Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736350 | XP_003616150.2 | 94.057 | 488 | 29 | 0 | 1 | 488 | 1 | 488 | 0.0 | 942 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736350 | sp|Q6NQJ8|SDG40_ARATH | 56.008 | 491 | 203 | 6 | 1 | 487 | 1 | 482 | 0.0 | 558 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736350 | G7KFS1 | 94.057 | 488 | 29 | 0 | 1 | 488 | 1 | 488 | 0.0 | 942 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0736350 | TR | SET |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736350 | MtrunA17_Chr5g0433621 | 94.057 | 488 | 29 | 0 | 1 | 488 | 1 | 488 | 0.0 | 942 |
| Msa0736350 | MtrunA17_Chr1g0188461 | 26.667 | 285 | 177 | 9 | 52 | 315 | 33 | 306 | 2.97e-14 | 75.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0736350 | AT5G17240.1 | 56.008 | 491 | 203 | 6 | 1 | 487 | 1 | 482 | 0.0 | 558 |
| Msa0736350 | AT5G17240.2 | 56.490 | 416 | 172 | 5 | 76 | 487 | 1 | 411 | 2.48e-167 | 479 |
Find 99 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTGGTTGTAATGCAAATA+AGG | 0.208773 | 5_1:+52501769 | Msa0736350:three_prime_UTR |
| GTCGGACATCTTGCATATTC+TGG | 0.229958 | 5_1:+52501363 | Msa0736350:CDS |
| CAACACTCTCTTTCCTCTCT+TGG | 0.235733 | 5_1:+52497725 | Msa0736350:CDS |
| CTCTTCTCTCTCCTCTGTTC+AGG | 0.238607 | 5_1:+52498086 | Msa0736350:CDS |
| GAAATGATGTTATGATTAAT+TGG | 0.256359 | 5_1:+52501752 | Msa0736350:exon |
| TTGTTAAACTTATGTCATTC+AGG | 0.257944 | 5_1:+52501541 | Msa0736350:CDS |
| CTATGGAACATACACAAATT+TGG | 0.272520 | 5_1:+52501146 | Msa0736350:CDS |
| CTAGTCATGAAAGCATATTT+TGG | 0.289184 | 5_1:-52498012 | None:intergenic |
| AGTTTCTTTCCATTCTGATT+TGG | 0.291774 | 5_1:-52499830 | None:intergenic |
| TAACATTTAAGGCTTGGGTC+TGG | 0.317268 | 5_1:+52499893 | Msa0736350:CDS |
| CACTTCTACTTCATGGTCTA+AGG | 0.325752 | 5_1:+52501248 | Msa0736350:CDS |
| CATGACTATAATTTCATTGT+TGG | 0.340261 | 5_1:-52501400 | None:intergenic |
| AACATTTAAGGCTTGGGTCT+GGG | 0.343281 | 5_1:+52499894 | Msa0736350:CDS |
| TTGGAGCTTCTTGAACACTA+TGG | 0.346357 | 5_1:+52501165 | Msa0736350:CDS |
| AATCGTAACTTTGCGGCAAA+TGG | 0.353382 | 5_1:-52499593 | None:intergenic |
| GGGCAACCCCTCATAATAAA+AGG | 0.361144 | 5_1:+52501334 | Msa0736350:CDS |
| CTATGTACACTTCTACTTCA+TGG | 0.363522 | 5_1:+52501241 | Msa0736350:CDS |
| GGTGGAAATTAGCCGTCTTA+TGG | 0.364443 | 5_1:+52501661 | Msa0736350:CDS |
| CAACAAGAACTCTCTTATAC+TGG | 0.372525 | 5_1:-52501689 | None:intergenic |
| GACTACACTCCAATGCATTC+AGG | 0.375734 | 5_1:-52501494 | None:intergenic |
| TACGATTTGCTAGCCATGTT+TGG | 0.389728 | 5_1:+52499609 | Msa0736350:CDS |
| TAATTAAACAAGTCACCAAC+AGG | 0.396024 | 5_1:-52500631 | None:intergenic |
| GCCTTTCTTGTAATTTGTCC+TGG | 0.398351 | 5_1:-52500815 | None:intergenic |
| GAAAGAAACTCATGCCTTGA+TGG | 0.398662 | 5_1:+52499843 | Msa0736350:CDS |
| GACTAGTGAGAGTGTTACTA+TGG | 0.399843 | 5_1:+52498029 | Msa0736350:CDS |
| CTCTTATTGCAATGGAATGT+TGG | 0.404837 | 5_1:+52501719 | Msa0736350:CDS |
| GCACCTGGAGAGGACCTATC+TGG | 0.423204 | 5_1:+52500658 | Msa0736350:CDS |
| TTCTAGCTGCGTTACGATTG+TGG | 0.436159 | 5_1:+52501313 | Msa0736350:CDS |
| AGAATGTTGCAGTAGAGGTT+TGG | 0.444175 | 5_1:+52497945 | Msa0736350:intron |
| GAATGTTGCAGTAGAGGTTT+GGG | 0.448690 | 5_1:+52497946 | Msa0736350:intron |
| ATGAAATTATAGTCATGAAA+TGG | 0.451259 | 5_1:+52501406 | Msa0736350:CDS |
| CTTGTTATACGAAGTTGGTA+AGG | 0.457725 | 5_1:+52499539 | Msa0736350:CDS |
| TCTAGCTGCGTTACGATTGT+GGG | 0.460277 | 5_1:+52501314 | Msa0736350:CDS |
| GTTTGCTTGTTATACGAAGT+TGG | 0.462021 | 5_1:+52499534 | Msa0736350:CDS |
| AGGAAAGAGAGTGTTGAGAA+TGG | 0.462418 | 5_1:-52497718 | None:intergenic |
| GAATGGTCGGTGTTTGTTGT+TGG | 0.462791 | 5_1:-52497701 | None:intergenic |
| CTACCTTTCCTCACTCTGGC+GGG | 0.467292 | 5_1:+52497765 | Msa0736350:CDS |
| GTGCTGTGAGAGATCTTAAG+AGG | 0.468743 | 5_1:+52497968 | Msa0736350:CDS |
| CACCAGGTTCTATTATGCTA+TGG | 0.472726 | 5_1:+52501129 | Msa0736350:intron |
| CTCCAATGCATTCAGGAGTA+AGG | 0.484839 | 5_1:-52501487 | None:intergenic |
| TGTTAAACTTATGTCATTCA+GGG | 0.485910 | 5_1:+52501542 | Msa0736350:CDS |
| TTGGGTCTGGGCTGCTGCAA+CGG | 0.491411 | 5_1:+52499906 | Msa0736350:CDS |
| AACTTTGCGGCAAATGGACG+AGG | 0.497147 | 5_1:-52499587 | None:intergenic |
| TGCGGCAAATGGACGAGGTA+AGG | 0.498856 | 5_1:-52499582 | None:intergenic |
| AAATGGAGACAAGAATGAAA+TGG | 0.501334 | 5_1:+52500708 | Msa0736350:CDS |
| TTGGTAAGGGAAAGACTTCA+AGG | 0.512774 | 5_1:+52499553 | Msa0736350:CDS |
| GTTTCTACCTTTCCTCACTC+TGG | 0.514945 | 5_1:+52497761 | Msa0736350:CDS |
| GCCAGGACAAATTACAAGAA+AGG | 0.522389 | 5_1:+52500814 | Msa0736350:CDS |
| GCTAGCAAATCGTAACTTTG+CGG | 0.525431 | 5_1:-52499600 | None:intergenic |
| AAGAGAGTGTTGAGAATGGT+CGG | 0.528406 | 5_1:-52497714 | None:intergenic |
| TATATTATGAGCTTCTAAGA+AGG | 0.528878 | 5_1:-52501577 | None:intergenic |
| GAAAGAGCTAGGTTAGAAGA+TGG | 0.535954 | 5_1:+52497613 | Msa0736350:exon |
| GCTGGTTGTTTATGCCCTGT+TGG | 0.537691 | 5_1:+52500616 | Msa0736350:CDS |
| TTTCTCAAATTCACCAAACA+TGG | 0.542605 | 5_1:-52499622 | None:intergenic |
| GTGCGAGTTCTGAAAGAGCT+AGG | 0.544527 | 5_1:+52497602 | Msa0736350:five_prime_UTR |
| TACCTTACTCCTGAATGCAT+TGG | 0.549106 | 5_1:+52501485 | Msa0736350:CDS |
| GAAGTAGAAGTGTACATAGC+AGG | 0.549201 | 5_1:-52501237 | None:intergenic |
| AAACATGAGTTCCTCCATCA+AGG | 0.553023 | 5_1:-52499857 | None:intergenic |
| CTCAGAGACTAACTGATGGT+GGG | 0.556902 | 5_1:+52500758 | Msa0736350:CDS |
| TTGTTTAATTACGATGCACC+TGG | 0.559289 | 5_1:+52500643 | Msa0736350:CDS |
| AAACGAGAAGGTCAATGGAT+AGG | 0.559566 | 5_1:+52501640 | Msa0736350:CDS |
| ATACCAGATAGGTCCTCTCC+AGG | 0.561435 | 5_1:-52500661 | None:intergenic |
| TCTCAGAGACTAACTGATGG+TGG | 0.562053 | 5_1:+52500757 | Msa0736350:CDS |
| AAGAACATGGAAGCTTTGAA+AGG | 0.566087 | 5_1:+52497639 | Msa0736350:CDS |
| GTGTACATAGCAGGTTCCAA+AGG | 0.569923 | 5_1:-52501228 | None:intergenic |
| TCTACCTTTCCTCACTCTGG+CGG | 0.572108 | 5_1:+52497764 | Msa0736350:CDS |
| AAATTACAAGAAAGGCGACC+AGG | 0.572285 | 5_1:+52500822 | Msa0736350:CDS |
| GAATGTATCTCTTATTGCAA+TGG | 0.572758 | 5_1:+52501711 | Msa0736350:CDS |
| CTCGGACATTGCATATACCA+TGG | 0.573706 | 5_1:+52500587 | Msa0736350:CDS |
| GGAAATTAGCCGTCTTATGG+AGG | 0.574416 | 5_1:+52501664 | Msa0736350:CDS |
| CTACGTCGTCAATACCAGAT+AGG | 0.574667 | 5_1:-52500672 | None:intergenic |
| ATCAGGTGGATGAAGCTATG+TGG | 0.575999 | 5_1:+52499782 | Msa0736350:intron |
| CGAGAAGGTCAATGGATAGG+TGG | 0.576592 | 5_1:+52501643 | Msa0736350:CDS |
| TTGTTATACGAAGTTGGTAA+GGG | 0.583923 | 5_1:+52499540 | Msa0736350:CDS |
| GCTTTGAAAGGTTCTTAACA+TGG | 0.587490 | 5_1:+52497651 | Msa0736350:CDS |
| TCAGGTGGATGAAGCTATGT+GGG | 0.588137 | 5_1:+52499783 | Msa0736350:intron |
| TCGGACATTGCATATACCAT+GGG | 0.588653 | 5_1:+52500588 | Msa0736350:CDS |
| GTATCGTCTTCAATAGATGT+TGG | 0.593968 | 5_1:-52501465 | None:intergenic |
| TAGAAGATGGAACAAGAACA+TGG | 0.594815 | 5_1:+52497626 | Msa0736350:exon |
| TAATTACGATGCACCTGGAG+AGG | 0.595408 | 5_1:+52500648 | Msa0736350:CDS |
| TGCTGTGAGAGATCTTAAGA+GGG | 0.596123 | 5_1:+52497969 | Msa0736350:CDS |
| TGTACATAGCAGGTTCCAAA+GGG | 0.596868 | 5_1:-52501227 | None:intergenic |
| CATATACCATGGGATGAAGC+TGG | 0.602506 | 5_1:+52500598 | Msa0736350:CDS |
| CATAATAAAAGGAGGTCTGT+CGG | 0.606789 | 5_1:+52501345 | Msa0736350:CDS |
| GTGAGTTACCCGCCAGAGTG+AGG | 0.607950 | 5_1:-52497773 | None:intergenic |
| AATTCTCAGAGACTAACTGA+TGG | 0.621388 | 5_1:+52500754 | Msa0736350:CDS |
| ATACTGGAGCCTCCATAAGA+CGG | 0.630129 | 5_1:-52501673 | None:intergenic |
| GCAGAGAGAATGACCAAGAG+AGG | 0.631070 | 5_1:-52497738 | None:intergenic |
| AGAAACTCATGCCTTGATGG+AGG | 0.631233 | 5_1:+52499846 | Msa0736350:CDS |
| AAACAACCAGCTTCATCCCA+TGG | 0.633574 | 5_1:-52500604 | None:intergenic |
| TTGGTGAATCTGATATTCCA+AGG | 0.633842 | 5_1:-52497682 | None:intergenic |
| GCAGCTAGAAGCGCAAACGA+AGG | 0.634016 | 5_1:-52501300 | None:intergenic |
| TTAACATGGACATCACACCT+TGG | 0.645130 | 5_1:+52497665 | Msa0736350:CDS |
| TCACTCTATATCCATCCCAA+CGG | 0.653728 | 5_1:+52501273 | Msa0736350:CDS |
| TTACCCGCCAGAGTGAGGAA+AGG | 0.662573 | 5_1:-52497768 | None:intergenic |
| CAACCCCTCATAATAAAAGG+AGG | 0.668522 | 5_1:+52501337 | Msa0736350:CDS |
| GCTGTGAGAGATCTTAAGAG+GGG | 0.713261 | 5_1:+52497970 | Msa0736350:CDS |
| AATTAAACAAGTCACCAACA+GGG | 0.716642 | 5_1:-52500630 | None:intergenic |
| GTAAGGGAAAGACTTCAAGG+TGG | 0.809146 | 5_1:+52499556 | Msa0736350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATGATAAATTTTATTCA+GGG | - | chr5_1:52500918-52500937 | None:intergenic | 10.0% |
| !!! | ATTTATGATAAATTTTATTC+AGG | - | chr5_1:52500919-52500938 | None:intergenic | 10.0% |
| !! | AACTAAATACAAAAAACTAT+TGG | - | chr5_1:52498456-52498475 | None:intergenic | 15.0% |
| !!! | ATTTAGTTTTTGAAATTGTA+AGG | + | chr5_1:52498468-52498487 | Msa0736350:intron | 15.0% |
| !!! | AATAGTTCTAACAAAAATAT+TGG | - | chr5_1:52499381-52499400 | None:intergenic | 15.0% |
| !!! | ATTTTTTAGTTTATCTCATT+AGG | + | chr5_1:52499674-52499693 | Msa0736350:intron | 15.0% |
| !! | TAACCAAAACAAAAATAAAA+GGG | - | chr5_1:52499947-52499966 | None:intergenic | 15.0% |
| !! | TTAACCAAAACAAAAATAAA+AGG | - | chr5_1:52499948-52499967 | None:intergenic | 15.0% |
| !! | TCGAATTGAAAATATTTATA+TGG | - | chr5_1:52501031-52501050 | None:intergenic | 15.0% |
| !!! | TAATTTTAATTACCTTCCAT+TGG | + | chr5_1:52499342-52499361 | Msa0736350:intron | 20.0% |
| !! | TTCTAACAAAAATATTGGAT+TGG | - | chr5_1:52499376-52499395 | None:intergenic | 20.0% |
| !!! | TATCTTAATTTGTGATTATC+AGG | + | chr5_1:52499765-52499784 | Msa0736350:intron | 20.0% |
| !! | ATGTTGTAACAAACTTATTT+CGG | + | chr5_1:52500383-52500402 | Msa0736350:intron | 20.0% |
| !!! | GTAGATAATTTTCAATCAAA+TGG | + | chr5_1:52500691-52500710 | Msa0736350:CDS | 20.0% |
| !!! | GAAATTTTAACATAACCATT+AGG | + | chr5_1:52500861-52500880 | Msa0736350:intron | 20.0% |
| !! | AATTGAATATGTAAACCTAA+TGG | - | chr5_1:52500879-52500898 | None:intergenic | 20.0% |
| !! | ATGAAATTATAGTCATGAAA+TGG | + | chr5_1:52501406-52501425 | Msa0736350:CDS | 20.0% |
| !! | GAAATGATGTTATGATTAAT+TGG | + | chr5_1:52501752-52501771 | Msa0736350:exon | 20.0% |
| !!! | GTTTTTCCTTATTTTTGTAA+GGG | + | chr5_1:52501791-52501810 | Msa0736350:three_prime_UTR | 20.0% |
| !!! | AAACTTTGCATTTGTTTTCT+TGG | + | chr5_1:52497836-52497855 | Msa0736350:intron | 25.0% |
| !!! | AACTTTGCATTTGTTTTCTT+GGG | + | chr5_1:52497837-52497856 | Msa0736350:intron | 25.0% |
| !!! | ACCATTTTGTTGTATTGTTT+TGG | + | chr5_1:52497922-52497941 | Msa0736350:intron | 25.0% |
| ! | TCCAAAACAATACAACAAAA+TGG | - | chr5_1:52497926-52497945 | None:intergenic | 25.0% |
| ! | TTCTTAACTTTACTTTAGTG+AGG | + | chr5_1:52498115-52498134 | Msa0736350:intron | 25.0% |
| ! | AATTTGATCCATGAAATAGT+AGG | + | chr5_1:52498201-52498220 | Msa0736350:intron | 25.0% |
| ! | CATTGCAAAATGTTGTTAAT+CGG | + | chr5_1:52498275-52498294 | Msa0736350:intron | 25.0% |
| !!! | AATGATTATTTTGTAACTGC+AGG | - | chr5_1:52498510-52498529 | None:intergenic | 25.0% |
| ! | ACTAAATTGACAGATCTAAA+GGG | - | chr5_1:52498561-52498580 | None:intergenic | 25.0% |
| ! | ATAAAAATAGTCCAATGTGA+TGG | + | chr5_1:52498582-52498601 | Msa0736350:intron | 25.0% |
| !!! | TGATGGATGATTTTCAATTT+AGG | + | chr5_1:52498599-52498618 | Msa0736350:intron | 25.0% |
| !! | GATGGATGATTTTCAATTTA+GGG | + | chr5_1:52498600-52498619 | Msa0736350:intron | 25.0% |
| ! | ATCTGCAATATAAAAAAGCT+CGG | - | chr5_1:52499507-52499526 | None:intergenic | 25.0% |
| !!! | AGTTTTTAACATTTAAGGCT+TGG | + | chr5_1:52499887-52499906 | Msa0736350:CDS | 25.0% |
| !!! | GTTTTTAACATTTAAGGCTT+GGG | + | chr5_1:52499888-52499907 | Msa0736350:CDS | 25.0% |
| !! | AATCCTTCACAAATTTTCTA+TGG | - | chr5_1:52500070-52500089 | None:intergenic | 25.0% |
| !!! | TGATTCATTTTTTGTGTTCT+TGG | + | chr5_1:52500434-52500453 | Msa0736350:intron | 25.0% |
| ! | CATGACTATAATTTCATTGT+TGG | - | chr5_1:52501403-52501422 | None:intergenic | 25.0% |
| ! | TTGTTAAACTTATGTCATTC+AGG | + | chr5_1:52501541-52501560 | Msa0736350:CDS | 25.0% |
| ! | TGTTAAACTTATGTCATTCA+GGG | + | chr5_1:52501542-52501561 | Msa0736350:CDS | 25.0% |
| !! | TATATTATGAGCTTCTAAGA+AGG | - | chr5_1:52501580-52501599 | None:intergenic | 25.0% |
| ! | TTTCATCTATAAAAACGAGA+AGG | + | chr5_1:52501628-52501647 | Msa0736350:CDS | 25.0% |
| ! | AATTGGTTGTAATGCAAATA+AGG | + | chr5_1:52501769-52501788 | Msa0736350:three_prime_UTR | 25.0% |
| !!! | GGTTTTTCCTTATTTTTGTA+AGG | + | chr5_1:52501790-52501809 | Msa0736350:three_prime_UTR | 25.0% |
| ! | TCATATCCCTTACAAAAATA+AGG | - | chr5_1:52501800-52501819 | None:intergenic | 25.0% |
| TTTCTTGGGTGATTAATCAA+AGG | + | chr5_1:52497851-52497870 | Msa0736350:intron | 30.0% | |
| TTCTTGGGTGATTAATCAAA+GGG | + | chr5_1:52497852-52497871 | Msa0736350:intron | 30.0% | |
| !! | CTAGTCATGAAAGCATATTT+TGG | - | chr5_1:52498015-52498034 | None:intergenic | 30.0% |
| !!! | CTTCTGTTGATGGTTTTTTT+AGG | + | chr5_1:52498143-52498162 | Msa0736350:intron | 30.0% |
| GATACATTCCTACTATTTCA+TGG | - | chr5_1:52498212-52498231 | None:intergenic | 30.0% | |
| GACTAAATTGACAGATCTAA+AGG | - | chr5_1:52498562-52498581 | None:intergenic | 30.0% | |
| TTGAAAATCATCCATCACAT+TGG | - | chr5_1:52498596-52498615 | None:intergenic | 30.0% | |
| TATGAAAACTGAACTGGTAT+GGG | - | chr5_1:52498990-52499009 | None:intergenic | 30.0% | |
| TTATGAAAACTGAACTGGTA+TGG | - | chr5_1:52498991-52499010 | None:intergenic | 30.0% | |
| TTGGTTTATGAAAACTGAAC+TGG | - | chr5_1:52498996-52499015 | None:intergenic | 30.0% | |
| !! | ATAAGTTTTGTGAGACAGTT+TGG | + | chr5_1:52499087-52499106 | Msa0736350:intron | 30.0% |
| !! | TAAGTTTTGTGAGACAGTTT+GGG | + | chr5_1:52499088-52499107 | Msa0736350:intron | 30.0% |
| !!! | GCTGTTTTAATAAGCTATCT+TGG | - | chr5_1:52499178-52499197 | None:intergenic | 30.0% |
| AATAAGTTGTTTGTCCAAAC+AGG | + | chr5_1:52499298-52499317 | Msa0736350:intron | 30.0% | |
| TGTTAGAACTATTGTATGCA+TGG | + | chr5_1:52499388-52499407 | Msa0736350:intron | 30.0% | |
| ATTGTATGCATGGTTAAACT+AGG | + | chr5_1:52499398-52499417 | Msa0736350:intron | 30.0% | |
| !! | TTGTTATACGAAGTTGGTAA+GGG | + | chr5_1:52499540-52499559 | Msa0736350:CDS | 30.0% |
| TTTCTCAAATTCACCAAACA+TGG | - | chr5_1:52499625-52499644 | None:intergenic | 30.0% | |
| TAGGTTAGATTATAGCATCT+TGG | + | chr5_1:52499693-52499712 | Msa0736350:intron | 30.0% | |
| !! | CTTAATTTGTGATTATCAGG+TGG | + | chr5_1:52499768-52499787 | Msa0736350:intron | 30.0% |
| TACAAAAAGCCAAATCAGAA+TGG | + | chr5_1:52499821-52499840 | Msa0736350:CDS | 30.0% | |
| AGTTTCTTTCCATTCTGATT+TGG | - | chr5_1:52499833-52499852 | None:intergenic | 30.0% | |
| ! | GCCTCAGTTTTTAACATTTA+AGG | + | chr5_1:52499882-52499901 | Msa0736350:CDS | 30.0% |
| GCCTTAAATGTTAAAAACTG+AGG | - | chr5_1:52499886-52499905 | None:intergenic | 30.0% | |
| CCAAAACAAAAATAAAAGGG+CGG | - | chr5_1:52499944-52499963 | None:intergenic | 30.0% | |
| TTGCCATAGAAAATTTGTGA+AGG | + | chr5_1:52500064-52500083 | Msa0736350:intron | 30.0% | |
| TAAAAGACGTCGTCAAATAA+CGG | + | chr5_1:52500227-52500246 | Msa0736350:intron | 30.0% | |
| TTAACCAATGATGTCAATCA+CGG | - | chr5_1:52500315-52500334 | None:intergenic | 30.0% | |
| ! | TGACATCATTGGTTAATGAT+AGG | + | chr5_1:52500319-52500338 | Msa0736350:intron | 30.0% |
| !! | AAATCTTTTGTTTGCCTTTC+TGG | + | chr5_1:52500349-52500368 | Msa0736350:intron | 30.0% |
| TTTACTCATGACAACTGAAA+TGG | - | chr5_1:52500505-52500524 | None:intergenic | 30.0% | |
| TCAAAAACCAGATATCTTCT+CGG | + | chr5_1:52500569-52500588 | Msa0736350:intron | 30.0% | |
| AATTAAACAAGTCACCAACA+GGG | - | chr5_1:52500633-52500652 | None:intergenic | 30.0% | |
| TAATTAAACAAGTCACCAAC+AGG | - | chr5_1:52500634-52500653 | None:intergenic | 30.0% | |
| AAATGGAGACAAGAATGAAA+TGG | + | chr5_1:52500708-52500727 | Msa0736350:CDS | 30.0% | |
| TGTAGACTATGAACTATTAC+AGG | + | chr5_1:52500988-52501007 | Msa0736350:intron | 30.0% | |
| ATTCCACCATTTAGTAGATA+GGG | + | chr5_1:52501085-52501104 | Msa0736350:intron | 30.0% | |
| ATCATTCCCTATCTACTAAA+TGG | - | chr5_1:52501094-52501113 | None:intergenic | 30.0% | |
| CTATGGAACATACACAAATT+TGG | + | chr5_1:52501146-52501165 | Msa0736350:CDS | 30.0% | |
| ! | GGGATGAAAATTTTGTCATT+TGG | - | chr5_1:52501210-52501229 | None:intergenic | 30.0% |
| ! | TGACAAAATTTTCATCCCTT+TGG | + | chr5_1:52501212-52501231 | Msa0736350:CDS | 30.0% |
| TATAAAAACGAGAAGGTCAA+TGG | + | chr5_1:52501635-52501654 | Msa0736350:CDS | 30.0% | |
| GAATGTATCTCTTATTGCAA+TGG | + | chr5_1:52501711-52501730 | Msa0736350:CDS | 30.0% | |
| TAGAAGATGGAACAAGAACA+TGG | + | chr5_1:52497626-52497645 | Msa0736350:exon | 35.0% | |
| !! | AAGAACATGGAAGCTTTGAA+AGG | + | chr5_1:52497639-52497658 | Msa0736350:CDS | 35.0% |
| !! | GCTTTGAAAGGTTCTTAACA+TGG | + | chr5_1:52497651-52497670 | Msa0736350:CDS | 35.0% |
| TTGGTGAATCTGATATTCCA+AGG | - | chr5_1:52497685-52497704 | None:intergenic | 35.0% | |
| AAGAAGAAAAACCTGAACAG+AGG | - | chr5_1:52498100-52498119 | None:intergenic | 35.0% | |
| ! | TGAGGTTTTTCTTCTGTTGA+TGG | + | chr5_1:52498133-52498152 | Msa0736350:intron | 35.0% |
| ACCTAATTAGCAGGTGATAA+TGG | + | chr5_1:52498424-52498443 | Msa0736350:intron | 35.0% | |
| TCCATTATCACCTGCTAATT+AGG | - | chr5_1:52498428-52498447 | None:intergenic | 35.0% | |
| TGTGCAATGTTAGAGACTAA+TGG | + | chr5_1:52499027-52499046 | Msa0736350:intron | 35.0% | |
| TTAGAGACTAATGGTCTGTT+TGG | + | chr5_1:52499036-52499055 | Msa0736350:intron | 35.0% | |
| TCTCACAAAACTTATGTCAG+TGG | - | chr5_1:52499082-52499101 | None:intergenic | 35.0% | |
| ATAAGCGCTCATCATGATAA+GGG | + | chr5_1:52499257-52499276 | Msa0736350:intron | 35.0% | |
| TTATTTGCAGCTTAAAGCAC+AGG | - | chr5_1:52499283-52499302 | None:intergenic | 35.0% | |
| TTTGTCCAAACAGGTCTAAA+TGG | + | chr5_1:52499307-52499326 | Msa0736350:intron | 35.0% | |
| TTGGTTCAATAACCAATGGA+AGG | - | chr5_1:52499357-52499376 | None:intergenic | 35.0% | |
| !! | TGGATTGGTTCAATAACCAA+TGG | - | chr5_1:52499361-52499380 | None:intergenic | 35.0% |
| !! | GTTTGCTTGTTATACGAAGT+TGG | + | chr5_1:52499534-52499553 | Msa0736350:CDS | 35.0% |
| !! | CTTGTTATACGAAGTTGGTA+AGG | + | chr5_1:52499539-52499558 | Msa0736350:CDS | 35.0% |
| !!! | CCGCCCTTTTATTTTTGTTT+TGG | + | chr5_1:52499941-52499960 | Msa0736350:intron | 35.0% |
| ! | TTTTACTATGCAGCGTATAG+TGG | - | chr5_1:52500212-52500231 | None:intergenic | 35.0% |
| TCACGGATAGCATAAAATAG+AGG | - | chr5_1:52500298-52500317 | None:intergenic | 35.0% | |
| TTGTTTAATTACGATGCACC+TGG | + | chr5_1:52500643-52500662 | Msa0736350:CDS | 35.0% | |
| AATTCTCAGAGACTAACTGA+TGG | + | chr5_1:52500754-52500773 | Msa0736350:CDS | 35.0% | |
| !! | ATGCATATTGCTTTTATGCC+AGG | + | chr5_1:52500797-52500816 | Msa0736350:CDS | 35.0% |
| ACAAATTGTTGCCTGTCTTA+TGG | + | chr5_1:52500964-52500983 | Msa0736350:intron | 35.0% | |
| ATAGTCTACATCCATAAGAC+AGG | - | chr5_1:52500978-52500997 | None:intergenic | 35.0% | |
| TGAAGATAGAGCGAAAACAA+TGG | - | chr5_1:52501066-52501085 | None:intergenic | 35.0% | |
| CATTCCACCATTTAGTAGAT+AGG | + | chr5_1:52501084-52501103 | Msa0736350:intron | 35.0% | |
| ATTCCCTATCTACTAAATGG+TGG | - | chr5_1:52501091-52501110 | None:intergenic | 35.0% | |
| !!! | TAAGTTACCTTGTTTTCACC+AGG | + | chr5_1:52501113-52501132 | Msa0736350:intron | 35.0% |
| AATAGAACCTGGTGAAAACA+AGG | - | chr5_1:52501123-52501142 | None:intergenic | 35.0% | |
| TTCCATAGCATAATAGAACC+TGG | - | chr5_1:52501134-52501153 | None:intergenic | 35.0% | |
| CTATGTACACTTCTACTTCA+TGG | + | chr5_1:52501241-52501260 | Msa0736350:CDS | 35.0% | |
| ! | AGACCTCCTTTTATTATGAG+GGG | - | chr5_1:52501343-52501362 | None:intergenic | 35.0% |
| ! | CAGACCTCCTTTTATTATGA+GGG | - | chr5_1:52501344-52501363 | None:intergenic | 35.0% |
| ! | ACAGACCTCCTTTTATTATG+AGG | - | chr5_1:52501345-52501364 | None:intergenic | 35.0% |
| CATAATAAAAGGAGGTCTGT+CGG | + | chr5_1:52501345-52501364 | Msa0736350:CDS | 35.0% | |
| GTATCGTCTTCAATAGATGT+TGG | - | chr5_1:52501468-52501487 | None:intergenic | 35.0% | |
| CAACAAGAACTCTCTTATAC+TGG | - | chr5_1:52501692-52501711 | None:intergenic | 35.0% | |
| CTCTTATTGCAATGGAATGT+TGG | + | chr5_1:52501719-52501738 | Msa0736350:CDS | 35.0% | |
| GAAAGAGCTAGGTTAGAAGA+TGG | + | chr5_1:52497613-52497632 | Msa0736350:exon | 40.0% | |
| TTAACATGGACATCACACCT+TGG | + | chr5_1:52497665-52497684 | Msa0736350:CDS | 40.0% | |
| !! | AAGAGAGTGTTGAGAATGGT+CGG | - | chr5_1:52497717-52497736 | None:intergenic | 40.0% |
| !! | AGGAAAGAGAGTGTTGAGAA+TGG | - | chr5_1:52497721-52497740 | None:intergenic | 40.0% |
| TTTGGAGAATGTTGCAGTAG+AGG | + | chr5_1:52497940-52497959 | Msa0736350:intron | 40.0% | |
| AGAATGTTGCAGTAGAGGTT+TGG | + | chr5_1:52497945-52497964 | Msa0736350:intron | 40.0% | |
| GAATGTTGCAGTAGAGGTTT+GGG | + | chr5_1:52497946-52497965 | Msa0736350:intron | 40.0% | |
| TGCTGTGAGAGATCTTAAGA+GGG | + | chr5_1:52497969-52497988 | Msa0736350:CDS | 40.0% | |
| !! | GACTAGTGAGAGTGTTACTA+TGG | + | chr5_1:52498029-52498048 | Msa0736350:CDS | 40.0% |
| ! | AATCGGATTTGTTCCTCTGT+TGG | + | chr5_1:52498292-52498311 | Msa0736350:intron | 40.0% |
| AACAGAGTCTGATCAAGAGA+CGG | + | chr5_1:52498401-52498420 | Msa0736350:intron | 40.0% | |
| TGGTTTGAGTGTTCAAGTCA+TGG | - | chr5_1:52498763-52498782 | None:intergenic | 40.0% | |
| AGTCAGTCCAGTCAAGATAT+AGG | + | chr5_1:52498803-52498822 | Msa0736350:intron | 40.0% | |
| GTCAGTCCAGTCAAGATATA+GGG | + | chr5_1:52498804-52498823 | Msa0736350:intron | 40.0% | |
| TCAAGATATAGGGAGCCAAA+TGG | + | chr5_1:52498814-52498833 | Msa0736350:intron | 40.0% | |
| ATATAGGGAGCCAAATGGTA+TGG | + | chr5_1:52498819-52498838 | Msa0736350:intron | 40.0% | |
| GTATAGACGACCATACCATT+TGG | - | chr5_1:52498832-52498851 | None:intergenic | 40.0% | |
| TTAACAGACTTGACGTTTGG+TGG | - | chr5_1:52498866-52498885 | None:intergenic | 40.0% | |
| ACCAAACGTCAAGTCTGTTA+AGG | + | chr5_1:52498865-52498884 | Msa0736350:intron | 40.0% | |
| ACAAACGTCTACACCTTAAC+AGG | - | chr5_1:52498952-52498971 | None:intergenic | 40.0% | |
| ATTGCACACTTCAGGCAATT+TGG | - | chr5_1:52499015-52499034 | None:intergenic | 40.0% | |
| TCTCTAACATTGCACACTTC+AGG | - | chr5_1:52499023-52499042 | None:intergenic | 40.0% | |
| GACTAATGGTCTGTTTGGAT+TGG | + | chr5_1:52499041-52499060 | Msa0736350:intron | 40.0% | |
| CATAAGCGCTCATCATGATA+AGG | + | chr5_1:52499256-52499275 | Msa0736350:intron | 40.0% | |
| CTTGACCATTTAGACCTGTT+TGG | - | chr5_1:52499315-52499334 | None:intergenic | 40.0% | |
| ATGAAACCAAATCGACAGGT+GGG | - | chr5_1:52499431-52499450 | None:intergenic | 40.0% | |
| AGTGATGAAACCAAATCGAC+AGG | - | chr5_1:52499435-52499454 | None:intergenic | 40.0% | |
| TTGGTAAGGGAAAGACTTCA+AGG | + | chr5_1:52499553-52499572 | Msa0736350:CDS | 40.0% | |
| AATCGTAACTTTGCGGCAAA+TGG | - | chr5_1:52499596-52499615 | None:intergenic | 40.0% | |
| GCTAGCAAATCGTAACTTTG+CGG | - | chr5_1:52499603-52499622 | None:intergenic | 40.0% | |
| !! | TACGATTTGCTAGCCATGTT+TGG | + | chr5_1:52499609-52499628 | Msa0736350:CDS | 40.0% |
| GAAAGAAACTCATGCCTTGA+TGG | + | chr5_1:52499843-52499862 | Msa0736350:CDS | 40.0% | |
| AAACATGAGTTCCTCCATCA+AGG | - | chr5_1:52499860-52499879 | None:intergenic | 40.0% | |
| ! | TAACATTTAAGGCTTGGGTC+TGG | + | chr5_1:52499893-52499912 | Msa0736350:CDS | 40.0% |
| ! | AACATTTAAGGCTTGGGTCT+GGG | + | chr5_1:52499894-52499913 | Msa0736350:CDS | 40.0% |
| AGCTTAGCAGTGTGGTTAAA+TGG | + | chr5_1:52499994-52500013 | Msa0736350:intron | 40.0% | |
| TTAGCAGTGTGGTTAAATGG+TGG | + | chr5_1:52499997-52500016 | Msa0736350:intron | 40.0% | |
| !! | TCGTCAAATAACGGATAGAG+CGG | + | chr5_1:52500236-52500255 | Msa0736350:intron | 40.0% |
| CTATCCGTGATTGACATCAT+TGG | + | chr5_1:52500308-52500327 | Msa0736350:intron | 40.0% | |
| ! | TTGTTTGCCTTTCTGGTACT+TGG | + | chr5_1:52500356-52500375 | Msa0736350:intron | 40.0% |
| CATTGATCCAAGTACCAGAA+AGG | - | chr5_1:52500366-52500385 | None:intergenic | 40.0% | |
| GACAAGTAATGCGCATGAAA+AGG | - | chr5_1:52500471-52500490 | None:intergenic | 40.0% | |
| TCGGACATTGCATATACCAT+GGG | + | chr5_1:52500588-52500607 | Msa0736350:CDS | 40.0% | |
| GCCAGGACAAATTACAAGAA+AGG | + | chr5_1:52500814-52500833 | Msa0736350:CDS | 40.0% | |
| ! | GCCTTTCTTGTAATTTGTCC+TGG | - | chr5_1:52500818-52500837 | None:intergenic | 40.0% |
| AAATTACAAGAAAGGCGACC+AGG | + | chr5_1:52500822-52500841 | Msa0736350:CDS | 40.0% | |
| ! | GACAGGCAACAATTTGTTTC+TGG | - | chr5_1:52500961-52500980 | None:intergenic | 40.0% |
| CACCAGGTTCTATTATGCTA+TGG | + | chr5_1:52501129-52501148 | Msa0736350:intron | 40.0% | |
| TTGGAGCTTCTTGAACACTA+TGG | + | chr5_1:52501165-52501184 | Msa0736350:CDS | 40.0% | |
| TGTACATAGCAGGTTCCAAA+GGG | - | chr5_1:52501230-52501249 | None:intergenic | 40.0% | |
| ! | GAAGTAGAAGTGTACATAGC+AGG | - | chr5_1:52501240-52501259 | None:intergenic | 40.0% |
| CACTTCTACTTCATGGTCTA+AGG | + | chr5_1:52501248-52501267 | Msa0736350:CDS | 40.0% | |
| TCACTCTATATCCATCCCAA+CGG | + | chr5_1:52501273-52501292 | Msa0736350:CDS | 40.0% | |
| CAACCCCTCATAATAAAAGG+AGG | + | chr5_1:52501337-52501356 | Msa0736350:CDS | 40.0% | |
| TACCTTACTCCTGAATGCAT+TGG | + | chr5_1:52501485-52501504 | Msa0736350:CDS | 40.0% | |
| AAACGAGAAGGTCAATGGAT+AGG | + | chr5_1:52501640-52501659 | Msa0736350:CDS | 40.0% | |
| !! | GAATGGTCGGTGTTTGTTGT+TGG | - | chr5_1:52497704-52497723 | None:intergenic | 45.0% |
| CAACACTCTCTTTCCTCTCT+TGG | + | chr5_1:52497725-52497744 | Msa0736350:CDS | 45.0% | |
| GTTTCTACCTTTCCTCACTC+TGG | + | chr5_1:52497761-52497780 | Msa0736350:CDS | 45.0% | |
| GTGCTGTGAGAGATCTTAAG+AGG | + | chr5_1:52497968-52497987 | Msa0736350:CDS | 45.0% | |
| GCTGTGAGAGATCTTAAGAG+GGG | + | chr5_1:52497970-52497989 | Msa0736350:CDS | 45.0% | |
| GTTCCTCTGTTGGTATTCGT+AGG | + | chr5_1:52498302-52498321 | Msa0736350:intron | 45.0% | |
| GTTCCTACGAATACCAACAG+AGG | - | chr5_1:52498308-52498327 | None:intergenic | 45.0% | |
| AAGAGACGGACCTAATTAGC+AGG | + | chr5_1:52498415-52498434 | Msa0736350:intron | 45.0% | |
| ATTGTAAGGAGCAGACGATC+TGG | + | chr5_1:52498482-52498501 | Msa0736350:intron | 45.0% | |
| ATCTAAAGGGACTAGAGCGA+TGG | - | chr5_1:52498548-52498567 | None:intergenic | 45.0% | |
| TGAAAGCCAAGCTATTGCTG+AGG | + | chr5_1:52498710-52498729 | Msa0736350:intron | 45.0% | |
| TTGCTGAGGCTGGACTTTAT+TGG | + | chr5_1:52498724-52498743 | Msa0736350:intron | 45.0% | |
| TTGGCTCCCTATATCTTGAC+TGG | - | chr5_1:52498813-52498832 | None:intergenic | 45.0% | |
| !! | ACTTGACGTTTGGTGGATTG+TGG | - | chr5_1:52498859-52498878 | None:intergenic | 45.0% |
| GCCTTAACAGACTTGACGTT+TGG | - | chr5_1:52498869-52498888 | None:intergenic | 45.0% | |
| !! | GGTGGACTGTAAACTGGTAT+GGG | - | chr5_1:52498919-52498938 | None:intergenic | 45.0% |
| !! | TGGTGGACTGTAAACTGGTA+TGG | - | chr5_1:52498920-52498939 | None:intergenic | 45.0% |
| !! | ACGTTTGGTGGACTGTAAAC+TGG | - | chr5_1:52498925-52498944 | None:intergenic | 45.0% |
| TTAACAGGCTTGACGTTTGG+TGG | - | chr5_1:52498937-52498956 | None:intergenic | 45.0% | |
| ACCAAACGTCAAGCCTGTTA+AGG | + | chr5_1:52498936-52498955 | Msa0736350:intron | 45.0% | |
| ACCTTAACAGGCTTGACGTT+TGG | - | chr5_1:52498940-52498959 | None:intergenic | 45.0% | |
| GATGAAACCAAATCGACAGG+TGG | - | chr5_1:52499432-52499451 | None:intergenic | 45.0% | |
| GTAAGGGAAAGACTTCAAGG+TGG | + | chr5_1:52499556-52499575 | Msa0736350:CDS | 45.0% | |
| ATCAGGTGGATGAAGCTATG+TGG | + | chr5_1:52499782-52499801 | Msa0736350:intron | 45.0% | |
| TCAGGTGGATGAAGCTATGT+GGG | + | chr5_1:52499783-52499802 | Msa0736350:intron | 45.0% | |
| AGAAACTCATGCCTTGATGG+AGG | + | chr5_1:52499846-52499865 | Msa0736350:CDS | 45.0% | |
| GTTGCTATAGCTTAGCAGTG+TGG | + | chr5_1:52499986-52500005 | Msa0736350:intron | 45.0% | |
| GTGTGGTTAAATGGTGGTCA+TGG | + | chr5_1:52500003-52500022 | Msa0736350:intron | 45.0% | |
| GCCATATAAACACGCCATTG+CGG | - | chr5_1:52500116-52500135 | None:intergenic | 45.0% | |
| CACTACAATGTTGTCGACGA+CGG | - | chr5_1:52500160-52500179 | None:intergenic | 45.0% | |
| GCAATGTCCGAGAAGATATC+TGG | - | chr5_1:52500579-52500598 | None:intergenic | 45.0% | |
| CTCGGACATTGCATATACCA+TGG | + | chr5_1:52500587-52500606 | Msa0736350:CDS | 45.0% | |
| CATATACCATGGGATGAAGC+TGG | + | chr5_1:52500598-52500617 | Msa0736350:CDS | 45.0% | |
| AAACAACCAGCTTCATCCCA+TGG | - | chr5_1:52500607-52500626 | None:intergenic | 45.0% | |
| TAATTACGATGCACCTGGAG+AGG | + | chr5_1:52500648-52500667 | Msa0736350:CDS | 45.0% | |
| CTACGTCGTCAATACCAGAT+AGG | - | chr5_1:52500675-52500694 | None:intergenic | 45.0% | |
| TCTCAGAGACTAACTGATGG+TGG | + | chr5_1:52500757-52500776 | Msa0736350:CDS | 45.0% | |
| CTCAGAGACTAACTGATGGT+GGG | + | chr5_1:52500758-52500777 | Msa0736350:CDS | 45.0% | |
| GTGTACATAGCAGGTTCCAA+AGG | - | chr5_1:52501231-52501250 | None:intergenic | 45.0% | |
| ! | GCAAACGAAGGTTTTCCGTT+GGG | - | chr5_1:52501291-52501310 | None:intergenic | 45.0% |
| ! | TTCTAGCTGCGTTACGATTG+TGG | + | chr5_1:52501313-52501332 | Msa0736350:CDS | 45.0% |
| TCTAGCTGCGTTACGATTGT+GGG | + | chr5_1:52501314-52501333 | Msa0736350:CDS | 45.0% | |
| GGGCAACCCCTCATAATAAA+AGG | + | chr5_1:52501334-52501353 | Msa0736350:CDS | 45.0% | |
| GTCGGACATCTTGCATATTC+TGG | + | chr5_1:52501363-52501382 | Msa0736350:CDS | 45.0% | |
| CTCCAATGCATTCAGGAGTA+AGG | - | chr5_1:52501490-52501509 | None:intergenic | 45.0% | |
| GACTACACTCCAATGCATTC+AGG | - | chr5_1:52501497-52501516 | None:intergenic | 45.0% | |
| GGTGGAAATTAGCCGTCTTA+TGG | + | chr5_1:52501661-52501680 | Msa0736350:CDS | 45.0% | |
| GGAAATTAGCCGTCTTATGG+AGG | + | chr5_1:52501664-52501683 | Msa0736350:CDS | 45.0% | |
| ATACTGGAGCCTCCATAAGA+CGG | - | chr5_1:52501676-52501695 | None:intergenic | 45.0% | |
| !! | GTGCGAGTTCTGAAAGAGCT+AGG | + | chr5_1:52497602-52497621 | Msa0736350:five_prime_UTR | 50.0% |
| GCAGAGAGAATGACCAAGAG+AGG | - | chr5_1:52497741-52497760 | None:intergenic | 50.0% | |
| TCTACCTTTCCTCACTCTGG+CGG | + | chr5_1:52497764-52497783 | Msa0736350:CDS | 50.0% | |
| CTCTTCTCTCTCCTCTGTTC+AGG | + | chr5_1:52498086-52498105 | Msa0736350:CDS | 50.0% | |
| ! | CTGATTTGCACAGCCCAGTT+GGG | + | chr5_1:52498660-52498679 | Msa0736350:intron | 50.0% |
| ! | TGATTTGCACAGCCCAGTTG+GGG | + | chr5_1:52498661-52498680 | Msa0736350:intron | 50.0% |
| AGGCTGGACTTTATTGGACG+AGG | + | chr5_1:52498730-52498749 | Msa0736350:intron | 50.0% | |
| ! | CACTCAAACCAGTGCTGAGT+TGG | + | chr5_1:52498772-52498791 | Msa0736350:intron | 50.0% |
| AGCAAGATCCAACTCAGCAC+TGG | - | chr5_1:52498783-52498802 | None:intergenic | 50.0% | |
| !! | ACGTTTGGTGGATTGTGGTC+TGG | - | chr5_1:52498854-52498873 | None:intergenic | 50.0% |
| ! | ATTACGCCCACCTGTCGATT+TGG | + | chr5_1:52499422-52499441 | Msa0736350:intron | 50.0% |
| AACTTTGCGGCAAATGGACG+AGG | - | chr5_1:52499590-52499609 | None:intergenic | 50.0% | |
| TTGTGAAGGATTGCCTGCCA+TGG | + | chr5_1:52500078-52500097 | Msa0736350:intron | 50.0% | |
| GCCGCAATGGCGTGTTTATA+TGG | + | chr5_1:52500112-52500131 | Msa0736350:intron | 50.0% | |
| AATGTTGTCGACGACGGATG+GGG | - | chr5_1:52500154-52500173 | None:intergenic | 50.0% | |
| CAATGTTGTCGACGACGGAT+GGG | - | chr5_1:52500155-52500174 | None:intergenic | 50.0% | |
| ACAATGTTGTCGACGACGGA+TGG | - | chr5_1:52500156-52500175 | None:intergenic | 50.0% | |
| GCTATAGCACTGTAGCGTAG+AGG | + | chr5_1:52500260-52500279 | Msa0736350:intron | 50.0% | |
| GCTGGTTGTTTATGCCCTGT+TGG | + | chr5_1:52500616-52500635 | Msa0736350:CDS | 50.0% | |
| ATACCAGATAGGTCCTCTCC+AGG | - | chr5_1:52500664-52500683 | None:intergenic | 50.0% | |
| ACCAGGTAGTGCACAACTCT+TGG | + | chr5_1:52500839-52500858 | Msa0736350:intron | 50.0% | |
| TCCAAGAGTTGTGCACTACC+TGG | - | chr5_1:52500843-52500862 | None:intergenic | 50.0% | |
| ! | ACGAAGGTTTTCCGTTGGGA+TGG | - | chr5_1:52501287-52501306 | None:intergenic | 50.0% |
| ! | CGCAAACGAAGGTTTTCCGT+TGG | - | chr5_1:52501292-52501311 | None:intergenic | 50.0% |
| CGAGAAGGTCAATGGATAGG+TGG | + | chr5_1:52501643-52501662 | Msa0736350:CDS | 50.0% | |
| CTACCTTTCCTCACTCTGGC+GGG | + | chr5_1:52497765-52497784 | Msa0736350:CDS | 55.0% | |
| TTACCCGCCAGAGTGAGGAA+AGG | - | chr5_1:52497771-52497790 | None:intergenic | 55.0% | |
| !! | GCTGATTTGCACAGCCCAGT+TGG | + | chr5_1:52498659-52498678 | Msa0736350:intron | 55.0% |
| GATTTGCACAGCCCAGTTGG+GGG | + | chr5_1:52498662-52498681 | Msa0736350:intron | 55.0% | |
| AGCCAAGCTATTGCTGAGGC+TGG | + | chr5_1:52498714-52498733 | Msa0736350:intron | 55.0% | |
| GTCCAGCCTCAGCAATAGCT+TGG | - | chr5_1:52498719-52498738 | None:intergenic | 55.0% | |
| TGCGGCAAATGGACGAGGTA+AGG | - | chr5_1:52499585-52499604 | None:intergenic | 55.0% | |
| ATTTGCCACGCCATCCTCCA+TGG | - | chr5_1:52500034-52500053 | None:intergenic | 55.0% | |
| TGAAGGATTGCCTGCCATGG+AGG | + | chr5_1:52500081-52500100 | Msa0736350:intron | 55.0% | |
| ATGTTGTCGACGACGGATGG+GGG | - | chr5_1:52500153-52500172 | None:intergenic | 55.0% | |
| ! | GCAGCTAGAAGCGCAAACGA+AGG | - | chr5_1:52501303-52501322 | None:intergenic | 55.0% |
| GTGAGTTACCCGCCAGAGTG+AGG | - | chr5_1:52497776-52497795 | None:intergenic | 60.0% | |
| TTGGGTCTGGGCTGCTGCAA+CGG | + | chr5_1:52499906-52499925 | Msa0736350:CDS | 60.0% | |
| AAACACGCCATTGCGGCCCA+TGG | - | chr5_1:52500109-52500128 | None:intergenic | 60.0% | |
| GCACCTGGAGAGGACCTATC+TGG | + | chr5_1:52500658-52500677 | Msa0736350:CDS | 60.0% | |
| TGCCAAGCGTGCCCCCAACT+GGG | - | chr5_1:52498676-52498695 | None:intergenic | 65.0% | |
| ATGCCAAGCGTGCCCCCAAC+TGG | - | chr5_1:52498677-52498696 | None:intergenic | 65.0% | |
| ! | AGTTGGGGGCACGCTTGGCA+TGG | + | chr5_1:52498676-52498695 | Msa0736350:intron | 65.0% |
| !! | TGGTGGTCATGGTGCCGCCA+TGG | + | chr5_1:52500014-52500033 | Msa0736350:intron | 65.0% |
| !! | TGGTCATGGTGCCGCCATGG+AGG | + | chr5_1:52500017-52500036 | Msa0736350:intron | 65.0% |
| !! | CATGGTGCCGCCATGGAGGA+TGG | + | chr5_1:52500021-52500040 | Msa0736350:intron | 65.0% |
| TGCCACGCCATCCTCCATGG+CGG | - | chr5_1:52500031-52500050 | None:intergenic | 65.0% | |
| TGCCTGCCATGGAGGCTCCA+TGG | + | chr5_1:52500089-52500108 | Msa0736350:intron | 65.0% | |
| GCCTGCCATGGAGGCTCCAT+GGG | + | chr5_1:52500090-52500109 | Msa0736350:intron | 65.0% | |
| ! | AGCCCAGTTGGGGGCACGCT+TGG | + | chr5_1:52498671-52498690 | Msa0736350:intron | 70.0% |
| ! | GGGGGCACGCTTGGCATGGT+TGG | + | chr5_1:52498680-52498699 | Msa0736350:intron | 70.0% |
| TGCCGCCATGGAGGATGGCG+TGG | + | chr5_1:52500026-52500045 | Msa0736350:intron | 70.0% | |
| GCCCATGGAGCCTCCATGGC+AGG | - | chr5_1:52500094-52500113 | None:intergenic | 70.0% | |
| TGCGGCCCATGGAGCCTCCA+TGG | - | chr5_1:52500098-52500117 | None:intergenic | 70.0% | |
| GGAGGCTCCATGGGCCGCAA+TGG | + | chr5_1:52500099-52500118 | Msa0736350:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 52497582 | 52501825 | 52497582 | ID=Msa0736350;Name=Msa0736350 |
| chr5_1 | mRNA | 52497582 | 52501825 | 52497582 | ID=Msa0736350-mRNA-1;Parent=Msa0736350;Name=Msa0736350-mRNA-1;_AED=0.10;_eAED=0.10;_QI=50|1|1|1|1|1|6|67|488 |
| chr5_1 | exon | 52497582 | 52497786 | 52497582 | ID=Msa0736350-mRNA-1:exon:14817;Parent=Msa0736350-mRNA-1 |
| chr5_1 | exon | 52497957 | 52498107 | 52497957 | ID=Msa0736350-mRNA-1:exon:14818;Parent=Msa0736350-mRNA-1 |
| chr5_1 | exon | 52499525 | 52499656 | 52499525 | ID=Msa0736350-mRNA-1:exon:14819;Parent=Msa0736350-mRNA-1 |
| chr5_1 | exon | 52499787 | 52499927 | 52499787 | ID=Msa0736350-mRNA-1:exon:14820;Parent=Msa0736350-mRNA-1 |
| chr5_1 | exon | 52500580 | 52500843 | 52500580 | ID=Msa0736350-mRNA-1:exon:14821;Parent=Msa0736350-mRNA-1 |
| chr5_1 | exon | 52501135 | 52501825 | 52501135 | ID=Msa0736350-mRNA-1:exon:14822;Parent=Msa0736350-mRNA-1 |
| chr5_1 | five_prime_UTR | 52497582 | 52497631 | 52497582 | ID=Msa0736350-mRNA-1:five_prime_utr;Parent=Msa0736350-mRNA-1 |
| chr5_1 | CDS | 52497632 | 52497786 | 52497632 | ID=Msa0736350-mRNA-1:cds;Parent=Msa0736350-mRNA-1 |
| chr5_1 | CDS | 52497957 | 52498107 | 52497957 | ID=Msa0736350-mRNA-1:cds;Parent=Msa0736350-mRNA-1 |
| chr5_1 | CDS | 52499525 | 52499656 | 52499525 | ID=Msa0736350-mRNA-1:cds;Parent=Msa0736350-mRNA-1 |
| chr5_1 | CDS | 52499787 | 52499927 | 52499787 | ID=Msa0736350-mRNA-1:cds;Parent=Msa0736350-mRNA-1 |
| chr5_1 | CDS | 52500580 | 52500843 | 52500580 | ID=Msa0736350-mRNA-1:cds;Parent=Msa0736350-mRNA-1 |
| chr5_1 | CDS | 52501135 | 52501758 | 52501135 | ID=Msa0736350-mRNA-1:cds;Parent=Msa0736350-mRNA-1 |
| chr5_1 | three_prime_UTR | 52501759 | 52501825 | 52501759 | ID=Msa0736350-mRNA-1:three_prime_utr;Parent=Msa0736350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
