Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735510 | XP_003616034.2 | 95.547 | 786 | 35 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1526 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735510 | sp|Q6Z3U3|Y7797_ORYSJ | 41.225 | 849 | 394 | 21 | 6 | 771 | 17 | 843 | 8.49e-180 | 543 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735510 | G7K0T7 | 95.547 | 786 | 35 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1526 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0735510 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735510 | MtrunA17_Chr5g0432721 | 95.547 | 786 | 35 | 0 | 1 | 786 | 1 | 786 | 0.0 | 1526 |
| Msa0735510 | MtrunA17_Chr3g0107701 | 55.833 | 840 | 301 | 14 | 1 | 778 | 1 | 832 | 0.0 | 848 |
| Msa0735510 | MtrunA17_Chr4g0012861 | 42.823 | 836 | 397 | 12 | 1 | 777 | 1 | 814 | 0.0 | 611 |
| Msa0735510 | MtrunA17_Chr2g0281191 | 41.058 | 548 | 223 | 12 | 283 | 774 | 314 | 817 | 3.35e-109 | 354 |
| Msa0735510 | MtrunA17_Chr2g0281191 | 43.066 | 137 | 60 | 5 | 6 | 135 | 31 | 156 | 2.82e-23 | 105 |
| Msa0735510 | MtrunA17_Chr7g0244871 | 58.065 | 93 | 39 | 0 | 314 | 406 | 5 | 97 | 2.38e-32 | 120 |
| Msa0735510 | MtrunA17_Chr7g0251891 | 48.235 | 85 | 43 | 1 | 321 | 404 | 16 | 100 | 1.82e-19 | 87.4 |
| Msa0735510 | MtrunA17_Chr7g0237841 | 39.216 | 102 | 60 | 2 | 321 | 420 | 623 | 724 | 1.45e-15 | 81.3 |
| Msa0735510 | MtrunA17_Chr1g0178071 | 37.037 | 135 | 64 | 6 | 302 | 422 | 54 | 181 | 4.97e-15 | 77.0 |
| Msa0735510 | MtrunA17_Chr5g0422501 | 41.818 | 110 | 47 | 4 | 321 | 417 | 235 | 340 | 5.40e-14 | 75.1 |
| Msa0735510 | MtrunA17_Chr7g0276471 | 38.462 | 91 | 51 | 3 | 321 | 408 | 117 | 205 | 1.63e-13 | 73.6 |
| Msa0735510 | MtrunA17_Chr7g0266821 | 41.176 | 102 | 50 | 5 | 326 | 421 | 65 | 162 | 4.63e-13 | 70.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735510 | AT4G32010.2 | 41.019 | 746 | 315 | 14 | 3 | 706 | 4 | 666 | 4.75e-175 | 523 |
| Msa0735510 | AT4G32010.1 | 40.800 | 750 | 315 | 15 | 3 | 706 | 4 | 670 | 2.78e-173 | 518 |
| Msa0735510 | AT2G30470.1 | 40.241 | 830 | 343 | 23 | 1 | 774 | 6 | 738 | 5.30e-172 | 515 |
| Msa0735510 | AT4G21550.2 | 33.554 | 453 | 259 | 10 | 3 | 437 | 14 | 442 | 5.87e-69 | 237 |
| Msa0735510 | AT4G21550.3 | 33.554 | 453 | 259 | 10 | 3 | 437 | 14 | 442 | 3.77e-68 | 235 |
| Msa0735510 | AT4G21550.1 | 33.554 | 453 | 259 | 10 | 3 | 437 | 14 | 442 | 6.95e-68 | 238 |
| Msa0735510 | AT4G21550.1 | 40.336 | 119 | 56 | 4 | 657 | 774 | 551 | 655 | 2.53e-12 | 70.9 |
| Msa0735510 | AT3G26790.1 | 45.882 | 85 | 45 | 1 | 321 | 404 | 91 | 175 | 6.21e-18 | 85.9 |
| Msa0735510 | AT3G24650.1 | 41.176 | 102 | 58 | 2 | 321 | 420 | 571 | 672 | 6.79e-16 | 82.4 |
| Msa0735510 | AT1G28300.1 | 41.000 | 100 | 57 | 2 | 321 | 419 | 170 | 268 | 1.69e-15 | 79.3 |
| Msa0735510 | AT5G06250.5 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 2.23e-15 | 77.4 |
| Msa0735510 | AT5G06250.4 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 2.53e-15 | 77.8 |
| Msa0735510 | AT5G06250.2 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 3.16e-15 | 77.4 |
| Msa0735510 | AT5G06250.3 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 3.23e-15 | 77.0 |
| Msa0735510 | AT4G01500.1 | 43.820 | 89 | 47 | 2 | 321 | 408 | 35 | 121 | 3.28e-15 | 78.2 |
| Msa0735510 | AT2G36080.4 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 3.39e-15 | 74.7 |
| Msa0735510 | AT2G36080.2 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 3.39e-15 | 74.7 |
| Msa0735510 | AT5G06250.1 | 35.135 | 148 | 73 | 6 | 310 | 439 | 37 | 179 | 4.86e-15 | 76.6 |
| Msa0735510 | AT2G36080.3 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 6.33e-15 | 75.5 |
| Msa0735510 | AT2G36080.1 | 39.815 | 108 | 56 | 4 | 321 | 421 | 37 | 142 | 6.68e-15 | 75.5 |
| Msa0735510 | AT2G46870.1 | 40.659 | 91 | 49 | 3 | 321 | 408 | 34 | 122 | 7.38e-15 | 76.6 |
| Msa0735510 | AT1G13260.1 | 42.391 | 92 | 47 | 3 | 321 | 408 | 187 | 276 | 8.46e-15 | 77.0 |
| Msa0735510 | AT3G25730.1 | 38.318 | 107 | 57 | 4 | 321 | 420 | 182 | 286 | 3.26e-14 | 75.1 |
| Msa0735510 | AT3G61970.1 | 38.298 | 94 | 50 | 3 | 321 | 408 | 22 | 113 | 7.78e-14 | 73.6 |
| Msa0735510 | AT1G68840.2 | 41.935 | 93 | 47 | 3 | 321 | 408 | 187 | 277 | 2.21e-13 | 72.8 |
| Msa0735510 | AT1G68840.1 | 41.935 | 93 | 47 | 3 | 321 | 408 | 187 | 277 | 2.21e-13 | 72.8 |
| Msa0735510 | AT1G01030.2 | 40.860 | 93 | 46 | 4 | 321 | 408 | 55 | 143 | 4.97e-13 | 71.6 |
| Msa0735510 | AT1G01030.1 | 40.860 | 93 | 46 | 4 | 321 | 408 | 55 | 143 | 5.98e-13 | 71.6 |
| Msa0735510 | AT3G11580.1 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 6.63e-13 | 70.1 |
| Msa0735510 | AT3G11580.4 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 5.24e-12 | 67.0 |
| Msa0735510 | AT3G11580.2 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 5.24e-12 | 67.0 |
| Msa0735510 | AT3G11580.5 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 5.24e-12 | 67.0 |
| Msa0735510 | AT3G11580.3 | 36.752 | 117 | 55 | 5 | 321 | 421 | 28 | 141 | 1.14e-11 | 67.8 |
Find 205 sgRNAs with CRISPR-Local
Find 395 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCAATTGTTACAATATT+TGG | 0.086549 | 5_1:+50851871 | None:intergenic |
| ATTCAAGAACACAAGCTTTC+AGG | 0.213336 | 5_1:-50850941 | Msa0735510:CDS |
| CACTTAACTTCTTCGGTCTT+TGG | 0.232028 | 5_1:+50853719 | None:intergenic |
| ACTTAACACCTTCTCAAATA+AGG | 0.237548 | 5_1:+50852879 | None:intergenic |
| CCCGCATTTGTTGCAGAGTT+TGG | 0.256841 | 5_1:+50855439 | None:intergenic |
| AATGCAGTAAATGCTGTTAA+AGG | 0.256935 | 5_1:+50853644 | None:intergenic |
| TATGATTAATTTGATTGTTT+TGG | 0.258238 | 5_1:+50850660 | None:intergenic |
| TATACCTCAGCACATGCTTT+TGG | 0.260046 | 5_1:+50852820 | None:intergenic |
| CAACTGCTTCAGATTCTAAT+TGG | 0.263143 | 5_1:+50850687 | None:intergenic |
| AATGGGGAACCTTACTTAAA+TGG | 0.267296 | 5_1:-50852132 | Msa0735510:CDS |
| TTCTAACGGCATTTCGATAA+AGG | 0.267420 | 5_1:-50852232 | Msa0735510:CDS |
| ATCAGTTACTTTCTCGATAC+TGG | 0.269074 | 5_1:-50853340 | Msa0735510:CDS |
| TTTACAGTTCCAAGATATAA+TGG | 0.271409 | 5_1:-50852653 | Msa0735510:CDS |
| TGAAGACTTTCTTGTTCCTT+TGG | 0.285526 | 5_1:+50851350 | None:intergenic |
| AAGAAGAGGTCTCGCAATAT+TGG | 0.296576 | 5_1:-50851997 | Msa0735510:CDS |
| TACATCCTACTGTTGTTATT+AGG | 0.308177 | 5_1:+50852598 | None:intergenic |
| TTTATTTGTTTCAAGATTCA+TGG | 0.313639 | 5_1:+50853415 | None:intergenic |
| TTCAATCAATGAAAGGTAAT+GGG | 0.318248 | 5_1:-50852149 | Msa0735510:CDS |
| ACGGATGAGGGAAGCCTAAA+TGG | 0.318513 | 5_1:-50850584 | Msa0735510:CDS |
| GTTAAGGAGAAATATAAAAT+TGG | 0.325578 | 5_1:+50850312 | None:intergenic |
| CAATTAAATGCTGGTGATAC+TGG | 0.325898 | 5_1:-50852538 | Msa0735510:intron |
| CATCATATTCTTCAAATACT+TGG | 0.347609 | 5_1:+50851848 | None:intergenic |
| CTAACTAAACTGTGCAGTTA+AGG | 0.347618 | 5_1:+50850296 | None:intergenic |
| TTACAGTTCCAAGATATAAT+GGG | 0.352438 | 5_1:-50852652 | Msa0735510:CDS |
| CCTCAGAATTTGAACTCATT+AGG | 0.359994 | 5_1:-50852189 | Msa0735510:CDS |
| AGGATACTGAAAATCATAAT+AGG | 0.362554 | 5_1:-50853919 | Msa0735510:CDS |
| CCTCAAGCTGACCTCCATTT+AGG | 0.367489 | 5_1:+50850570 | None:intergenic |
| GCAAACATCTCAGTCTATAT+TGG | 0.370039 | 5_1:-50853462 | Msa0735510:CDS |
| GATGGCATGGTTTCATGTAT+TGG | 0.373773 | 5_1:-50853743 | Msa0735510:CDS |
| AAATTCCACCGTCATGAAAC+TGG | 0.376289 | 5_1:-50854309 | Msa0735510:CDS |
| GCCTAGTGCTGCGGGACAAT+TGG | 0.377079 | 5_1:-50850540 | Msa0735510:CDS |
| TGAATCTTGAATCTTGAAAC+TGG | 0.380857 | 5_1:-50855728 | Msa0735510:five_prime_UTR |
| CTTGTTCCTTTGGACCGAGC+TGG | 0.382544 | 5_1:+50851360 | None:intergenic |
| TGAGGTGCACCAGAAAAGTT+TGG | 0.383323 | 5_1:+50852207 | None:intergenic |
| TAATATGACTAGTCATGCTT+TGG | 0.383891 | 5_1:+50850464 | None:intergenic |
| ATGAATCTTGAAACAAATAA+AGG | 0.390775 | 5_1:-50853413 | Msa0735510:CDS |
| AAAACCAGTGCCTCTCCATC+AGG | 0.394979 | 5_1:-50851706 | Msa0735510:CDS |
| ACATTCAGAACATCTGCGTT+TGG | 0.398523 | 5_1:-50852109 | Msa0735510:CDS |
| GAACATCTGCGTTTGGGTAA+TGG | 0.398608 | 5_1:-50852102 | Msa0735510:CDS |
| CAATGGTCCATTGCAGCAAC+TGG | 0.398704 | 5_1:-50852034 | Msa0735510:CDS |
| CAATTCTACACAACTGCATA+AGG | 0.399404 | 5_1:+50853807 | None:intergenic |
| CCGAGTGATGCAGGTCGAAT+TGG | 0.400991 | 5_1:-50852856 | Msa0735510:CDS |
| CATTCAGAACATCTGCGTTT+GGG | 0.404927 | 5_1:-50852108 | Msa0735510:CDS |
| AACAATGCAAGTGATCGATA+TGG | 0.408713 | 5_1:-50853878 | Msa0735510:CDS |
| AGTTTCCATTTCTTCATGAC+TGG | 0.412100 | 5_1:+50850502 | None:intergenic |
| TAACCCCTCCCAGCTTTGTC+TGG | 0.414478 | 5_1:-50854076 | Msa0735510:intron |
| CTTCAATCAATGAAAGGTAA+TGG | 0.414791 | 5_1:-50852150 | Msa0735510:CDS |
| TCATCCCAGTCATGAAGAAA+TGG | 0.415741 | 5_1:-50850507 | Msa0735510:CDS |
| AGAAGAGGTCTCGCAATATT+GGG | 0.416834 | 5_1:-50851996 | Msa0735510:CDS |
| CTGCCGTTGGCCACTGAGAT+TGG | 0.423759 | 5_1:-50853530 | Msa0735510:CDS |
| TCGTTCGAGTACCTTGATTT+CGG | 0.425356 | 5_1:-50854123 | Msa0735510:CDS |
| AGGCAAGGCAAGTGCATGTC+GGG | 0.425926 | 5_1:+50850762 | None:intergenic |
| ACTCGTTCCCCATTATATCT+TGG | 0.426035 | 5_1:+50852644 | None:intergenic |
| CTTAACACCTTCTCAAATAA+GGG | 0.428464 | 5_1:+50852880 | None:intergenic |
| GAATTGACACTTAACTTCTT+CGG | 0.430100 | 5_1:+50853712 | None:intergenic |
| TTCAAAAGGAATGGTAAAGA+TGG | 0.430406 | 5_1:-50850261 | Msa0735510:three_prime_UTR |
| TGGAAACTGATACATATAAC+AGG | 0.432852 | 5_1:-50850487 | Msa0735510:CDS |
| TCTGAATGTCCATTTAAGTA+AGG | 0.433067 | 5_1:+50852123 | None:intergenic |
| CTTATGCAGTTGTGTAGAAT+TGG | 0.437808 | 5_1:-50853806 | Msa0735510:CDS |
| GAGGCAGAATTGAAGAGATT+AGG | 0.439797 | 5_1:-50850345 | Msa0735510:three_prime_UTR |
| TATTGTAAGGAAGGTTCAAC+TGG | 0.440184 | 5_1:-50855503 | Msa0735510:CDS |
| CAACAGTAGGATGTATGTAT+TGG | 0.441536 | 5_1:-50852590 | Msa0735510:CDS |
| GGGTGGTCTTTGATCTCTGG+TGG | 0.449691 | 5_1:-50855467 | Msa0735510:CDS |
| ACATTTAGTCGGATAGATCC+TGG | 0.451349 | 5_1:-50852435 | Msa0735510:CDS |
| CCAGCTGACGACGACTCGTC+AGG | 0.453820 | 5_1:+50850869 | None:intergenic |
| CAAGAGCTGGAGAAATTGTC+GGG | 0.454716 | 5_1:-50853302 | Msa0735510:CDS |
| AAAGGGTGGTCTTTGATCTC+TGG | 0.456650 | 5_1:-50855470 | Msa0735510:CDS |
| ACAGAAAAGTGAATTCTCAT+AGG | 0.458212 | 5_1:+50854335 | None:intergenic |
| ATGAATAATTATTGTAAGGA+AGG | 0.465785 | 5_1:-50855512 | Msa0735510:CDS |
| AGTCATATTAAAACAACTGC+AGG | 0.477690 | 5_1:-50850451 | Msa0735510:three_prime_UTR |
| CCTGACGAGTCGTCGTCAGC+TGG | 0.478183 | 5_1:-50850869 | Msa0735510:CDS |
| AAGAAATTCTGTTCTGCCGT+TGG | 0.479555 | 5_1:-50853543 | Msa0735510:CDS |
| CCAAACTCTGCAACAAATGC+GGG | 0.482509 | 5_1:-50855439 | Msa0735510:intron |
| CATTCAACCACCAAGTGGAC+AGG | 0.483217 | 5_1:-50850795 | Msa0735510:CDS |
| TGGGTAATGGAACTGCTGAT+TGG | 0.484375 | 5_1:-50852089 | Msa0735510:CDS |
| CTATGGAATTGAGACTTACA+TGG | 0.489129 | 5_1:-50851936 | Msa0735510:CDS |
| ACAATATTTGGCTTGACACT+AGG | 0.490295 | 5_1:+50851883 | None:intergenic |
| GCATCGTAAGGCTCTTGAAC+CGG | 0.491358 | 5_1:+50850723 | None:intergenic |
| GCCAAATATTGTAACAATTG+AGG | 0.493508 | 5_1:-50851872 | Msa0735510:CDS |
| CCTTCACATCAGCAGGTGGC+CGG | 0.497637 | 5_1:+50853369 | None:intergenic |
| CATTCATAGCGAAGATGCTA+TGG | 0.498765 | 5_1:-50851953 | Msa0735510:CDS |
| GTGTATGAATAATTATTGTA+AGG | 0.498958 | 5_1:-50855516 | Msa0735510:CDS |
| ATTGCCTAAAACTGCTGCAT+TGG | 0.500146 | 5_1:+50850904 | None:intergenic |
| AACTTATACCACCGAAATCA+AGG | 0.500512 | 5_1:+50854112 | None:intergenic |
| CCGGCCACCTGCTGATGTGA+AGG | 0.500794 | 5_1:-50853369 | Msa0735510:CDS |
| GTGTTAAGTCCGAGTGATGC+AGG | 0.501935 | 5_1:-50852865 | Msa0735510:CDS |
| TCAGCAGGTGGCCGGCGTGG+TGG | 0.502029 | 5_1:+50853377 | None:intergenic |
| GTTTCCATTTCTTCATGACT+GGG | 0.503416 | 5_1:+50850503 | None:intergenic |
| GGTGGTCTTTGATCTCTGGT+GGG | 0.503585 | 5_1:-50855466 | Msa0735510:CDS |
| TCAAGAGCTGGAGAAATTGT+CGG | 0.505861 | 5_1:-50853303 | Msa0735510:CDS |
| CAGTAGGATGTATGTATTGG+AGG | 0.506980 | 5_1:-50852587 | Msa0735510:CDS |
| TTACCCTGATGGAGAGGCAC+TGG | 0.511162 | 5_1:+50851702 | None:intergenic |
| ATTATATCTTGGAACTGTAA+AGG | 0.513021 | 5_1:+50852655 | None:intergenic |
| TCAACTGGTGAATGGAAGAA+AGG | 0.514062 | 5_1:-50855488 | Msa0735510:CDS |
| CGGCCACCTGCTGATGTGAA+GGG | 0.515875 | 5_1:-50853368 | Msa0735510:CDS |
| TTAACCTTACCAGACAAAGC+TGG | 0.516700 | 5_1:+50854067 | None:intergenic |
| ATTGGAGAAGGTAAACTTGA+GGG | 0.521191 | 5_1:-50853512 | Msa0735510:CDS |
| AGCTCTTGATCAGTAATCCT+TGG | 0.521679 | 5_1:+50853317 | None:intergenic |
| CTGCATTGGCAAGAGCAACT+AGG | 0.522091 | 5_1:+50850918 | None:intergenic |
| GGTATATAATCTTACCCTGA+TGG | 0.522702 | 5_1:+50851691 | None:intergenic |
| AAACATCCGAGGCATCGTCC+TGG | 0.526966 | 5_1:-50850836 | Msa0735510:CDS |
| AGGAAGGTTCAACTGGTGAA+TGG | 0.526974 | 5_1:-50855496 | Msa0735510:CDS |
| CGATATGGTGAACATATTGA+TGG | 0.528805 | 5_1:-50853863 | Msa0735510:CDS |
| TACAAGTCACTCAACGGATG+AGG | 0.528930 | 5_1:-50850597 | Msa0735510:CDS |
| TTGTTACAGTAACATTTAGT+CGG | 0.530093 | 5_1:-50852446 | Msa0735510:intron |
| TGAAACGCTTTCACTAAAGA+TGG | 0.532158 | 5_1:-50853582 | Msa0735510:CDS |
| CCAATTCGACCTGCATCACT+CGG | 0.532323 | 5_1:+50852856 | None:intergenic |
| TTTCAGTTTCAGAGAAGAAG+AGG | 0.532408 | 5_1:-50852011 | Msa0735510:CDS |
| AATCTTCTTCAATCAATGAA+AGG | 0.533019 | 5_1:-50852156 | Msa0735510:CDS |
| ACTGAAACCAGTTGCTGCAA+TGG | 0.534324 | 5_1:+50852027 | None:intergenic |
| TTGGCTCAACTATCAAAGAC+TGG | 0.539999 | 5_1:-50853443 | Msa0735510:CDS |
| TGATTTCAACACTAACATTG+AGG | 0.542603 | 5_1:-50855628 | Msa0735510:five_prime_UTR |
| ATCACCAGCATTTAATTGCA+AGG | 0.546441 | 5_1:+50852543 | None:intergenic |
| ATTAATCATATAGATGAAGC+AGG | 0.546533 | 5_1:-50850647 | Msa0735510:CDS |
| CAGTCCTTGCAATTAAATGC+TGG | 0.547662 | 5_1:-50852547 | Msa0735510:CDS |
| AGACTACTGGTGGAACAAGC+TGG | 0.549005 | 5_1:-50853839 | Msa0735510:CDS |
| TAACCTTACCAGACAAAGCT+GGG | 0.549034 | 5_1:+50854068 | None:intergenic |
| GTGCATCCAGGACGATGCCT+CGG | 0.549949 | 5_1:+50850830 | None:intergenic |
| TACTTTCTCGATACTGGCCA+AGG | 0.550936 | 5_1:-50853334 | Msa0735510:CDS |
| GTTGTTGAGCCTAGTGCTGC+GGG | 0.553930 | 5_1:-50850548 | Msa0735510:CDS |
| GTCATATTAAAACAACTGCA+GGG | 0.556085 | 5_1:-50850450 | Msa0735510:three_prime_UTR |
| CCGGCGCTTAAGAGTCTCAC+AGG | 0.559293 | 5_1:+50850742 | None:intergenic |
| CTTACCAGACAAAGCTGGGA+GGG | 0.559652 | 5_1:+50854072 | None:intergenic |
| CAACTGGTGAATGGAAGAAA+GGG | 0.559758 | 5_1:-50855487 | Msa0735510:CDS |
| TGTAGTGCCCTTATTTGAGA+AGG | 0.560033 | 5_1:-50852887 | Msa0735510:CDS |
| ATTGACTTCTGTTGTTACAC+AGG | 0.561453 | 5_1:-50852382 | Msa0735510:intron |
| TCCAATTGTCCCGCAGCACT+AGG | 0.562994 | 5_1:+50850539 | None:intergenic |
| TCCATCCAGTTTCATGACGG+TGG | 0.564496 | 5_1:+50854304 | None:intergenic |
| AATTGCAAGGACTGTATGCA+AGG | 0.565036 | 5_1:+50852556 | None:intergenic |
| ACTATACATCCACTGTGGAT+AGG | 0.566036 | 5_1:+50854156 | None:intergenic |
| TGAAAATAATAGACCAACAT+GGG | 0.566824 | 5_1:-50853621 | Msa0735510:CDS |
| TTATTTCATTTAGGAACCCC+CGG | 0.568626 | 5_1:-50851743 | Msa0735510:intron |
| AAGGATTACTGATCAAGAGC+TGG | 0.569540 | 5_1:-50853315 | Msa0735510:CDS |
| GCCAAACTCTGCAACAAATG+CGG | 0.571705 | 5_1:-50855440 | Msa0735510:CDS |
| TTACCAGACAAAGCTGGGAG+GGG | 0.575319 | 5_1:+50854073 | None:intergenic |
| ATCAGACCAGCTCGGTCCAA+AGG | 0.576061 | 5_1:-50851366 | Msa0735510:CDS |
| TCCTCCATCCAGTTTCATGA+CGG | 0.576172 | 5_1:+50854301 | None:intergenic |
| CACACGATACAAGTGCATCC+AGG | 0.576195 | 5_1:+50850818 | None:intergenic |
| TTTGGCCTAATAACAACAGT+AGG | 0.577022 | 5_1:-50852603 | Msa0735510:CDS |
| TTCCCCTTCACATCAGCAGG+TGG | 0.578031 | 5_1:+50853365 | None:intergenic |
| TTCGAGTACCTTGATTTCGG+TGG | 0.580235 | 5_1:-50854120 | Msa0735510:CDS |
| TAAGTGTCAATTCAACAAAG+AGG | 0.581056 | 5_1:-50853702 | Msa0735510:CDS |
| ACATCAGCAGGTGGCCGGCG+TGG | 0.583280 | 5_1:+50853374 | None:intergenic |
| CCTGTGAGACTCTTAAGCGC+CGG | 0.585911 | 5_1:-50850742 | Msa0735510:CDS |
| CATTTAGTCGGATAGATCCT+GGG | 0.586278 | 5_1:-50852434 | Msa0735510:CDS |
| GCTTAAAACTGCACATAGTG+AGG | 0.592237 | 5_1:-50852067 | Msa0735510:CDS |
| CCTAATGAGTTCAAATTCTG+AGG | 0.592495 | 5_1:+50852189 | None:intergenic |
| CTTTCACTAAAGATGGCTCT+AGG | 0.593793 | 5_1:-50853575 | Msa0735510:CDS |
| GGTTGTTGAGCCTAGTGCTG+CGG | 0.595679 | 5_1:-50850549 | Msa0735510:CDS |
| ACAAGTCACTCAACGGATGA+GGG | 0.597566 | 5_1:-50850596 | Msa0735510:CDS |
| ATAGATGAAGCAGGTACTAG+TGG | 0.598221 | 5_1:-50850638 | Msa0735510:CDS |
| CTGGTGGAACAAGCTGGCAA+AGG | 0.598804 | 5_1:-50853833 | Msa0735510:CDS |
| TATTGATGGTAGACTACTGG+TGG | 0.600333 | 5_1:-50853849 | Msa0735510:CDS |
| GGCCACCTGCTGATGTGAAG+GGG | 0.601780 | 5_1:-50853367 | Msa0735510:CDS |
| CAGGCAAGGCAAGTGCATGT+CGG | 0.603970 | 5_1:+50850761 | None:intergenic |
| ACATATTGATGGTAGACTAC+TGG | 0.604398 | 5_1:-50853852 | Msa0735510:CDS |
| TCCACCGTCATGAAACTGGA+TGG | 0.604497 | 5_1:-50854305 | Msa0735510:CDS |
| ATTGCAAGGACTGTATGCAA+GGG | 0.607548 | 5_1:+50852557 | None:intergenic |
| ATATTGGGACGAAAACTAAG+AGG | 0.609627 | 5_1:-50851981 | Msa0735510:CDS |
| AAGATATAATGGGGAACGAG+TGG | 0.614024 | 5_1:-50852642 | Msa0735510:CDS |
| AGTAGGATGTATGTATTGGA+GGG | 0.615364 | 5_1:-50852586 | Msa0735510:CDS |
| GCTTAAGAGTCTCACAGGCA+AGG | 0.617723 | 5_1:+50850747 | None:intergenic |
| CCTAAATGGAGGTCAGCTTG+AGG | 0.620594 | 5_1:-50850570 | Msa0735510:CDS |
| TTGTGTAGAATTGGTGAAGT+CGG | 0.620883 | 5_1:-50853797 | Msa0735510:CDS |
| TACAGTTCCAAGATATAATG+GGG | 0.621280 | 5_1:-50852651 | Msa0735510:CDS |
| TTGGCCACTGAGATTGGAGA+AGG | 0.621905 | 5_1:-50853524 | Msa0735510:CDS |
| AAACCAGTGCCTCTCCATCA+GGG | 0.622368 | 5_1:-50851705 | Msa0735510:intron |
| TCTACATCTTCTCATTCTAA+CGG | 0.622522 | 5_1:-50852246 | Msa0735510:CDS |
| TCAATCAATGAAAGGTAATG+GGG | 0.623646 | 5_1:-50852148 | Msa0735510:CDS |
| ACAAGATACAAGTCACTCAA+CGG | 0.624174 | 5_1:-50850603 | Msa0735510:CDS |
| CAGCTGACGACGACTCGTCA+GGG | 0.628337 | 5_1:+50850870 | None:intergenic |
| ATAATCTTACCCTGATGGAG+AGG | 0.631070 | 5_1:+50851696 | None:intergenic |
| TGATTTCTCATCCACCACGC+CGG | 0.633848 | 5_1:-50853388 | Msa0735510:CDS |
| TCATATTAAAACAACTGCAG+GGG | 0.638836 | 5_1:-50850449 | Msa0735510:three_prime_UTR |
| GATGAAGCAGGTACTAGTGG+TGG | 0.639251 | 5_1:-50850635 | Msa0735510:CDS |
| ATTCAACCACCAAGTGGACA+GGG | 0.641900 | 5_1:-50850794 | Msa0735510:CDS |
| AAGTCGGTGAATCAAGCCGT+TGG | 0.642223 | 5_1:-50853781 | Msa0735510:CDS |
| GGTTCTGCATCAGACCAGCT+CGG | 0.642711 | 5_1:-50851374 | Msa0735510:CDS |
| TTGAAAATAATAGACCAACA+TGG | 0.643513 | 5_1:-50853622 | Msa0735510:CDS |
| CTGGTGAATGGAAGAAAGGG+TGG | 0.646177 | 5_1:-50855484 | Msa0735510:CDS |
| TTTGGCTTGACACTAGGCGG+CGG | 0.654279 | 5_1:+50851889 | None:intergenic |
| GAATTGAAGAGATTAGGTAG+TGG | 0.654585 | 5_1:-50850339 | Msa0735510:three_prime_UTR |
| GTGTGCATTCAACCACCAAG+TGG | 0.657426 | 5_1:-50850800 | Msa0735510:CDS |
| TCTCCAATCTCAGTGGCCAA+CGG | 0.657815 | 5_1:+50853527 | None:intergenic |
| CCTTCTGATTGCAAAATACG+AGG | 0.659510 | 5_1:+50852682 | None:intergenic |
| TTGCAAGGACTGTATGCAAG+GGG | 0.665717 | 5_1:+50852558 | None:intergenic |
| ATATTTGGCTTGACACTAGG+CGG | 0.666538 | 5_1:+50851886 | None:intergenic |
| GTTAGAATGAGAAGATGTAG+AGG | 0.666828 | 5_1:+50852248 | None:intergenic |
| TAAAACTGCACATAGTGAGG+AGG | 0.667263 | 5_1:-50852064 | Msa0735510:CDS |
| GAAATGCAGCAATTGCAGCA+AGG | 0.667427 | 5_1:-50854280 | Msa0735510:intron |
| GATTGGAGAAGGTAAACTTG+AGG | 0.667659 | 5_1:-50853513 | Msa0735510:CDS |
| AAGAGCTGGAGAAATTGTCG+GGG | 0.668493 | 5_1:-50853301 | Msa0735510:CDS |
| TTAATCTTTCCGAAAACCGG+GGG | 0.672825 | 5_1:+50851727 | None:intergenic |
| ACCGTCATGAAACTGGATGG+AGG | 0.674066 | 5_1:-50854302 | Msa0735510:CDS |
| TTTAATCTTTCCGAAAACCG+GGG | 0.679300 | 5_1:+50851726 | None:intergenic |
| AGTGAGGAGGAAATGAACAA+TGG | 0.681817 | 5_1:-50852051 | Msa0735510:CDS |
| TATGGAATTGAGACTTACAT+GGG | 0.685466 | 5_1:-50851935 | Msa0735510:CDS |
| AAGCTGGGAGGGGTTAACAC+AGG | 0.694875 | 5_1:+50854083 | None:intergenic |
| GAATCACCACAAAACATCCG+AGG | 0.699635 | 5_1:-50850847 | Msa0735510:CDS |
| TTTACCTTCTCCAATCTCAG+TGG | 0.700030 | 5_1:+50853520 | None:intergenic |
| GATGAGGGAAGCCTAAATGG+AGG | 0.710836 | 5_1:-50850581 | Msa0735510:CDS |
| CCTTACCAGACAAAGCTGGG+AGG | 0.719494 | 5_1:+50854071 | None:intergenic |
| AGAGCTGGAGAAATTGTCGG+GGG | 0.721199 | 5_1:-50853300 | Msa0735510:CDS |
| TTGATACTATACATCCACTG+TGG | 0.738079 | 5_1:+50854151 | None:intergenic |
| GCTCCCAAAAGCATGTGCTG+AGG | 0.776852 | 5_1:-50852824 | Msa0735510:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATATTTCAATATCAA+AGG | + | chr5_1:50851798-50851817 | None:intergenic | 10.0% |
| !!! | GTTTTTTATTTATTTCATTT+AGG | - | chr5_1:50854241-50854260 | Msa0735510:intron | 10.0% |
| !!! | TACATATATCTAAATATTTT+TGG | - | chr5_1:50854814-50854833 | Msa0735510:intron | 10.0% |
| !!! | ACATATATCTAAATATTTTT+GGG | - | chr5_1:50854815-50854834 | Msa0735510:intron | 10.0% |
| !!! | ATTTCACAATGTTATAATTT+TGG | - | chr5_1:50850638-50850657 | Msa0735510:CDS | 15.0% |
| !!! | TTTCACAATGTTATAATTTT+GGG | - | chr5_1:50850639-50850658 | Msa0735510:CDS | 15.0% |
| !!! | TTGATTCAAATTGATAATTT+TGG | - | chr5_1:50850685-50850704 | Msa0735510:CDS | 15.0% |
| !!! | TGATTCAAATTGATAATTTT+GGG | - | chr5_1:50850686-50850705 | Msa0735510:CDS | 15.0% |
| !! | TCTTAAATATAAGTAAAAGT+TGG | + | chr5_1:50850966-50850985 | None:intergenic | 15.0% |
| !!! | ACTTTTACTTATATTTAAGA+CGG | - | chr5_1:50851035-50851054 | Msa0735510:intron | 15.0% |
| !!! | CAATTATTTTTTAGAAAACT+CGG | + | chr5_1:50851356-50851375 | None:intergenic | 15.0% |
| !! | AGAATCAAATAACAAAATTT+CGG | + | chr5_1:50851986-50852005 | None:intergenic | 15.0% |
| !!! | TATGATTAATTTGATTGTTT+TGG | + | chr5_1:50855336-50855355 | None:intergenic | 15.0% |
| !!! | TTTTACTTCATTTTTCATTT+TGG | - | chr5_1:50855626-50855645 | Msa0735510:five_prime_UTR | 15.0% |
| !!! | AGAGTGATTGATTTTATTTT+GGG | - | chr5_1:50850431-50850450 | Msa0735510:three_prime_UTR | 20.0% |
| !! | GTGTATGAATAATTATTGTA+AGG | - | chr5_1:50850477-50850496 | Msa0735510:CDS | 20.0% |
| !! | ATGAATAATTATTGTAAGGA+AGG | - | chr5_1:50850481-50850500 | Msa0735510:CDS | 20.0% |
| !!! | TTCACAATGTTATAATTTTG+GGG | - | chr5_1:50850640-50850659 | Msa0735510:CDS | 20.0% |
| !! | AATACAACTTTAAATATGAG+TGG | + | chr5_1:50850870-50850889 | None:intergenic | 20.0% |
| !! | AAATCAAAATATGAAATGCT+CGG | - | chr5_1:50850899-50850918 | Msa0735510:CDS | 20.0% |
| !!! | CTTTTACTTATATTTAAGAC+CGG | + | chr5_1:50851036-50851055 | None:intergenic | 20.0% |
| !!! | CTTTTACTTATATTTAAGAC+GGG | - | chr5_1:50851036-50851055 | Msa0735510:intron | 20.0% |
| !!! | CGAGTTTTCTAAAAAATAAT+TGG | - | chr5_1:50851354-50851373 | Msa0735510:CDS | 20.0% |
| !! | TTCAAATCAAACATATGTTT+AGG | - | chr5_1:50851523-50851542 | Msa0735510:intron | 20.0% |
| !! | GAATCAAATAACAAAATTTC+GGG | + | chr5_1:50851985-50852004 | None:intergenic | 20.0% |
| !!! | TATCATTGAATGTTTTTCTA+TGG | - | chr5_1:50852047-50852066 | Msa0735510:CDS | 20.0% |
| !! | TTTATTTGTTTCAAGATTCA+TGG | + | chr5_1:50852581-50852600 | None:intergenic | 20.0% |
| !! | ATGAATCTTGAAACAAATAA+AGG | - | chr5_1:50852580-50852599 | Msa0735510:CDS | 20.0% |
| !! | ATAATAGACCAAAATACTAA+GGG | + | chr5_1:50853012-50853031 | None:intergenic | 20.0% |
| !! | TATAATAGACCAAAATACTA+AGG | + | chr5_1:50853013-50853032 | None:intergenic | 20.0% |
| !!! | AATTTCTATTTGGTTTTAGA+AGG | - | chr5_1:50853586-50853605 | Msa0735510:CDS | 20.0% |
| !!! | AATGATATAGTTTGGATTTT+TGG | - | chr5_1:50854184-50854203 | Msa0735510:intron | 20.0% |
| !! | ATAAATAAAAAACATAAGCC+AGG | + | chr5_1:50854234-50854253 | None:intergenic | 20.0% |
| !!! | ATTATTCTTGTTATGTACTA+TGG | - | chr5_1:50854581-50854600 | Msa0735510:intron | 20.0% |
| !! | TAAATAAAAAAAACGATAGC+AGG | + | chr5_1:50854690-50854709 | None:intergenic | 20.0% |
| !! | TAATTAAGTACTAGTTATCA+AGG | + | chr5_1:50854954-50854973 | None:intergenic | 20.0% |
| !! | GTTAAGGAGAAATATAAAAT+TGG | + | chr5_1:50855684-50855703 | None:intergenic | 20.0% |
| !!! | TTTTTTTCTTTCTGTTGTAG+TGG | - | chr5_1:50850310-50850329 | Msa0735510:three_prime_UTR | 25.0% |
| !!! | TTTTTTCTTTCTGTTGTAGT+GGG | - | chr5_1:50850311-50850330 | Msa0735510:three_prime_UTR | 25.0% |
| !!! | TTTTTGGGTTTTGATTTCTA+GGG | - | chr5_1:50850388-50850407 | Msa0735510:three_prime_UTR | 25.0% |
| !!! | GAGAGTGATTGATTTTATTT+TGG | - | chr5_1:50850430-50850449 | Msa0735510:three_prime_UTR | 25.0% |
| !!! | TTATTTTGGGTTTTGTTCAA+TGG | - | chr5_1:50850444-50850463 | Msa0735510:three_prime_UTR | 25.0% |
| !!! | TATTTTGGGTTTTGTTCAAT+GGG | - | chr5_1:50850445-50850464 | Msa0735510:three_prime_UTR | 25.0% |
| !!! | ATTGATAATTTTGGGATTTG+AGG | - | chr5_1:50850694-50850713 | Msa0735510:CDS | 25.0% |
| !!! | TCAAAGAAAGTTGATGTATT+TGG | + | chr5_1:50851012-50851031 | None:intergenic | 25.0% |
| ! | ACATTAAGATAATCATTTGC+AGG | + | chr5_1:50851137-50851156 | None:intergenic | 25.0% |
| ! | GAATCTGTAAATTTATGTGT+CGG | + | chr5_1:50852023-50852042 | None:intergenic | 25.0% |
| ! | AGGATACTGAAAATCATAAT+AGG | - | chr5_1:50852074-50852093 | Msa0735510:CDS | 25.0% |
| ! | TTGAAAATAATAGACCAACA+TGG | - | chr5_1:50852371-50852390 | Msa0735510:intron | 25.0% |
| ! | TGAAAATAATAGACCAACAT+GGG | - | chr5_1:50852372-50852391 | Msa0735510:intron | 25.0% |
| ! | CAAACAGAACCTAAATATAA+AGG | + | chr5_1:50852724-50852743 | None:intergenic | 25.0% |
| !! | CTTTATATTTAGGTTCTGTT+TGG | - | chr5_1:50852722-50852741 | Msa0735510:intron | 25.0% |
| ! | AACTGAGATAATAATGCTAA+GGG | + | chr5_1:50853076-50853095 | None:intergenic | 25.0% |
| ! | AAACTGAGATAATAATGCTA+AGG | + | chr5_1:50853077-50853096 | None:intergenic | 25.0% |
| ! | CAAATTGGTATATGAATTTC+AGG | - | chr5_1:50853280-50853299 | Msa0735510:intron | 25.0% |
| ! | ATTATATCTTGGAACTGTAA+AGG | + | chr5_1:50853341-50853360 | None:intergenic | 25.0% |
| ! | TTTACAGTTCCAAGATATAA+TGG | - | chr5_1:50853340-50853359 | Msa0735510:CDS | 25.0% |
| ! | TTACAGTTCCAAGATATAAT+GGG | - | chr5_1:50853341-50853360 | Msa0735510:CDS | 25.0% |
| ! | TTGTTACAGTAACATTTAGT+CGG | - | chr5_1:50853547-50853566 | Msa0735510:CDS | 25.0% |
| ! | TTAAAGGGTTATCTTTAAAC+AGG | - | chr5_1:50853719-50853738 | Msa0735510:CDS | 25.0% |
| ! | AATCTTCTTCAATCAATGAA+AGG | - | chr5_1:50853837-50853856 | Msa0735510:CDS | 25.0% |
| ! | TTCAATCAATGAAAGGTAAT+GGG | - | chr5_1:50853844-50853863 | Msa0735510:CDS | 25.0% |
| ! | TCCTCAATTGTTACAATATT+TGG | + | chr5_1:50854125-50854144 | None:intergenic | 25.0% |
| ! | CATCATATTCTTCAAATACT+TGG | + | chr5_1:50854148-50854167 | None:intergenic | 25.0% |
| ! | AAACTGTGAATGATATAGTT+TGG | - | chr5_1:50854176-50854195 | Msa0735510:intron | 25.0% |
| ! | CTATCATTGTACATATTTGA+AGG | + | chr5_1:50854378-50854397 | None:intergenic | 25.0% |
| ! | TTAGTCCTATTTCAAATGTT+TGG | - | chr5_1:50854493-50854512 | Msa0735510:intron | 25.0% |
| ! | TAGTCCTATTTCAAATGTTT+GGG | - | chr5_1:50854494-50854513 | Msa0735510:intron | 25.0% |
| ! | ATTAATCATATAGATGAAGC+AGG | - | chr5_1:50855346-50855365 | Msa0735510:intron | 25.0% |
| !!! | TACTTCATTTTTCATTTTGG+AGG | - | chr5_1:50855629-50855648 | Msa0735510:five_prime_UTR | 25.0% |
| !! | AGTTTACTTTCCTTTTCAAA+AGG | - | chr5_1:50855718-50855737 | Msa0735510:five_prime_UTR | 25.0% |
| TGAATCTTGAATCTTGAAAC+TGG | - | chr5_1:50850265-50850284 | Msa0735510:three_prime_UTR | 30.0% | |
| TGATTTCAACACTAACATTG+AGG | - | chr5_1:50850365-50850384 | Msa0735510:three_prime_UTR | 30.0% | |
| ! | AACACTAACATTGAGGTTTT+TGG | - | chr5_1:50850372-50850391 | Msa0735510:three_prime_UTR | 30.0% |
| ! | ACACTAACATTGAGGTTTTT+GGG | - | chr5_1:50850373-50850392 | Msa0735510:three_prime_UTR | 30.0% |
| !!! | GTTTTTGGGTTTTGATTTCT+AGG | - | chr5_1:50850387-50850406 | Msa0735510:three_prime_UTR | 30.0% |
| !!! | ATTTTGGGTTTTGTTCAATG+GGG | - | chr5_1:50850446-50850465 | Msa0735510:three_prime_UTR | 30.0% |
| TGTTCTTATGAGTTCATGTT+GGG | - | chr5_1:50850727-50850746 | Msa0735510:CDS | 30.0% | |
| ! | TTTCAACCCTTTTTCTTTTC+TGG | - | chr5_1:50850768-50850787 | Msa0735510:CDS | 30.0% |
| ! | TTCAACCCTTTTTCTTTTCT+GGG | - | chr5_1:50850769-50850788 | Msa0735510:CDS | 30.0% |
| AAAACCCCAGAAAAGAAAAA+GGG | + | chr5_1:50850777-50850796 | None:intergenic | 30.0% | |
| ! | TGATCATCATTTTCATCCAA+AGG | + | chr5_1:50850845-50850864 | None:intergenic | 30.0% |
| AAATGTAGACTGAACAGAAA+GGG | + | chr5_1:50851088-50851107 | None:intergenic | 30.0% | |
| AAGTCCATGTTGCAATTTAT+AGG | - | chr5_1:50851478-50851497 | Msa0735510:intron | 30.0% | |
| AGTCCATGTTGCAATTTATA+GGG | - | chr5_1:50851479-50851498 | Msa0735510:intron | 30.0% | |
| TTACCCTATAAATTGCAACA+TGG | + | chr5_1:50851485-50851504 | None:intergenic | 30.0% | |
| AAATTAAGAATCCGTAAGCA+GGG | + | chr5_1:50851614-50851633 | None:intergenic | 30.0% | |
| TAAATTAAGAATCCGTAAGC+AGG | + | chr5_1:50851615-50851634 | None:intergenic | 30.0% | |
| ACAGAAAAGTGAATTCTCAT+AGG | + | chr5_1:50851661-50851680 | None:intergenic | 30.0% | |
| ! | GAATGTTTTTCTATGGATAC+AGG | - | chr5_1:50852054-50852073 | Msa0735510:CDS | 30.0% |
| GAATTGACACTTAACTTCTT+CGG | + | chr5_1:50852284-50852303 | None:intergenic | 30.0% | |
| TAAGTGTCAATTCAACAAAG+AGG | - | chr5_1:50852291-50852310 | Msa0735510:intron | 30.0% | |
| AATGCAGTAAATGCTGTTAA+AGG | + | chr5_1:50852352-50852371 | None:intergenic | 30.0% | |
| ! | ACATCTTCTCATTTTCAACA+AGG | - | chr5_1:50852508-50852527 | Msa0735510:intron | 30.0% |
| ! | CATCTTCTCATTTTCAACAA+GGG | - | chr5_1:50852509-50852528 | Msa0735510:intron | 30.0% |
| CTTATTTCGATAAGTTCTCT+AGG | + | chr5_1:50852881-50852900 | None:intergenic | 30.0% | |
| AATAAGCTGAAAACAACTCA+TGG | - | chr5_1:50852895-50852914 | Msa0735510:CDS | 30.0% | |
| AGTTTATCGAAACAGCTTAA+CGG | + | chr5_1:50852926-50852945 | None:intergenic | 30.0% | |
| GAATCAACTTTGCATGTTTA+AGG | + | chr5_1:50853042-50853061 | None:intergenic | 30.0% | |
| CTTAACACCTTCTCAAATAA+GGG | + | chr5_1:50853116-50853135 | None:intergenic | 30.0% | |
| ACTTAACACCTTCTCAAATA+AGG | + | chr5_1:50853117-50853136 | None:intergenic | 30.0% | |
| TACAGTTCCAAGATATAATG+GGG | - | chr5_1:50853342-50853361 | Msa0735510:CDS | 30.0% | |
| ! | TACATCCTACTGTTGTTATT+AGG | + | chr5_1:50853398-50853417 | None:intergenic | 30.0% |
| !!! | CCAAATAGAAATTTTTTCCC+AGG | + | chr5_1:50853579-50853598 | None:intergenic | 30.0% |
| CCTGGGAAAAAATTTCTATT+TGG | - | chr5_1:50853576-50853595 | Msa0735510:CDS | 30.0% | |
| TCTACATCTTCTCATTCTAA+CGG | - | chr5_1:50853747-50853766 | Msa0735510:CDS | 30.0% | |
| ! | ATAAAGGATCCAAACTTTTC+TGG | - | chr5_1:50853777-50853796 | Msa0735510:CDS | 30.0% |
| CTTCAATCAATGAAAGGTAA+TGG | - | chr5_1:50853843-50853862 | Msa0735510:CDS | 30.0% | |
| TCAATCAATGAAAGGTAATG+GGG | - | chr5_1:50853845-50853864 | Msa0735510:CDS | 30.0% | |
| TCTGAATGTCCATTTAAGTA+AGG | + | chr5_1:50853873-50853892 | None:intergenic | 30.0% | |
| TATGGAATTGAGACTTACAT+GGG | - | chr5_1:50854058-50854077 | Msa0735510:intron | 30.0% | |
| GCCAAATATTGTAACAATTG+AGG | - | chr5_1:50854121-50854140 | Msa0735510:CDS | 30.0% | |
| ATCTTCAAATTTCTGTTACC+TGG | - | chr5_1:50854213-50854232 | Msa0735510:intron | 30.0% | |
| ! | TTTTAATCTTTCCGAAAACC+GGG | + | chr5_1:50854271-50854290 | None:intergenic | 30.0% |
| !! | GTTTTAATCTTTCCGAAAAC+CGG | + | chr5_1:50854272-50854291 | None:intergenic | 30.0% |
| ! | GTTATGTACTATGGTTTTTC+AGG | - | chr5_1:50854590-50854609 | Msa0735510:intron | 30.0% |
| AGTCTTCAAAGAACCAAAAA+AGG | - | chr5_1:50854658-50854677 | Msa0735510:intron | 30.0% | |
| TCTGTAGTAGTCATGTTTAT+CGG | - | chr5_1:50854717-50854736 | Msa0735510:intron | 30.0% | |
| !!! | CTAAATATTTTTGGGATGTG+TGG | - | chr5_1:50854823-50854842 | Msa0735510:intron | 30.0% |
| !! | AGTGCTTTGGAAATAACTTT+AGG | + | chr5_1:50854923-50854942 | None:intergenic | 30.0% |
| TGGAAACTGATACATATAAC+AGG | - | chr5_1:50855506-50855525 | Msa0735510:CDS | 30.0% | |
| ! | TAATATGACTAGTCATGCTT+TGG | + | chr5_1:50855532-50855551 | None:intergenic | 30.0% |
| AGTCATATTAAAACAACTGC+AGG | - | chr5_1:50855542-50855561 | Msa0735510:exon | 30.0% | |
| GTCATATTAAAACAACTGCA+GGG | - | chr5_1:50855543-50855562 | Msa0735510:exon | 30.0% | |
| TCATATTAAAACAACTGCAG+GGG | - | chr5_1:50855544-50855563 | Msa0735510:exon | 30.0% | |
| ! | ACTTTCCTTTTCAAAAGGAA+TGG | - | chr5_1:50855723-50855742 | Msa0735510:five_prime_UTR | 30.0% |
| !! | CTTTACCATTCCTTTTGAAA+AGG | + | chr5_1:50855731-50855750 | None:intergenic | 30.0% |
| TTCAAAAGGAATGGTAAAGA+TGG | - | chr5_1:50855732-50855751 | Msa0735510:five_prime_UTR | 30.0% | |
| !!! | GATTTCTAGGGTTTTGACTT+TGG | - | chr5_1:50850400-50850419 | Msa0735510:three_prime_UTR | 35.0% |
| !!! | TTTTGGGTTTTGTTCAATGG+GGG | - | chr5_1:50850447-50850466 | Msa0735510:three_prime_UTR | 35.0% |
| TATTGTAAGGAAGGTTCAAC+TGG | - | chr5_1:50850490-50850509 | Msa0735510:CDS | 35.0% | |
| GTGTTCTTATGAGTTCATGT+TGG | - | chr5_1:50850726-50850745 | Msa0735510:CDS | 35.0% | |
| ! | TCAACCCTTTTTCTTTTCTG+GGG | - | chr5_1:50850770-50850789 | Msa0735510:CDS | 35.0% |
| GAAAACCCCAGAAAAGAAAA+AGG | + | chr5_1:50850778-50850797 | None:intergenic | 35.0% | |
| !!! | TTTTCTTTTCTGGGGTTTTC+AGG | - | chr5_1:50850778-50850797 | Msa0735510:CDS | 35.0% |
| !!! | TTTCTTTTCTGGGGTTTTCA+GGG | - | chr5_1:50850779-50850798 | Msa0735510:CDS | 35.0% |
| GGGTACATTACTTAAACTGA+TGG | + | chr5_1:50851068-50851087 | None:intergenic | 35.0% | |
| CAAATGTAGACTGAACAGAA+AGG | + | chr5_1:50851089-50851108 | None:intergenic | 35.0% | |
| AGTCTTGCTCTGACTTTAAA+TGG | - | chr5_1:50851269-50851288 | Msa0735510:intron | 35.0% | |
| GTCTTGCTCTGACTTTAAAT+GGG | - | chr5_1:50851270-50851289 | Msa0735510:intron | 35.0% | |
| !! | CTTGCTTTTGTTAGTAAGTC+AGG | - | chr5_1:50851443-50851462 | Msa0735510:intron | 35.0% |
| AATTAAGAATCCGTAAGCAG+GGG | + | chr5_1:50851613-50851632 | None:intergenic | 35.0% | |
| TATCAAAGGAGAGAAAGACA+AGG | + | chr5_1:50851784-50851803 | None:intergenic | 35.0% | |
| TTGATACTATACATCCACTG+TGG | + | chr5_1:50851845-50851864 | None:intergenic | 35.0% | |
| AACTTATACCACCGAAATCA+AGG | + | chr5_1:50851884-50851903 | None:intergenic | 35.0% | |
| ! | TTTATGTGTCGGTATCACAA+TGG | + | chr5_1:50852012-50852031 | None:intergenic | 35.0% |
| !!! | CATTGTTTTTGGTCGATTGA+GGG | + | chr5_1:50852102-50852121 | None:intergenic | 35.0% |
| ! | TCGATCACTTGCATTGTTTT+TGG | + | chr5_1:50852113-50852132 | None:intergenic | 35.0% |
| AACAATGCAAGTGATCGATA+TGG | - | chr5_1:50852115-50852134 | Msa0735510:CDS | 35.0% | |
| CGATATGGTGAACATATTGA+TGG | - | chr5_1:50852130-50852149 | Msa0735510:CDS | 35.0% | |
| ! | ACATATTGATGGTAGACTAC+TGG | - | chr5_1:50852141-50852160 | Msa0735510:CDS | 35.0% |
| CAATTCTACACAACTGCATA+AGG | + | chr5_1:50852189-50852208 | None:intergenic | 35.0% | |
| CTTATGCAGTTGTGTAGAAT+TGG | - | chr5_1:50852187-50852206 | Msa0735510:CDS | 35.0% | |
| TTGTGTAGAATTGGTGAAGT+CGG | - | chr5_1:50852196-50852215 | Msa0735510:CDS | 35.0% | |
| ! | ATACTTTTAGTCTCCCATGT+TGG | + | chr5_1:50852388-50852407 | None:intergenic | 35.0% |
| TGAAACGCTTTCACTAAAGA+TGG | - | chr5_1:50852411-50852430 | Msa0735510:CDS | 35.0% | |
| ATTGGAGAAGGTAAACTTGA+GGG | - | chr5_1:50852481-50852500 | Msa0735510:intron | 35.0% | |
| GCAAACATCTCAGTCTATAT+TGG | - | chr5_1:50852531-50852550 | Msa0735510:intron | 35.0% | |
| ! | ATCAGTTACTTTCTCGATAC+TGG | - | chr5_1:50852653-50852672 | Msa0735510:CDS | 35.0% |
| !! | GGGGAGTATCCTTTATATTT+AGG | - | chr5_1:50852712-50852731 | Msa0735510:intron | 35.0% |
| TACACATTTCCCTGTAATTG+CGG | - | chr5_1:50853248-50853267 | Msa0735510:intron | 35.0% | |
| ! | GGACTTTTCAGTTCAGATTT+TGG | - | chr5_1:50853372-50853391 | Msa0735510:CDS | 35.0% |
| TTTGGCCTAATAACAACAGT+AGG | - | chr5_1:50853390-50853409 | Msa0735510:CDS | 35.0% | |
| CAACAGTAGGATGTATGTAT+TGG | - | chr5_1:50853403-50853422 | Msa0735510:CDS | 35.0% | |
| AGTAGGATGTATGTATTGGA+GGG | - | chr5_1:50853407-50853426 | Msa0735510:CDS | 35.0% | |
| ATCACCAGCATTTAATTGCA+AGG | + | chr5_1:50853453-50853472 | None:intergenic | 35.0% | |
| CAATTAAATGCTGGTGATAC+TGG | - | chr5_1:50853455-50853474 | Msa0735510:CDS | 35.0% | |
| ! | ATTGACTTCTGTTGTTACAC+AGG | - | chr5_1:50853611-50853630 | Msa0735510:CDS | 35.0% |
| GTTAGAATGAGAAGATGTAG+AGG | + | chr5_1:50853748-50853767 | None:intergenic | 35.0% | |
| TTCTAACGGCATTTCGATAA+AGG | - | chr5_1:50853761-50853780 | Msa0735510:CDS | 35.0% | |
| CCTAATGAGTTCAAATTCTG+AGG | + | chr5_1:50853807-50853826 | None:intergenic | 35.0% | |
| CCTCAGAATTTGAACTCATT+AGG | - | chr5_1:50853804-50853823 | Msa0735510:CDS | 35.0% | |
| AATGGGGAACCTTACTTAAA+TGG | - | chr5_1:50853861-50853880 | Msa0735510:CDS | 35.0% | |
| TTTCAGTTTCAGAGAAGAAG+AGG | - | chr5_1:50853982-50854001 | Msa0735510:intron | 35.0% | |
| ATATTGGGACGAAAACTAAG+AGG | - | chr5_1:50854012-50854031 | Msa0735510:intron | 35.0% | |
| CTATGGAATTGAGACTTACA+TGG | - | chr5_1:50854057-50854076 | Msa0735510:intron | 35.0% | |
| !! | ACAATATTTGGCTTGACACT+AGG | + | chr5_1:50854113-50854132 | None:intergenic | 35.0% |
| TTATTTCATTTAGGAACCCC+CGG | - | chr5_1:50854250-50854269 | Msa0735510:intron | 35.0% | |
| TTTAATCTTTCCGAAAACCG+GGG | + | chr5_1:50854270-50854289 | None:intergenic | 35.0% | |
| GGTATATAATCTTACCCTGA+TGG | + | chr5_1:50854305-50854324 | None:intergenic | 35.0% | |
| ! | GCATCCCAAACATTTGAAAT+AGG | + | chr5_1:50854501-50854520 | None:intergenic | 35.0% |
| TGAAGACTTTCTTGTTCCTT+TGG | + | chr5_1:50854646-50854665 | None:intergenic | 35.0% | |
| !!! | TATTTTTGGGATGTGTGGAT+TGG | - | chr5_1:50854828-50854847 | Msa0735510:intron | 35.0% |
| AGCAAGCACAGAATTTAACA+CGG | + | chr5_1:50854872-50854891 | None:intergenic | 35.0% | |
| !!! | TCGCTTCTTTTTAGAATCTG+CGG | + | chr5_1:50855008-50855027 | None:intergenic | 35.0% |
| ATTCAAGAACACAAGCTTTC+AGG | - | chr5_1:50855052-50855071 | Msa0735510:intron | 35.0% | |
| ! | TTTTCTTCTTACGCATCGTA+AGG | + | chr5_1:50855285-50855304 | None:intergenic | 35.0% |
| CAACTGCTTCAGATTCTAAT+TGG | + | chr5_1:50855309-50855328 | None:intergenic | 35.0% | |
| ACAAGATACAAGTCACTCAA+CGG | - | chr5_1:50855390-50855409 | Msa0735510:intron | 35.0% | |
| GTTTCCATTTCTTCATGACT+GGG | + | chr5_1:50855493-50855512 | None:intergenic | 35.0% | |
| AGTTTCCATTTCTTCATGAC+TGG | + | chr5_1:50855494-50855513 | None:intergenic | 35.0% | |
| GAATTGAAGAGATTAGGTAG+TGG | - | chr5_1:50855654-50855673 | Msa0735510:five_prime_UTR | 35.0% | |
| CTAACTAAACTGTGCAGTTA+AGG | + | chr5_1:50855700-50855719 | None:intergenic | 35.0% | |
| !!! | CTAGGGTTTTGACTTTGGAT+TGG | - | chr5_1:50850405-50850424 | Msa0735510:three_prime_UTR | 40.0% |
| TCAACTGGTGAATGGAAGAA+AGG | - | chr5_1:50850505-50850524 | Msa0735510:CDS | 40.0% | |
| CAACTGGTGAATGGAAGAAA+GGG | - | chr5_1:50850506-50850525 | Msa0735510:CDS | 40.0% | |
| ACGCATAAATGCACAGTTAC+AGG | + | chr5_1:50850809-50850828 | None:intergenic | 40.0% | |
| TGTCAACGAATCTCAGTTCT+TGG | + | chr5_1:50850932-50850951 | None:intergenic | 40.0% | |
| TATCTTAATGTGTGCCCACT+TGG | - | chr5_1:50851146-50851165 | Msa0735510:intron | 40.0% | |
| CTTACTTTGTGCTCCTCTAA+AGG | - | chr5_1:50851195-50851214 | Msa0735510:intron | 40.0% | |
| CTTTACCTGCATTTGTTCTG+AGG | - | chr5_1:50851417-50851436 | Msa0735510:intron | 40.0% | |
| AGAAACCTCAGAACAAATGC+AGG | + | chr5_1:50851425-50851444 | None:intergenic | 40.0% | |
| AAATTCCACCGTCATGAAAC+TGG | - | chr5_1:50851684-50851703 | Msa0735510:intron | 40.0% | |
| ACTATACATCCACTGTGGAT+AGG | + | chr5_1:50851840-50851859 | None:intergenic | 40.0% | |
| TCGTTCGAGTACCTTGATTT+CGG | - | chr5_1:50851870-50851889 | Msa0735510:CDS | 40.0% | |
| TAACCTTACCAGACAAAGCT+GGG | + | chr5_1:50851928-50851947 | None:intergenic | 40.0% | |
| TTAACCTTACCAGACAAAGC+TGG | + | chr5_1:50851929-50851948 | None:intergenic | 40.0% | |
| !!! | GCATTGTTTTTGGTCGATTG+AGG | + | chr5_1:50852103-50852122 | None:intergenic | 40.0% |
| ! | TATTGATGGTAGACTACTGG+TGG | - | chr5_1:50852144-50852163 | Msa0735510:CDS | 40.0% |
| !! | CTTTTTGAGCTTGTGACCAA+CGG | + | chr5_1:50852231-50852250 | None:intergenic | 40.0% |
| TGGTCACAAGCTCAAAAAGA+TGG | - | chr5_1:50852232-50852251 | Msa0735510:CDS | 40.0% | |
| ACAAGCTCAAAAAGATGGCA+TGG | - | chr5_1:50852237-50852256 | Msa0735510:CDS | 40.0% | |
| GATGGCATGGTTTCATGTAT+TGG | - | chr5_1:50852250-50852269 | Msa0735510:CDS | 40.0% | |
| CACTTAACTTCTTCGGTCTT+TGG | + | chr5_1:50852277-50852296 | None:intergenic | 40.0% | |
| CTTTCACTAAAGATGGCTCT+AGG | - | chr5_1:50852418-50852437 | Msa0735510:CDS | 40.0% | |
| AAGAAATTCTGTTCTGCCGT+TGG | - | chr5_1:50852450-50852469 | Msa0735510:intron | 40.0% | |
| TTTACCTTCTCCAATCTCAG+TGG | + | chr5_1:50852476-50852495 | None:intergenic | 40.0% | |
| GATTGGAGAAGGTAAACTTG+AGG | - | chr5_1:50852480-50852499 | Msa0735510:intron | 40.0% | |
| TTGGCTCAACTATCAAAGAC+TGG | - | chr5_1:50852550-50852569 | Msa0735510:CDS | 40.0% | |
| AGCTCTTGATCAGTAATCCT+TGG | + | chr5_1:50852679-50852698 | None:intergenic | 40.0% | |
| AAGGATTACTGATCAAGAGC+TGG | - | chr5_1:50852678-50852697 | Msa0735510:CDS | 40.0% | |
| TCAAGAGCTGGAGAAATTGT+CGG | - | chr5_1:50852690-50852709 | Msa0735510:CDS | 40.0% | |
| ! | CAAAATACTAAGGGCTTGCT+AGG | + | chr5_1:50853003-50853022 | None:intergenic | 40.0% |
| ! | CTAGCAAGCCCTTAGTATTT+TGG | - | chr5_1:50853001-50853020 | Msa0735510:intron | 40.0% |
| ! | TGTAGTGCCCTTATTTGAGA+AGG | - | chr5_1:50853106-50853125 | Msa0735510:intron | 40.0% |
| ! | ATACCTCAGCACATGCTTTT+GGG | + | chr5_1:50853175-50853194 | None:intergenic | 40.0% |
| ! | TATACCTCAGCACATGCTTT+TGG | + | chr5_1:50853176-50853195 | None:intergenic | 40.0% |
| TCATACATGCCGCAATTACA+GGG | + | chr5_1:50853260-50853279 | None:intergenic | 40.0% | |
| TTGCGGCATGTATGACAAAT+TGG | - | chr5_1:50853265-50853284 | Msa0735510:intron | 40.0% | |
| CCTTCTGATTGCAAAATACG+AGG | + | chr5_1:50853314-50853333 | None:intergenic | 40.0% | |
| ! | CCTCGTATTTTGCAATCAGA+AGG | - | chr5_1:50853311-50853330 | Msa0735510:CDS | 40.0% |
| ACTCGTTCCCCATTATATCT+TGG | + | chr5_1:50853352-50853371 | None:intergenic | 40.0% | |
| ! | AAGATATAATGGGGAACGAG+TGG | - | chr5_1:50853351-50853370 | Msa0735510:CDS | 40.0% |
| CAGTAGGATGTATGTATTGG+AGG | - | chr5_1:50853406-50853425 | Msa0735510:CDS | 40.0% | |
| ATTGCAAGGACTGTATGCAA+GGG | + | chr5_1:50853439-50853458 | None:intergenic | 40.0% | |
| AATTGCAAGGACTGTATGCA+AGG | + | chr5_1:50853440-50853459 | None:intergenic | 40.0% | |
| CAGTCCTTGCAATTAAATGC+TGG | - | chr5_1:50853446-50853465 | Msa0735510:CDS | 40.0% | |
| ACATTTAGTCGGATAGATCC+TGG | - | chr5_1:50853558-50853577 | Msa0735510:CDS | 40.0% | |
| CATTTAGTCGGATAGATCCT+GGG | - | chr5_1:50853559-50853578 | Msa0735510:CDS | 40.0% | |
| ACATTCAGAACATCTGCGTT+TGG | - | chr5_1:50853884-50853903 | Msa0735510:CDS | 40.0% | |
| CATTCAGAACATCTGCGTTT+GGG | - | chr5_1:50853885-50853904 | Msa0735510:CDS | 40.0% | |
| GCTTAAAACTGCACATAGTG+AGG | - | chr5_1:50853926-50853945 | Msa0735510:intron | 40.0% | |
| TAAAACTGCACATAGTGAGG+AGG | - | chr5_1:50853929-50853948 | Msa0735510:intron | 40.0% | |
| AGTGAGGAGGAAATGAACAA+TGG | - | chr5_1:50853942-50853961 | Msa0735510:intron | 40.0% | |
| AAGAAGAGGTCTCGCAATAT+TGG | - | chr5_1:50853996-50854015 | Msa0735510:intron | 40.0% | |
| AGAAGAGGTCTCGCAATATT+GGG | - | chr5_1:50853997-50854016 | Msa0735510:intron | 40.0% | |
| CATTCATAGCGAAGATGCTA+TGG | - | chr5_1:50854040-50854059 | Msa0735510:intron | 40.0% | |
| !! | ATATTTGGCTTGACACTAGG+CGG | + | chr5_1:50854110-50854129 | None:intergenic | 40.0% |
| TTAATCTTTCCGAAAACCGG+GGG | + | chr5_1:50854269-50854288 | None:intergenic | 40.0% | |
| ATAATCTTACCCTGATGGAG+AGG | + | chr5_1:50854300-50854319 | None:intergenic | 40.0% | |
| ! | CTGATAGTGCTAAATGTGCA+AGG | + | chr5_1:50854326-50854345 | None:intergenic | 40.0% |
| GCAGACAGGTCAACATTATT+CGG | - | chr5_1:50854519-50854538 | Msa0735510:intron | 40.0% | |
| !!! | CTATGGTTTTTCAGGTCTTC+AGG | - | chr5_1:50854598-50854617 | Msa0735510:intron | 40.0% |
| !!! | TAGCAGGATCGTACCTTTTT+TGG | + | chr5_1:50854674-50854693 | None:intergenic | 40.0% |
| GTTTATCGGAACAGAGTTAG+AGG | - | chr5_1:50854731-50854750 | Msa0735510:intron | 40.0% | |
| ATTGCCTAAAACTGCTGCAT+TGG | + | chr5_1:50855092-50855111 | None:intergenic | 40.0% | |
| ATAGATGAAGCAGGTACTAG+TGG | - | chr5_1:50855355-50855374 | Msa0735510:intron | 40.0% | |
| TCATCCCAGTCATGAAGAAA+TGG | - | chr5_1:50855486-50855505 | Msa0735510:CDS | 40.0% | |
| GAGGCAGAATTGAAGAGATT+AGG | - | chr5_1:50855648-50855667 | Msa0735510:five_prime_UTR | 40.0% | |
| AGGAAGGTTCAACTGGTGAA+TGG | - | chr5_1:50850497-50850516 | Msa0735510:CDS | 45.0% | |
| AAAGGGTGGTCTTTGATCTC+TGG | - | chr5_1:50850523-50850542 | Msa0735510:CDS | 45.0% | |
| GCCAAACTCTGCAACAAATG+CGG | - | chr5_1:50850553-50850572 | Msa0735510:CDS | 45.0% | |
| CCAAACTCTGCAACAAATGC+GGG | - | chr5_1:50850554-50850573 | Msa0735510:CDS | 45.0% | |
| CGTGTTTGAATCTCAGCCTT+TGG | - | chr5_1:50850826-50850845 | Msa0735510:CDS | 45.0% | |
| TTAATGTGTGCCCACTTGGT+TGG | - | chr5_1:50851150-50851169 | Msa0735510:intron | 45.0% | |
| ! | TTGTGCTCCTCTAAAGGTCT+CGG | - | chr5_1:50851201-50851220 | Msa0735510:intron | 45.0% |
| ATCAAACCCGAGACCTTTAG+AGG | + | chr5_1:50851211-50851230 | None:intergenic | 45.0% | |
| ATTCCCTCTGATGCCAGTTT+GGG | - | chr5_1:50851229-50851248 | Msa0735510:intron | 45.0% | |
| AGTCAGAGCAAGACTCTGTA+TGG | + | chr5_1:50851264-50851283 | None:intergenic | 45.0% | |
| !! | ATTGGACCCCTTGGATTAGT+CGG | - | chr5_1:50851316-50851335 | Msa0735510:intron | 45.0% |
| CAATGACCGACTAATCCAAG+GGG | + | chr5_1:50851325-50851344 | None:intergenic | 45.0% | |
| CCAATGACCGACTAATCCAA+GGG | + | chr5_1:50851326-50851345 | None:intergenic | 45.0% | |
| !! | CCTTGGATTAGTCGGTCATT+GGG | - | chr5_1:50851324-50851343 | Msa0735510:intron | 45.0% |
| ! | CATTGACTATCCCCTGCTTA+CGG | - | chr5_1:50851600-50851619 | Msa0735510:intron | 45.0% |
| TCCTCCATCCAGTTTCATGA+CGG | + | chr5_1:50851695-50851714 | None:intergenic | 45.0% | |
| GAAATGCAGCAATTGCAGCA+AGG | - | chr5_1:50851713-50851732 | Msa0735510:CDS | 45.0% | |
| ! | TTTTTGCAGCCTATCCACAG+TGG | - | chr5_1:50851828-50851847 | Msa0735510:intron | 45.0% |
| TTCGAGTACCTTGATTTCGG+TGG | - | chr5_1:50851873-50851892 | Msa0735510:CDS | 45.0% | |
| ! | ATGTGTCGGTATCACAATGG+CGG | + | chr5_1:50852009-50852028 | None:intergenic | 45.0% |
| ! | TTTTTCCCCTTCACATCAGC+AGG | + | chr5_1:50852634-50852653 | None:intergenic | 45.0% |
| TACTTTCTCGATACTGGCCA+AGG | - | chr5_1:50852659-50852678 | Msa0735510:CDS | 45.0% | |
| CAAGAGCTGGAGAAATTGTC+GGG | - | chr5_1:50852691-50852710 | Msa0735510:CDS | 45.0% | |
| AAGAGCTGGAGAAATTGTCG+GGG | - | chr5_1:50852692-50852711 | Msa0735510:CDS | 45.0% | |
| GTCATACATGCCGCAATTAC+AGG | + | chr5_1:50853261-50853280 | None:intergenic | 45.0% | |
| TTGCAAGGACTGTATGCAAG+GGG | + | chr5_1:50853438-50853457 | None:intergenic | 45.0% | |
| TGAGGTGCACCAGAAAAGTT+TGG | + | chr5_1:50853789-50853808 | None:intergenic | 45.0% | |
| GAACATCTGCGTTTGGGTAA+TGG | - | chr5_1:50853891-50853910 | Msa0735510:CDS | 45.0% | |
| !! | TGGGTAATGGAACTGCTGAT+TGG | - | chr5_1:50853904-50853923 | Msa0735510:CDS | 45.0% |
| ACTGAAACCAGTTGCTGCAA+TGG | + | chr5_1:50853969-50853988 | None:intergenic | 45.0% | |
| ! | ATTTAGGAACCCCCGGTTTT+CGG | - | chr5_1:50854257-50854276 | Msa0735510:intron | 45.0% |
| ! | CAAATGTTTGGGATGCAGAC+AGG | - | chr5_1:50854505-50854524 | Msa0735510:intron | 45.0% |
| ! | CTTGCCAATGCAGCAGTTTT+AGG | - | chr5_1:50855085-50855104 | Msa0735510:intron | 45.0% |
| GAATCACCACAAAACATCCG+AGG | - | chr5_1:50855146-50855165 | Msa0735510:intron | 45.0% | |
| ATTCAACCACCAAGTGGACA+GGG | - | chr5_1:50855199-50855218 | Msa0735510:intron | 45.0% | |
| ! | TCATGTTTTCCCTGTCCACT+TGG | + | chr5_1:50855211-50855230 | None:intergenic | 45.0% |
| TACAAGTCACTCAACGGATG+AGG | - | chr5_1:50855396-50855415 | Msa0735510:intron | 45.0% | |
| ACAAGTCACTCAACGGATGA+GGG | - | chr5_1:50855397-50855416 | Msa0735510:intron | 45.0% | |
| !!! | ATTTTTGAAAATATAATTAA+AGG | - | chr5_1:50853703-50853722 | Msa0735510:CDS | 5.0% |
| !!! | TTTTTGAAAATATAATTAAA+GGG | - | chr5_1:50853704-50853723 | Msa0735510:CDS | 5.0% |
| !! | AAATATCTTATAATATATAT+TGG | - | chr5_1:50854411-50854430 | Msa0735510:intron | 5.0% |
| !!! | TAATTAATTCTTATATTTTA+TGG | - | chr5_1:50854968-50854987 | Msa0735510:intron | 5.0% |
| CTGGTGAATGGAAGAAAGGG+TGG | - | chr5_1:50850509-50850528 | Msa0735510:CDS | 50.0% | |
| GGTGGTCTTTGATCTCTGGT+GGG | - | chr5_1:50850527-50850546 | Msa0735510:CDS | 50.0% | |
| ! | CCCGCATTTGTTGCAGAGTT+TGG | + | chr5_1:50850557-50850576 | None:intergenic | 50.0% |
| TCGTTGACAGCGTGATACTC+CGG | - | chr5_1:50850943-50850962 | Msa0735510:CDS | 50.0% | |
| ! | TGTGCTCCTCTAAAGGTCTC+GGG | - | chr5_1:50851202-50851221 | Msa0735510:intron | 50.0% |
| GATTCCCTCTGATGCCAGTT+TGG | - | chr5_1:50851228-50851247 | Msa0735510:intron | 50.0% | |
| !! | CCCTTGGATTAGTCGGTCAT+TGG | - | chr5_1:50851323-50851342 | Msa0735510:intron | 50.0% |
| CCCAATGACCGACTAATCCA+AGG | + | chr5_1:50851327-50851346 | None:intergenic | 50.0% | |
| TCCACCGTCATGAAACTGGA+TGG | - | chr5_1:50851688-50851707 | Msa0735510:intron | 50.0% | |
| TCCATCCAGTTTCATGACGG+TGG | + | chr5_1:50851692-50851711 | None:intergenic | 50.0% | |
| ACCGTCATGAAACTGGATGG+AGG | - | chr5_1:50851691-50851710 | Msa0735510:intron | 50.0% | |
| TTACCAGACAAAGCTGGGAG+GGG | + | chr5_1:50851923-50851942 | None:intergenic | 50.0% | |
| CTTACCAGACAAAGCTGGGA+GGG | + | chr5_1:50851924-50851943 | None:intergenic | 50.0% | |
| AGACTACTGGTGGAACAAGC+TGG | - | chr5_1:50852154-50852173 | Msa0735510:CDS | 50.0% | |
| AAGTCGGTGAATCAAGCCGT+TGG | - | chr5_1:50852212-50852231 | Msa0735510:CDS | 50.0% | |
| TCTCCAATCTCAGTGGCCAA+CGG | + | chr5_1:50852469-50852488 | None:intergenic | 50.0% | |
| TTGGCCACTGAGATTGGAGA+AGG | - | chr5_1:50852469-50852488 | Msa0735510:intron | 50.0% | |
| TGATTTCTCATCCACCACGC+CGG | - | chr5_1:50852605-50852624 | Msa0735510:CDS | 50.0% | |
| AGAGCTGGAGAAATTGTCGG+GGG | - | chr5_1:50852693-50852712 | Msa0735510:CDS | 50.0% | |
| GTGTTAAGTCCGAGTGATGC+AGG | - | chr5_1:50853128-50853147 | Msa0735510:intron | 50.0% | |
| CCAATTCGACCTGCATCACT+CGG | + | chr5_1:50853140-50853159 | None:intergenic | 50.0% | |
| CAATGGTCCATTGCAGCAAC+TGG | - | chr5_1:50853959-50853978 | Msa0735510:intron | 50.0% | |
| AAAACCAGTGCCTCTCCATC+AGG | - | chr5_1:50854287-50854306 | Msa0735510:CDS | 50.0% | |
| AAACCAGTGCCTCTCCATCA+GGG | - | chr5_1:50854288-50854307 | Msa0735510:CDS | 50.0% | |
| CAAGGACTGCTTCAGTGCTT+TGG | + | chr5_1:50854936-50854955 | None:intergenic | 50.0% | |
| ! | CTGCATTGGCAAGAGCAACT+AGG | + | chr5_1:50855078-50855097 | None:intergenic | 50.0% |
| ! | ACGATGCCTCGGATGTTTTG+TGG | + | chr5_1:50855155-50855174 | None:intergenic | 50.0% |
| CACACGATACAAGTGCATCC+AGG | + | chr5_1:50855178-50855197 | None:intergenic | 50.0% | |
| GTGTGCATTCAACCACCAAG+TGG | - | chr5_1:50855193-50855212 | Msa0735510:intron | 50.0% | |
| CATTCAACCACCAAGTGGAC+AGG | - | chr5_1:50855198-50855217 | Msa0735510:intron | 50.0% | |
| ! | TGTTTTCCCTGTCCACTTGG+TGG | + | chr5_1:50855208-50855227 | None:intergenic | 50.0% |
| GCTTAAGAGTCTCACAGGCA+AGG | + | chr5_1:50855249-50855268 | None:intergenic | 50.0% | |
| GCATCGTAAGGCTCTTGAAC+CGG | + | chr5_1:50855273-50855292 | None:intergenic | 50.0% | |
| GATGAAGCAGGTACTAGTGG+TGG | - | chr5_1:50855358-50855377 | Msa0735510:intron | 50.0% | |
| ACGGATGAGGGAAGCCTAAA+TGG | - | chr5_1:50855409-50855428 | Msa0735510:intron | 50.0% | |
| GATGAGGGAAGCCTAAATGG+AGG | - | chr5_1:50855412-50855431 | Msa0735510:intron | 50.0% | |
| CCTCAAGCTGACCTCCATTT+AGG | + | chr5_1:50855426-50855445 | None:intergenic | 50.0% | |
| CCTAAATGGAGGTCAGCTTG+AGG | - | chr5_1:50855423-50855442 | Msa0735510:intron | 50.0% | |
| GGGTGGTCTTTGATCTCTGG+TGG | - | chr5_1:50850526-50850545 | Msa0735510:CDS | 55.0% | |
| !! | TGCCCACTTGGTTGGCCTAA+CGG | - | chr5_1:50851158-50851177 | Msa0735510:intron | 55.0% |
| CACCGTTAGGCCAACCAAGT+GGG | + | chr5_1:50851163-50851182 | None:intergenic | 55.0% | |
| ACACCGTTAGGCCAACCAAG+TGG | + | chr5_1:50851164-50851183 | None:intergenic | 55.0% | |
| !! | CTTGGTTGGCCTAACGGTGT+TGG | - | chr5_1:50851164-50851183 | Msa0735510:intron | 55.0% |
| !! | TTGGCCTAACGGTGTTGGCT+TGG | - | chr5_1:50851169-50851188 | Msa0735510:intron | 55.0% |
| !! | TGGCCTAACGGTGTTGGCTT+GGG | - | chr5_1:50851170-50851189 | Msa0735510:intron | 55.0% |
| GATCCCAAGCCAACACCGTT+AGG | + | chr5_1:50851176-50851195 | None:intergenic | 55.0% | |
| CCACCCAAACTGGCATCAGA+GGG | + | chr5_1:50851235-50851254 | None:intergenic | 55.0% | |
| CCTCTGATGCCAGTTTGGGT+GGG | - | chr5_1:50851233-50851252 | Msa0735510:intron | 55.0% | |
| !! | ATGGACTAGCCCACCCAAAC+TGG | + | chr5_1:50851245-50851264 | None:intergenic | 55.0% |
| AATCCCACCGTCCAATTGCG+GGG | + | chr5_1:50851299-50851318 | None:intergenic | 55.0% | |
| CAATCCCACCGTCCAATTGC+GGG | + | chr5_1:50851300-50851319 | None:intergenic | 55.0% | |
| CCAATCCCACCGTCCAATTG+CGG | + | chr5_1:50851301-50851320 | None:intergenic | 55.0% | |
| AAGCTGGGAGGGGTTAACAC+AGG | + | chr5_1:50851913-50851932 | None:intergenic | 55.0% | |
| ! | TAACCCCTCCCAGCTTTGTC+TGG | - | chr5_1:50851917-50851936 | Msa0735510:CDS | 55.0% |
| CCTTACCAGACAAAGCTGGG+AGG | + | chr5_1:50851925-50851944 | None:intergenic | 55.0% | |
| ! | CCTCCCAGCTTTGTCTGGTA+AGG | - | chr5_1:50851922-50851941 | Msa0735510:CDS | 55.0% |
| CTGGTGGAACAAGCTGGCAA+AGG | - | chr5_1:50852160-50852179 | Msa0735510:CDS | 55.0% | |
| TTCCCCTTCACATCAGCAGG+TGG | + | chr5_1:50852631-50852650 | None:intergenic | 55.0% | |
| CCGAGTGATGCAGGTCGAAT+TGG | - | chr5_1:50853137-50853156 | Msa0735510:intron | 55.0% | |
| ! | GCTCCCAAAAGCATGTGCTG+AGG | - | chr5_1:50853169-50853188 | Msa0735510:intron | 55.0% |
| !! | TTTGGCTTGACACTAGGCGG+CGG | + | chr5_1:50854107-50854126 | None:intergenic | 55.0% |
| ! | TTACCCTGATGGAGAGGCAC+TGG | + | chr5_1:50854294-50854313 | None:intergenic | 55.0% |
| GGTTCTGCATCAGACCAGCT+CGG | - | chr5_1:50854619-50854638 | Msa0735510:intron | 55.0% | |
| ATCAGACCAGCTCGGTCCAA+AGG | - | chr5_1:50854627-50854646 | Msa0735510:intron | 55.0% | |
| CTTGTTCCTTTGGACCGAGC+TGG | + | chr5_1:50854636-50854655 | None:intergenic | 55.0% | |
| !! | AAACATCCGAGGCATCGTCC+TGG | - | chr5_1:50855157-50855176 | Msa0735510:intron | 55.0% |
| CCTGTGAGACTCTTAAGCGC+CGG | - | chr5_1:50855251-50855270 | Msa0735510:intron | 55.0% | |
| GGTTGTTGAGCCTAGTGCTG+CGG | - | chr5_1:50855444-50855463 | Msa0735510:CDS | 55.0% | |
| GTTGTTGAGCCTAGTGCTGC+GGG | - | chr5_1:50855445-50855464 | Msa0735510:CDS | 55.0% | |
| TCCAATTGTCCCGCAGCACT+AGG | + | chr5_1:50855457-50855476 | None:intergenic | 55.0% | |
| CCCTCTGATGCCAGTTTGGG+TGG | - | chr5_1:50851232-50851251 | Msa0735510:intron | 60.0% | |
| CCCACCCAAACTGGCATCAG+AGG | + | chr5_1:50851236-50851255 | None:intergenic | 60.0% | |
| TAAATGGGCCCCCCCGCAAT+TGG | - | chr5_1:50851285-50851304 | Msa0735510:intron | 60.0% | |
| ATCCCACCGTCCAATTGCGG+GGG | + | chr5_1:50851298-50851317 | None:intergenic | 60.0% | |
| CCGCAATTGGACGGTGGGAT+TGG | - | chr5_1:50851298-50851317 | Msa0735510:intron | 60.0% | |
| CTGCCGTTGGCCACTGAGAT+TGG | - | chr5_1:50852463-50852482 | Msa0735510:intron | 60.0% | |
| CCTTCACATCAGCAGGTGGC+CGG | + | chr5_1:50852627-50852646 | None:intergenic | 60.0% | |
| CGGCCACCTGCTGATGTGAA+GGG | - | chr5_1:50852625-50852644 | Msa0735510:CDS | 60.0% | |
| GGCCACCTGCTGATGTGAAG+GGG | - | chr5_1:50852626-50852645 | Msa0735510:CDS | 60.0% | |
| CAGCTGACGACGACTCGTCA+GGG | + | chr5_1:50855126-50855145 | None:intergenic | 60.0% | |
| GTGCATCCAGGACGATGCCT+CGG | + | chr5_1:50855166-50855185 | None:intergenic | 60.0% | |
| CCGGCGCTTAAGAGTCTCAC+AGG | + | chr5_1:50855254-50855273 | None:intergenic | 60.0% | |
| GCCTAGTGCTGCGGGACAAT+TGG | - | chr5_1:50855453-50855472 | Msa0735510:CDS | 60.0% | |
| TCCCACCGTCCAATTGCGGG+GGG | + | chr5_1:50851297-50851316 | None:intergenic | 65.0% | |
| GACGGTGGGATTGGACCCCT+TGG | - | chr5_1:50851307-50851326 | Msa0735510:intron | 65.0% | |
| CCGGCCACCTGCTGATGTGA+AGG | - | chr5_1:50852624-50852643 | Msa0735510:CDS | 65.0% | |
| CCAGCTGACGACGACTCGTC+AGG | + | chr5_1:50855127-50855146 | None:intergenic | 65.0% | |
| CCTGACGAGTCGTCGTCAGC+TGG | - | chr5_1:50855124-50855143 | Msa0735510:intron | 65.0% | |
| TGGGCCCCCCCGCAATTGGA+CGG | - | chr5_1:50851289-50851308 | Msa0735510:intron | 70.0% | |
| CCCACCGTCCAATTGCGGGG+GGG | + | chr5_1:50851296-50851315 | None:intergenic | 70.0% | |
| CCCCCCCGCAATTGGACGGT+GGG | - | chr5_1:50851293-50851312 | Msa0735510:intron | 70.0% | |
| ACATCAGCAGGTGGCCGGCG+TGG | + | chr5_1:50852622-50852641 | None:intergenic | 70.0% | |
| GCCCCCCCGCAATTGGACGG+TGG | - | chr5_1:50851292-50851311 | Msa0735510:intron | 75.0% | |
| TCAGCAGGTGGCCGGCGTGG+TGG | + | chr5_1:50852619-50852638 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 50850240 | 50855775 | 50850240 | ID=Msa0735510;Name=Msa0735510 |
| chr5_1 | mRNA | 50850240 | 50855775 | 50850240 | ID=Msa0735510-mRNA-1;Parent=Msa0735510;Name=Msa0735510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=223|1|0.90|1|1|1|11|232|786 |
| chr5_1 | exon | 50850240 | 50851004 | 50850240 | ID=Msa0735510-mRNA-1:exon:14355;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50851336 | 50851403 | 50851336 | ID=Msa0735510-mRNA-1:exon:14354;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50851706 | 50851752 | 50851706 | ID=Msa0735510-mRNA-1:exon:14353;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50851849 | 50852274 | 50851849 | ID=Msa0735510-mRNA-1:exon:14352;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50852383 | 50852459 | 50852383 | ID=Msa0735510-mRNA-1:exon:14351;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50852539 | 50852713 | 50852539 | ID=Msa0735510-mRNA-1:exon:14350;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50852825 | 50852921 | 50852825 | ID=Msa0735510-mRNA-1:exon:14349;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50853299 | 50853939 | 50853299 | ID=Msa0735510-mRNA-1:exon:14348;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50854077 | 50854178 | 50854077 | ID=Msa0735510-mRNA-1:exon:14347;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50854281 | 50854362 | 50854281 | ID=Msa0735510-mRNA-1:exon:14346;Parent=Msa0735510-mRNA-1 |
| chr5_1 | exon | 50855440 | 50855775 | 50855440 | ID=Msa0735510-mRNA-1:exon:14345;Parent=Msa0735510-mRNA-1 |
| chr5_1 | five_prime_UTR | 50855553 | 50855775 | 50855553 | ID=Msa0735510-mRNA-1:five_prime_utr;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50855440 | 50855552 | 50855440 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50854281 | 50854362 | 50854281 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50854077 | 50854178 | 50854077 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50853299 | 50853939 | 50853299 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50852825 | 50852921 | 50852825 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50852539 | 50852713 | 50852539 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50852383 | 50852459 | 50852383 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50851849 | 50852274 | 50851849 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50851706 | 50851752 | 50851706 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50851336 | 50851403 | 50851336 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | CDS | 50850472 | 50851004 | 50850472 | ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1 |
| chr5_1 | three_prime_UTR | 50850240 | 50850471 | 50850240 | ID=Msa0735510-mRNA-1:three_prime_utr;Parent=Msa0735510-mRNA-1 |
| Gene Sequence |
| Protein sequence |
