721469-47721488 None:intergenic 45.0%
! TCTTTGCTATCTCAGCCCAA+CGG + chr5_1:47721482-47721501 None:intergenic 45.0%
!! GGACTTAGGTTTTGATCCCT+TGG + chr5_1:47721604-47721623 None:intergenic 45.0%
! ATGAGAGGAAGAGGGTATGT+TGG + chr5_1:47721679-47721698 None:intergenic 45.0%
AGTGTTGCATGAGAGGAAGA+GGG + chr5_1:47721687-47721706 None:intergenic 45.0%
! AAGTGTTGCATGAGAGGAAG+AGG + chr5_1:47721688-47721707 None:intergenic 45.0%
GGAGGAAATCATGGGGTCAA+TGG - chr5_1:47719805-47719824 Msa0734110:CDS 50.0%
GCAAGCAGTGTAGAGAGCGA+TGG - chr5_1:47720452-47720471 Msa0734110:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 47719796 47721962 47719796 ID=Msa0734110;Name=Msa0734110
chr5_1 mRNA 47719796 47721962 47719796 ID=Msa0734110-mRNA-1;Parent=Msa0734110;Name=Msa0734110-mRNA-1;_AED=0.02;_eAED=0.03;_QI=0|0|0|1|1|1|3|0|353
chr5_1 exon 47721574 47721962 47721574 ID=Msa0734110-mRNA-1:exon:13691;Parent=Msa0734110-mRNA-1
chr5_1 exon 47721257 47721383 47721257 ID=Msa0734110-mRNA-1:exon:13690;Parent=Msa0734110-mRNA-1
chr5_1 exon 47719796 47720341 47719796 ID=Msa0734110-mRNA-1:exon:13689;Parent=Msa0734110-mRNA-1
chr5_1 CDS 47721574 47721962 47721574 ID=Msa0734110-mRNA-1:cds;Parent=Msa0734110-mRNA-1
chr5_1 CDS 47721257 47721383 47721257 ID=Msa0734110-mRNA-1:cds;Parent=Msa0734110-mRNA-1
chr5_1 CDS 47719796 47720341 47719796 ID=Msa0734110-mRNA-1:cds;Parent=Msa0734110-mRNA-1
Gene Sequence

>Msa0734110

ATGGTAAGAGGAGGAAATCATGGGGTCAATGGAGTTAAAGTCTTTGGCAATGAAAATATAAATGTCAATGACCCTATGATGGATAGATTCTTATGGGGACAAATGTTTCACTACCCTAACCATCAACAAAACAATGCAAGTATGTTCCCTTACTCTTATGGTTCCAACCATGAGTTTATGTGGCCAAATACTCAAGAATCAAGCTTTGTTGTTGATGGTGTCTTAGCAAATGAAGAGGCTTTGAAGTGGACTAACTTCAACCAAACTTCCACATTGTGCCTTAAGGATATTCAAGGTTATGGTGAAAACACCAACATTGTGGGAAGGATAACTAAGAAAGAGACTTCCGAGGTCTTGATCAAAGGACAGTGGACAAACGAAGAAGACAGGAAACTAATAAAGTTGGTTAAGCAATATGGTGAAAGAAAATGGGCTCAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCTGATATTAAGAAAGATAATTGGAGTGAAGAAGAAGAGAAGATATTAGTAGCTACACATGCCAAAATTGGAAACCGTTGGGCTGAGATAGCAAAGAAGATTCCAGGAAGAACTGAAAATGCCATAAAAAATCATTGGAATGCCACTAAAAGGAGACAAAATTCAAGAAGAAAAAACAAGAAGAATGAAACTAATTCCAAGGGATCAAAACCTAAGTCCTATATACTTGAAAACTATATCAAAACCAACACCTCCATCACTACAAAAATTACCAACATACCCTCTTCCTCTCATGCAACACTTTCCTTAAACCTTGAAGAAAATCAATCAAATCCTCTTTTCAATGAATTACCTTCTGAATCTTTTTCCAATGAACTACACTTCATACAACAAATTTTGATTGATGATAATAGTCAGAATGTTGTTGATGATGTGAATGAGAGTGAGCTTGTTCATTCAATCCAATACCCAAATTACAACATGCACTTGGATACTCCTACCTCTATGAATAATTTCCTTCCTTATGATCTTTACCTCTCTCAATTGTTGAATATGTAG
Protein sequence

>Msa0734110

MVRGGNHGVNGVKVFGNENINVNDPMMDRFLWGQMFHYPNHQQNNASMFPYSYGSNHEFMWPNTQESSFVVDGVLANEEALKWTNFNQTSTLCLKDIQGYGENTNIVGRITKKETSEVLIKGQWTNEEDRKLIKLVKQYGERKWAQIAEKLEGRVGKQCRERWHNHLRPDIKKDNWSEEEEKILVATHAKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKNETNSKGSKPKSYILENYIKTNTSITTKITNIPSSSHATLSLNLEENQSNPLFNELPSESFSNELHFIQQILIDDNSQNVVDDVNESELVHSIQYPNYNMHLDTPTSMNNFLPYDLYLSQLLNM*