AlfalfaGEDB | Msa0735510

M. sativa cultivar zhongmu-4 / Msa0735510

KEGG: -
GO: -
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0735510	XP_003616034.2	95.547	786	35	0	1	786	1	786	0.0	1526

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0735510	sp\|Q6Z3U3\|Y7797_ORYSJ	41.225	849	394	21	6	771	17	843	8.49e-180	543

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0735510	G7K0T7	95.547	786	35	0	1	786	1	786	0.0	1526

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TFs/TRs:

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Gene ID	Type	Classification
Msa0735510	TF	B3

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0735510	MtrunA17_Chr5g0432721	95.547	786	35	0	1	786	1	786	0.0	1526
Msa0735510	MtrunA17_Chr3g0107701	55.833	840	301	14	1	778	1	832	0.0	848
Msa0735510	MtrunA17_Chr4g0012861	42.823	836	397	12	1	777	1	814	0.0	611
Msa0735510	MtrunA17_Chr2g0281191	41.058	548	223	12	283	774	314	817	3.35e-109	354
Msa0735510	MtrunA17_Chr2g0281191	43.066	137	60	5	6	135	31	156	2.82e-23	105
Msa0735510	MtrunA17_Chr7g0244871	58.065	93	39	0	314	406	5	97	2.38e-32	120
Msa0735510	MtrunA17_Chr7g0251891	48.235	85	43	1	321	404	16	100	1.82e-19	87.4
Msa0735510	MtrunA17_Chr7g0237841	39.216	102	60	2	321	420	623	724	1.45e-15	81.3
Msa0735510	MtrunA17_Chr1g0178071	37.037	135	64	6	302	422	54	181	4.97e-15	77.0
Msa0735510	MtrunA17_Chr5g0422501	41.818	110	47	4	321	417	235	340	5.40e-14	75.1

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0735510	AT4G32010.2	41.019	746	315	14	3	706	4	666	4.75e-175	523
Msa0735510	AT4G32010.1	40.800	750	315	15	3	706	4	670	2.78e-173	518
Msa0735510	AT2G30470.1	40.241	830	343	23	1	774	6	738	5.30e-172	515
Msa0735510	AT4G21550.2	33.554	453	259	10	3	437	14	442	5.87e-69	237
Msa0735510	AT4G21550.3	33.554	453	259	10	3	437	14	442	3.77e-68	235
Msa0735510	AT4G21550.1	33.554	453	259	10	3	437	14	442	6.95e-68	238
Msa0735510	AT4G21550.1	40.336	119	56	4	657	774	551	655	2.53e-12	70.9
Msa0735510	AT3G26790.1	45.882	85	45	1	321	404	91	175	6.21e-18	85.9
Msa0735510	AT3G24650.1	41.176	102	58	2	321	420	571	672	6.79e-16	82.4
Msa0735510	AT1G28300.1	41.000	100	57	2	321	419	170	268	1.69e-15	79.3

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Find 205 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCAGTGCCTCTCCATC+AGG	0.394979	5_1:-50851706	Msa0735510:CDS
AAACATCCGAGGCATCGTCC+TGG	0.526966	5_1:-50850836	Msa0735510:CDS
AAACCAGTGCCTCTCCATCA+GGG	0.622368	5_1:-50851705	Msa0735510:intron
AAAGGGTGGTCTTTGATCTC+TGG	0.456650	5_1:-50855470	Msa0735510:CDS
AAATTCCACCGTCATGAAAC+TGG	0.376289	5_1:-50854309	Msa0735510:CDS
AACAATGCAAGTGATCGATA+TGG	0.408713	5_1:-50853878	Msa0735510:CDS
AACTTATACCACCGAAATCA+AGG	0.500512	5_1:+50854112	None:intergenic
AAGAAATTCTGTTCTGCCGT+TGG	0.479555	5_1:-50853543	Msa0735510:CDS
AAGAAGAGGTCTCGCAATAT+TGG	0.296576	5_1:-50851997	Msa0735510:CDS
AAGAGCTGGAGAAATTGTCG+GGG	0.668493	5_1:-50853301	Msa0735510:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAATCTTGAATCTTGAAAC+TGG	-	chr5_1:50850265-50850284	Msa0735510:three_prime_UTR	30.0%
TGATTTCAACACTAACATTG+AGG	-	chr5_1:50850365-50850384	Msa0735510:three_prime_UTR	30.0%
TGTTCTTATGAGTTCATGTT+GGG	-	chr5_1:50850727-50850746	Msa0735510:CDS	30.0%
AAAACCCCAGAAAAGAAAAA+GGG	+	chr5_1:50850777-50850796	None:intergenic	30.0%
AAATGTAGACTGAACAGAAA+GGG	+	chr5_1:50851088-50851107	None:intergenic	30.0%
AAGTCCATGTTGCAATTTAT+AGG	-	chr5_1:50851478-50851497	Msa0735510:intron	30.0%
AGTCCATGTTGCAATTTATA+GGG	-	chr5_1:50851479-50851498	Msa0735510:intron	30.0%
TTACCCTATAAATTGCAACA+TGG	+	chr5_1:50851485-50851504	None:intergenic	30.0%
AAATTAAGAATCCGTAAGCA+GGG	+	chr5_1:50851614-50851633	None:intergenic	30.0%
TAAATTAAGAATCCGTAAGC+AGG	+	chr5_1:50851615-50851634	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	50850240	50855775	50850240	ID=Msa0735510;Name=Msa0735510
chr5_1	mRNA	50850240	50855775	50850240	ID=Msa0735510-mRNA-1;Parent=Msa0735510;Name=Msa0735510-mRNA-1;_AED=0.10;_eAED=0.10;_QI=223\|1\|0.90\|1\|1\|1\|11\|232\|786
chr5_1	exon	50850240	50851004	50850240	ID=Msa0735510-mRNA-1:exon:14355;Parent=Msa0735510-mRNA-1
chr5_1	exon	50851336	50851403	50851336	ID=Msa0735510-mRNA-1:exon:14354;Parent=Msa0735510-mRNA-1
chr5_1	exon	50851706	50851752	50851706	ID=Msa0735510-mRNA-1:exon:14353;Parent=Msa0735510-mRNA-1
chr5_1	exon	50851849	50852274	50851849	ID=Msa0735510-mRNA-1:exon:14352;Parent=Msa0735510-mRNA-1
chr5_1	exon	50852383	50852459	50852383	ID=Msa0735510-mRNA-1:exon:14351;Parent=Msa0735510-mRNA-1
chr5_1	exon	50852539	50852713	50852539	ID=Msa0735510-mRNA-1:exon:14350;Parent=Msa0735510-mRNA-1
chr5_1	exon	50852825	50852921	50852825	ID=Msa0735510-mRNA-1:exon:14349;Parent=Msa0735510-mRNA-1
chr5_1	exon	50853299	50853939	50853299	ID=Msa0735510-mRNA-1:exon:14348;Parent=Msa0735510-mRNA-1
chr5_1	exon	50854077	50854178	50854077	ID=Msa0735510-mRNA-1:exon:14347;Parent=Msa0735510-mRNA-1
chr5_1	exon	50854281	50854362	50854281	ID=Msa0735510-mRNA-1:exon:14346;Parent=Msa0735510-mRNA-1
chr5_1	exon	50855440	50855775	50855440	ID=Msa0735510-mRNA-1:exon:14345;Parent=Msa0735510-mRNA-1
chr5_1	five_prime_UTR	50855553	50855775	50855553	ID=Msa0735510-mRNA-1:five_prime_utr;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50855440	50855552	50855440	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50854281	50854362	50854281	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50854077	50854178	50854077	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50853299	50853939	50853299	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50852825	50852921	50852825	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50852539	50852713	50852539	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50852383	50852459	50852383	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50851849	50852274	50851849	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50851706	50851752	50851706	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50851336	50851403	50851336	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	CDS	50850472	50851004	50850472	ID=Msa0735510-mRNA-1:cds;Parent=Msa0735510-mRNA-1
chr5_1	three_prime_UTR	50850240	50850471	50850240	ID=Msa0735510-mRNA-1:three_prime_utr;Parent=Msa0735510-mRNA-1

Gene Sequence

>Msa0735510

ATGGGGGTTGAAGTGTGTATGAATAATTATTGTAAGGAAGGTTCAACTGGTGAATGGAAGAAAGGGTGGTCTTTGATCTCTGGTGGGTTTGCCAAACTCTGCAACAAATGCGGACTTGCCTATGAGAATTCACTTTTCTGTGATAAATTCCACCGTCATGAAACTGGATGGAGGAAATGCAGCAATTGCAGCAAGCCTATCCACAGTGGATGTATAGTATCAAAGTCTTCGTTCGAGTACCTTGATTTCGGTGGTATAAGTTGTGTTACCTGTGTTAACCCCTCCCAGCTTTGTCTGGATACTGAAAATCATAATAGGTTCCCTCAATCGACCAAAAACAATGCAAGTGATCGATATGGTGAACATATTGATGGTAGACTACTGGTGGAACAAGCTGGCAAAGGAAACCTTATGCAGTTGTGTAGAATTGGTGAAGTCGGTGAATCAAGCCGTTGGTCACAAGCTCAAAAAGATGGCATGGTTTCATGTATTGGTCCAAAGACCGAAGAAGTTAAGTGTCAATTCAACAAAGAGGATACAAGATTTTTGAATGTGATGAAACATTCTAGTCCTTTAACAGCATTTACTGCATTTGAAAATAATAGACCAACATGGGAGACTAAAAGTATAGATGAAACGCTTTCACTAAAGATGGCTCTAGGAACTTCATCAAGAAATTCTGTTCTGCCGTTGGCCACTGAGATTGGAGAAGGTAAACTTGAGGGTAAAACATCTTCTCATTTTCAACAAGGGCAAACATCTCAGTCTATATTGGCTCAACTATCAAAGACTGGAATTACCATGAATCTTGAAACAAATAAAGGCATGATTTCTCATCCACCACGCCGGCCACCTGCTGATGTGAAGGGGAAAAATCAGTTACTTTCTCGATACTGGCCAAGGATTACTGATCAAGAGCTGGAGAAATTGTCGGGGGATTTGAAGTCTACTGTAGTGCCCTTATTTGAGAAGGTGTTAAGTCCGAGTGATGCAGGTCGAATTGGTCGTCTTGTGCTCCCAAAAGCATGTGCTGAGGCTTTTCTTCCTCGTATTTTGCAATCAGAAGGTGTTCCTTTACAGTTCCAAGATATAATGGGGAACGAGTGGACTTTTCAGTTCAGATTTTGGCCTAATAACAACAGTAGGATGTATGTATTGGAGGGTGTGACCCCTTGCATACAGTCCTTGCAATTAAATGCTGGTGATACTGTAACATTTAGTCGGATAGATCCTGGGAAAAAATTTCTATTTGGTTTTAGAAGGTCATTGACTTCTGTTGTTACACAGGATGCCTCTACATCTTCTCATTCTAACGGCATTTCGATAAAGGATCCAAACTTTTCTGGTGCACCTCAGAATTTGAACTCATTAGGTAGTTTTTCTAATCTTCTTCAATCAATGAAAGGTAATGGGGAACCTTACTTAAATGGACATTCAGAACATCTGCGTTTGGGTAATGGAACTGCTGATTGGCTTAAAACTGCACATAGTGAGGAGGAAATGAACAATGGTCCATTGCAGCAACTGGTTTCAGTTTCAGAGAAGAAGAGGTCTCGCAATATTGGGACGAAAACTAAGAGGTTGCACATTCATAGCGAAGATGCTATGGAATTGAGACTTACATGGGAAGAAGCACAAGAATTTCTTTGTCCGCCGCCTAGTGTCAAGCCAAATATTGTAACAATTGAGGACCAAGTATTTGAAGAATATGATGAACCCCCGGTTTTCGGAAAGATTAAAACCAGTGCCTCTCCATCAGGGTCTTCAGGTTCTGCATCAGACCAGCTCGGTCCAAAGGAACAAGAAAGTCTTCAAAGAACCAAAAAAGATTCTAAAAAGAAGCGAAAAATTGCTGAAAAGAGCAAGTCAATTCAAGAACACAAGCTTTCAGGCCTAGTTGCTCTTGCCAATGCAGCAGTTTTAGGCAATAATCTTGCTGACCCTGACGAGTCGTCGTCAGCTGGAATCACCACAAAACATCCGAGGCATCGTCCTGGATGCACTTGTATCGTGTGCATTCAACCACCAAGTGGACAGGGAAAACATGACCCGACATGCACTTGCCTTGCCTGTGAGACTCTTAAGCGCCGGTTCAAGAGCCTTACGATGCGTAAGAAGAAAAACCAATTAGAATCTGAAGCAGTTGCTGACCAAAACAATCAAATTAATCATATAGATGAAGCAGGTACTAGTGGTGGTGTAACGAGACAAGATACAAGTCACTCAACGGATGAGGGAAGCCTAAATGGAGGTCAGCTTGAGGTTGTTGAGCCTAGTGCTGCGGGACAATTGGATTTGAATTCTCATCCCAGTCATGAAGAAATGGAAACTGATACATATAACAGGCCAAAGCATGACTAG

Protein sequence

>Msa0735510

MGVEVCMNNYCKEGSTGEWKKGWSLISGGFAKLCNKCGLAYENSLFCDKFHRHETGWRKCSNCSKPIHSGCIVSKSSFEYLDFGGISCVTCVNPSQLCLDTENHNRFPQSTKNNASDRYGEHIDGRLLVEQAGKGNLMQLCRIGEVGESSRWSQAQKDGMVSCIGPKTEEVKCQFNKEDTRFLNVMKHSSPLTAFTAFENNRPTWETKSIDETLSLKMALGTSSRNSVLPLATEIGEGKLEGKTSSHFQQGQTSQSILAQLSKTGITMNLETNKGMISHPPRRPPADVKGKNQLLSRYWPRITDQELEKLSGDLKSTVVPLFEKVLSPSDAGRIGRLVLPKACAEAFLPRILQSEGVPLQFQDIMGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSLQLNAGDTVTFSRIDPGKKFLFGFRRSLTSVVTQDASTSSHSNGISIKDPNFSGAPQNLNSLGSFSNLLQSMKGNGEPYLNGHSEHLRLGNGTADWLKTAHSEEEMNNGPLQQLVSVSEKKRSRNIGTKTKRLHIHSEDAMELRLTWEEAQEFLCPPPSVKPNIVTIEDQVFEEYDEPPVFGKIKTSASPSGSSGSASDQLGPKEQESLQRTKKDSKKKRKIAEKSKSIQEHKLSGLVALANAAVLGNNLADPDESSSAGITTKHPRHRPGCTCIVCIQPPSGQGKHDPTCTCLACETLKRRFKSLTMRKKKNQLESEAVADQNNQINHIDEAGTSGGVTRQDTSHSTDEGSLNGGQLEVVEPSAAGQLDLNSHPSHEEMETDTYNRPKHD*