Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734220 | XP_039685680.1 | 76.303 | 806 | 118 | 8 | 1 | 740 | 1 | 799 | 0.0 | 1237 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734220 | sp|Q9SZL8|FRS5_ARATH | 25.957 | 601 | 406 | 10 | 32 | 626 | 70 | 637 | 1.63e-60 | 221 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734220 | D3YBB9 | 71.214 | 799 | 190 | 7 | 1 | 759 | 49 | 847 | 0.0 | 1158 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0734220 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734220 | MtrunA17_Chr3g0082121 | 31.963 | 657 | 388 | 16 | 41 | 688 | 49 | 655 | 9.16e-92 | 302 |
| Msa0734220 | MtrunA17_Chr2g0324011 | 30.033 | 606 | 367 | 11 | 36 | 626 | 8 | 571 | 7.56e-90 | 294 |
| Msa0734220 | MtrunA17_Chr3g0088371 | 81.290 | 155 | 26 | 1 | 608 | 759 | 30 | 184 | 2.22e-79 | 252 |
| Msa0734220 | MtrunA17_Chr1g0202341 | 28.736 | 609 | 366 | 15 | 34 | 623 | 50 | 609 | 7.18e-69 | 239 |
| Msa0734220 | MtrunA17_Chr8g0363841 | 28.523 | 596 | 380 | 12 | 40 | 626 | 22 | 580 | 3.68e-66 | 232 |
| Msa0734220 | MtrunA17_Chr1g0203721 | 25.971 | 747 | 455 | 20 | 1 | 700 | 16 | 711 | 2.70e-65 | 233 |
| Msa0734220 | MtrunA17_Chr1g0164591 | 35.093 | 322 | 194 | 4 | 131 | 450 | 1 | 309 | 7.57e-63 | 213 |
| Msa0734220 | MtrunA17_Chr5g0448761 | 25.037 | 667 | 460 | 12 | 32 | 689 | 57 | 692 | 3.38e-60 | 217 |
| Msa0734220 | MtrunA17_Chr2g0296781 | 26.667 | 645 | 416 | 17 | 39 | 669 | 1 | 602 | 1.05e-58 | 212 |
| Msa0734220 | MtrunA17_Chr6g0458391 | 27.104 | 594 | 363 | 16 | 41 | 623 | 231 | 765 | 7.23e-57 | 207 |
| Msa0734220 | MtrunA17_Chr6g0477261 | 28.367 | 490 | 328 | 11 | 180 | 660 | 7 | 482 | 1.05e-53 | 197 |
| Msa0734220 | MtrunA17_Chr1g0172971 | 81.197 | 117 | 21 | 1 | 1 | 116 | 1 | 117 | 1.15e-53 | 194 |
| Msa0734220 | MtrunA17_Chr7g0258861 | 35.621 | 306 | 173 | 6 | 36 | 336 | 8 | 294 | 3.10e-53 | 186 |
| Msa0734220 | MtrunA17_Chr2g0287651 | 26.782 | 463 | 305 | 9 | 39 | 496 | 79 | 512 | 1.98e-51 | 193 |
| Msa0734220 | MtrunA17_Chr5g0441581 | 24.829 | 729 | 457 | 23 | 32 | 734 | 26 | 689 | 1.31e-50 | 188 |
| Msa0734220 | MtrunA17_Chr5g0440451 | 23.916 | 669 | 441 | 15 | 34 | 682 | 42 | 662 | 2.52e-48 | 184 |
| Msa0734220 | MtrunA17_Chr1g0198761 | 27.358 | 530 | 343 | 14 | 26 | 540 | 38 | 540 | 8.29e-46 | 175 |
| Msa0734220 | MtrunA17_Chr1g0196541 | 26.509 | 464 | 308 | 9 | 39 | 499 | 1 | 434 | 1.33e-45 | 174 |
| Msa0734220 | MtrunA17_Chr3g0118611 | 27.719 | 469 | 308 | 10 | 221 | 680 | 111 | 557 | 2.37e-45 | 174 |
| Msa0734220 | MtrunA17_Chr1g0203051 | 22.913 | 515 | 367 | 6 | 50 | 562 | 94 | 580 | 7.61e-44 | 168 |
| Msa0734220 | MtrunA17_Chr2g0329031 | 25.532 | 611 | 386 | 17 | 23 | 619 | 2 | 557 | 7.38e-43 | 166 |
| Msa0734220 | MtrunA17_Chr1g0207551 | 24.275 | 655 | 447 | 15 | 31 | 679 | 30 | 641 | 7.54e-43 | 167 |
| Msa0734220 | MtrunA17_Chr2g0291591 | 26.253 | 499 | 312 | 14 | 16 | 499 | 44 | 501 | 2.43e-42 | 162 |
| Msa0734220 | MtrunA17_Chr2g0290391 | 25.822 | 608 | 375 | 19 | 39 | 621 | 55 | 611 | 1.20e-41 | 162 |
| Msa0734220 | MtrunA17_Chr3g0080351 | 23.581 | 687 | 458 | 15 | 34 | 713 | 75 | 701 | 5.63e-41 | 161 |
| Msa0734220 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 188 | 260 | 1 | 73 | 1.31e-40 | 143 |
| Msa0734220 | MtrunA17_Chr2g0276841 | 26.892 | 502 | 322 | 15 | 49 | 536 | 84 | 554 | 2.45e-40 | 158 |
| Msa0734220 | MtrunA17_Chr5g0431001 | 27.273 | 451 | 283 | 12 | 40 | 473 | 66 | 488 | 5.54e-40 | 154 |
| Msa0734220 | MtrunA17_Chr2g0287061 | 24.214 | 636 | 378 | 19 | 41 | 655 | 189 | 741 | 1.26e-37 | 150 |
| Msa0734220 | MtrunA17_Chr5g0448511 | 25.120 | 418 | 288 | 8 | 216 | 626 | 1 | 400 | 5.33e-37 | 146 |
| Msa0734220 | MtrunA17_Chr2g0291581 | 22.896 | 594 | 404 | 13 | 38 | 623 | 74 | 621 | 3.73e-35 | 142 |
| Msa0734220 | MtrunA17_Chr2g0294841 | 26.600 | 500 | 320 | 13 | 3 | 482 | 7 | 479 | 2.77e-34 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734220 | AT4G38180.1 | 25.957 | 601 | 406 | 10 | 32 | 626 | 70 | 637 | 1.66e-61 | 221 |
| Msa0734220 | AT4G15090.1 | 24.305 | 683 | 460 | 15 | 50 | 714 | 66 | 709 | 2.57e-48 | 184 |
| Msa0734220 | AT4G15090.5 | 24.305 | 683 | 460 | 15 | 50 | 714 | 66 | 709 | 2.57e-48 | 184 |
| Msa0734220 | AT4G15090.3 | 24.305 | 683 | 460 | 15 | 50 | 714 | 66 | 709 | 2.57e-48 | 184 |
| Msa0734220 | AT4G15090.2 | 24.305 | 683 | 460 | 15 | 50 | 714 | 66 | 709 | 2.57e-48 | 184 |
| Msa0734220 | AT4G15090.4 | 24.305 | 683 | 460 | 15 | 50 | 714 | 66 | 709 | 2.57e-48 | 184 |
| Msa0734220 | AT2G27110.3 | 26.722 | 479 | 315 | 11 | 213 | 680 | 36 | 489 | 3.36e-45 | 173 |
| Msa0734220 | AT2G27110.2 | 26.722 | 479 | 315 | 11 | 213 | 680 | 181 | 634 | 6.95e-45 | 174 |
| Msa0734220 | AT2G27110.1 | 26.722 | 479 | 315 | 11 | 213 | 680 | 181 | 634 | 6.95e-45 | 174 |
| Msa0734220 | AT3G06250.2 | 25.000 | 620 | 361 | 17 | 34 | 633 | 189 | 724 | 4.00e-42 | 164 |
| Msa0734220 | AT3G06250.1 | 25.000 | 620 | 361 | 17 | 34 | 633 | 189 | 724 | 4.00e-42 | 164 |
| Msa0734220 | AT3G06250.3 | 25.000 | 620 | 361 | 17 | 34 | 633 | 189 | 724 | 4.00e-42 | 164 |
| Msa0734220 | AT1G76320.3 | 24.186 | 645 | 418 | 18 | 50 | 681 | 12 | 598 | 3.05e-41 | 161 |
| Msa0734220 | AT1G76320.1 | 24.186 | 645 | 418 | 18 | 50 | 681 | 12 | 598 | 7.45e-41 | 160 |
| Msa0734220 | AT1G76320.4 | 24.186 | 645 | 418 | 18 | 50 | 681 | 12 | 598 | 7.45e-41 | 160 |
| Msa0734220 | AT1G76320.2 | 24.186 | 645 | 418 | 18 | 50 | 681 | 12 | 598 | 8.43e-41 | 160 |
| Msa0734220 | AT3G22170.2 | 22.136 | 646 | 438 | 14 | 34 | 669 | 69 | 659 | 2.37e-39 | 157 |
| Msa0734220 | AT3G22170.1 | 22.136 | 646 | 438 | 14 | 34 | 669 | 69 | 659 | 2.37e-39 | 157 |
| Msa0734220 | AT4G38170.1 | 24.694 | 409 | 289 | 9 | 235 | 640 | 24 | 416 | 5.71e-38 | 149 |
| Msa0734220 | AT1G10240.2 | 25.651 | 499 | 332 | 15 | 49 | 536 | 62 | 532 | 1.37e-36 | 147 |
| Msa0734220 | AT1G10240.1 | 25.651 | 499 | 332 | 15 | 49 | 536 | 62 | 532 | 1.37e-36 | 147 |
| Msa0734220 | AT5G18960.2 | 23.948 | 618 | 361 | 19 | 24 | 622 | 200 | 727 | 2.69e-36 | 147 |
| Msa0734220 | AT5G18960.1 | 23.948 | 618 | 361 | 19 | 24 | 622 | 200 | 727 | 2.69e-36 | 147 |
| Msa0734220 | AT5G28530.1 | 23.960 | 601 | 397 | 16 | 40 | 621 | 60 | 619 | 1.10e-34 | 141 |
| Msa0734220 | AT5G28530.3 | 23.794 | 601 | 394 | 17 | 40 | 621 | 60 | 615 | 5.75e-34 | 139 |
| Msa0734220 | AT5G28530.2 | 23.794 | 601 | 394 | 17 | 40 | 621 | 60 | 615 | 5.75e-34 | 139 |
| Msa0734220 | AT2G32250.5 | 22.861 | 713 | 438 | 21 | 4 | 704 | 10 | 622 | 9.62e-33 | 135 |
| Msa0734220 | AT2G32250.6 | 22.861 | 713 | 438 | 21 | 4 | 704 | 10 | 622 | 1.90e-32 | 135 |
| Msa0734220 | AT2G32250.1 | 22.861 | 713 | 438 | 21 | 4 | 704 | 10 | 622 | 1.90e-32 | 135 |
| Msa0734220 | AT2G32250.3 | 22.861 | 713 | 438 | 21 | 4 | 704 | 10 | 622 | 1.90e-32 | 135 |
| Msa0734220 | AT2G32250.2 | 22.721 | 713 | 439 | 20 | 4 | 704 | 10 | 622 | 1.99e-32 | 135 |
| Msa0734220 | AT2G32250.4 | 22.721 | 713 | 439 | 20 | 4 | 704 | 10 | 622 | 1.99e-32 | 135 |
| Msa0734220 | AT2G32250.8 | 22.639 | 667 | 407 | 18 | 50 | 704 | 12 | 581 | 9.66e-32 | 132 |
| Msa0734220 | AT2G32250.7 | 22.789 | 667 | 406 | 19 | 50 | 704 | 12 | 581 | 1.05e-31 | 132 |
| Msa0734220 | AT1G80010.1 | 23.349 | 621 | 378 | 22 | 41 | 623 | 101 | 661 | 5.99e-31 | 130 |
| Msa0734220 | AT1G52520.1 | 21.835 | 632 | 426 | 17 | 41 | 656 | 91 | 670 | 1.31e-27 | 119 |
| Msa0734220 | AT4G19990.1 | 28.358 | 268 | 185 | 4 | 219 | 483 | 106 | 369 | 6.06e-27 | 117 |
| Msa0734220 | AT4G19990.7 | 28.358 | 268 | 185 | 4 | 219 | 483 | 177 | 440 | 7.64e-27 | 117 |
| Msa0734220 | AT4G19990.5 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 7.92e-27 | 117 |
| Msa0734220 | AT4G19990.3 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 8.98e-27 | 117 |
| Msa0734220 | AT4G19990.4 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 8.98e-27 | 117 |
| Msa0734220 | AT4G19990.6 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.16e-26 | 117 |
| Msa0734220 | AT4G19990.2 | 28.358 | 268 | 185 | 4 | 219 | 483 | 163 | 426 | 1.16e-26 | 117 |
Find 114 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGCTGAGTTGGACTTTA+AGG | 0.133287 | 5_1:-47916671 | Msa0734220:CDS |
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5_1:-47916980 | Msa0734220:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5_1:+47915873 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5_1:-47916713 | Msa0734220:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5_1:-47917764 | Msa0734220:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5_1:-47917261 | Msa0734220:intron |
| ACCAGCCTGGTTTGTGTATA+TGG | 0.235924 | 5_1:+47917116 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5_1:-47917228 | Msa0734220:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5_1:+47917134 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5_1:+47915879 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5_1:-47916939 | Msa0734220:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5_1:-47916027 | Msa0734220:CDS |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_1:+47917714 | None:intergenic |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 5_1:+47915811 | None:intergenic |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5_1:-47916839 | Msa0734220:CDS |
| GTCTTTAGTGCCACCATTCA+TGG | 0.375378 | 5_1:+47916151 | None:intergenic |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5_1:-47916035 | Msa0734220:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_1:-47917707 | Msa0734220:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_1:-47917715 | Msa0734220:CDS |
| TTTCAATTTATCATATCTAA+TGG | 0.390380 | 5_1:-47918627 | None:intergenic |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5_1:-47916840 | Msa0734220:CDS |
| TTCTCATACTCAACAAGAAC+TGG | 0.395633 | 5_1:+47918244 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5_1:-47915887 | Msa0734220:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_1:+47915897 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5_1:-47916539 | Msa0734220:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5_1:-47916002 | Msa0734220:CDS |
| TAAAGAATCATGGAAGTCTT+TGG | 0.408500 | 5_1:-47918473 | Msa0734220:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5_1:+47916396 | None:intergenic |
| ATAACACTGGATTCTCTGTT+AGG | 0.414157 | 5_1:-47918402 | Msa0734220:CDS |
| GGGTTGTCACAGTCGACATT+AGG | 0.419786 | 5_1:-47916361 | Msa0734220:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5_1:+47916395 | None:intergenic |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_1:-47918067 | Msa0734220:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_1:-47918185 | Msa0734220:CDS |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_1:-47918202 | Msa0734220:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5_1:+47916218 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5_1:-47918319 | Msa0734220:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_1:-47918037 | Msa0734220:CDS |
| ATCTGAGAGTGGACAATTGA+CGG | 0.452529 | 5_1:-47918548 | Msa0734220:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5_1:-47917049 | Msa0734220:CDS |
| GGCCTACTTCGGACTTTAAG+TGG | 0.458978 | 5_1:-47916885 | Msa0734220:CDS |
| ACAAAATAAGAAATCGGATA+AGG | 0.469178 | 5_1:-47918353 | Msa0734220:CDS |
| TGGTTTGTGTATATGGTTTG+AGG | 0.473582 | 5_1:+47917123 | None:intergenic |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5_1:-47917992 | Msa0734220:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5_1:+47916537 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_1:+47918208 | None:intergenic |
| TTTAATTATGCATATAACAC+TGG | 0.485542 | 5_1:-47918415 | Msa0734220:CDS |
| TCTAATGACAACTCGTCAAA+AGG | 0.488137 | 5_1:-47917924 | Msa0734220:CDS |
| CTCAAGTAGCACAAATGCTC+TGG | 0.489977 | 5_1:+47918097 | None:intergenic |
| CAATTCACAAAATAAGAAAT+CGG | 0.490263 | 5_1:-47918359 | Msa0734220:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5_1:-47916523 | Msa0734220:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5_1:+47917248 | None:intergenic |
| CTGTCTATGAACCATCTGTT+GGG | 0.491412 | 5_1:-47915926 | Msa0734220:CDS |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5_1:-47916938 | Msa0734220:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_1:-47917911 | Msa0734220:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5_1:-47916699 | Msa0734220:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5_1:+47916619 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5_1:-47918005 | Msa0734220:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5_1:+47917819 | None:intergenic |
| AAATGCTCTGGTTTATGTAA+TGG | 0.504865 | 5_1:+47918109 | None:intergenic |
| CTCATTCAAATCGTATGCAT+TGG | 0.507227 | 5_1:-47916852 | Msa0734220:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5_1:-47916382 | Msa0734220:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.508080 | 5_1:+47917953 | None:intergenic |
| AAGCTGAAATCCACCATGAA+TGG | 0.508392 | 5_1:-47916164 | Msa0734220:CDS |
| GAGGGATAATCATGCTGAGT+TGG | 0.508852 | 5_1:-47916680 | Msa0734220:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5_1:-47916834 | Msa0734220:CDS |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5_1:+47916402 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_1:+47916731 | None:intergenic |
| TGTCTATAAGATATATATGT+GGG | 0.523740 | 5_1:-47918149 | Msa0734220:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5_1:-47916381 | Msa0734220:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5_1:+47916542 | None:intergenic |
| GACAGAAATTCCTTATAGCT+CGG | 0.533906 | 5_1:-47915821 | Msa0734220:CDS |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5_1:-47918308 | Msa0734220:CDS |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_1:+47916736 | None:intergenic |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5_1:-47916522 | Msa0734220:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_1:-47918307 | Msa0734220:CDS |
| CATTTAGTGATAAAGAATCA+TGG | 0.546005 | 5_1:-47918483 | Msa0734220:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.552952 | 5_1:+47917103 | None:intergenic |
| ACCATATACACAAACCAGGC+TGG | 0.555185 | 5_1:-47917117 | Msa0734220:CDS |
| ATGTCTATAAGATATATATG+TGG | 0.556609 | 5_1:-47918150 | Msa0734220:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_1:-47917857 | Msa0734220:CDS |
| TGAAAATTCAGTTATTGATG+CGG | 0.565546 | 5_1:-47918524 | Msa0734220:CDS |
| GCTGTCTATGAACCATCTGT+TGG | 0.568181 | 5_1:-47915927 | Msa0734220:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5_1:-47917989 | Msa0734220:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.571672 | 5_1:-47916075 | Msa0734220:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5_1:+47916618 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5_1:+47915915 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.585686 | 5_1:-47915796 | Msa0734220:CDS |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5_1:+47916597 | None:intergenic |
| ATATTAACTTCATCTGAGAG+TGG | 0.588105 | 5_1:-47918559 | Msa0734220:CDS |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5_1:-47917998 | Msa0734220:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5_1:-47916034 | Msa0734220:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5_1:-47916039 | Msa0734220:CDS |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5_1:+47915959 | None:intergenic |
| GACAACTCGTCAAAAGGAGA+TGG | 0.599038 | 5_1:-47917918 | Msa0734220:CDS |
| TTGAAGAAAACCTTTCCCCA+AGG | 0.599681 | 5_1:-47916412 | Msa0734220:CDS |
| TTGATATCGTTGTGCTTGAG+TGG | 0.601464 | 5_1:+47916127 | None:intergenic |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5_1:-47918004 | Msa0734220:CDS |
| TTTAGTGCCACCATTCATGG+TGG | 0.602079 | 5_1:+47916154 | None:intergenic |
| AACTCGTCAAAAGGAGATGG+TGG | 0.603142 | 5_1:-47917915 | Msa0734220:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5_1:-47916072 | Msa0734220:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5_1:-47916621 | Msa0734220:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5_1:-47916536 | Msa0734220:CDS |
| AGAACTGGACTGTCACATGT+TGG | 0.620791 | 5_1:+47918259 | None:intergenic |
| AGCCACTTAAAGTCCGAAGT+AGG | 0.621799 | 5_1:+47916883 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5_1:-47917984 | Msa0734220:CDS |
| CTGAAATCCACCATGAATGG+TGG | 0.625313 | 5_1:-47916161 | Msa0734220:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5_1:+47916397 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5_1:-47917048 | Msa0734220:CDS |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_1:-47916698 | Msa0734220:CDS |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5_1:+47916577 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5_1:-47916050 | Msa0734220:CDS |
| TCAAACCATATACACAAACC+AGG | 0.682573 | 5_1:-47917121 | Msa0734220:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5_1:-47916438 | Msa0734220:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5_1:-47916437 | Msa0734220:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTAATTATGCATATAACAC+TGG | - | chr5_1:47915980-47915999 | Msa0734220:CDS | 20.0% |
| !! | CAATTCACAAAATAAGAAAT+CGG | - | chr5_1:47916036-47916055 | Msa0734220:CDS | 20.0% |
| !! | ATGTCTATAAGATATATATG+TGG | - | chr5_1:47916245-47916264 | Msa0734220:intron | 20.0% |
| !! | TGTCTATAAGATATATATGT+GGG | - | chr5_1:47916246-47916265 | Msa0734220:intron | 20.0% |
| !!! | TGAATGTTTATATTGATTGA+AGG | - | chr5_1:47916835-47916854 | Msa0734220:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5_1:47916863-47916882 | Msa0734220:CDS | 20.0% |
| !!! | ATGATGAAAAACTGTTTTAA+TGG | - | chr5_1:47917485-47917504 | Msa0734220:intron | 20.0% |
| ! | TGAAAATTCAGTTATTGATG+CGG | - | chr5_1:47915871-47915890 | Msa0734220:CDS | 25.0% |
| ! | CATTTAGTGATAAAGAATCA+TGG | - | chr5_1:47915912-47915931 | Msa0734220:CDS | 25.0% |
| !!! | CTTATTTTGTGAATTGTTCT+TGG | + | chr5_1:47916032-47916051 | None:intergenic | 25.0% |
| ! | ACAAAATAAGAAATCGGATA+AGG | - | chr5_1:47916042-47916061 | Msa0734220:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5_1:47916358-47916377 | Msa0734220:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr5_1:47916680-47916699 | Msa0734220:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5_1:47916706-47916725 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5_1:47916753-47916772 | Msa0734220:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5_1:47916855-47916874 | Msa0734220:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5_1:47916862-47916881 | Msa0734220:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5_1:47917111-47917130 | Msa0734220:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr5_1:47917323-47917342 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr5_1:47917415-47917434 | Msa0734220:intron | 25.0% |
| !!! | TGAAAAACTGTTTTAATGGA+AGG | - | chr5_1:47917489-47917508 | Msa0734220:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr5_1:47917682-47917701 | Msa0734220:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr5_1:47917821-47917840 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr5_1:47917856-47917875 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr5_1:47917856-47917875 | Msa0734220:CDS | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr5_1:47917957-47917976 | Msa0734220:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr5_1:47917958-47917977 | Msa0734220:CDS | 25.0% |
| ATATTAACTTCATCTGAGAG+TGG | - | chr5_1:47915836-47915855 | Msa0734220:CDS | 30.0% | |
| TAAAGAATCATGGAAGTCTT+TGG | - | chr5_1:47915922-47915941 | Msa0734220:CDS | 30.0% | |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5_1:47916087-47916106 | Msa0734220:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5_1:47916088-47916107 | Msa0734220:CDS | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5_1:47916177-47916196 | Msa0734220:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5_1:47916210-47916229 | Msa0734220:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr5_1:47916289-47916308 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5_1:47916391-47916410 | Msa0734220:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5_1:47916435-47916454 | Msa0734220:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5_1:47916445-47916464 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5_1:47916559-47916578 | None:intergenic | 30.0% | |
| !!! | AAGACATAGCCAGTATTTTT+TGG | - | chr5_1:47916593-47916612 | Msa0734220:CDS | 30.0% |
| !!! | AGACATAGCCAGTATTTTTT+GGG | - | chr5_1:47916594-47916613 | Msa0734220:CDS | 30.0% |
| CAACAAGATTATGCTCTATT+TGG | - | chr5_1:47916631-47916650 | Msa0734220:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5_1:47916684-47916703 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5_1:47916688-47916707 | Msa0734220:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5_1:47916767-47916786 | Msa0734220:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5_1:47916792-47916811 | Msa0734220:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr5_1:47916926-47916945 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr5_1:47917070-47917089 | Msa0734220:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5_1:47917150-47917169 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr5_1:47917264-47917283 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr5_1:47917314-47917333 | Msa0734220:intron | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr5_1:47917326-47917345 | Msa0734220:intron | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr5_1:47917371-47917390 | Msa0734220:intron | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr5_1:47917456-47917475 | Msa0734220:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr5_1:47917457-47917476 | Msa0734220:intron | 30.0% | |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr5_1:47917667-47917686 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr5_1:47917801-47917820 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr5_1:47917861-47917880 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr5_1:47917859-47917878 | Msa0734220:CDS | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5_1:47917916-47917935 | Msa0734220:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr5_1:47918001-47918020 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr5_1:47918002-47918021 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr5_1:47918013-47918032 | Msa0734220:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr5_1:47918014-47918033 | Msa0734220:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr5_1:47918110-47918129 | Msa0734220:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5_1:47918113-47918132 | Msa0734220:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5_1:47918178-47918197 | Msa0734220:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr5_1:47918345-47918364 | Msa0734220:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr5_1:47918393-47918412 | Msa0734220:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5_1:47918501-47918520 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr5_1:47918508-47918527 | Msa0734220:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr5_1:47918519-47918538 | None:intergenic | 30.0% | |
| !!! | GTGTTTGTTGCTGTTTTCAA+TGG | - | chr5_1:47915808-47915827 | Msa0734220:CDS | 35.0% |
| ATAACACTGGATTCTCTGTT+AGG | - | chr5_1:47915993-47916012 | Msa0734220:CDS | 35.0% | |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5_1:47916076-47916095 | Msa0734220:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5_1:47916113-47916132 | Msa0734220:CDS | 35.0% | |
| TTCTCATACTCAACAAGAAC+TGG | + | chr5_1:47916154-47916173 | None:intergenic | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5_1:47916171-47916190 | Msa0734220:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5_1:47916176-47916195 | Msa0734220:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5_1:47916328-47916347 | Msa0734220:intron | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5_1:47916390-47916409 | Msa0734220:CDS | 35.0% | |
| TCTAATGACAACTCGTCAAA+AGG | - | chr5_1:47916471-47916490 | Msa0734220:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5_1:47916773-47916792 | Msa0734220:CDS | 35.0% |
| CATAAATTCCAAGGCAAGAT+AGG | + | chr5_1:47916893-47916912 | None:intergenic | 35.0% | |
| TGTACAGAGCATAAATTCCA+AGG | + | chr5_1:47916902-47916921 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5_1:47917167-47917186 | Msa0734220:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr5_1:47917210-47917229 | Msa0734220:CDS | 35.0% |
| ! | TGGTTTGTGTATATGGTTTG+AGG | + | chr5_1:47917275-47917294 | None:intergenic | 35.0% |
| TCAAACCATATACACAAACC+AGG | - | chr5_1:47917274-47917293 | Msa0734220:intron | 35.0% | |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr5_1:47917339-47917358 | Msa0734220:intron | 35.0% |
| ! | TTTTAATGGAAGGCCTACTT+CGG | - | chr5_1:47917499-47917518 | Msa0734220:intron | 35.0% |
| CTCATTCAAATCGTATGCAT+TGG | - | chr5_1:47917543-47917562 | Msa0734220:intron | 35.0% | |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr5_1:47917556-47917575 | Msa0734220:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr5_1:47917626-47917645 | Msa0734220:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr5_1:47917696-47917715 | Msa0734220:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr5_1:47917697-47917716 | Msa0734220:intron | 35.0% | |
| CGATTATGATCTTCAAACCT+TGG | + | chr5_1:47918003-47918022 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5_1:47918120-47918139 | Msa0734220:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr5_1:47918180-47918199 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5_1:47918181-47918200 | Msa0734220:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr5_1:47918447-47918466 | None:intergenic | 35.0% |
| GACAGAAATTCCTTATAGCT+CGG | - | chr5_1:47918574-47918593 | Msa0734220:exon | 35.0% | |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr5_1:47918599-47918618 | Msa0734220:five_prime_UTR | 35.0% | |
| ATCTGAGAGTGGACAATTGA+CGG | - | chr5_1:47915847-47915866 | Msa0734220:CDS | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5_1:47916127-47916146 | None:intergenic | 40.0% |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr5_1:47916397-47916416 | Msa0734220:CDS | 40.0% |
| TCCATCTGCCCAAAAAATAC+TGG | + | chr5_1:47916605-47916624 | None:intergenic | 40.0% | |
| ATTTATGCTCTGTACAGCCA+TGG | - | chr5_1:47916906-47916925 | Msa0734220:CDS | 40.0% | |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5_1:47917016-47917035 | Msa0734220:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5_1:47917020-47917039 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr5_1:47917134-47917153 | Msa0734220:CDS | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr5_1:47917555-47917574 | Msa0734220:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr5_1:47917662-47917681 | None:intergenic | 40.0% | |
| ! | TCATGCTGAGTTGGACTTTA+AGG | - | chr5_1:47917724-47917743 | Msa0734220:CDS | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr5_1:47917872-47917891 | Msa0734220:CDS | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr5_1:47917873-47917892 | Msa0734220:CDS | 40.0% | |
| TTGAAGAAAACCTTTCCCCA+AGG | - | chr5_1:47917983-47918002 | Msa0734220:CDS | 40.0% | |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr5_1:47918076-47918095 | Msa0734220:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr5_1:47918077-47918096 | Msa0734220:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5_1:47918123-47918142 | Msa0734220:CDS | 40.0% |
| AAGCTGAAATCCACCATGAA+TGG | - | chr5_1:47918231-47918250 | Msa0734220:CDS | 40.0% | |
| TTGATATCGTTGTGCTTGAG+TGG | + | chr5_1:47918271-47918290 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr5_1:47918356-47918375 | Msa0734220:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr5_1:47918439-47918458 | None:intergenic | 40.0% |
| CTGTCTATGAACCATCTGTT+GGG | - | chr5_1:47918469-47918488 | Msa0734220:CDS | 40.0% | |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr5_1:47918525-47918544 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr5_1:47918587-47918606 | None:intergenic | 40.0% | |
| AGAACTGGACTGTCACATGT+TGG | + | chr5_1:47916139-47916158 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5_1:47916181-47916200 | Msa0734220:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5_1:47916190-47916209 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5_1:47916193-47916212 | Msa0734220:CDS | 45.0% |
| CTCAAGTAGCACAAATGCTC+TGG | + | chr5_1:47916301-47916320 | None:intergenic | 45.0% | |
| GACAACTCGTCAAAAGGAGA+TGG | - | chr5_1:47916477-47916496 | Msa0734220:CDS | 45.0% | |
| AACTCGTCAAAAGGAGATGG+TGG | - | chr5_1:47916480-47916499 | Msa0734220:CDS | 45.0% | |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5_1:47916538-47916557 | Msa0734220:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr5_1:47916579-47916598 | None:intergenic | 45.0% | |
| !!! | GCCAGTATTTTTTGGGCAGA+TGG | - | chr5_1:47916601-47916620 | Msa0734220:CDS | 45.0% |
| ACCATATACACAAACCAGGC+TGG | - | chr5_1:47917278-47917297 | Msa0734220:intron | 45.0% | |
| ! | ACCAGCCTGGTTTGTGTATA+TGG | + | chr5_1:47917282-47917301 | None:intergenic | 45.0% |
| AGCCACTTAAAGTCCGAAGT+AGG | + | chr5_1:47917515-47917534 | None:intergenic | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr5_1:47917561-47917580 | Msa0734220:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr5_1:47917578-47917597 | Msa0734220:intron | 45.0% |
| GAGGGATAATCATGCTGAGT+TGG | - | chr5_1:47917715-47917734 | Msa0734220:CDS | 45.0% | |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr5_1:47917774-47917793 | Msa0734220:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr5_1:47917996-47918015 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr5_1:47918078-47918097 | Msa0734220:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr5_1:47918098-47918117 | None:intergenic | 45.0% | |
| CTGAAATCCACCATGAATGG+TGG | - | chr5_1:47918234-47918253 | Msa0734220:CDS | 45.0% | |
| TTTAGTGCCACCATTCATGG+TGG | + | chr5_1:47918244-47918263 | None:intergenic | 45.0% | |
| GTCTTTAGTGCCACCATTCA+TGG | + | chr5_1:47918247-47918266 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr5_1:47918368-47918387 | Msa0734220:CDS | 45.0% | |
| GCTGTCTATGAACCATCTGT+TGG | - | chr5_1:47918468-47918487 | Msa0734220:CDS | 45.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr5_1:47916403-47916422 | Msa0734220:CDS | 50.0% |
| TGGGTGATCCTATCTTGCCT+TGG | - | chr5_1:47916882-47916901 | Msa0734220:CDS | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr5_1:47917346-47917365 | Msa0734220:intron | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr5_1:47917347-47917366 | Msa0734220:intron | 50.0% | |
| GGCCTACTTCGGACTTTAAG+TGG | - | chr5_1:47917510-47917529 | Msa0734220:intron | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr5_1:47917779-47917798 | None:intergenic | 50.0% | |
| GGGTTGTCACAGTCGACATT+AGG | - | chr5_1:47918034-47918053 | Msa0734220:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr5_1:47918320-47918339 | Msa0734220:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr5_1:47918361-47918380 | Msa0734220:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr5_1:47918483-47918502 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr5_1:47916406-47916425 | Msa0734220:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5_1:47916484-47916503 | Msa0734220:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr5_1:47917295-47917314 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr5_1:47917780-47917799 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr5_1:47918360-47918379 | Msa0734220:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr5_1:47918374-47918393 | Msa0734220:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr5_1:47916411-47916430 | Msa0734220:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr5_1:47918323-47918342 | Msa0734220:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 47915782 | 47918635 | 47915782 | ID=Msa0734220;Name=Msa0734220 |
| chr5_1 | mRNA | 47915782 | 47918635 | 47915782 | ID=Msa0734220-mRNA-1;Parent=Msa0734220;Name=Msa0734220-mRNA-1;_AED=0.05;_eAED=0.05;_QI=45|0.5|0.33|1|1|1|3|0|761 |
| chr5_1 | exon | 47915782 | 47916246 | 47915782 | ID=Msa0734220-mRNA-1:exon:13736;Parent=Msa0734220-mRNA-1 |
| chr5_1 | exon | 47916336 | 47917273 | 47916336 | ID=Msa0734220-mRNA-1:exon:13735;Parent=Msa0734220-mRNA-1 |
| chr5_1 | exon | 47917708 | 47918635 | 47917708 | ID=Msa0734220-mRNA-1:exon:13734;Parent=Msa0734220-mRNA-1 |
| chr5_1 | five_prime_UTR | 47918591 | 47918635 | 47918591 | ID=Msa0734220-mRNA-1:five_prime_utr;Parent=Msa0734220-mRNA-1 |
| chr5_1 | CDS | 47917708 | 47918590 | 47917708 | ID=Msa0734220-mRNA-1:cds;Parent=Msa0734220-mRNA-1 |
| chr5_1 | CDS | 47916336 | 47917273 | 47916336 | ID=Msa0734220-mRNA-1:cds;Parent=Msa0734220-mRNA-1 |
| chr5_1 | CDS | 47915782 | 47916246 | 47915782 | ID=Msa0734220-mRNA-1:cds;Parent=Msa0734220-mRNA-1 |
| Gene Sequence |
| Protein sequence |
