Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735670 | XP_003616071.2 | 84.956 | 226 | 28 | 4 | 1 | 222 | 1 | 224 | 6.96e-133 | 383 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735670 | sp|Q9FNN6|SRM1_ARATH | 34.637 | 179 | 92 | 7 | 21 | 179 | 12 | 185 | 2.12e-22 | 95.5 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735670 | G7K5U8 | 84.956 | 226 | 28 | 4 | 1 | 222 | 1 | 224 | 3.33e-133 | 383 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0735670 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735670 | MtrunA17_Chr5g0432941 | 84.956 | 226 | 28 | 4 | 1 | 222 | 1 | 224 | 6.40e-137 | 383 |
| Msa0735670 | MtrunA17_Chr5g0432921 | 82.222 | 225 | 36 | 3 | 1 | 222 | 1 | 224 | 9.39e-133 | 372 |
| Msa0735670 | MtrunA17_Chr1g0192061 | 46.479 | 142 | 59 | 2 | 70 | 209 | 19 | 145 | 3.99e-34 | 120 |
| Msa0735670 | MtrunA17_Chr1g0210471 | 38.547 | 179 | 95 | 6 | 20 | 186 | 23 | 198 | 5.54e-30 | 111 |
| Msa0735670 | MtrunA17_Chr1g0162081 | 34.021 | 194 | 83 | 8 | 18 | 179 | 9 | 189 | 2.76e-27 | 105 |
| Msa0735670 | MtrunA17_Chr8g0365011 | 35.838 | 173 | 89 | 6 | 15 | 173 | 2 | 166 | 1.21e-23 | 95.9 |
| Msa0735670 | MtrunA17_Chr7g0241761 | 31.068 | 206 | 122 | 7 | 7 | 194 | 21 | 224 | 5.01e-21 | 89.4 |
| Msa0735670 | MtrunA17_Chr3g0104071 | 35.366 | 164 | 86 | 7 | 12 | 158 | 34 | 194 | 3.54e-20 | 87.0 |
| Msa0735670 | MtrunA17_Chr5g0429521 | 32.632 | 190 | 106 | 8 | 7 | 179 | 15 | 199 | 1.80e-19 | 84.7 |
| Msa0735670 | MtrunA17_Chr4g0062741 | 29.500 | 200 | 98 | 7 | 21 | 179 | 8 | 205 | 1.96e-19 | 84.7 |
| Msa0735670 | MtrunA17_Chr5g0436501 | 31.579 | 171 | 104 | 7 | 20 | 179 | 26 | 194 | 2.20e-16 | 75.9 |
| Msa0735670 | MtrunA17_Chr5g0440731 | 36.885 | 122 | 67 | 5 | 80 | 195 | 77 | 194 | 1.86e-15 | 73.6 |
| Msa0735670 | MtrunA17_Chr5g0409841 | 45.977 | 87 | 43 | 2 | 113 | 195 | 93 | 179 | 3.54e-15 | 72.0 |
| Msa0735670 | MtrunA17_Chr5g0440741 | 43.820 | 89 | 44 | 3 | 113 | 195 | 101 | 189 | 2.54e-14 | 70.5 |
| Msa0735670 | MtrunA17_Chr4g0059701 | 38.000 | 100 | 53 | 3 | 62 | 157 | 36 | 130 | 7.29e-13 | 66.2 |
| Msa0735670 | MtrunA17_Chr5g0409831 | 56.250 | 48 | 20 | 1 | 113 | 159 | 78 | 125 | 2.65e-12 | 63.9 |
| Msa0735670 | MtrunA17_Chr8g0389241 | 47.059 | 68 | 33 | 2 | 114 | 180 | 107 | 172 | 4.30e-12 | 63.9 |
| Msa0735670 | MtrunA17_Chr6g0488471 | 51.613 | 62 | 27 | 2 | 114 | 174 | 99 | 158 | 5.41e-12 | 63.9 |
| Msa0735670 | MtrunA17_Chr6g0452791 | 60.870 | 46 | 17 | 1 | 114 | 158 | 82 | 127 | 6.50e-12 | 62.0 |
| Msa0735670 | MtrunA17_Chr3g0092621 | 45.455 | 66 | 34 | 2 | 114 | 178 | 86 | 150 | 1.36e-11 | 60.8 |
| Msa0735670 | MtrunA17_Chr5g0415191 | 50.000 | 56 | 27 | 1 | 104 | 158 | 94 | 149 | 1.60e-11 | 62.8 |
| Msa0735670 | MtrunA17_Chr4g0055931 | 33.645 | 107 | 67 | 3 | 86 | 190 | 69 | 173 | 2.75e-11 | 62.0 |
| Msa0735670 | MtrunA17_Chr3g0135671 | 60.870 | 46 | 17 | 1 | 114 | 158 | 93 | 138 | 6.28e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0735670 | AT5G04760.1 | 35.955 | 178 | 84 | 5 | 18 | 179 | 3 | 166 | 1.06e-23 | 94.7 |
| Msa0735670 | AT5G08520.1 | 34.637 | 179 | 92 | 7 | 21 | 179 | 12 | 185 | 2.16e-23 | 95.5 |
| Msa0735670 | AT3G10580.2 | 35.329 | 167 | 94 | 5 | 21 | 184 | 8 | 163 | 2.64e-21 | 89.4 |
| Msa0735670 | AT3G10580.1 | 35.329 | 167 | 94 | 5 | 21 | 184 | 8 | 163 | 4.02e-21 | 89.4 |
| Msa0735670 | AT5G23650.1 | 35.638 | 188 | 99 | 7 | 9 | 177 | 1 | 185 | 1.39e-20 | 88.6 |
| Msa0735670 | AT2G38090.1 | 31.280 | 211 | 107 | 8 | 10 | 196 | 18 | 214 | 2.07e-19 | 84.7 |
| Msa0735670 | AT5G58900.1 | 33.333 | 183 | 100 | 7 | 16 | 179 | 29 | 208 | 1.66e-18 | 82.4 |
| Msa0735670 | AT4G09450.1 | 37.143 | 140 | 78 | 4 | 20 | 157 | 6 | 137 | 4.94e-18 | 79.3 |
| Msa0735670 | AT1G49010.1 | 29.442 | 197 | 98 | 8 | 21 | 179 | 8 | 201 | 1.26e-17 | 80.1 |
| Msa0735670 | AT5G01200.1 | 30.693 | 202 | 111 | 7 | 5 | 179 | 14 | 213 | 6.47e-17 | 77.8 |
| Msa0735670 | AT5G05790.2 | 29.208 | 202 | 116 | 5 | 17 | 195 | 27 | 224 | 2.65e-16 | 76.3 |
| Msa0735670 | AT5G05790.1 | 29.208 | 202 | 116 | 5 | 17 | 195 | 27 | 224 | 2.65e-16 | 76.3 |
| Msa0735670 | AT3G11280.2 | 34.437 | 151 | 75 | 6 | 21 | 157 | 33 | 173 | 3.52e-15 | 72.8 |
| Msa0735670 | AT3G11280.1 | 34.437 | 151 | 75 | 6 | 21 | 157 | 33 | 173 | 3.52e-15 | 72.8 |
| Msa0735670 | AT3G10590.1 | 27.692 | 195 | 119 | 5 | 16 | 193 | 2 | 191 | 7.61e-14 | 68.2 |
| Msa0735670 | AT5G47390.1 | 36.207 | 116 | 55 | 5 | 84 | 193 | 79 | 181 | 2.51e-13 | 68.6 |
| Msa0735670 | AT1G70000.1 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.23e-12 | 65.9 |
| Msa0735670 | AT1G70000.2 | 53.571 | 56 | 25 | 1 | 104 | 158 | 90 | 145 | 1.23e-12 | 65.9 |
| Msa0735670 | AT5G61620.1 | 46.479 | 71 | 36 | 2 | 108 | 177 | 104 | 173 | 4.42e-11 | 61.6 |
Find 45 sgRNAs with CRISPR-Local
Find 150 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCATTTCCTTCACATAAA+TGG | 0.223126 | 5_1:+51139719 | Msa0735670:CDS |
| TTGAATTTCAACATTTAATT+CGG | 0.308654 | 5_1:-51139917 | None:intergenic |
| TTCTTAGTCTTATTCTTAGT+TGG | 0.323967 | 5_1:-51139000 | None:intergenic |
| AGATTCATAAGAAGGGAAAT+TGG | 0.369394 | 5_1:+51139636 | Msa0735670:CDS |
| GTCCTTACTGAGAAGAGGTT+TGG | 0.374736 | 5_1:-51139804 | None:intergenic |
| TTAGTCTTATTCTTAGTTGG+AGG | 0.415408 | 5_1:-51138997 | None:intergenic |
| GAAAATCTTGCTCTTGTTTG+CGG | 0.422028 | 5_1:+51138832 | Msa0735670:CDS |
| CTTCAACATTACCTCATTGA+AGG | 0.462445 | 5_1:+51139775 | Msa0735670:CDS |
| TAGTTGCCCTTATAGAGAAA+AGG | 0.463996 | 5_1:-51139869 | None:intergenic |
| GGGGATCGAGATTCATAAGA+AGG | 0.485700 | 5_1:+51139628 | Msa0735670:CDS |
| ATGAACTACACAAATAATGA+TGG | 0.488615 | 5_1:+51138721 | Msa0735670:CDS |
| GCATGGCTAGCACATTGACT+TGG | 0.494579 | 5_1:-51139692 | None:intergenic |
| TTCAACATTTAATTCGGATG+AGG | 0.495392 | 5_1:-51139911 | None:intergenic |
| TTCCATCTCTTCCTACCTCA+TGG | 0.497218 | 5_1:+51139831 | Msa0735670:CDS |
| AGTTGCCCTTATAGAGAAAA+GGG | 0.498666 | 5_1:-51139868 | None:intergenic |
| TATTTGTGTAGTTCATATGT+TGG | 0.507032 | 5_1:-51138714 | None:intergenic |
| CTAAGAAAGTGGTGAAACAT+TGG | 0.507701 | 5_1:+51139016 | Msa0735670:CDS |
| TCCCATGAGGTAGGAAGAGA+TGG | 0.508995 | 5_1:-51139833 | None:intergenic |
| GGATGAGGATAAAGAAGAGC+TGG | 0.516096 | 5_1:-51139896 | None:intergenic |
| TTGATGTACCATTTATGTGA+AGG | 0.524593 | 5_1:-51139727 | None:intergenic |
| TTCCAAACCTCTTCTCAGTA+AGG | 0.524962 | 5_1:+51139802 | Msa0735670:CDS |
| TAAGAATAAGACTAAGAAAG+TGG | 0.531612 | 5_1:+51139005 | Msa0735670:CDS |
| TTCAACATTACCTCATTGAA+GGG | 0.537386 | 5_1:+51139776 | Msa0735670:CDS |
| TTTATAGGTTATTTGTAGAG+GGG | 0.539836 | 5_1:+51139609 | Msa0735670:intron |
| AGGAAGTACAAGAAGGTCGA+TGG | 0.560186 | 5_1:+51138809 | Msa0735670:CDS |
| ATGTTGTCCTTACTGAGAAG+AGG | 0.560674 | 5_1:-51139809 | None:intergenic |
| CGTTCTCTTTGAATATCTTG+AGG | 0.562741 | 5_1:+51138789 | Msa0735670:CDS |
| TCCATCTCTTCCTACCTCAT+GGG | 0.564270 | 5_1:+51139832 | Msa0735670:CDS |
| TGAAGTAAAAGAACACTATG+AGG | 0.565587 | 5_1:+51138867 | Msa0735670:CDS |
| GAAAATCAAAGGAGTGGACA+TGG | 0.573641 | 5_1:+51138743 | Msa0735670:CDS |
| CTCAAGATATTCAAAGAGAA+CGG | 0.580373 | 5_1:-51138788 | None:intergenic |
| GGGATCGAGATTCATAAGAA+GGG | 0.590508 | 5_1:+51139629 | Msa0735670:CDS |
| AAATAATGATGGAAAATCAA+AGG | 0.595595 | 5_1:+51138732 | Msa0735670:CDS |
| TCTCTTCCTACCTCATGGGA+TGG | 0.596171 | 5_1:+51139836 | Msa0735670:CDS |
| GCATGACTTAGCACTCATTG+AGG | 0.603466 | 5_1:+51138897 | Msa0735670:CDS |
| GACTTAGCACTCATTGAGGA+AGG | 0.612605 | 5_1:+51138901 | Msa0735670:CDS |
| ATGATGGAAAATCAAAGGAG+TGG | 0.613850 | 5_1:+51138737 | Msa0735670:CDS |
| TATCTTGAGGAAGTACAAGA+AGG | 0.618040 | 5_1:+51138802 | Msa0735670:CDS |
| AAATTTCCATCCCATGAGGT+AGG | 0.632795 | 5_1:-51139842 | None:intergenic |
| TTTGGAATCTCCCTTCAATG+AGG | 0.633691 | 5_1:-51139786 | None:intergenic |
| GGAAGTACAAGAAGGTCGAT+GGG | 0.635752 | 5_1:+51138810 | Msa0735670:CDS |
| TGCCCTTATAGAGAAAAGGG+TGG | 0.670575 | 5_1:-51139865 | None:intergenic |
| AAAATCAAAGGAGTGGACAT+GGG | 0.673138 | 5_1:+51138744 | Msa0735670:CDS |
| ATTGGAGTGAAGAAGAACAC+AGG | 0.701675 | 5_1:+51139034 | Msa0735670:CDS |
| GTGGAAATTTCCATCCCATG+AGG | 0.722495 | 5_1:-51139846 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_1:51139256-51139275 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_1:51139255-51139274 | Msa0735670:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_1:51139256-51139275 | Msa0735670:intron | 10.0% |
| !!! | TTTTTTTATTTGTTGATAAA+AGG | - | chr5_1:51139256-51139275 | None:intergenic | 10.0% |
| !!! | TTTTATCAACAAATAAAAAA+AGG | + | chr5_1:51139255-51139274 | Msa0735670:intron | 10.0% |
| !! | TTTATCAACAAATAAAAAAA+GGG | + | chr5_1:51139256-51139275 | Msa0735670:intron | 10.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_1:51139158-51139177 | None:intergenic | 15.0% |
| !!! | AGTCAATTTATTTTATATCA+TGG | - | chr5_1:51139570-51139589 | None:intergenic | 15.0% |
| !!! | TTTACTAATTTCTCTTTTTA+CGG | - | chr5_1:51139158-51139177 | None:intergenic | 15.0% |
| !!! | AGTCAATTTATTTTATATCA+TGG | - | chr5_1:51139570-51139589 | None:intergenic | 15.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_1:51138732-51138751 | Msa0735670:CDS | 20.0% |
| !!! | ACAAATGATTTTATTTCGAA+AGG | + | chr5_1:51138946-51138965 | Msa0735670:CDS | 20.0% |
| !!! | GATACGTTTATTCTTTTATT+AGG | + | chr5_1:51139327-51139346 | Msa0735670:intron | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_1:51139457-51139476 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_1:51139456-51139475 | Msa0735670:intron | 20.0% |
| !! | CTATAAAAAAAAATGATGAG+AGG | - | chr5_1:51139596-51139615 | None:intergenic | 20.0% |
| !!! | CTCTCATCATTTTTTTTTAT+AGG | + | chr5_1:51139594-51139613 | Msa0735670:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_1:51139607-51139626 | Msa0735670:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_1:51139608-51139627 | Msa0735670:intron | 20.0% |
| !!! | AAATAATGATGGAAAATCAA+AGG | + | chr5_1:51138732-51138751 | Msa0735670:CDS | 20.0% |
| !!! | ACAAATGATTTTATTTCGAA+AGG | + | chr5_1:51138946-51138965 | Msa0735670:CDS | 20.0% |
| !!! | GATACGTTTATTCTTTTATT+AGG | + | chr5_1:51139327-51139346 | Msa0735670:intron | 20.0% |
| !!! | TTTCTTTTGAATCCAATTTA+AGG | - | chr5_1:51139457-51139476 | None:intergenic | 20.0% |
| !! | TTAAATTGGATTCAAAAGAA+AGG | + | chr5_1:51139456-51139475 | Msa0735670:intron | 20.0% |
| !! | CTATAAAAAAAAATGATGAG+AGG | - | chr5_1:51139596-51139615 | None:intergenic | 20.0% |
| !!! | CTCTCATCATTTTTTTTTAT+AGG | + | chr5_1:51139594-51139613 | Msa0735670:intron | 20.0% |
| !!! | TTTTTATAGGTTATTTGTAG+AGG | + | chr5_1:51139607-51139626 | Msa0735670:intron | 20.0% |
| !!! | TTTTATAGGTTATTTGTAGA+GGG | + | chr5_1:51139608-51139627 | Msa0735670:intron | 20.0% |
| ! | TATTTGTGTAGTTCATATGT+TGG | - | chr5_1:51138717-51138736 | None:intergenic | 25.0% |
| ! | ATGAACTACACAAATAATGA+TGG | + | chr5_1:51138721-51138740 | Msa0735670:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_1:51139003-51139022 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_1:51139005-51139024 | Msa0735670:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_1:51139106-51139125 | Msa0735670:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | + | chr5_1:51139293-51139312 | Msa0735670:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_1:51139442-51139461 | Msa0735670:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_1:51139450-51139469 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_1:51139523-51139542 | Msa0735670:intron | 25.0% |
| ! | TTTATAGGTTATTTGTAGAG+GGG | + | chr5_1:51139609-51139628 | Msa0735670:intron | 25.0% |
| ! | TATTTGTGTAGTTCATATGT+TGG | - | chr5_1:51138717-51138736 | None:intergenic | 25.0% |
| ! | ATGAACTACACAAATAATGA+TGG | + | chr5_1:51138721-51138740 | Msa0735670:CDS | 25.0% |
| !!! | TTCTTAGTCTTATTCTTAGT+TGG | - | chr5_1:51139003-51139022 | None:intergenic | 25.0% |
| ! | TAAGAATAAGACTAAGAAAG+TGG | + | chr5_1:51139005-51139024 | Msa0735670:CDS | 25.0% |
| !! | TTATTTTCTTCTTCTTCATG+TGG | + | chr5_1:51139106-51139125 | Msa0735670:intron | 25.0% |
| !!! | GAAGAACACATTACTTTTTA+CGG | + | chr5_1:51139293-51139312 | Msa0735670:intron | 25.0% |
| ! | TACTACCTTATTCCTTAAAT+TGG | + | chr5_1:51139442-51139461 | Msa0735670:intron | 25.0% |
| ! | TGAATCCAATTTAAGGAATA+AGG | - | chr5_1:51139450-51139469 | None:intergenic | 25.0% |
| ! | TTGACACTAACATATGTATT+GGG | + | chr5_1:51139523-51139542 | Msa0735670:intron | 25.0% |
| ! | TTTATAGGTTATTTGTAGAG+GGG | + | chr5_1:51139609-51139628 | Msa0735670:intron | 25.0% |
| CTCAAGATATTCAAAGAGAA+CGG | - | chr5_1:51138791-51138810 | None:intergenic | 30.0% | |
| TGAAGTAAAAGAACACTATG+AGG | + | chr5_1:51138867-51138886 | Msa0735670:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_1:51139000-51139019 | None:intergenic | 30.0% |
| ACCATAAAAGTAATGATGCA+GGG | - | chr5_1:51139407-51139426 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | - | chr5_1:51139408-51139427 | None:intergenic | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | + | chr5_1:51139522-51139541 | Msa0735670:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_1:51139636-51139655 | Msa0735670:CDS | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | + | chr5_1:51139719-51139738 | Msa0735670:CDS | 30.0% | |
| TTGATGTACCATTTATGTGA+AGG | - | chr5_1:51139730-51139749 | None:intergenic | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_1:51139776-51139795 | Msa0735670:CDS | 30.0% | |
| CTCAAGATATTCAAAGAGAA+CGG | - | chr5_1:51138791-51138810 | None:intergenic | 30.0% | |
| TGAAGTAAAAGAACACTATG+AGG | + | chr5_1:51138867-51138886 | Msa0735670:CDS | 30.0% | |
| !! | TTAGTCTTATTCTTAGTTGG+AGG | - | chr5_1:51139000-51139019 | None:intergenic | 30.0% |
| ACCATAAAAGTAATGATGCA+GGG | - | chr5_1:51139407-51139426 | None:intergenic | 30.0% | |
| AACCATAAAAGTAATGATGC+AGG | - | chr5_1:51139408-51139427 | None:intergenic | 30.0% | |
| CTTGACACTAACATATGTAT+TGG | + | chr5_1:51139522-51139541 | Msa0735670:intron | 30.0% | |
| AGATTCATAAGAAGGGAAAT+TGG | + | chr5_1:51139636-51139655 | Msa0735670:CDS | 30.0% | |
| AAGCATTTCCTTCACATAAA+TGG | + | chr5_1:51139719-51139738 | Msa0735670:CDS | 30.0% | |
| TTGATGTACCATTTATGTGA+AGG | - | chr5_1:51139730-51139749 | None:intergenic | 30.0% | |
| TTCAACATTACCTCATTGAA+GGG | + | chr5_1:51139776-51139795 | Msa0735670:CDS | 30.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_1:51138737-51138756 | Msa0735670:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_1:51138744-51138763 | Msa0735670:CDS | 35.0% | |
| CGTTCTCTTTGAATATCTTG+AGG | + | chr5_1:51138789-51138808 | Msa0735670:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_1:51138802-51138821 | Msa0735670:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_1:51138832-51138851 | Msa0735670:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_1:51139016-51139035 | Msa0735670:CDS | 35.0% | |
| ! | CTTTTATTCGAAGAACACCT+TGG | + | chr5_1:51139179-51139198 | Msa0735670:intron | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_1:51139193-51139212 | Msa0735670:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_1:51139194-51139213 | Msa0735670:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | + | chr5_1:51139403-51139422 | Msa0735670:intron | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_1:51139775-51139794 | Msa0735670:CDS | 35.0% | |
| ! | TTTCCACCCTTTTCTCTATA+AGG | + | chr5_1:51139862-51139881 | Msa0735670:CDS | 35.0% |
| ! | TTCCACCCTTTTCTCTATAA+GGG | + | chr5_1:51139863-51139882 | Msa0735670:CDS | 35.0% |
| AGTTGCCCTTATAGAGAAAA+GGG | - | chr5_1:51139871-51139890 | None:intergenic | 35.0% | |
| TAGTTGCCCTTATAGAGAAA+AGG | - | chr5_1:51139872-51139891 | None:intergenic | 35.0% | |
| ! | ATGATGGAAAATCAAAGGAG+TGG | + | chr5_1:51138737-51138756 | Msa0735670:CDS | 35.0% |
| AAAATCAAAGGAGTGGACAT+GGG | + | chr5_1:51138744-51138763 | Msa0735670:CDS | 35.0% | |
| CGTTCTCTTTGAATATCTTG+AGG | + | chr5_1:51138789-51138808 | Msa0735670:CDS | 35.0% | |
| ! | TATCTTGAGGAAGTACAAGA+AGG | + | chr5_1:51138802-51138821 | Msa0735670:CDS | 35.0% |
| ! | GAAAATCTTGCTCTTGTTTG+CGG | + | chr5_1:51138832-51138851 | Msa0735670:CDS | 35.0% |
| CTAAGAAAGTGGTGAAACAT+TGG | + | chr5_1:51139016-51139035 | Msa0735670:CDS | 35.0% | |
| ! | CTTTTATTCGAAGAACACCT+TGG | + | chr5_1:51139179-51139198 | Msa0735670:intron | 35.0% |
| !! | ACACCTTGGTTTTTCTGAAA+AGG | + | chr5_1:51139193-51139212 | Msa0735670:intron | 35.0% |
| !! | CACCTTGGTTTTTCTGAAAA+GGG | + | chr5_1:51139194-51139213 | Msa0735670:intron | 35.0% |
| !! | TCCCTGCATCATTACTTTTA+TGG | + | chr5_1:51139403-51139422 | Msa0735670:intron | 35.0% |
| CTTCAACATTACCTCATTGA+AGG | + | chr5_1:51139775-51139794 | Msa0735670:CDS | 35.0% | |
| ! | TTTCCACCCTTTTCTCTATA+AGG | + | chr5_1:51139862-51139881 | Msa0735670:CDS | 35.0% |
| ! | TTCCACCCTTTTCTCTATAA+GGG | + | chr5_1:51139863-51139882 | Msa0735670:CDS | 35.0% |
| AGTTGCCCTTATAGAGAAAA+GGG | - | chr5_1:51139871-51139890 | None:intergenic | 35.0% | |
| TAGTTGCCCTTATAGAGAAA+AGG | - | chr5_1:51139872-51139891 | None:intergenic | 35.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_1:51138743-51138762 | Msa0735670:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_1:51139034-51139053 | Msa0735670:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_1:51139199-51139218 | None:intergenic | 40.0% |
| GGGATCGAGATTCATAAGAA+GGG | + | chr5_1:51139629-51139648 | Msa0735670:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_1:51139712-51139731 | None:intergenic | 40.0% |
| ! | TTTGGAATCTCCCTTCAATG+AGG | - | chr5_1:51139789-51139808 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_1:51139802-51139821 | Msa0735670:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_1:51139812-51139831 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_1:51139845-51139864 | None:intergenic | 40.0% | |
| GAAAATCAAAGGAGTGGACA+TGG | + | chr5_1:51138743-51138762 | Msa0735670:CDS | 40.0% | |
| ATTGGAGTGAAGAAGAACAC+AGG | + | chr5_1:51139034-51139053 | Msa0735670:CDS | 40.0% | |
| ! | GTCCCTTTTCAGAAAAACCA+AGG | - | chr5_1:51139199-51139218 | None:intergenic | 40.0% |
| GGGATCGAGATTCATAAGAA+GGG | + | chr5_1:51139629-51139648 | Msa0735670:CDS | 40.0% | |
| ! | GAAGGAAATGCTTTTGAGCA+TGG | - | chr5_1:51139712-51139731 | None:intergenic | 40.0% |
| ! | TTTGGAATCTCCCTTCAATG+AGG | - | chr5_1:51139789-51139808 | None:intergenic | 40.0% |
| TTCCAAACCTCTTCTCAGTA+AGG | + | chr5_1:51139802-51139821 | Msa0735670:CDS | 40.0% | |
| ATGTTGTCCTTACTGAGAAG+AGG | - | chr5_1:51139812-51139831 | None:intergenic | 40.0% | |
| AAATTTCCATCCCATGAGGT+AGG | - | chr5_1:51139845-51139864 | None:intergenic | 40.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_1:51138809-51138828 | Msa0735670:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_1:51138810-51138829 | Msa0735670:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_1:51138897-51138916 | Msa0735670:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_1:51138901-51138920 | Msa0735670:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_1:51139138-51139157 | None:intergenic | 45.0% | |
| GGGGATCGAGATTCATAAGA+AGG | + | chr5_1:51139628-51139647 | Msa0735670:CDS | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_1:51139807-51139826 | None:intergenic | 45.0% | |
| TTCCATCTCTTCCTACCTCA+TGG | + | chr5_1:51139831-51139850 | Msa0735670:CDS | 45.0% | |
| TCCATCTCTTCCTACCTCAT+GGG | + | chr5_1:51139832-51139851 | Msa0735670:CDS | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_1:51139849-51139868 | None:intergenic | 45.0% | |
| TGCCCTTATAGAGAAAAGGG+TGG | - | chr5_1:51139868-51139887 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_1:51139899-51139918 | None:intergenic | 45.0% | |
| ! | AGGAAGTACAAGAAGGTCGA+TGG | + | chr5_1:51138809-51138828 | Msa0735670:CDS | 45.0% |
| ! | GGAAGTACAAGAAGGTCGAT+GGG | + | chr5_1:51138810-51138829 | Msa0735670:CDS | 45.0% |
| GCATGACTTAGCACTCATTG+AGG | + | chr5_1:51138897-51138916 | Msa0735670:CDS | 45.0% | |
| GACTTAGCACTCATTGAGGA+AGG | + | chr5_1:51138901-51138920 | Msa0735670:CDS | 45.0% | |
| CGGAATTCACACCATGCATA+AGG | - | chr5_1:51139138-51139157 | None:intergenic | 45.0% | |
| GGGGATCGAGATTCATAAGA+AGG | + | chr5_1:51139628-51139647 | Msa0735670:CDS | 45.0% | |
| GTCCTTACTGAGAAGAGGTT+TGG | - | chr5_1:51139807-51139826 | None:intergenic | 45.0% | |
| TTCCATCTCTTCCTACCTCA+TGG | + | chr5_1:51139831-51139850 | Msa0735670:CDS | 45.0% | |
| TCCATCTCTTCCTACCTCAT+GGG | + | chr5_1:51139832-51139851 | Msa0735670:CDS | 45.0% | |
| GTGGAAATTTCCATCCCATG+AGG | - | chr5_1:51139849-51139868 | None:intergenic | 45.0% | |
| TGCCCTTATAGAGAAAAGGG+TGG | - | chr5_1:51139868-51139887 | None:intergenic | 45.0% | |
| GGATGAGGATAAAGAAGAGC+TGG | - | chr5_1:51139899-51139918 | None:intergenic | 45.0% | |
| !!! | TATTTTAATAGAAAAAAAAA+AGG | - | chr5_1:51139364-51139383 | None:intergenic | 5.0% |
| !!! | TATTTTAATAGAAAAAAAAA+AGG | - | chr5_1:51139364-51139383 | None:intergenic | 5.0% |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_1:51139124-51139143 | Msa0735670:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_1:51139695-51139714 | None:intergenic | 50.0% |
| TCCCATGAGGTAGGAAGAGA+TGG | - | chr5_1:51139836-51139855 | None:intergenic | 50.0% | |
| TCTCTTCCTACCTCATGGGA+TGG | + | chr5_1:51139836-51139855 | Msa0735670:CDS | 50.0% | |
| TGTGGACGAGTCCTTATGCA+TGG | + | chr5_1:51139124-51139143 | Msa0735670:intron | 50.0% | |
| ! | GCATGGCTAGCACATTGACT+TGG | - | chr5_1:51139695-51139714 | None:intergenic | 50.0% |
| TCCCATGAGGTAGGAAGAGA+TGG | - | chr5_1:51139836-51139855 | None:intergenic | 50.0% | |
| TCTCTTCCTACCTCATGGGA+TGG | + | chr5_1:51139836-51139855 | Msa0735670:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 51138697 | 51139925 | 51138697 | ID=Msa0735670;Name=Msa0735670 |
| chr5_1 | mRNA | 51138697 | 51139925 | 51138697 | ID=Msa0735670-mRNA-1;Parent=Msa0735670;Name=Msa0735670-mRNA-1;_AED=0.31;_eAED=0.31;_QI=0|0|0|1|1|1|2|0|222 |
| chr5_1 | exon | 51138697 | 51139055 | 51138697 | ID=Msa0735670-mRNA-1:exon:14412;Parent=Msa0735670-mRNA-1 |
| chr5_1 | exon | 51139616 | 51139925 | 51139616 | ID=Msa0735670-mRNA-1:exon:14413;Parent=Msa0735670-mRNA-1 |
| chr5_1 | CDS | 51138697 | 51139055 | 51138697 | ID=Msa0735670-mRNA-1:cds;Parent=Msa0735670-mRNA-1 |
| chr5_1 | CDS | 51139616 | 51139925 | 51139616 | ID=Msa0735670-mRNA-1:cds;Parent=Msa0735670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
