Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734560 | XP_039685680.1 | 86.771 | 703 | 89 | 2 | 58 | 756 | 97 | 799 | 0.0 | 1255 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734560 | sp|Q9SZL8|FRS5_ARATH | 27.568 | 584 | 357 | 11 | 61 | 642 | 118 | 637 | 2.71e-65 | 235 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734560 | D3YBB9 | 79.253 | 723 | 134 | 3 | 58 | 772 | 129 | 843 | 0.0 | 1199 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0734560 | TF | FAR1 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734560 | MtrunA17_Chr3g0088371 | 82.065 | 184 | 30 | 1 | 595 | 775 | 1 | 184 | 3.58e-101 | 310 |
| Msa0734560 | MtrunA17_Chr3g0082121 | 32.407 | 648 | 354 | 18 | 61 | 704 | 88 | 655 | 4.23e-97 | 317 |
| Msa0734560 | MtrunA17_Chr2g0324011 | 30.822 | 584 | 336 | 11 | 61 | 642 | 54 | 571 | 1.00e-94 | 307 |
| Msa0734560 | MtrunA17_Chr1g0202341 | 29.483 | 580 | 336 | 14 | 64 | 639 | 99 | 609 | 1.24e-74 | 256 |
| Msa0734560 | MtrunA17_Chr1g0203721 | 26.152 | 673 | 411 | 14 | 61 | 716 | 108 | 711 | 1.78e-69 | 245 |
| Msa0734560 | MtrunA17_Chr8g0363841 | 28.205 | 585 | 348 | 14 | 62 | 642 | 64 | 580 | 1.63e-68 | 239 |
| Msa0734560 | MtrunA17_Chr5g0448761 | 25.229 | 654 | 414 | 12 | 61 | 705 | 105 | 692 | 3.09e-66 | 234 |
| Msa0734560 | MtrunA17_Chr2g0296781 | 28.141 | 597 | 365 | 17 | 98 | 685 | 61 | 602 | 2.61e-64 | 228 |
| Msa0734560 | MtrunA17_Chr6g0477261 | 29.032 | 527 | 316 | 14 | 157 | 676 | 7 | 482 | 1.59e-63 | 224 |
| Msa0734560 | MtrunA17_Chr1g0164591 | 35.312 | 320 | 192 | 4 | 108 | 425 | 1 | 307 | 1.12e-62 | 213 |
| Msa0734560 | MtrunA17_Chr6g0458391 | 26.655 | 589 | 329 | 13 | 61 | 639 | 270 | 765 | 2.44e-62 | 223 |
| Msa0734560 | MtrunA17_Chr2g0287651 | 25.729 | 583 | 358 | 12 | 62 | 639 | 120 | 632 | 8.72e-57 | 209 |
| Msa0734560 | MtrunA17_Chr5g0441581 | 25.375 | 666 | 417 | 16 | 95 | 750 | 94 | 689 | 3.59e-54 | 199 |
| Msa0734560 | MtrunA17_Chr2g0329031 | 25.191 | 655 | 400 | 16 | 97 | 734 | 78 | 659 | 2.96e-52 | 194 |
| Msa0734560 | MtrunA17_Chr3g0118611 | 27.634 | 503 | 304 | 11 | 198 | 696 | 111 | 557 | 4.17e-52 | 194 |
| Msa0734560 | MtrunA17_Chr1g0207551 | 25.535 | 607 | 374 | 15 | 100 | 695 | 102 | 641 | 6.63e-52 | 194 |
| Msa0734560 | MtrunA17_Chr5g0440451 | 24.961 | 633 | 399 | 16 | 87 | 698 | 85 | 662 | 6.15e-51 | 192 |
| Msa0734560 | MtrunA17_Chr1g0198761 | 27.531 | 563 | 327 | 17 | 90 | 637 | 114 | 610 | 4.62e-49 | 185 |
| Msa0734560 | MtrunA17_Chr7g0258861 | 37.255 | 255 | 144 | 4 | 61 | 313 | 54 | 294 | 1.89e-48 | 173 |
| Msa0734560 | MtrunA17_Chr2g0287061 | 25.122 | 617 | 365 | 18 | 68 | 671 | 209 | 741 | 1.67e-47 | 181 |
| Msa0734560 | MtrunA17_Chr1g0203051 | 22.552 | 572 | 377 | 8 | 44 | 614 | 110 | 616 | 1.83e-47 | 179 |
| Msa0734560 | MtrunA17_Chr1g0196541 | 25.144 | 521 | 341 | 11 | 121 | 639 | 83 | 556 | 4.57e-47 | 179 |
| Msa0734560 | MtrunA17_Chr3g0080351 | 25.092 | 546 | 335 | 9 | 190 | 729 | 224 | 701 | 5.04e-46 | 177 |
| Msa0734560 | MtrunA17_Chr2g0290391 | 25.664 | 565 | 335 | 16 | 92 | 637 | 113 | 611 | 1.03e-44 | 171 |
| Msa0734560 | MtrunA17_Chr2g0276841 | 26.502 | 566 | 338 | 17 | 95 | 647 | 137 | 637 | 1.05e-42 | 166 |
| Msa0734560 | MtrunA17_Chr5g0448511 | 25.442 | 452 | 283 | 9 | 193 | 642 | 1 | 400 | 2.00e-42 | 162 |
| Msa0734560 | MtrunA17_Chr6g0475591 | 91.781 | 73 | 6 | 0 | 165 | 237 | 1 | 73 | 6.65e-41 | 144 |
| Msa0734560 | MtrunA17_Chr2g0291581 | 23.443 | 546 | 357 | 11 | 97 | 639 | 134 | 621 | 1.82e-38 | 152 |
| Msa0734560 | MtrunA17_Chr5g0431001 | 28.205 | 390 | 252 | 10 | 71 | 450 | 117 | 488 | 1.83e-38 | 150 |
| Msa0734560 | MtrunA17_Chr2g0291591 | 28.040 | 403 | 249 | 10 | 92 | 476 | 122 | 501 | 2.19e-38 | 151 |
| Msa0734560 | MtrunA17_Chr2g0294841 | 28.675 | 415 | 252 | 13 | 62 | 459 | 92 | 479 | 8.98e-34 | 139 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0734560 | AT4G38180.1 | 27.568 | 584 | 357 | 11 | 61 | 642 | 118 | 637 | 2.76e-66 | 235 |
| Msa0734560 | AT4G15090.1 | 25.723 | 622 | 395 | 12 | 100 | 718 | 121 | 678 | 1.04e-58 | 214 |
| Msa0734560 | AT4G15090.5 | 25.723 | 622 | 395 | 12 | 100 | 718 | 121 | 678 | 1.04e-58 | 214 |
| Msa0734560 | AT4G15090.3 | 25.723 | 622 | 395 | 12 | 100 | 718 | 121 | 678 | 1.04e-58 | 214 |
| Msa0734560 | AT4G15090.2 | 25.723 | 622 | 395 | 12 | 100 | 718 | 121 | 678 | 1.04e-58 | 214 |
| Msa0734560 | AT4G15090.4 | 25.723 | 622 | 395 | 12 | 100 | 718 | 121 | 678 | 1.04e-58 | 214 |
| Msa0734560 | AT2G27110.2 | 25.796 | 597 | 369 | 16 | 104 | 696 | 108 | 634 | 7.07e-52 | 195 |
| Msa0734560 | AT2G27110.1 | 25.796 | 597 | 369 | 16 | 104 | 696 | 108 | 634 | 7.07e-52 | 195 |
| Msa0734560 | AT2G27110.3 | 26.916 | 509 | 315 | 12 | 190 | 696 | 36 | 489 | 1.57e-51 | 192 |
| Msa0734560 | AT1G76320.3 | 24.417 | 643 | 394 | 16 | 60 | 696 | 41 | 597 | 6.10e-48 | 181 |
| Msa0734560 | AT3G06250.2 | 24.912 | 570 | 339 | 14 | 72 | 638 | 220 | 703 | 1.08e-47 | 181 |
| Msa0734560 | AT3G06250.1 | 24.912 | 570 | 339 | 14 | 72 | 638 | 220 | 703 | 1.08e-47 | 181 |
| Msa0734560 | AT3G06250.3 | 24.912 | 570 | 339 | 14 | 72 | 638 | 220 | 703 | 1.08e-47 | 181 |
| Msa0734560 | AT1G76320.1 | 24.417 | 643 | 394 | 16 | 60 | 696 | 41 | 597 | 1.62e-47 | 181 |
| Msa0734560 | AT1G76320.4 | 24.417 | 643 | 394 | 16 | 60 | 696 | 41 | 597 | 1.62e-47 | 181 |
| Msa0734560 | AT1G76320.2 | 24.572 | 643 | 393 | 16 | 60 | 696 | 41 | 597 | 1.68e-47 | 181 |
| Msa0734560 | AT3G22170.2 | 22.614 | 681 | 414 | 16 | 60 | 730 | 114 | 691 | 3.97e-45 | 174 |
| Msa0734560 | AT3G22170.1 | 22.614 | 681 | 414 | 16 | 60 | 730 | 114 | 691 | 3.97e-45 | 174 |
| Msa0734560 | AT4G38170.1 | 24.740 | 481 | 294 | 13 | 212 | 680 | 24 | 448 | 3.85e-44 | 168 |
| Msa0734560 | AT5G18960.2 | 24.301 | 572 | 343 | 16 | 72 | 638 | 241 | 727 | 1.23e-41 | 163 |
| Msa0734560 | AT5G18960.1 | 24.301 | 572 | 343 | 16 | 72 | 638 | 241 | 727 | 1.23e-41 | 163 |
| Msa0734560 | AT1G10240.2 | 25.403 | 559 | 341 | 17 | 90 | 636 | 110 | 604 | 6.41e-39 | 154 |
| Msa0734560 | AT1G10240.1 | 25.403 | 559 | 341 | 17 | 90 | 636 | 110 | 604 | 6.41e-39 | 154 |
| Msa0734560 | AT5G28530.1 | 24.579 | 594 | 356 | 17 | 62 | 637 | 100 | 619 | 1.08e-38 | 154 |
| Msa0734560 | AT5G28530.3 | 24.411 | 594 | 353 | 18 | 62 | 637 | 100 | 615 | 7.24e-38 | 151 |
| Msa0734560 | AT5G28530.2 | 24.411 | 594 | 353 | 18 | 62 | 637 | 100 | 615 | 7.24e-38 | 151 |
| Msa0734560 | AT2G32250.5 | 22.939 | 667 | 382 | 18 | 60 | 720 | 82 | 622 | 8.81e-37 | 148 |
| Msa0734560 | AT2G32250.7 | 22.939 | 667 | 382 | 18 | 60 | 720 | 41 | 581 | 9.38e-37 | 148 |
| Msa0734560 | AT2G32250.8 | 22.939 | 667 | 382 | 18 | 60 | 720 | 41 | 581 | 9.99e-37 | 148 |
| Msa0734560 | AT2G32250.6 | 22.939 | 667 | 382 | 18 | 60 | 720 | 82 | 622 | 1.39e-36 | 148 |
| Msa0734560 | AT2G32250.1 | 22.939 | 667 | 382 | 18 | 60 | 720 | 82 | 622 | 1.39e-36 | 148 |
| Msa0734560 | AT2G32250.3 | 22.939 | 667 | 382 | 18 | 60 | 720 | 82 | 622 | 1.39e-36 | 148 |
| Msa0734560 | AT2G32250.2 | 22.939 | 667 | 382 | 18 | 60 | 720 | 82 | 622 | 1.48e-36 | 148 |
| Msa0734560 | AT2G32250.4 | 22.939 | 667 | 382 | 18 | 60 | 720 | 82 | 622 | 1.48e-36 | 148 |
| Msa0734560 | AT1G80010.1 | 25.328 | 458 | 288 | 14 | 187 | 639 | 253 | 661 | 4.46e-33 | 137 |
| Msa0734560 | AT1G52520.1 | 22.828 | 587 | 363 | 18 | 63 | 639 | 132 | 638 | 2.46e-30 | 128 |
| Msa0734560 | AT4G19990.1 | 27.985 | 268 | 186 | 3 | 196 | 460 | 106 | 369 | 7.68e-27 | 117 |
| Msa0734560 | AT4G19990.1 | 35.338 | 133 | 72 | 3 | 568 | 698 | 438 | 558 | 1.70e-12 | 71.6 |
| Msa0734560 | AT4G19990.5 | 27.985 | 268 | 186 | 3 | 196 | 460 | 163 | 426 | 8.67e-27 | 117 |
| Msa0734560 | AT4G19990.5 | 35.338 | 133 | 72 | 3 | 568 | 698 | 495 | 615 | 1.87e-12 | 71.6 |
| Msa0734560 | AT4G19990.7 | 27.985 | 268 | 186 | 3 | 196 | 460 | 177 | 440 | 8.97e-27 | 117 |
| Msa0734560 | AT4G19990.7 | 35.338 | 133 | 72 | 3 | 568 | 698 | 509 | 629 | 2.06e-12 | 71.2 |
| Msa0734560 | AT4G19990.3 | 27.985 | 268 | 186 | 3 | 196 | 460 | 163 | 426 | 1.02e-26 | 117 |
| Msa0734560 | AT4G19990.3 | 35.338 | 133 | 72 | 3 | 568 | 698 | 495 | 615 | 1.87e-12 | 71.6 |
| Msa0734560 | AT4G19990.4 | 27.985 | 268 | 186 | 3 | 196 | 460 | 163 | 426 | 1.02e-26 | 117 |
| Msa0734560 | AT4G19990.4 | 35.338 | 133 | 72 | 3 | 568 | 698 | 495 | 615 | 1.87e-12 | 71.6 |
| Msa0734560 | AT4G19990.6 | 27.985 | 268 | 186 | 3 | 196 | 460 | 163 | 426 | 1.21e-26 | 117 |
| Msa0734560 | AT4G19990.6 | 35.338 | 133 | 72 | 3 | 568 | 698 | 495 | 615 | 1.87e-12 | 71.6 |
| Msa0734560 | AT4G19990.2 | 27.985 | 268 | 186 | 3 | 196 | 460 | 163 | 426 | 1.21e-26 | 117 |
| Msa0734560 | AT4G19990.2 | 35.338 | 133 | 72 | 3 | 568 | 698 | 495 | 615 | 1.87e-12 | 71.6 |
| Msa0734560 | AT5G28530.4 | 22.089 | 584 | 320 | 20 | 62 | 637 | 100 | 556 | 1.05e-19 | 94.4 |
| Msa0734560 | AT5G28530.5 | 21.918 | 584 | 317 | 21 | 62 | 637 | 100 | 552 | 6.09e-19 | 92.0 |
Find 123 sgRNAs with CRISPR-Local
Find 179 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCGATGAGTTAACTAATT+TGG | 0.156761 | 5_1:-48742906 | Msa0734560:CDS |
| AGTCGCTTCTTTGACCTAAT+TGG | 0.186128 | 5_1:+48741771 | None:intergenic |
| CTTTAGTCATTTCAACATTA+TGG | 0.194287 | 5_1:-48742639 | Msa0734560:CDS |
| CAACAAGATTATGCTCTATT+TGG | 0.198611 | 5_1:-48743695 | Msa0734560:CDS |
| TTCATTTCAGCTGCCTTTCT+TGG | 0.201003 | 5_1:-48743187 | Msa0734560:intron |
| TTATTCTTTAATGGGCTTCT+TGG | 0.244334 | 5_1:-48744532 | None:intergenic |
| CATCGTAAGAGTGTGTTATT+TGG | 0.276792 | 5_1:-48743154 | Msa0734560:CDS |
| TATGGTTTGAGGTTTCTTAT+TGG | 0.280533 | 5_1:+48743060 | None:intergenic |
| TTCTTTGACCTAATTGGATT+TGG | 0.299426 | 5_1:+48741777 | None:intergenic |
| AATCAGATTTCGACTACAAT+TGG | 0.318540 | 5_1:-48742865 | Msa0734560:CDS |
| TGTTCTTGAGGCAGGGAAAA+AGG | 0.322946 | 5_1:-48741925 | Msa0734560:CDS |
| GAGGGATAATCATGCTGATT+TGG | 0.329486 | 5_1:-48742606 | Msa0734560:CDS |
| ATAAATGTCTCTTGGGCCTT+AGG | 0.337690 | 5_1:+48744486 | None:intergenic |
| ACCAGCCTGGTCTGTGTATA+TGG | 0.341000 | 5_1:+48743042 | None:intergenic |
| GCCGATATTTATTGTTTGTT+CGG | 0.341758 | 5_1:+48743645 | None:intergenic |
| TTGGTTTGAATATTATCTTC+TGG | 0.345646 | 5_1:-48741528 | Msa0734560:three_prime_UTR |
| TTTGCTTCTTCCGAGCTATA+AGG | 0.345757 | 5_1:+48741709 | None:intergenic |
| GGAAAAGGGTTCGACCCATT+TGG | 0.353135 | 5_1:+48744507 | None:intergenic |
| GGTTTCGAATGTTGATGTTT+TGG | 0.354913 | 5_1:-48742342 | Msa0734560:CDS |
| GTCTCTTGGGCCTTAGGAAA+AGG | 0.366850 | 5_1:+48744492 | None:intergenic |
| TCATGCTGATTTGGATTTCA+AGG | 0.367166 | 5_1:-48742597 | Msa0734560:CDS |
| TATGCATTGGTCTTCAGTTT+GGG | 0.370760 | 5_1:-48742765 | Msa0734560:CDS |
| AGCATTTAATAAATGTCTCT+TGG | 0.384082 | 5_1:+48744478 | None:intergenic |
| CTCAACGGTGTTCTTGAGGC+AGG | 0.386173 | 5_1:-48741933 | Msa0734560:CDS |
| AACAATAAATATCGGCCATT+AGG | 0.388497 | 5_1:-48743638 | Msa0734560:intron |
| ACCGAACAAACAATAAATAT+CGG | 0.389395 | 5_1:-48743646 | Msa0734560:CDS |
| GTATGCATTGGTCTTCAGTT+TGG | 0.392120 | 5_1:-48742766 | Msa0734560:CDS |
| GTCTTTAGTGCCAACATTCA+TGG | 0.395146 | 5_1:+48742049 | None:intergenic |
| AAGAAAGACCAAATCCAATT+AGG | 0.397771 | 5_1:-48741785 | Msa0734560:CDS |
| TTTGGTCTTTCTTTGAACTT+TGG | 0.398856 | 5_1:+48741795 | None:intergenic |
| TTCCTTCAAATACTATTATG+AGG | 0.399583 | 5_1:-48742465 | Msa0734560:CDS |
| GAGGAGTTTCTTATTTCTAA+AGG | 0.403538 | 5_1:-48741900 | Msa0734560:CDS |
| CATGTCGTATGTTTGAGAAC+CGG | 0.411671 | 5_1:-48742217 | Msa0734560:CDS |
| GATTATGATCTTCAAACCTT+GGG | 0.413114 | 5_1:+48742294 | None:intergenic |
| ATGGGCTTCTTGGATCCAAA+TGG | 0.419672 | 5_1:-48744522 | Msa0734560:CDS |
| CGATTATGATCTTCAAACCT+TGG | 0.425681 | 5_1:+48742293 | None:intergenic |
| GGCCTACTTCAGACTTTAAG+TGG | 0.425957 | 5_1:-48742811 | Msa0734560:CDS |
| CGAGAAGTAAATGAAGTTCA+AGG | 0.430014 | 5_1:-48743998 | Msa0734560:CDS |
| AGCTGGAATATATTTGAAGT+TGG | 0.433136 | 5_1:-48744116 | Msa0734560:CDS |
| GCATTTAATAAATGTCTCTT+GGG | 0.433468 | 5_1:+48744479 | None:intergenic |
| TGAATGTCTATAAGATATAT+AGG | 0.445219 | 5_1:-48744084 | Msa0734560:CDS |
| TGGTCTGTGTATATGGTTTG+AGG | 0.447350 | 5_1:+48743049 | None:intergenic |
| GAAAGGGTTGGTTGTAAAGC+TGG | 0.447509 | 5_1:-48744133 | Msa0734560:CDS |
| CGCTTTAAAACATATTGTGC+AGG | 0.447633 | 5_1:+48742116 | None:intergenic |
| CGTTATGCTTGTAACAAAGA+AGG | 0.449439 | 5_1:-48744250 | Msa0734560:CDS |
| GCTTTAATAAATTCTAAAGC+TGG | 0.450264 | 5_1:-48743968 | Msa0734560:CDS |
| TGGTCTTTGCTCATGGCACA+TGG | 0.452802 | 5_1:-48742975 | Msa0734560:CDS |
| AGAACAATCTGAGAACGTTC+TGG | 0.459981 | 5_1:+48744385 | None:intergenic |
| CTCAAGTAGCGCAAATGCTC+TGG | 0.460440 | 5_1:+48744028 | None:intergenic |
| ATGTCGTATGTTTGAGAACC+GGG | 0.461344 | 5_1:-48742216 | Msa0734560:CDS |
| TCTCTTGGGCCTTAGGAAAA+GGG | 0.464631 | 5_1:+48744493 | None:intergenic |
| AATTCTTGATTGTTATGCAT+TGG | 0.467731 | 5_1:-48741547 | Msa0734560:three_prime_UTR |
| GGGTTGTCACAGTCGACATT+GGG | 0.480993 | 5_1:-48742259 | Msa0734560:CDS |
| GAAGTGATGGGTCAAGGAGT+TGG | 0.484292 | 5_1:-48743923 | Msa0734560:CDS |
| CTCCTCATAATAGTATTTGA+AGG | 0.485089 | 5_1:+48742463 | None:intergenic |
| TTACAACCAACCCTTTCCTC+TGG | 0.485330 | 5_1:+48744139 | None:intergenic |
| CTGTCTGTGAACCATCTGTT+GGG | 0.487793 | 5_1:-48741824 | Msa0734560:CDS |
| TCTAATGACGACTCGTCAAA+AGG | 0.488508 | 5_1:-48743855 | Msa0734560:CDS |
| TATGAGGAGGACACAACAAA+AGG | 0.490908 | 5_1:-48742449 | Msa0734560:CDS |
| ATGATTGTCAAAACCAAGAA+AGG | 0.491378 | 5_1:+48743174 | None:intergenic |
| ATCAGATTTCGACTACAATT+GGG | 0.491708 | 5_1:-48742864 | Msa0734560:CDS |
| CGTCAAAAGGAGATGGTGGC+TGG | 0.492100 | 5_1:-48743842 | Msa0734560:CDS |
| ACATTATGGTTCAGAGAATG+AGG | 0.494022 | 5_1:-48742625 | Msa0734560:CDS |
| GACCGCATAAGCTGACTGTT+GGG | 0.496307 | 5_1:+48742545 | None:intergenic |
| GAGAACATCTTATGAAGTGA+TGG | 0.499875 | 5_1:-48743936 | Msa0734560:CDS |
| TGTCTTCTGCAGCATCAACT+TGG | 0.502977 | 5_1:+48743750 | None:intergenic |
| GCTGTCTGTGAACCATCTGT+TGG | 0.504047 | 5_1:-48741825 | Msa0734560:CDS |
| ATCATAATCGACTTGATGAA+AGG | 0.507955 | 5_1:-48742280 | Msa0734560:CDS |
| ATTGGTCTTCAGTTTGGGTG+AGG | 0.509410 | 5_1:-48742760 | Msa0734560:CDS |
| TGGGCTTCTTGGATCCAAAT+GGG | 0.515550 | 5_1:-48744521 | Msa0734560:CDS |
| TTTAAGTCCGAAAATCGAAA+AGG | 0.518694 | 5_1:+48743884 | None:intergenic |
| GATCTTCAAACCTTGGGGAA+AGG | 0.519004 | 5_1:+48742300 | None:intergenic |
| TAAAGAATCGAACAAGTGAA+TGG | 0.519618 | 5_1:+48742657 | None:intergenic |
| TGTCTATAAGATATATAGGT+GGG | 0.523740 | 5_1:-48744080 | Msa0734560:CDS |
| TCATAATCGACTTGATGAAA+GGG | 0.526860 | 5_1:-48742279 | Msa0734560:CDS |
| AACAGAAATTCCTTATAGCT+CGG | 0.527085 | 5_1:-48741719 | Msa0734560:CDS |
| CATAATAGTATTTGAAGGAA+AGG | 0.529686 | 5_1:+48742468 | None:intergenic |
| TAACAAAGAAGGTTTCAAGA+AGG | 0.538422 | 5_1:-48744239 | Msa0734560:CDS |
| AGGGTTGTCACAGTCGACAT+TGG | 0.538587 | 5_1:-48742260 | Msa0734560:CDS |
| GTCTGCACAGCAAGAAAGCA+TGG | 0.540375 | 5_1:+48744449 | None:intergenic |
| AATCGAACAAGTGAATGGTC+TGG | 0.540971 | 5_1:+48742662 | None:intergenic |
| CTCACTCAAATCGTATGCAT+TGG | 0.541483 | 5_1:-48742778 | Msa0734560:CDS |
| ATGAGGAGGACACAACAAAA+GGG | 0.542065 | 5_1:-48742448 | Msa0734560:CDS |
| AACAAAGAAGGTTTCAAGAA+GGG | 0.545537 | 5_1:-48744238 | Msa0734560:CDS |
| AAATGCTCTGGTTTATGTAA+TGG | 0.552634 | 5_1:+48744040 | None:intergenic |
| GAAGCAAAAGAAAGATGATG+AGG | 0.554191 | 5_1:-48741694 | Msa0734560:CDS |
| ACTTCAACAACGCACCAGCC+TGG | 0.557139 | 5_1:+48743029 | None:intergenic |
| CTGAAATCCACCATGAATGT+TGG | 0.557140 | 5_1:-48742059 | Msa0734560:CDS |
| AATGAAGCTCTCTCGAAACC+AGG | 0.565261 | 5_1:-48743788 | Msa0734560:CDS |
| GTGATGGGTCAAGGAGTTGG+AGG | 0.568802 | 5_1:-48743920 | Msa0734560:CDS |
| GGACCGCATAAGCTGACTGT+TGG | 0.579264 | 5_1:+48742544 | None:intergenic |
| TTTGGTGCAGTCCCAACAGA+TGG | 0.581566 | 5_1:+48741813 | None:intergenic |
| TGGTGTATACTTGTTTACTA+CGG | 0.585960 | 5_1:+48742523 | None:intergenic |
| TCTTATGAAGTGATGGGTCA+AGG | 0.589029 | 5_1:-48743929 | Msa0734560:CDS |
| TCAACGGTGTTCTTGAGGCA+GGG | 0.590097 | 5_1:-48741932 | Msa0734560:CDS |
| ACCATATACACAGACCAGGC+TGG | 0.590176 | 5_1:-48743043 | Msa0734560:CDS |
| TACACGTGTTTGCGCAGATG+CGG | 0.590637 | 5_1:-48741973 | Msa0734560:CDS |
| ATTTCTCAACGGTGTTCTTG+AGG | 0.591378 | 5_1:-48741937 | Msa0734560:CDS |
| AAAACTGGACTGTCACATGT+TGG | 0.594301 | 5_1:+48744190 | None:intergenic |
| TGAAGACTTAGAAGGCGTAA+CGG | 0.598405 | 5_1:+48741857 | None:intergenic |
| TTGAAGGAAACCTTTCCCCA+AGG | 0.600566 | 5_1:-48742310 | Msa0734560:CDS |
| AGAACATCTTATGAAGTGAT+GGG | 0.601988 | 5_1:-48743935 | Msa0734560:CDS |
| GACGACTCGTCAAAAGGAGA+TGG | 0.604288 | 5_1:-48743849 | Msa0734560:CDS |
| ACGTGTTTGCGCAGATGCGG+AGG | 0.605934 | 5_1:-48741970 | Msa0734560:CDS |
| ATCCCAACAGTCAGCTTATG+CGG | 0.606153 | 5_1:-48742547 | Msa0734560:CDS |
| CTTCAAATACTATTATGAGG+AGG | 0.607664 | 5_1:-48742462 | Msa0734560:CDS |
| TTGATATCGTTGCGCTTCAG+TGG | 0.611060 | 5_1:+48742025 | None:intergenic |
| GACTCGTCAAAAGGAGATGG+TGG | 0.611157 | 5_1:-48743846 | Msa0734560:CDS |
| AGCCACTTAAAGTCTGAAGT+AGG | 0.619962 | 5_1:+48742809 | None:intergenic |
| GGGTCAAGGAGTTGGAGGCA+CGG | 0.621882 | 5_1:-48743915 | Msa0734560:CDS |
| ATTATGATCTTCAAACCTTG+GGG | 0.630358 | 5_1:+48742295 | None:intergenic |
| GGTCTTTGCTCATGGCACAT+GGG | 0.639768 | 5_1:-48742974 | Msa0734560:CDS |
| TTTAGTGCCAACATTCATGG+TGG | 0.641441 | 5_1:+48742052 | None:intergenic |
| CATTATGGTTCAGAGAATGA+GGG | 0.643278 | 5_1:-48742624 | Msa0734560:CDS |
| ATGTCTATAAGATATATAGG+TGG | 0.643489 | 5_1:-48744081 | Msa0734560:CDS |
| GATTTCAGCTTATCGACAGA+CGG | 0.644926 | 5_1:+48742074 | None:intergenic |
| TGAATAAATGAAAAGCAAGA+TGG | 0.655697 | 5_1:+48742503 | None:intergenic |
| GCATCTGAAATATTTCTCAA+CGG | 0.661104 | 5_1:-48741948 | Msa0734560:CDS |
| CATGTCGACATAAGAAACCC+CGG | 0.663279 | 5_1:+48742198 | None:intergenic |
| TCAAACCATATACACAGACC+AGG | 0.671057 | 5_1:-48743047 | Msa0734560:CDS |
| TGTCGTATGTTTGAGAACCG+GGG | 0.673760 | 5_1:-48742215 | Msa0734560:CDS |
| ATGTTGATAATGATAATGAG+AGG | 0.683310 | 5_1:-48742364 | Msa0734560:CDS |
| TGTTGATAATGATAATGAGA+GGG | 0.689129 | 5_1:-48742363 | Msa0734560:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCTTTAAAACATCAAATA+AGG | - | chr5_1:48741753-48741772 | Msa0734560:CDS | 15.0% |
| !! | TGAATGTTTATATTTATTGA+AGG | - | chr5_1:48742559-48742578 | Msa0734560:CDS | 15.0% |
| !!! | TGTTTTTTATGTTATAAGTT+AGG | - | chr5_1:48744405-48744424 | Msa0734560:CDS | 15.0% |
| !! | TGAATGTCTATAAGATATAT+AGG | - | chr5_1:48741966-48741985 | Msa0734560:CDS | 20.0% |
| !!! | AATTTAATGTTCTGGTTTAT+GGG | - | chr5_1:48742587-48742606 | Msa0734560:CDS | 20.0% |
| ! | GCATTTAATAAATGTCTCTT+GGG | + | chr5_1:48741574-48741593 | None:intergenic | 25.0% |
| ! | AGCATTTAATAAATGTCTCT+TGG | + | chr5_1:48741575-48741594 | None:intergenic | 25.0% |
| ! | ATGTCTATAAGATATATAGG+TGG | - | chr5_1:48741969-48741988 | Msa0734560:CDS | 25.0% |
| ! | TGTCTATAAGATATATAGGT+GGG | - | chr5_1:48741970-48741989 | Msa0734560:CDS | 25.0% |
| !!! | GCTTTAATAAATTCTAAAGC+TGG | - | chr5_1:48742082-48742101 | Msa0734560:CDS | 25.0% |
| !!! | AAGACATAGCTAGTATTTTT+TGG | - | chr5_1:48742317-48742336 | Msa0734560:CDS | 25.0% |
| !!! | AGACATAGCTAGTATTTTTT+GGG | - | chr5_1:48742318-48742337 | Msa0734560:CDS | 25.0% |
| ! | ACCGAACAAACAATAAATAT+CGG | - | chr5_1:48742404-48742423 | Msa0734560:CDS | 25.0% |
| ! | AGTACAAAATACTAACCTAA+TGG | + | chr5_1:48742430-48742449 | None:intergenic | 25.0% |
| ! | TGAAATTTGAATGAATGTTC+TGG | - | chr5_1:48742477-48742496 | Msa0734560:CDS | 25.0% |
| !! | AGGTTTAGAATTTAATGTTC+TGG | - | chr5_1:48742579-48742598 | Msa0734560:CDS | 25.0% |
| !!! | GAATTTAATGTTCTGGTTTA+TGG | - | chr5_1:48742586-48742605 | Msa0734560:CDS | 25.0% |
| !! | TGTTGTATTTTGTTCTGATT+TGG | - | chr5_1:48742840-48742859 | Msa0734560:CDS | 25.0% |
| ! | AAAACACCTTGAAAAACATT+CGG | + | chr5_1:48743052-48743071 | None:intergenic | 25.0% |
| ! | TTTCGATGAGTTAACTAATT+TGG | - | chr5_1:48743144-48743163 | Msa0734560:CDS | 25.0% |
| !!! | ATGATGAAAAACTGTTTTGA+TGG | - | chr5_1:48743214-48743233 | Msa0734560:intron | 25.0% |
| !!! | TGATGAAAAACTGTTTTGAT+GGG | - | chr5_1:48743215-48743234 | Msa0734560:intron | 25.0% |
| ! | CTTTAGTCATTTCAACATTA+TGG | - | chr5_1:48743411-48743430 | Msa0734560:intron | 25.0% |
| ! | TGAATAAATGAAAAGCAAGA+TGG | + | chr5_1:48743550-48743569 | None:intergenic | 25.0% |
| ! | CATAATAGTATTTGAAGGAA+AGG | + | chr5_1:48743585-48743604 | None:intergenic | 25.0% |
| ! | TTCCTTCAAATACTATTATG+AGG | - | chr5_1:48743585-48743604 | Msa0734560:intron | 25.0% |
| !!! | ATGTTGATAATGATAATGAG+AGG | - | chr5_1:48743686-48743705 | Msa0734560:CDS | 25.0% |
| !!! | TGTTGATAATGATAATGAGA+GGG | - | chr5_1:48743687-48743706 | Msa0734560:CDS | 25.0% |
| !!! | TGAGGTTTTAACAAATTAAG+CGG | - | chr5_1:48744374-48744393 | Msa0734560:intron | 25.0% |
| ! | TGATGCTTTAACTAAAAAAG+CGG | - | chr5_1:48744436-48744455 | Msa0734560:CDS | 25.0% |
| ! | AATTCTTGATTGTTATGCAT+TGG | - | chr5_1:48744503-48744522 | Msa0734560:CDS | 25.0% |
| TAACAAAGAAGGTTTCAAGA+AGG | - | chr5_1:48741811-48741830 | Msa0734560:CDS | 30.0% | |
| AACAAAGAAGGTTTCAAGAA+GGG | - | chr5_1:48741812-48741831 | Msa0734560:CDS | 30.0% | |
| TTCTCATACTCAACAAAAAC+TGG | + | chr5_1:48741878-48741897 | None:intergenic | 30.0% | |
| TAAAGAAAAACCAGAGGAAA+GGG | - | chr5_1:48741901-48741920 | Msa0734560:CDS | 30.0% | |
| ! | AGCTGGAATATATTTGAAGT+TGG | - | chr5_1:48741934-48741953 | Msa0734560:CDS | 30.0% |
| ! | AAATGCTCTGGTTTATGTAA+TGG | + | chr5_1:48742013-48742032 | None:intergenic | 30.0% |
| AGAACATCTTATGAAGTGAT+GGG | - | chr5_1:48742115-48742134 | Msa0734560:CDS | 30.0% | |
| ! | GAATCTTCCTTTTCGATTTT+CGG | - | chr5_1:48742159-48742178 | Msa0734560:CDS | 30.0% |
| TTTAAGTCCGAAAATCGAAA+AGG | + | chr5_1:48742169-48742188 | None:intergenic | 30.0% | |
| TGGATATCATAGTAAAAACC+TGG | + | chr5_1:48742283-48742302 | None:intergenic | 30.0% | |
| CAACAAGATTATGCTCTATT+TGG | - | chr5_1:48742355-48742374 | Msa0734560:CDS | 30.0% | |
| GCCGATATTTATTGTTTGTT+CGG | + | chr5_1:48742408-48742427 | None:intergenic | 30.0% | |
| AACAATAAATATCGGCCATT+AGG | - | chr5_1:48742412-48742431 | Msa0734560:CDS | 30.0% | |
| !! | ATGTTCTGGTTTAGAATTGA+AGG | - | chr5_1:48742491-48742510 | Msa0734560:CDS | 30.0% |
| CTGGTATATGTGTGTTAATT+TGG | - | chr5_1:48742516-48742535 | Msa0734560:CDS | 30.0% | |
| AAACACATATGATCTTTCCA+TGG | + | chr5_1:48742650-48742669 | None:intergenic | 30.0% | |
| TTTCTATTTACACAGCACAA+TGG | - | chr5_1:48742799-48742818 | Msa0734560:CDS | 30.0% | |
| ATGATTGTCAAAACCAAGAA+AGG | + | chr5_1:48742879-48742898 | None:intergenic | 30.0% | |
| ! | TATGGTTTGAGGTTTCTTAT+TGG | + | chr5_1:48742993-48743012 | None:intergenic | 30.0% |
| ! | TCAATTCCGAATGTTTTTCA+AGG | - | chr5_1:48743043-48743062 | Msa0734560:CDS | 30.0% |
| !!! | GTTTTTCAAGGTGTTTTTCA+TGG | - | chr5_1:48743055-48743074 | Msa0734560:CDS | 30.0% |
| GAGAATGCAAAGAAAAATCT+CGG | - | chr5_1:48743100-48743119 | Msa0734560:CDS | 30.0% | |
| AATCAGATTTCGACTACAAT+TGG | - | chr5_1:48743185-48743204 | Msa0734560:intron | 30.0% | |
| ATCAGATTTCGACTACAATT+GGG | - | chr5_1:48743186-48743205 | Msa0734560:intron | 30.0% | |
| !!! | GATGAAAAACTGTTTTGATG+GGG | - | chr5_1:48743216-48743235 | Msa0734560:intron | 30.0% |
| !!! | ATGAAAAACTGTTTTGATGG+GGG | - | chr5_1:48743217-48743236 | Msa0734560:intron | 30.0% |
| TAAAGAATCGAACAAGTGAA+TGG | + | chr5_1:48743396-48743415 | None:intergenic | 30.0% | |
| TGGTGTATACTTGTTTACTA+CGG | + | chr5_1:48743530-48743549 | None:intergenic | 30.0% | |
| CTCCTCATAATAGTATTTGA+AGG | + | chr5_1:48743590-48743609 | None:intergenic | 30.0% | |
| CTTCAAATACTATTATGAGG+AGG | - | chr5_1:48743588-48743607 | Msa0734560:intron | 30.0% | |
| ! | CAAAGTTTTCACAATTGAGA+AGG | - | chr5_1:48743645-48743664 | Msa0734560:CDS | 30.0% |
| ATTATGATCTTCAAACCTTG+GGG | + | chr5_1:48743758-48743777 | None:intergenic | 30.0% | |
| GATTATGATCTTCAAACCTT+GGG | + | chr5_1:48743759-48743778 | None:intergenic | 30.0% | |
| !! | ATCATAATCGACTTGATGAA+AGG | - | chr5_1:48743770-48743789 | Msa0734560:CDS | 30.0% |
| !! | TCATAATCGACTTGATGAAA+GGG | - | chr5_1:48743771-48743790 | Msa0734560:CDS | 30.0% |
| !! | TCGACATGTTTTCAAGATTT+TGG | - | chr5_1:48743867-48743886 | Msa0734560:CDS | 30.0% |
| !! | ACATGTTTTCAAGATTTTGG+AGG | - | chr5_1:48743870-48743889 | Msa0734560:CDS | 30.0% |
| !!! | CTGCACAATATGTTTTAAAG+CGG | - | chr5_1:48743935-48743954 | Msa0734560:CDS | 30.0% |
| ! | GCATCTGAAATATTTCTCAA+CGG | - | chr5_1:48744102-48744121 | Msa0734560:CDS | 30.0% |
| !! | GAGGAGTTTCTTATTTCTAA+AGG | - | chr5_1:48744150-48744169 | Msa0734560:CDS | 30.0% |
| ! | TTTGGTCTTTCTTTGAACTT+TGG | + | chr5_1:48744258-48744277 | None:intergenic | 30.0% |
| AAGAAAGACCAAATCCAATT+AGG | - | chr5_1:48744265-48744284 | Msa0734560:CDS | 30.0% | |
| TTCTTTGACCTAATTGGATT+TGG | + | chr5_1:48744276-48744295 | None:intergenic | 30.0% | |
| AACAGAAATTCCTTATAGCT+CGG | - | chr5_1:48744331-48744350 | Msa0734560:intron | 30.0% | |
| !! | GAGGTTTTAACAAATTAAGC+GGG | - | chr5_1:48744375-48744394 | Msa0734560:intron | 30.0% |
| CGTTATGCTTGTAACAAAGA+AGG | - | chr5_1:48741800-48741819 | Msa0734560:CDS | 35.0% | |
| GTCTGCTTAATCCTAAAAAC+AGG | - | chr5_1:48741837-48741856 | Msa0734560:CDS | 35.0% | |
| GAAAGCTAAAGAAAAACCAG+AGG | - | chr5_1:48741895-48741914 | Msa0734560:CDS | 35.0% | |
| CTAAAGAAAAACCAGAGGAA+AGG | - | chr5_1:48741900-48741919 | Msa0734560:CDS | 35.0% | |
| CGAGAAGTAAATGAAGTTCA+AGG | - | chr5_1:48742052-48742071 | Msa0734560:CDS | 35.0% | |
| GAGAACATCTTATGAAGTGA+TGG | - | chr5_1:48742114-48742133 | Msa0734560:CDS | 35.0% | |
| ! | TGGTTTAGAATTGAAGGTTC+TGG | - | chr5_1:48742497-48742516 | Msa0734560:CDS | 35.0% |
| !! | CACAAATTCTAAGGCAAGAT+AGG | + | chr5_1:48742617-48742636 | None:intergenic | 35.0% |
| TGTACAGTGCACAAATTCTA+AGG | + | chr5_1:48742626-48742645 | None:intergenic | 35.0% | |
| ! | CATCGTAAGAGTGTGTTATT+TGG | - | chr5_1:48742896-48742915 | Msa0734560:CDS | 35.0% |
| !!! | AGACATCAGCTACTTTTGAT+TGG | - | chr5_1:48742939-48742958 | Msa0734560:CDS | 35.0% |
| ! | TTTTTCATGGTCTTTGCTCA+TGG | - | chr5_1:48743068-48743087 | Msa0734560:CDS | 35.0% |
| !!! | TGAAAAACTGTTTTGATGGG+GGG | - | chr5_1:48743218-48743237 | Msa0734560:intron | 35.0% |
| !! | TATGCATTGGTCTTCAGTTT+GGG | - | chr5_1:48743285-48743304 | Msa0734560:intron | 35.0% |
| ! | TCTTTCAATGCTTTTCTTCG+TGG | - | chr5_1:48743355-48743374 | Msa0734560:intron | 35.0% |
| ACATTATGGTTCAGAGAATG+AGG | - | chr5_1:48743425-48743444 | Msa0734560:intron | 35.0% | |
| CATTATGGTTCAGAGAATGA+GGG | - | chr5_1:48743426-48743445 | Msa0734560:intron | 35.0% | |
| !! | TCATGCTGATTTGGATTTCA+AGG | - | chr5_1:48743453-48743472 | Msa0734560:intron | 35.0% |
| ! | GGTTTCGAATGTTGATGTTT+TGG | - | chr5_1:48743708-48743727 | Msa0734560:CDS | 35.0% |
| CGATTATGATCTTCAAACCT+TGG | + | chr5_1:48743760-48743779 | None:intergenic | 35.0% | |
| !! | TTCAAGATTTTGGAGGTCTT+AGG | - | chr5_1:48743877-48743896 | Msa0734560:CDS | 35.0% |
| !! | CGCTTTAAAACATATTGTGC+AGG | + | chr5_1:48743937-48743956 | None:intergenic | 35.0% |
| !!! | CACAATATGTTTTAAAGCGG+TGG | - | chr5_1:48743938-48743957 | Msa0734560:CDS | 35.0% |
| !! | ACTGCTTTTGAAGACTTAGA+AGG | + | chr5_1:48744204-48744223 | None:intergenic | 35.0% |
| GAAGCAAAAGAAAGATGATG+AGG | - | chr5_1:48744356-48744375 | Msa0734560:intron | 35.0% | |
| ATAAATGTCTCTTGGGCCTT+AGG | + | chr5_1:48741567-48741586 | None:intergenic | 40.0% | |
| AGAACAATCTGAGAACGTTC+TGG | + | chr5_1:48741668-48741687 | None:intergenic | 40.0% | |
| !! | TCACATGTTGGCCTGTTTTT+AGG | + | chr5_1:48741851-48741870 | None:intergenic | 40.0% |
| AAAACTGGACTGTCACATGT+TGG | + | chr5_1:48741863-48741882 | None:intergenic | 40.0% | |
| !! | TCTTATGAAGTGATGGGTCA+AGG | - | chr5_1:48742121-48742140 | Msa0734560:CDS | 40.0% |
| TCTAATGACGACTCGTCAAA+AGG | - | chr5_1:48742195-48742214 | Msa0734560:CDS | 40.0% | |
| !!! | GCTAGTATTTTTTGGGCAGA+TGG | - | chr5_1:48742325-48742344 | Msa0734560:CDS | 40.0% |
| TCCAGCTATGCAAAGATCAT+AGG | - | chr5_1:48742745-48742764 | Msa0734560:CDS | 40.0% | |
| ACCTATGATCTTTGCATAGC+TGG | + | chr5_1:48742749-48742768 | None:intergenic | 40.0% | |
| TTCATTTCAGCTGCCTTTCT+TGG | - | chr5_1:48742863-48742882 | Msa0734560:CDS | 40.0% | |
| TGGTCTGTGTATATGGTTTG+AGG | + | chr5_1:48743004-48743023 | None:intergenic | 40.0% | |
| TCAAACCATATACACAGACC+AGG | - | chr5_1:48743003-48743022 | Msa0734560:CDS | 40.0% | |
| ! | AGCCACTTAAAGTCTGAAGT+AGG | + | chr5_1:48743244-48743263 | None:intergenic | 40.0% |
| CTCACTCAAATCGTATGCAT+TGG | - | chr5_1:48743272-48743291 | Msa0734560:intron | 40.0% | |
| !! | GTATGCATTGGTCTTCAGTT+TGG | - | chr5_1:48743284-48743303 | Msa0734560:intron | 40.0% |
| AATCGAACAAGTGAATGGTC+TGG | + | chr5_1:48743391-48743410 | None:intergenic | 40.0% | |
| ! | GAGGGATAATCATGCTGATT+TGG | - | chr5_1:48743444-48743463 | Msa0734560:intron | 40.0% |
| TATGAGGAGGACACAACAAA+AGG | - | chr5_1:48743601-48743620 | Msa0734560:intron | 40.0% | |
| ATGAGGAGGACACAACAAAA+GGG | - | chr5_1:48743602-48743621 | Msa0734560:intron | 40.0% | |
| !! | GTTTTGGATGCAGAACTTGA+AGG | - | chr5_1:48743724-48743743 | Msa0734560:CDS | 40.0% |
| CATGTCGTATGTTTGAGAAC+CGG | - | chr5_1:48743833-48743852 | Msa0734560:CDS | 40.0% | |
| ATGTCGTATGTTTGAGAACC+GGG | - | chr5_1:48743834-48743853 | Msa0734560:CDS | 40.0% | |
| !! | AAGATTTTGGAGGTCTTAGG+TGG | - | chr5_1:48743880-48743899 | Msa0734560:CDS | 40.0% |
| GATTTCAGCTTATCGACAGA+CGG | + | chr5_1:48743979-48743998 | None:intergenic | 40.0% | |
| CTGAAATCCACCATGAATGT+TGG | - | chr5_1:48743991-48744010 | Msa0734560:CDS | 40.0% | |
| TTTAGTGCCAACATTCATGG+TGG | + | chr5_1:48744001-48744020 | None:intergenic | 40.0% | |
| GTCTTTAGTGCCAACATTCA+TGG | + | chr5_1:48744004-48744023 | None:intergenic | 40.0% | |
| ATTTCTCAACGGTGTTCTTG+AGG | - | chr5_1:48744113-48744132 | Msa0734560:CDS | 40.0% | |
| ! | TGAAGACTTAGAAGGCGTAA+CGG | + | chr5_1:48744196-48744215 | None:intergenic | 40.0% |
| AGTCGCTTCTTTGACCTAAT+TGG | + | chr5_1:48744282-48744301 | None:intergenic | 40.0% | |
| TTTGCTTCTTCCGAGCTATA+AGG | + | chr5_1:48744344-48744363 | None:intergenic | 40.0% | |
| ATGGGCTTCTTGGATCCAAA+TGG | - | chr5_1:48741528-48741547 | Msa0734560:three_prime_UTR | 45.0% | |
| TGGGCTTCTTGGATCCAAAT+GGG | - | chr5_1:48741529-48741548 | Msa0734560:three_prime_UTR | 45.0% | |
| TCTCTTGGGCCTTAGGAAAA+GGG | + | chr5_1:48741560-48741579 | None:intergenic | 45.0% | |
| GAAAAACCAGAGGAAAGGGT+TGG | - | chr5_1:48741905-48741924 | Msa0734560:CDS | 45.0% | |
| TTACAACCAACCCTTTCCTC+TGG | + | chr5_1:48741914-48741933 | None:intergenic | 45.0% | |
| !! | GAAAGGGTTGGTTGTAAAGC+TGG | - | chr5_1:48741917-48741936 | Msa0734560:CDS | 45.0% |
| AATGAAGCTCTCTCGAAACC+AGG | - | chr5_1:48742262-48742281 | Msa0734560:CDS | 45.0% | |
| TGTCTTCTGCAGCATCAACT+TGG | + | chr5_1:48742303-48742322 | None:intergenic | 45.0% | |
| ATTTGTGCACTGTACAGCCA+TGG | - | chr5_1:48742630-48742649 | Msa0734560:CDS | 45.0% | |
| GGCCTACTTCAGACTTTAAG+TGG | - | chr5_1:48743239-48743258 | Msa0734560:intron | 45.0% | |
| !! | ATTGGTCTTCAGTTTGGGTG+AGG | - | chr5_1:48743290-48743309 | Msa0734560:intron | 45.0% |
| ! | GTGAGGTCACATTTTACAGC+TGG | - | chr5_1:48743307-48743326 | Msa0734560:intron | 45.0% |
| ATCCCAACAGTCAGCTTATG+CGG | - | chr5_1:48743503-48743522 | Msa0734560:intron | 45.0% | |
| TTGAAGGAAACCTTTCCCCA+AGG | - | chr5_1:48743740-48743759 | Msa0734560:CDS | 45.0% | |
| GATCTTCAAACCTTGGGGAA+AGG | + | chr5_1:48743753-48743772 | None:intergenic | 45.0% | |
| TGTCGTATGTTTGAGAACCG+GGG | - | chr5_1:48743835-48743854 | Msa0734560:CDS | 45.0% | |
| CATGTCGACATAAGAAACCC+CGG | + | chr5_1:48743855-48743874 | None:intergenic | 45.0% | |
| TTGATATCGTTGCGCTTCAG+TGG | + | chr5_1:48744028-48744047 | None:intergenic | 45.0% | |
| TGTTCTTGAGGCAGGGAAAA+AGG | - | chr5_1:48744125-48744144 | Msa0734560:CDS | 45.0% | |
| CTGTCTGTGAACCATCTGTT+GGG | - | chr5_1:48744226-48744245 | Msa0734560:CDS | 45.0% | |
| GGAAAAGGGTTCGACCCATT+TGG | + | chr5_1:48741546-48741565 | None:intergenic | 50.0% | |
| ! | TGGGTCGAACCCTTTTCCTA+AGG | - | chr5_1:48741548-48741567 | Msa0734560:three_prime_UTR | 50.0% |
| GTCTCTTGGGCCTTAGGAAA+AGG | + | chr5_1:48741561-48741580 | None:intergenic | 50.0% | |
| GTCTGCACAGCAAGAAAGCA+TGG | + | chr5_1:48741604-48741623 | None:intergenic | 50.0% | |
| CTCAAGTAGCGCAAATGCTC+TGG | + | chr5_1:48742025-48742044 | None:intergenic | 50.0% | |
| !! | GAAGTGATGGGTCAAGGAGT+TGG | - | chr5_1:48742127-48742146 | Msa0734560:CDS | 50.0% |
| GACGACTCGTCAAAAGGAGA+TGG | - | chr5_1:48742201-48742220 | Msa0734560:CDS | 50.0% | |
| GACTCGTCAAAAGGAGATGG+TGG | - | chr5_1:48742204-48742223 | Msa0734560:CDS | 50.0% | |
| ACCATATACACAGACCAGGC+TGG | - | chr5_1:48743007-48743026 | Msa0734560:CDS | 50.0% | |
| ACCAGCCTGGTCTGTGTATA+TGG | + | chr5_1:48743011-48743030 | None:intergenic | 50.0% | |
| TGGTCTTTGCTCATGGCACA+TGG | - | chr5_1:48743075-48743094 | Msa0734560:CDS | 50.0% | |
| GGTCTTTGCTCATGGCACAT+GGG | - | chr5_1:48743076-48743095 | Msa0734560:CDS | 50.0% | |
| GACCGCATAAGCTGACTGTT+GGG | + | chr5_1:48743508-48743527 | None:intergenic | 50.0% | |
| AGGGTTGTCACAGTCGACAT+TGG | - | chr5_1:48743790-48743809 | Msa0734560:CDS | 50.0% | |
| GGGTTGTCACAGTCGACATT+GGG | - | chr5_1:48743791-48743810 | Msa0734560:CDS | 50.0% | |
| TACACGTGTTTGCGCAGATG+CGG | - | chr5_1:48744077-48744096 | Msa0734560:CDS | 50.0% | |
| TCAACGGTGTTCTTGAGGCA+GGG | - | chr5_1:48744118-48744137 | Msa0734560:CDS | 50.0% | |
| GCTGTCTGTGAACCATCTGT+TGG | - | chr5_1:48744225-48744244 | Msa0734560:CDS | 50.0% | |
| ! | TTTGGTGCAGTCCCAACAGA+TGG | + | chr5_1:48744240-48744259 | None:intergenic | 50.0% |
| !! | GTGATGGGTCAAGGAGTTGG+AGG | - | chr5_1:48742130-48742149 | Msa0734560:CDS | 55.0% |
| ! | CGTCAAAAGGAGATGGTGGC+TGG | - | chr5_1:48742208-48742227 | Msa0734560:CDS | 55.0% |
| ACTTCAACAACGCACCAGCC+TGG | + | chr5_1:48743024-48743043 | None:intergenic | 55.0% | |
| GGACCGCATAAGCTGACTGT+TGG | + | chr5_1:48743509-48743528 | None:intergenic | 55.0% | |
| CTCAACGGTGTTCTTGAGGC+AGG | - | chr5_1:48744117-48744136 | Msa0734560:CDS | 55.0% | |
| TGAGGCAGGGAAAAAGGCAG+AGG | - | chr5_1:48744131-48744150 | Msa0734560:CDS | 55.0% | |
| GGGTCAAGGAGTTGGAGGCA+CGG | - | chr5_1:48742135-48742154 | Msa0734560:CDS | 60.0% | |
| ACGTGTTTGCGCAGATGCGG+AGG | - | chr5_1:48744080-48744099 | Msa0734560:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 48741528 | 48744544 | 48741528 | ID=Msa0734560;Name=Msa0734560 |
| chr5_1 | mRNA | 48741528 | 48744544 | 48741528 | ID=Msa0734560-mRNA-1;Parent=Msa0734560;Name=Msa0734560-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.5|0.33|0.66|1|1|3|152|777 |
| chr5_1 | exon | 48741528 | 48743199 | 48741528 | ID=Msa0734560-mRNA-1:exon:13913;Parent=Msa0734560-mRNA-1 |
| chr5_1 | exon | 48743639 | 48744297 | 48743639 | ID=Msa0734560-mRNA-1:exon:13912;Parent=Msa0734560-mRNA-1 |
| chr5_1 | exon | 48744390 | 48744544 | 48744390 | ID=Msa0734560-mRNA-1:exon:13911;Parent=Msa0734560-mRNA-1 |
| chr5_1 | CDS | 48744390 | 48744544 | 48744390 | ID=Msa0734560-mRNA-1:cds;Parent=Msa0734560-mRNA-1 |
| chr5_1 | CDS | 48743639 | 48744297 | 48743639 | ID=Msa0734560-mRNA-1:cds;Parent=Msa0734560-mRNA-1 |
| chr5_1 | CDS | 48741680 | 48743199 | 48741680 | ID=Msa0734560-mRNA-1:cds;Parent=Msa0734560-mRNA-1 |
| chr5_1 | three_prime_UTR | 48741528 | 48741679 | 48741528 | ID=Msa0734560-mRNA-1:three_prime_utr;Parent=Msa0734560-mRNA-1 |
| Gene Sequence |
| Protein sequence |
