AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0737220

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737220 MtrunA17_Chr7g0220341 59.574 235 49 4 1 191 19 251 2.43e-89 263
Msa0737220 MtrunA17_Chr8g0360111 57.522 226 64 4 1 198 19 240 1.37e-72 220
Msa0737220 MtrunA17_Chr5g0434931 52.301 239 71 5 1 198 29 265 4.06e-70 214
Msa0737220 MtrunA17_Chr7g0228991 52.119 236 68 5 1 195 23 254 4.12e-68 209
Msa0737220 MtrunA17_Chr7g0229101 64.072 167 49 3 40 198 28 191 3.13e-59 184
Msa0737220 MtrunA17_Chr5g0434911 50.893 224 67 5 5 190 19 237 6.55e-56 178
Msa0737220 MtrunA17_Chr5g0434841 43.636 275 76 7 1 197 14 287 8.32e-53 171
Msa0737220 MtrunA17_Chr5g0434831 51.309 191 65 4 1 163 1 191 7.84e-51 162
Msa0737220 MtrunA17_Chr5g0434891 55.128 156 40 3 49 191 1 139 6.58e-49 156
Msa0737220 MtrunA17_Chr7g0229131 50.000 132 51 3 40 162 28 153 1.77e-34 120
Msa0737220 MtrunA17_Chr4g0070641 42.553 141 58 1 4 121 9 149 6.64e-31 110
Msa0737220 MtrunA17_Chr4g0070611 42.553 141 58 1 4 121 9 149 7.20e-31 114
Msa0737220 MtrunA17_Chr3g0121241 47.368 114 37 1 4 94 39 152 1.44e-30 113
Msa0737220 MtrunA17_Chr7g0240821 38.065 155 68 3 11 142 5 154 2.22e-29 108
Msa0737220 MtrunA17_Chr8g0346561 44.094 127 42 2 4 101 9 135 4.54e-29 109
Msa0737220 MtrunA17_Chr7g0275911 47.706 109 34 1 3 88 8 116 3.45e-28 106
Msa0737220 MtrunA17_Chr5g0434901 63.636 88 31 1 40 127 29 115 8.88e-27 99.0
Msa0737220 MtrunA17_Chr5g0434871 82.857 70 12 0 46 115 2 71 1.14e-26 97.1
Msa0737220 MtrunA17_Chr7g0217221 45.872 109 36 1 3 88 8 116 4.36e-26 101
Msa0737220 MtrunA17_Chr4g0037141 34.416 154 63 2 9 139 14 152 1.11e-25 100
Msa0737220 MtrunA17_Chr3g0131121 39.850 133 57 1 4 113 9 141 2.54e-25 99.8
Msa0737220 MtrunA17_Chr5g0435101 41.880 117 45 1 3 96 7 123 2.90e-25 97.4
Msa0737220 MtrunA17_Chr7g0274581 42.593 108 39 1 4 88 9 116 3.59e-25 97.1
Msa0737220 MtrunA17_Chr1g0167661 42.202 109 40 2 4 89 9 117 1.01e-24 97.1
Msa0737220 MtrunA17_Chr3g0092401 43.802 121 43 2 4 99 10 130 1.37e-24 97.8
Msa0737220 MtrunA17_Chr4g0044421 43.243 111 40 1 9 96 14 124 2.58e-24 94.7
Msa0737220 MtrunA17_Chr1g0187761 38.889 126 54 1 4 106 9 134 2.64e-24 96.3
Msa0737220 MtrunA17_Chr4g0048511 39.655 116 47 1 2 94 8 123 3.45e-24 97.4
Msa0737220 MtrunA17_Chr8g0343831 46.667 105 33 1 7 88 8 112 3.73e-24 95.5
Msa0737220 MtrunA17_Chr2g0281071 39.655 116 47 1 2 94 8 123 5.07e-24 97.1
Msa0737220 MtrunA17_Chr4g0068061 40.496 121 49 1 4 101 9 129 5.21e-24 96.7
Msa0737220 MtrunA17_Chr1g0167691 40.367 109 42 1 4 89 9 117 6.49e-24 95.1
Msa0737220 MtrunA17_Chr2g0323411 40.000 115 46 1 3 94 8 122 7.41e-24 96.3
Msa0737220 MtrunA17_Chr1g0203411 43.103 116 43 1 4 96 9 124 7.78e-24 95.5
Msa0737220 MtrunA17_Chr4g0042671 41.228 114 44 1 4 94 9 122 2.57e-23 95.9
Msa0737220 MtrunA17_Chr5g0434861 55.172 87 28 2 121 197 14 99 3.04e-23 89.7
Msa0737220 MtrunA17_Chr4g0060721 42.593 108 39 1 4 88 10 117 3.58e-23 94.4
Msa0737220 MtrunA17_Chr7g0261281 41.379 116 45 1 4 96 9 124 4.21e-23 93.2
Msa0737220 MtrunA17_Chr5g0410961 40.833 120 47 2 6 102 11 129 6.03e-23 94.0
Msa0737220 MtrunA17_Chr7g0254411 43.519 108 38 1 4 88 9 116 1.19e-22 93.2
Msa0737220 MtrunA17_Chr5g0395281 36.522 115 50 1 3 94 8 122 1.40e-22 92.4
Msa0737220 MtrunA17_Chr4g0022901 36.806 144 63 3 2 122 8 146 2.19e-22 91.3
Msa0737220 MtrunA17_Chr4g0039971 38.261 115 48 1 3 94 9 123 2.43e-22 92.4
Msa0737220 MtrunA17_Chr4g0022931 39.200 125 53 1 2 103 8 132 3.25e-22 90.9
Msa0737220 MtrunA17_Chr4g0022911 37.778 135 60 2 6 117 12 145 3.28e-22 91.3
Msa0737220 MtrunA17_Chr7g0217741 39.474 114 46 1 4 94 9 122 3.91e-22 91.3
Msa0737220 MtrunA17_Chr4g0055981 39.695 131 55 2 4 111 52 181 4.15e-22 89.7
Msa0737220 MtrunA17_Chr6g0453211 44.231 104 35 1 3 83 8 111 4.41e-22 91.3
Msa0737220 MtrunA17_Chr6g0452271 40.000 115 46 1 3 94 8 122 8.36e-22 90.9
Msa0737220 MtrunA17_Chr3g0103281 32.911 158 78 3 4 138 9 161 8.91e-22 90.5
Msa0737220 MtrunA17_Chr3g0115821 38.182 110 45 1 3 89 8 117 1.04e-21 90.9
Msa0737220 MtrunA17_Chr8g0349261 30.882 204 95 7 2 173 8 197 1.62e-21 89.4
Msa0737220 MtrunA17_Chr1g0194951 41.071 112 43 2 4 92 9 120 1.66e-21 90.5
Msa0737220 MtrunA17_Chr4g0057031 40.000 115 46 1 3 94 8 122 1.80e-21 89.0
Msa0737220 MtrunA17_Chr6g0453471 39.130 115 47 1 3 94 8 122 4.57e-21 89.0
Msa0737220 MtrunA17_Chr1g0211161 30.120 166 78 2 4 131 10 175 2.18e-20 85.1
Msa0737220 MtrunA17_Chr5g0400821 32.692 208 93 7 3 171 8 207 3.02e-20 86.3
Msa0737220 MtrunA17_Chr2g0330041 34.839 155 71 3 3 133 8 156 6.17e-20 86.3
Msa0737220 MtrunA17_Chr1g0151941 37.069 116 49 2 3 94 8 123 1.01e-19 84.0
Msa0737220 MtrunA17_Chr8g0385321 36.842 114 49 1 4 94 9 122 1.49e-19 84.3
Msa0737220 MtrunA17_Chr2g0323351 36.154 130 55 2 3 109 8 132 1.65e-19 83.2
Msa0737220 MtrunA17_Chr8g0342541 36.842 114 49 1 3 93 8 121 1.84e-19 84.7
Msa0737220 MtrunA17_Chr3g0117091 33.000 200 87 6 4 160 9 204 1.85e-19 84.7
Msa0737220 MtrunA17_Chr3g0135311 35.659 129 52 3 3 107 8 129 2.16e-19 84.3
Msa0737220 MtrunA17_Chr7g0270891 37.719 114 48 1 4 94 9 122 2.30e-19 84.3
Msa0737220 MtrunA17_Chr4g0058631 35.965 114 50 1 4 94 9 122 2.43e-19 84.3
Msa0737220 MtrunA17_Chr1g0152011 33.582 134 64 3 3 112 8 140 2.77e-19 84.0
Msa0737220 MtrunA17_Chr1g0209661 36.522 115 50 1 7 98 27 141 3.56e-19 83.2
Msa0737220 MtrunA17_Chr1g0194291 38.843 121 51 1 2 99 16 136 3.84e-19 82.4
Msa0737220 MtrunA17_Chr1g0186061 40.777 103 38 1 8 87 21 123 4.06e-19 82.4
Msa0737220 MtrunA17_Chr8g0342521 35.965 114 50 1 3 93 8 121 4.53e-19 83.6
Msa0737220 MtrunA17_Chr5g0417821 35.897 117 52 1 1 94 1 117 6.70e-19 82.4
Msa0737220 MtrunA17_Chr1g0193371 37.069 116 50 1 4 96 9 124 8.85e-19 82.8
Msa0737220 MtrunA17_Chr7g0269831 42.727 110 40 2 4 90 9 118 9.56e-19 82.8
Msa0737220 MtrunA17_Chr1g0168661 41.346 104 38 1 8 88 22 125 9.80e-19 81.3
Msa0737220 MtrunA17_Chr1g0193801 35.965 114 50 1 4 94 9 122 1.26e-18 82.4
Msa0737220 MtrunA17_Chr3g0080861 37.143 105 43 1 7 88 37 141 1.67e-18 82.8
Msa0737220 MtrunA17_Chr1g0154031 40.385 104 39 2 7 87 76 179 2.12e-18 82.0
Msa0737220 MtrunA17_Chr3g0110351 39.450 109 43 1 3 88 8 116 2.16e-18 81.3
Msa0737220 MtrunA17_Chr5g0434571 39.450 109 43 1 3 88 44 152 2.34e-18 81.6
Msa0737220 MtrunA17_Chr7g0228231 41.905 105 38 1 7 88 14 118 2.77e-18 79.0
Msa0737220 MtrunA17_Chr7g0264641 39.286 112 44 2 3 90 8 119 3.11e-18 80.1
Msa0737220 MtrunA17_Chr4g0022891 37.903 124 50 3 3 103 8 127 3.31e-18 79.7
Msa0737220 MtrunA17_Chr2g0309911 34.783 115 52 1 3 94 7 121 4.56e-18 80.5
Msa0737220 MtrunA17_Chr8g0354661 37.963 108 42 2 5 87 33 140 4.92e-18 81.3
Msa0737220 MtrunA17_Chr7g0228891 38.532 109 44 1 3 88 8 116 4.98e-18 79.7
Msa0737220 MtrunA17_Chr6g0470971 27.189 217 120 4 4 193 11 216 1.95e-17 78.2
Msa0737220 MtrunA17_Chr4g0028311 41.071 112 42 3 3 90 8 119 1.95e-17 78.6
Msa0737220 MtrunA17_Chr1g0192411 37.143 105 43 1 7 88 12 116 1.99e-17 79.3
Msa0737220 MtrunA17_Chr2g0328771 30.921 152 77 4 7 130 20 171 3.20e-17 78.2
Msa0737220 MtrunA17_Chr4g0054391 39.806 103 38 2 3 81 8 110 3.62e-17 77.8
Msa0737220 MtrunA17_Chr8g0387421 36.697 109 46 1 3 88 8 116 3.95e-17 77.8
Msa0737220 MtrunA17_Chr3g0099131 34.615 104 45 1 7 87 41 144 4.03e-17 78.6
Msa0737220 MtrunA17_Chr6g0450101 40.000 105 40 1 7 88 14 118 4.46e-17 75.9
Msa0737220 MtrunA17_Chr8g0342481 38.393 112 45 2 3 90 8 119 6.18e-17 77.8
Msa0737220 MtrunA17_Chr1g0203441 36.538 104 43 1 8 88 14 117 1.33e-16 75.9
Msa0737220 MtrunA17_Chr7g0271241 38.655 119 50 1 4 99 9 127 1.41e-16 76.6
Msa0737220 MtrunA17_Chr2g0327821 36.190 105 44 1 7 88 6 110 1.42e-16 75.1
Msa0737220 MtrunA17_Chr4g0022881 34.921 126 58 2 3 104 8 133 1.60e-16 74.7
Msa0737220 MtrunA17_Chr4g0072751 39.423 104 39 2 3 82 8 111 3.52e-16 75.5
Msa0737220 MtrunA17_Chr1g0194301 32.609 138 67 3 2 116 28 162 3.88e-16 74.7
Msa0737220 MtrunA17_Chr3g0088461 36.697 109 46 1 3 88 18 126 4.31e-16 75.1
Msa0737220 MtrunA17_Chr4g0030881 34.211 114 45 1 8 91 8 121 6.57e-16 73.6
Msa0737220 MtrunA17_Chr2g0327351 38.462 104 40 2 3 82 8 111 9.14e-16 73.9
Msa0737220 MtrunA17_Chr2g0311221 35.577 104 44 1 3 83 10 113 1.16e-15 73.9
Msa0737220 MtrunA17_Chr4g0032401 35.455 110 48 1 7 93 17 126 1.44e-15 73.6
Msa0737220 MtrunA17_Chr2g0322521 34.545 110 49 1 1 87 23 132 1.92e-15 73.6
Msa0737220 MtrunA17_Chr6g0487491 35.000 120 46 3 3 90 8 127 2.08e-15 72.4
Msa0737220 MtrunA17_Chr5g0434881 71.053 38 11 0 1 38 1 38 5.80e-15 66.2
Msa0737220 MtrunA17_Chr5g0401731 32.800 125 62 2 9 111 15 139 6.19e-15 71.6
Msa0737220 MtrunA17_Chr7g0228531 37.255 102 43 1 7 87 218 319 8.65e-15 72.0
Msa0737220 MtrunA17_Chr3g0093811 40.964 83 43 2 12 88 4 86 9.71e-15 70.5
Msa0737220 MtrunA17_Chr5g0397231 35.922 103 43 1 3 82 8 110 1.31e-14 70.9
Msa0737220 MtrunA17_Chr4g0053431 26.455 189 89 4 9 155 5 185 3.81e-14 68.9
Msa0737220 MtrunA17_Chr4g0068921 35.156 128 59 2 2 106 19 145 6.40e-14 67.0
Msa0737220 MtrunA17_Chr1g0180391 34.286 105 46 1 7 88 19 123 1.01e-13 67.4
Msa0737220 MtrunA17_Chr2g0293911 34.959 123 56 2 7 106 24 145 1.84e-13 67.8
Msa0737220 MtrunA17_Chr1g0157731 34.615 104 46 2 9 90 91 194 2.01e-13 68.2
Msa0737220 MtrunA17_Chr4g0008551 31.250 112 55 1 9 98 38 149 2.07e-13 67.8
Msa0737220 MtrunA17_Chr7g0247131 46.552 58 31 0 42 99 36 93 2.47e-13 66.6
Msa0737220 MtrunA17_Chr7g0238631 35.294 102 44 1 9 88 113 214 5.04e-13 67.0
Msa0737220 MtrunA17_Chr4g0058991 35.922 103 44 2 7 87 207 309 6.36e-13 66.6
Msa0737220 MtrunA17_Chr3g0117511 34.454 119 53 3 9 105 183 298 8.87e-13 65.9
Msa0737220 MtrunA17_Chr3g0139671 34.615 104 46 2 9 90 85 188 9.68e-13 66.2
Msa0737220 MtrunA17_Chr2g0322831 58.974 39 16 0 42 80 34 72 1.45e-12 60.8
Msa0737220 MtrunA17_Chr6g0454921 35.577 104 45 2 9 90 15 118 1.96e-12 63.5
Msa0737220 MtrunA17_Chr4g0013361 31.818 110 50 3 2 86 4 113 2.32e-12 64.3
Msa0737220 MtrunA17_Chr5g0441131 32.692 104 46 2 7 86 9 112 3.01e-12 62.4
Msa0737220 MtrunA17_Chr5g0429661 29.730 148 71 4 9 131 122 261 3.11e-12 64.3
Msa0737220 MtrunA17_Chr3g0133601 32.110 109 52 1 2 88 30 138 4.71e-12 62.8
Msa0737220 MtrunA17_Chr8g0334881 32.110 109 50 2 2 86 5 113 5.78e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737220 AT1G66370.1 44.586 157 59 2 2 130 3 159 2.98e-36 127
Msa0737220 AT3G13540.1 39.623 159 68 4 4 139 20 173 2.25e-32 117
Msa0737220 AT4G38620.1 38.509 161 71 4 9 142 14 173 1.38e-28 108
Msa0737220 AT1G66390.1 41.667 168 67 3 5 144 6 170 1.44e-26 102
Msa0737220 AT1G22640.1 44.144 111 39 1 9 96 14 124 1.68e-26 102
Msa0737220 AT1G66380.1 53.774 106 26 1 5 87 6 111 1.75e-26 99.0
Msa0737220 AT1G56650.1 47.101 138 46 2 5 115 6 143 4.67e-26 100
Msa0737220 AT3G27920.1 46.729 107 34 1 8 91 15 121 1.09e-25 99.4
Msa0737220 AT2G16720.1 42.105 114 43 1 4 94 9 122 2.39e-25 99.4
Msa0737220 AT5G14750.1 48.077 104 31 1 8 88 17 120 4.11e-25 97.4
Msa0737220 AT5G52600.1 46.789 109 35 1 2 87 7 115 6.60e-25 96.7
Msa0737220 AT4G09460.1 38.760 129 55 2 9 113 14 142 7.88e-25 97.4
Msa0737220 AT5G16770.4 41.739 115 44 1 3 94 8 122 8.74e-25 99.0
Msa0737220 AT5G16770.3 41.739 115 44 1 3 94 8 122 8.74e-25 99.0
Msa0737220 AT5G40330.1 47.115 104 32 1 8 88 13 116 1.00e-24 96.7
Msa0737220 AT5G16770.1 41.739 115 44 1 3 94 8 122 1.05e-24 99.0
Msa0737220 AT5G16770.2 41.739 115 44 1 3 94 8 122 1.05e-24 99.0
Msa0737220 AT5G49330.1 42.727 110 40 1 4 90 9 118 1.29e-24 99.0
Msa0737220 AT4G21440.1 41.228 114 44 1 4 94 9 122 1.68e-24 98.6
Msa0737220 AT3G61250.1 37.500 136 58 2 3 115 8 139 3.16e-24 97.1
Msa0737220 AT3G28910.1 44.954 109 37 1 3 88 8 116 4.67e-24 97.1
Msa0737220 AT3G30210.1 30.213 235 112 8 6 198 26 250 4.80e-24 96.3
Msa0737220 AT5G35550.1 43.810 105 36 1 7 88 14 118 7.36e-24 95.5
Msa0737220 AT4G28110.1 39.130 115 47 1 3 94 8 122 8.24e-24 95.9
Msa0737220 AT3G47600.1 44.954 109 37 1 3 88 8 116 8.33e-24 96.7
Msa0737220 AT3G01140.2 39.062 128 55 1 3 107 8 135 9.42e-24 96.7
Msa0737220 AT4G17785.2 40.517 116 46 1 2 94 8 123 9.50e-24 96.7
Msa0737220 AT5G62470.1 44.444 117 41 2 4 96 9 125 1.01e-23 96.7
Msa0737220 AT4G17785.1 40.517 116 46 1 2 94 8 123 1.03e-23 96.7
Msa0737220 AT3G01140.1 39.062 128 55 1 3 107 51 178 1.12e-23 97.1
Msa0737220 AT4G34990.1 41.284 109 41 1 9 94 14 122 1.61e-23 94.7
Msa0737220 AT4G05100.1 39.655 116 47 1 2 94 8 123 1.61e-23 95.5
Msa0737220 AT5G62470.2 44.068 118 41 2 4 96 9 126 1.74e-23 95.9
Msa0737220 AT3G02940.2 40.870 115 45 1 3 94 8 122 2.93e-23 94.7
Msa0737220 AT3G02940.1 40.870 115 45 1 3 94 8 122 3.79e-23 94.7
Msa0737220 AT3G02940.3 40.870 115 45 1 3 94 8 122 3.79e-23 94.7
Msa0737220 AT1G74650.1 44.340 106 36 1 7 89 12 117 4.84e-23 94.4
Msa0737220 AT5G15310.4 41.739 115 44 2 3 94 8 122 8.99e-23 92.0
Msa0737220 AT5G15310.1 41.739 115 44 2 3 94 8 122 1.29e-22 93.2
Msa0737220 AT1G08810.1 42.149 121 46 2 3 99 8 128 1.52e-22 92.4
Msa0737220 AT5G15310.2 41.739 115 44 2 3 94 8 122 1.65e-22 92.8
Msa0737220 AT2G31180.1 36.196 163 76 3 4 138 9 171 1.90e-22 91.3
Msa0737220 AT1G34670.1 38.261 115 48 1 3 94 8 122 2.15e-22 93.2
Msa0737220 AT5G56110.1 42.105 114 43 1 4 94 9 122 2.31e-22 92.4
Msa0737220 AT1G35515.1 38.532 109 44 1 9 94 14 122 2.32e-22 90.5
Msa0737220 AT2G47460.1 40.741 108 41 1 4 88 9 116 3.38e-22 92.8
Msa0737220 AT3G23250.1 35.915 142 62 3 4 122 9 144 4.05e-22 91.3
Msa0737220 AT5G65230.1 39.091 110 44 1 3 89 8 117 4.89e-22 91.3
Msa0737220 AT5G07700.1 42.478 113 40 2 6 94 11 122 8.10e-22 91.3
Msa0737220 AT5G07700.2 42.478 113 40 2 6 94 11 122 8.10e-22 91.3
Msa0737220 AT3G62610.1 33.728 169 78 4 4 140 9 175 8.22e-22 91.3
Msa0737220 AT5G54230.1 40.541 111 43 1 7 94 12 122 1.03e-21 90.9
Msa0737220 AT5G61420.2 41.593 113 41 2 6 94 11 122 1.09e-21 91.3
Msa0737220 AT1G18570.1 41.593 113 41 2 6 94 12 123 1.55e-21 90.5
Msa0737220 AT1G06180.1 40.157 127 52 2 4 107 9 134 1.67e-21 89.0
Msa0737220 AT5G07690.1 41.593 113 41 2 6 94 11 122 3.29e-21 89.7
Msa0737220 AT1G74080.1 38.053 113 45 2 6 94 11 122 5.74e-21 89.0
Msa0737220 AT5G10280.1 37.500 112 47 1 1 89 6 117 6.63e-21 88.6
Msa0737220 AT4G26930.1 40.777 103 38 1 7 86 19 121 8.66e-21 89.0
Msa0737220 AT4G37780.1 39.823 113 44 2 3 91 8 120 3.33e-20 86.3
Msa0737220 AT2G32460.1 38.679 106 42 1 5 87 16 121 4.96e-20 87.4
Msa0737220 AT5G60890.1 31.875 160 66 4 6 138 11 154 5.04e-20 85.9
Msa0737220 AT4G01680.3 41.667 108 40 1 4 88 9 116 5.58e-20 84.7
Msa0737220 AT2G32460.2 40.566 106 40 2 5 87 4 109 5.68e-20 87.0
Msa0737220 AT3G01530.1 42.857 112 39 2 7 93 25 136 8.75e-20 83.6
Msa0737220 AT4G01680.1 41.667 108 40 1 4 88 9 116 1.01e-19 85.5
Msa0737220 AT5G57620.1 38.017 121 51 2 3 99 8 128 1.09e-19 85.5
Msa0737220 AT1G16490.1 36.283 113 49 1 3 92 10 122 1.15e-19 84.3
Msa0737220 AT1G25340.2 31.868 182 88 4 8 167 19 186 1.30e-19 84.3
Msa0737220 AT3G13890.2 39.640 111 44 1 3 90 8 118 1.33e-19 85.5
Msa0737220 AT5G62320.1 31.953 169 78 5 6 137 12 180 1.37e-19 83.6
Msa0737220 AT1G57560.2 36.842 114 49 1 4 94 9 122 1.58e-19 84.0
Msa0737220 AT1G25340.3 31.868 182 88 4 8 167 19 186 1.66e-19 84.7
Msa0737220 AT5G55020.1 40.777 103 38 1 7 86 26 128 1.81e-19 85.9
Msa0737220 AT1G57560.1 36.842 114 49 1 4 94 9 122 1.90e-19 84.3
Msa0737220 AT5G65790.1 36.220 127 57 2 3 105 8 134 2.45e-19 84.7
Msa0737220 AT3G46130.1 37.097 124 48 2 1 101 3 119 2.52e-19 83.2
Msa0737220 AT4G22680.1 37.391 115 49 1 3 94 8 122 2.96e-19 83.2
Msa0737220 AT4G12350.1 38.261 115 48 1 3 94 8 122 4.35e-19 83.2
Msa0737220 AT1G74430.1 37.500 112 47 1 6 94 11 122 5.12e-19 82.8
Msa0737220 AT5G26660.1 37.719 114 48 1 4 94 9 122 6.03e-19 83.6
Msa0737220 AT2G26960.1 40.566 106 40 2 4 86 17 122 6.08e-19 84.0
Msa0737220 AT1G25340.1 31.016 187 88 4 8 167 19 191 7.72e-19 82.4
Msa0737220 AT3G49690.1 38.938 113 45 2 3 91 8 120 8.06e-19 82.8
Msa0737220 AT3G24310.1 40.741 108 41 1 6 90 17 124 1.01e-18 82.0
Msa0737220 AT1G66230.1 29.688 192 93 4 3 161 8 190 1.41e-18 81.6
Msa0737220 AT4G13480.1 41.346 104 38 1 8 88 7 110 1.76e-18 81.3
Msa0737220 AT5G06100.1 34.286 105 46 1 6 87 31 135 1.82e-18 82.8
Msa0737220 AT1G22640.3 58.182 55 23 0 42 96 13 67 1.92e-18 79.7
Msa0737220 AT5G59780.3 36.441 118 45 2 7 101 8 118 2.04e-18 80.5
Msa0737220 AT3G13890.1 36.667 120 44 1 3 90 8 127 2.25e-18 82.0
Msa0737220 AT5G06100.5 33.333 108 49 1 3 87 28 135 2.31e-18 82.8
Msa0737220 AT5G06100.2 33.333 108 49 1 3 87 28 135 2.31e-18 82.8
Msa0737220 AT5G06100.3 33.333 108 49 1 3 87 28 135 2.31e-18 82.8
Msa0737220 AT5G06100.4 33.333 108 49 1 3 87 28 135 2.31e-18 82.8
Msa0737220 AT5G14750.4 72.917 48 13 0 41 88 12 59 2.34e-18 78.2
Msa0737220 AT5G14750.2 72.917 48 13 0 41 88 12 59 2.34e-18 78.2
Msa0737220 AT5G23000.1 35.374 147 68 4 3 122 8 154 2.77e-18 81.6
Msa0737220 AT1G79180.1 34.426 122 57 1 3 101 10 131 2.81e-18 80.9
Msa0737220 AT4G01680.2 37.500 120 40 1 4 88 9 128 5.64e-18 80.9
Msa0737220 AT5G14750.3 72.917 48 13 0 41 88 39 86 6.45e-18 77.8
Msa0737220 AT2G47190.1 35.811 148 63 4 2 120 15 159 7.12e-18 79.7
Msa0737220 AT1G68320.1 38.053 113 47 1 7 96 19 131 7.90e-18 79.7
Msa0737220 AT3G48920.1 32.414 145 60 2 1 122 12 141 1.85e-17 78.2
Msa0737220 AT1G09540.1 32.331 133 67 1 4 113 9 141 1.85e-17 79.7
Msa0737220 AT3G12820.1 35.455 110 48 1 3 89 10 119 1.89e-17 77.8
Msa0737220 AT3G11440.2 34.259 108 47 2 4 87 37 144 3.50e-17 79.3
Msa0737220 AT3G28470.1 35.294 153 71 3 3 132 8 155 3.81e-17 78.2
Msa0737220 AT5G16600.1 33.099 142 71 2 3 121 8 148 4.08e-17 78.2
Msa0737220 AT3G11440.3 33.945 109 48 2 3 87 36 144 4.64e-17 79.0
Msa0737220 AT3G11440.4 33.945 109 48 2 3 87 36 144 4.64e-17 79.0
Msa0737220 AT3G11440.1 33.945 109 48 2 3 87 36 144 4.64e-17 79.0
Msa0737220 AT5G40350.1 40.566 106 40 1 7 89 17 122 5.14e-17 76.3
Msa0737220 AT1G56160.1 35.780 109 47 1 3 88 10 118 7.21e-17 77.0
Msa0737220 AT3G12720.1 35.088 114 51 1 4 94 19 132 7.29e-17 77.4
Msa0737220 AT2G36890.1 40.179 112 43 2 3 90 8 119 8.06e-17 77.0
Msa0737220 AT2G36890.2 40.179 112 43 2 3 90 49 160 8.23e-17 77.4
Msa0737220 AT5G12870.1 36.190 105 44 1 7 88 18 122 1.02e-16 76.6
Msa0737220 AT1G18710.1 34.821 112 50 1 6 94 11 122 1.21e-16 76.3
Msa0737220 AT3G27810.1 32.639 144 70 2 7 127 20 159 1.23e-16 75.5
Msa0737220 AT5G35550.2 57.377 61 21 1 42 102 75 130 1.52e-16 75.9
Msa0737220 AT1G48000.1 35.338 133 60 3 7 116 32 161 2.32e-16 75.1
Msa0737220 AT4G25560.1 28.814 177 92 4 8 153 11 184 3.22e-16 75.1
Msa0737220 AT5G14340.1 35.780 109 47 1 3 88 20 128 5.97e-16 74.3
Msa0737220 AT3G08500.1 36.697 109 46 1 3 88 26 134 1.13e-15 74.3
Msa0737220 AT1G63910.1 34.862 109 48 1 3 88 8 116 1.73e-15 73.9
Msa0737220 AT3G53200.1 38.462 104 41 2 7 87 9 112 1.02e-14 70.5
Msa0737220 AT5G49620.1 36.434 129 58 2 1 106 20 147 2.05e-14 70.5
Msa0737220 AT3G09230.1 34.483 116 54 2 3 96 49 164 2.46e-14 70.9
Msa0737220 AT3G23250.2 44.444 81 39 2 42 122 13 87 2.54e-14 69.3
Msa0737220 AT3G06490.1 35.659 129 59 2 1 106 13 140 4.52e-14 69.7
Msa0737220 AT5G02320.1 35.294 102 44 1 9 88 127 228 5.17e-14 70.1
Msa0737220 AT5G02320.2 35.294 102 44 1 9 88 127 228 5.17e-14 70.1
Msa0737220 AT1G71030.2 50.943 53 26 0 42 94 24 76 5.66e-14 67.4
Msa0737220 AT1G71030.1 50.943 53 26 0 42 94 38 90 6.39e-14 67.4
Msa0737220 AT5G02320.3 35.294 102 44 1 9 88 67 168 8.80e-14 69.3
Msa0737220 AT1G74650.3 68.293 41 13 0 49 89 1 41 9.52e-14 68.2
Msa0737220 AT3G47600.2 63.830 47 17 0 42 88 64 110 9.85e-14 68.9
Msa0737220 AT2G26950.1 33.333 102 45 1 4 82 13 114 1.15e-13 68.9
Msa0737220 AT1G66380.3 76.087 46 11 0 42 87 33 78 1.20e-13 64.7
Msa0737220 AT5G11510.3 34.615 104 46 2 9 90 81 184 1.47e-13 68.9
Msa0737220 AT5G11510.1 34.615 104 46 2 9 90 81 184 1.47e-13 68.9
Msa0737220 AT5G11510.4 34.615 104 46 2 9 90 81 184 1.47e-13 68.9
Msa0737220 AT2G23290.1 36.275 102 43 2 9 88 13 114 1.56e-13 68.2
Msa0737220 AT5G11510.2 34.615 104 46 2 9 90 81 184 1.71e-13 68.6
Msa0737220 AT5G11510.5 34.615 104 46 2 9 90 81 184 1.75e-13 68.6
Msa0737220 AT4G37260.1 33.962 106 48 2 9 92 13 118 3.62e-13 67.0
Msa0737220 AT3G28910.2 67.500 40 13 0 49 88 1 40 4.31e-13 66.2
Msa0737220 AT4G18770.1 35.514 107 47 2 4 88 212 318 5.61e-13 67.0
Msa0737220 AT5G52260.1 35.514 107 46 1 4 87 9 115 1.52e-12 65.1
Msa0737220 AT3G55730.1 35.238 105 46 2 5 87 52 156 2.01e-12 65.5
Msa0737220 AT5G26660.2 50.000 54 27 0 41 94 38 91 2.59e-12 64.7
Msa0737220 AT4G32730.5 33.654 104 47 2 9 90 87 190 2.61e-12 65.5
Msa0737220 AT4G32730.4 33.654 104 47 2 9 90 87 190 2.61e-12 65.5
Msa0737220 AT4G32730.3 33.654 104 47 2 9 90 87 190 2.61e-12 65.5
Msa0737220 AT4G32730.2 33.654 104 47 2 9 90 87 190 2.61e-12 65.5
Msa0737220 AT4G32730.1 33.654 104 47 2 9 90 87 190 2.89e-12 65.1
Msa0737220 AT2G37630.1 29.600 125 62 2 12 111 7 130 3.17e-12 64.7
Msa0737220 AT3G09370.2 35.644 101 43 2 9 87 135 235 3.84e-12 64.7
Msa0737220 AT3G09370.1 35.644 101 43 2 9 87 130 230 4.01e-12 64.7
Msa0737220 AT3G09370.3 35.644 101 43 2 9 87 143 243 4.12e-12 64.7
Msa0737220 AT3G53200.2 56.522 46 20 0 42 87 34 79 5.41e-12 62.4
Msa0737220 AT3G12820.2 51.020 49 24 0 41 89 23 71 7.09e-12 62.0
Msa0737220 AT2G39880.1 34.653 101 44 2 9 87 50 150 8.28e-12 63.5
Msa0737220 AT5G59780.1 48.333 60 24 1 42 101 1 53 1.17e-11 60.8
Msa0737220 AT3G27785.1 32.759 116 56 1 4 97 184 299 1.59e-11 62.8
Msa0737220 AT1G69560.2 28.148 135 72 2 3 115 117 248 1.61e-11 62.4
Msa0737220 AT1G18960.1 33.663 101 45 2 9 88 10 109 1.72e-11 62.4
Msa0737220 AT1G69560.1 28.148 135 72 2 3 115 101 232 1.88e-11 62.4
Msa0737220 AT4G25560.2 31.667 120 71 3 42 153 2 118 1.89e-11 61.2
Msa0737220 AT3G46130.2 48.333 60 24 1 42 101 1 53 2.14e-11 60.8
Msa0737220 AT5G59780.2 48.333 60 24 1 42 101 45 97 2.72e-11 60.8
Msa0737220 AT1G79180.2 45.000 60 33 0 42 101 105 164 3.16e-11 61.6
Msa0737220 AT3G60460.1 31.776 107 49 2 4 86 8 114 3.37e-11 61.2
Msa0737220 AT3G46130.4 48.333 60 24 1 42 101 45 97 3.86e-11 60.5
Msa0737220 AT3G46130.3 48.333 60 24 1 42 101 35 87 4.19e-11 60.5
Msa0737220 AT5G49620.2 32.867 143 58 3 1 106 20 161 4.86e-11 61.2
Msa0737220 AT5G67300.1 34.653 101 44 2 9 87 6 106 5.45e-11 60.8

Find 44 sgRNAs with CRISPR-Local

Find 209 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATTATACCTGTTCTTT+TGG 0.205114 5_1:+54241985 None:intergenic
ACAAATATGGTGAAGGAAAA+TGG 0.248786 5_1:-54242018 Msa0737220:CDS
GAATGTGGTCGGACAGTTTA+TGG 0.256836 5_1:-54238817 Msa0737220:CDS
TCTTTATTTGAATTCAATAT+TGG 0.261818 5_1:+54238956 None:intergenic
CAATCTCTACCAATTTGATT+TGG 0.311300 5_1:+54238887 None:intergenic
GAATGAGTTGGAAGAGTTAT+AGG 0.312892 5_1:+54238995 None:intergenic
CAAGTAAACACTGACAAAAT+TGG 0.328570 5_1:-54238782 Msa0737220:CDS
AAGGCTTACATTCACAAATA+TGG 0.336485 5_1:-54242031 Msa0737220:CDS
ATTATGGTTCCAAATCAAAT+TGG 0.344731 5_1:-54238896 Msa0737220:CDS
TGATGGCTCATCAGAGATTA+TGG 0.349877 5_1:-54238912 Msa0737220:intron
TGAGCTTTCATTGTTTCCTT+AGG 0.350331 5_1:+54239037 None:intergenic
AGAAGAGAACAACTTTGATA+TGG 0.390818 5_1:-54238741 Msa0737220:CDS
GACAATTAAGGAAATCGTAT+AGG 0.416700 5_1:-54242124 None:intergenic
GTCGGACAGTTTATGGAACT+TGG 0.426674 5_1:-54238810 Msa0737220:CDS
ACATCATTAGCTGTTCTACT+AGG 0.453688 5_1:+54239133 None:intergenic
ATAAGGTTACACAATCTCCT+AGG 0.460309 5_1:-54239324 Msa0737220:CDS
CATTTAATTCCCAAAAGAAC+AGG 0.464950 5_1:-54241995 Msa0737220:intron
TACACAATCTCCTAGGGAAT+AGG 0.472326 5_1:-54239317 Msa0737220:intron
GATCATATCAGCTTCATCTT+CGG 0.486728 5_1:+54239347 None:intergenic
GTTGGAAGAGTTATAGGTCG+AGG 0.490309 5_1:+54239001 None:intergenic
AATAAGAGAGGCGTGAGAAA+AGG 0.498118 5_1:-54242085 Msa0737220:CDS
ATGAAGCTGATATGATCATA+AGG 0.503402 5_1:-54239341 Msa0737220:CDS
AAAAGGTCCATGGACATATG+AGG 0.521159 5_1:-54242068 Msa0737220:CDS
CGACCACATTCCACATGGTA+CGG 0.521479 5_1:+54238829 None:intergenic
TCGTATAGGAAAGGTGCGTA+TGG 0.540034 5_1:-54242110 Msa0737220:exon
GACCACATTCCACATGGTAC+GGG 0.540744 5_1:+54238830 None:intergenic
GAACACACATCTGCGGAAGA+AGG 0.555232 5_1:-54239098 Msa0737220:CDS
TACATTCACAAATATGGTGA+AGG 0.558031 5_1:-54242025 Msa0737220:CDS
TGGAAGCTTACCTATTCCCT+AGG 0.563710 5_1:+54239307 None:intergenic
TCTGCTTCACAACTAAGTCT+AGG 0.573391 5_1:-54238860 Msa0737220:CDS
TTGTCTTCCTCATATGTCCA+TGG 0.575291 5_1:+54242061 None:intergenic
AGAGAACAACTTTGATATGG+AGG 0.585265 5_1:-54238738 Msa0737220:CDS
GAGGCGTGAGAAAAGGTCCA+TGG 0.588614 5_1:-54242078 Msa0737220:CDS
TTAAGGAAATCGTATAGGAA+AGG 0.595044 5_1:-54242119 None:intergenic
TAAGGTTACACAATCTCCTA+GGG 0.604757 5_1:-54239323 Msa0737220:CDS
CTGTCCGACCACATTCCACA+TGG 0.629677 5_1:+54238824 None:intergenic
TGAGGAAGACAACTTACTGA+AGG 0.631779 5_1:-54242050 Msa0737220:CDS
GATGGTCATTGATTGCTGCA+AGG 0.644969 5_1:-54239159 Msa0737220:CDS
CGTACCATGTGGAATGTGGT+CGG 0.646204 5_1:-54238828 Msa0737220:CDS
GTCATGAAAGATGAATGAGT+TGG 0.647661 5_1:+54238983 None:intergenic
GTGCGTATGGAGAATAAGAG+AGG 0.655779 5_1:-54242097 Msa0737220:exon
TTCCCGTACCATGTGGAATG+TGG 0.662970 5_1:-54238832 Msa0737220:CDS
GGTAATGTTCCCGTACCATG+TGG 0.682093 5_1:-54238839 Msa0737220:CDS
ACTATTGGAACACACATCTG+CGG 0.684061 5_1:-54239105 Msa0737220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG - chr5_1:54239714-54239733 Msa0737220:intron 0.0%
!! ATATATATATATATATATAT+GGG - chr5_1:54239715-54239734 Msa0737220:intron 0.0%
!! TATATATATATATATATATA+GGG + chr5_1:54239714-54239733 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG + chr5_1:54239715-54239734 None:intergenic 0.0%
!!! ATTAGTTTTCAATTTTTATT+TGG + chr5_1:54239052-54239071 None:intergenic 10.0%
!! AACATTAAAATTTATATGTA+CGG + chr5_1:54239137-54239156 None:intergenic 10.0%
!!! ATATCATATTTAATTCTTTT+TGG - chr5_1:54239258-54239277 Msa0737220:intron 10.0%
!! ATATACAAATATAATAAAAG+TGG - chr5_1:54239295-54239314 Msa0737220:intron 10.0%
!! TATACAAATATAATAAAAGT+GGG - chr5_1:54239296-54239315 Msa0737220:intron 10.0%
!! AAGAAAATAAAATTATGCAT+GGG + chr5_1:54238955-54238974 None:intergenic 15.0%
!! AAAGAAAATAAAATTATGCA+TGG + chr5_1:54238956-54238975 None:intergenic 15.0%
!!! TTAACCAATTAATTTGTATT+TGG - chr5_1:54239445-54239464 Msa0737220:intron 15.0%
!!! AATTCAATTTTAACAATTTG+TGG - chr5_1:54240084-54240103 Msa0737220:intron 15.0%
!!! TTTTCATTATTTTGCTATTT+GGG + chr5_1:54240763-54240782 None:intergenic 15.0%
!! AATAAAACATCTCTTATTAT+TGG - chr5_1:54240943-54240962 Msa0737220:intron 15.0%
!! TGAAATAAATTTGTAATTCA+AGG - chr5_1:54241014-54241033 Msa0737220:intron 15.0%
!! TAAAAAAGACAATAAATTGA+AGG - chr5_1:54241048-54241067 Msa0737220:intron 15.0%
!! ATTTATACACATAATATAGA+TGG - chr5_1:54241670-54241689 Msa0737220:intron 15.0%
!!! TCTTTATTTGAATTCAATAT+TGG + chr5_1:54241894-54241913 None:intergenic 15.0%
!! TAAAGATAGTAAAATTATCA+TGG - chr5_1:54241908-54241927 Msa0737220:intron 15.0%
!! AAAAACATAATAATCTGTCA+CGG + chr5_1:54238989-54239008 None:intergenic 20.0%
!!! TTTTTTGACAAATTTTTGCT+AGG - chr5_1:54239004-54239023 Msa0737220:CDS 20.0%
!!! TTTTTGACAAATTTTTGCTA+GGG - chr5_1:54239005-54239024 Msa0737220:CDS 20.0%
!!! GTTGATTTGGTTTTTTAATT+TGG + chr5_1:54239108-54239127 None:intergenic 20.0%
!! CATTACTCTAATTATTTAGA+GGG - chr5_1:54239194-54239213 Msa0737220:intron 20.0%
!! AACTCCAAATACAAATTAAT+TGG + chr5_1:54239452-54239471 None:intergenic 20.0%
!! TGATGAAAATTGTAAACAAA+GGG + chr5_1:54239841-54239860 None:intergenic 20.0%
!! TTCAAAAGAAATAATAGGAT+AGG - chr5_1:54239989-54240008 Msa0737220:intron 20.0%
!!! ATCTGAATGTAATTAATTTG+GGG + chr5_1:54240054-54240073 None:intergenic 20.0%
!! CATCTGAATGTAATTAATTT+GGG + chr5_1:54240055-54240074 None:intergenic 20.0%
!! TCATCTGAATGTAATTAATT+TGG + chr5_1:54240056-54240075 None:intergenic 20.0%
!!! ATTTTGTCCAAAGAAAAAAA+AGG + chr5_1:54240552-54240571 None:intergenic 20.0%
!! TCTTAAAAAAGTCAAAACAA+AGG - chr5_1:54240586-54240605 Msa0737220:intron 20.0%
!! CTTAAAAAAGTCAAAACAAA+GGG - chr5_1:54240587-54240606 Msa0737220:intron 20.0%
!! TTAAAAAAGTCAAAACAAAG+GGG - chr5_1:54240588-54240607 Msa0737220:intron 20.0%
!! AATATTGGAAAGAGAAAATT+AGG + chr5_1:54240656-54240675 None:intergenic 20.0%
!!! CTTTTCATTATTTTGCTATT+TGG + chr5_1:54240764-54240783 None:intergenic 20.0%
!! CAAATAGCAAAATAATGAAA+AGG - chr5_1:54240762-54240781 Msa0737220:intron 20.0%
!!! TCTAAAATCATATTGATTCT+AGG + chr5_1:54240863-54240882 None:intergenic 20.0%
!! TTCATTATACCTGTTCTTTT+GGG + chr5_1:54238864-54238883 None:intergenic 25.0%
!! ATTCATTATACCTGTTCTTT+TGG + chr5_1:54238865-54238884 None:intergenic 25.0%
! GCATTACTCTAATTATTTAG+AGG - chr5_1:54239193-54239212 Msa0737220:intron 25.0%
!! TTTGAAAATGTCGTTATTTC+TGG - chr5_1:54239475-54239494 Msa0737220:intron 25.0%
! GTGATGAAAATTGTAAACAA+AGG + chr5_1:54239842-54239861 None:intergenic 25.0%
! ATGGCTTCAAAAGAAATAAT+AGG - chr5_1:54239984-54240003 Msa0737220:intron 25.0%
!! TCTGAATGTAATTAATTTGG+GGG + chr5_1:54240053-54240072 None:intergenic 25.0%
! AATTACATTCAGATGAACAA+TGG - chr5_1:54240060-54240079 Msa0737220:intron 25.0%
!!! AACTACACCTTTTTTTTCTT+TGG - chr5_1:54240542-54240561 Msa0737220:intron 25.0%
!!! TTGACTTTTTTAAGAAAGAG+CGG + chr5_1:54240581-54240600 None:intergenic 25.0%
! GAAAAGGAGTTCAATATAAA+AGG - chr5_1:54240778-54240797 Msa0737220:intron 25.0%
! TTGAACCAAACCAATTAAAA+AGG - chr5_1:54240832-54240851 Msa0737220:intron 25.0%
! TGAACCAAACCAATTAAAAA+GGG - chr5_1:54240833-54240852 Msa0737220:intron 25.0%
!! ATCCTTGCATTTAGTTTAAT+TGG - chr5_1:54241203-54241222 Msa0737220:intron 25.0%
!! TCCTTGCATTTAGTTTAATT+GGG - chr5_1:54241204-54241223 Msa0737220:intron 25.0%
! TTAATTGGGAACAAAGAAAA+TGG - chr5_1:54241218-54241237 Msa0737220:intron 25.0%
! TAATTGGGAACAAAGAAAAT+GGG - chr5_1:54241219-54241238 Msa0737220:intron 25.0%
!! ACACCTTCTATTTTATAAGT+GGG - chr5_1:54241281-54241300 Msa0737220:intron 25.0%
! TATACATATATGCAATTGAC+AGG - chr5_1:54241400-54241419 Msa0737220:intron 25.0%
! CTAATGATGTGAAAAACTAT+TGG - chr5_1:54241727-54241746 Msa0737220:intron 25.0%
! ATTATGGTTCCAAATCAAAT+TGG - chr5_1:54241951-54241970 Msa0737220:intron 25.0%
AAGGCTTACATTCACAAATA+TGG - chr5_1:54238816-54238835 Msa0737220:CDS 30.0%
TACATTCACAAATATGGTGA+AGG - chr5_1:54238822-54238841 Msa0737220:CDS 30.0%
ACAAATATGGTGAAGGAAAA+TGG - chr5_1:54238829-54238848 Msa0737220:CDS 30.0%
CATTTAATTCCCAAAAGAAC+AGG - chr5_1:54238852-54238871 Msa0737220:CDS 30.0%
TGCATGGGATAATATAGATT+TGG + chr5_1:54238940-54238959 None:intergenic 30.0%
ATCAACGTACATTCAAAGTT+AGG - chr5_1:54239070-54239089 Msa0737220:CDS 30.0%
CTTATATGTACTCAAAGAGT+AGG + chr5_1:54239376-54239395 None:intergenic 30.0%
CAGTTTGTGGTCAATTTATA+AGG + chr5_1:54239501-54239520 None:intergenic 30.0%
TTGGAAAATGAGGTTGTTAT+TGG + chr5_1:54239533-54239552 None:intergenic 30.0%
ATCTTCTGTTTGGTATTAGT+TGG + chr5_1:54239636-54239655 None:intergenic 30.0%
! GTAGTTTTTCATCTTCTGTT+TGG + chr5_1:54239646-54239665 None:intergenic 30.0%
TCTCATGAAATTCACTGATA+CGG - chr5_1:54240108-54240127 Msa0737220:intron 30.0%
!! GCGACAATTTTAACAATTTG+TGG - chr5_1:54240133-54240152 Msa0737220:intron 30.0%
TCTCATGAATTTCACTGATA+CGG - chr5_1:54240157-54240176 Msa0737220:intron 30.0%
!!! TTGGATAGGTTTTAGAAACA+TGG - chr5_1:54240275-54240294 Msa0737220:intron 30.0%
!!! TGGATAGGTTTTAGAAACAT+GGG - chr5_1:54240276-54240295 Msa0737220:intron 30.0%
ACCTTCAGATTAAGATTTGA+TGG + chr5_1:54240398-54240417 None:intergenic 30.0%
!!! ACACCTTCTATTTTTGAAGT+GGG + chr5_1:54240513-54240532 None:intergenic 30.0%
!!! TTTTTTAAGAAAGAGCGGTT+GGG + chr5_1:54240576-54240595 None:intergenic 30.0%
GCACAACAACTAATGAATAT+TGG + chr5_1:54240671-54240690 None:intergenic 30.0%
GGAGTAGTTGAAAATTGATA+AGG + chr5_1:54240742-54240761 None:intergenic 30.0%
!! AACTCCCTTTTTAATTGGTT+TGG + chr5_1:54240840-54240859 None:intergenic 30.0%
TAAATTTGTAATTCAAGGCG+TGG - chr5_1:54241019-54241038 Msa0737220:intron 30.0%
GGAGAGAGAAAATCATAAAA+GGG - chr5_1:54241160-54241179 Msa0737220:intron 30.0%
GAGAGAGAAAATCATAAAAG+GGG - chr5_1:54241161-54241180 Msa0737220:intron 30.0%
TCCCAATTAAACTAAATGCA+AGG + chr5_1:54241208-54241227 None:intergenic 30.0%
! ATCTTTTTGTCCATGTGATA+AGG - chr5_1:54241242-54241261 Msa0737220:intron 30.0%
! CACACCTTCTATTTTATAAG+TGG - chr5_1:54241280-54241299 Msa0737220:intron 30.0%
ACACCCACTTATAAAATAGA+AGG + chr5_1:54241287-54241306 None:intergenic 30.0%
ATGCTTTCTCTGTTGATATT+GGG + chr5_1:54241478-54241497 None:intergenic 30.0%
AATGCTTTCTCTGTTGATAT+TGG + chr5_1:54241479-54241498 None:intergenic 30.0%
ATGAAGCTGATATGATCATA+AGG - chr5_1:54241506-54241525 Msa0737220:intron 30.0%
AAATGAAAAAGAGAGACCTA+AGG - chr5_1:54241794-54241813 Msa0737220:intron 30.0%
AAAATTATCATGGATCGTGA+TGG - chr5_1:54241918-54241937 Msa0737220:intron 30.0%
CAATCTCTACCAATTTGATT+TGG + chr5_1:54241963-54241982 None:intergenic 30.0%
CAAGTAAACACTGACAAAAT+TGG - chr5_1:54242065-54242084 Msa0737220:CDS 30.0%
AGAAGAGAACAACTTTGATA+TGG - chr5_1:54242106-54242125 Msa0737220:exon 30.0%
! TGTACGGTTTGATGTTGATT+TGG + chr5_1:54239121-54239140 None:intergenic 35.0%
ATATGTACTCAAAGAGTAGG+AGG + chr5_1:54239373-54239392 None:intergenic 35.0%
!!! CTTTAGCTGTTTTGTTTTCG+AGG + chr5_1:54239564-54239583 None:intergenic 35.0%
CAAAACAGCTAAAGTCCAAA+AGG - chr5_1:54239570-54239589 Msa0737220:intron 35.0%
! CAAATTTTTCCTCCTCCTTT+TGG + chr5_1:54239588-54239607 None:intergenic 35.0%
! ATTCACCTTGAACGATTTTC+TGG + chr5_1:54239887-54239906 None:intergenic 35.0%
AGAAAATCGTTCAAGGTGAA+TGG - chr5_1:54239886-54239905 Msa0737220:intron 35.0%
GCCATCAAATCTTAATCTGA+AGG - chr5_1:54240394-54240413 Msa0737220:intron 35.0%
ACACCCACTTCAAAAATAGA+AGG - chr5_1:54240507-54240526 Msa0737220:intron 35.0%
!!! CACACCTTCTATTTTTGAAG+TGG + chr5_1:54240514-54240533 None:intergenic 35.0%
!!! CTTTTTTAAGAAAGAGCGGT+TGG + chr5_1:54240577-54240596 None:intergenic 35.0%
TGGTTCAATTGGTAAAGGTA+GGG + chr5_1:54240693-54240712 None:intergenic 35.0%
ATGGTTCAATTGGTAAAGGT+AGG + chr5_1:54240694-54240713 None:intergenic 35.0%
AACGATGGTTCAATTGGTAA+AGG + chr5_1:54240698-54240717 None:intergenic 35.0%
! AGGAAGAAGAAGATTTTCCT+GGG + chr5_1:54240722-54240741 None:intergenic 35.0%
! AAGGAAGAAGAAGATTTTCC+TGG + chr5_1:54240723-54240742 None:intergenic 35.0%
! CTAGGAACTCCCTTTTTAAT+TGG + chr5_1:54240845-54240864 None:intergenic 35.0%
TAAATCATTATGACCGAGAC+AGG - chr5_1:54241138-54241157 Msa0737220:intron 35.0%
AAATCATTATGACCGAGACA+GGG - chr5_1:54241139-54241158 Msa0737220:intron 35.0%
GGGAGAGAGAAAATCATAAA+AGG - chr5_1:54241159-54241178 Msa0737220:intron 35.0%
AGAAAATCATAAAAGGGGTG+AGG - chr5_1:54241166-54241185 Msa0737220:intron 35.0%
TGCAATTGACAGGATTGAAT+AGG - chr5_1:54241410-54241429 Msa0737220:intron 35.0%
! ACCTCAATCTACAGCTTTTT+CGG + chr5_1:54241438-54241457 None:intergenic 35.0%
AAAAAGCTGTAGATTGAGGT+GGG - chr5_1:54241438-54241457 Msa0737220:intron 35.0%
TGCTTTCTCTGTTGATATTG+GGG + chr5_1:54241477-54241496 None:intergenic 35.0%
GATCATATCAGCTTCATCTT+CGG + chr5_1:54241503-54241522 None:intergenic 35.0%
ATAAGGTTACACAATCTCCT+AGG - chr5_1:54241523-54241542 Msa0737220:intron 35.0%
TAAGGTTACACAATCTCCTA+GGG - chr5_1:54241524-54241543 Msa0737220:intron 35.0%
CATAATAAATGCATTGCCCT+TGG + chr5_1:54241563-54241582 None:intergenic 35.0%
ACATCATTAGCTGTTCTACT+AGG + chr5_1:54241717-54241736 None:intergenic 35.0%
TGAGCTTTCATTGTTTCCTT+AGG + chr5_1:54241813-54241832 None:intergenic 35.0%
! GAATGAGTTGGAAGAGTTAT+AGG + chr5_1:54241855-54241874 None:intergenic 35.0%
GTCATGAAAGATGAATGAGT+TGG + chr5_1:54241867-54241886 None:intergenic 35.0%
AGAGAACAACTTTGATATGG+AGG - chr5_1:54242109-54242128 Msa0737220:exon 35.0%
! AATAAGAGAGGCGTGAGAAA+AGG - chr5_1:54238762-54238781 Msa0737220:CDS 40.0%
AAAAGGTCCATGGACATATG+AGG - chr5_1:54238779-54238798 Msa0737220:CDS 40.0%
TTGTCTTCCTCATATGTCCA+TGG + chr5_1:54238789-54238808 None:intergenic 40.0%
TGAGGAAGACAACTTACTGA+AGG - chr5_1:54238797-54238816 Msa0737220:CDS 40.0%
GGAAGGGAAATTGGAAAATG+AGG + chr5_1:54239543-54239562 None:intergenic 40.0%
!! TGTTTTCGAGGAAGGGAAAT+TGG + chr5_1:54239552-54239571 None:intergenic 40.0%
!!! GCTGTTTTGTTTTCGAGGAA+GGG + chr5_1:54239559-54239578 None:intergenic 40.0%
!!! AGCTGTTTTGTTTTCGAGGA+AGG + chr5_1:54239560-54239579 None:intergenic 40.0%
AACAGCTAAAGTCCAAAAGG+AGG - chr5_1:54239573-54239592 Msa0737220:intron 40.0%
CTGTTTGGTATTAGTTGGCT+AGG + chr5_1:54239631-54239650 None:intergenic 40.0%
TCCAACCAGAAAATCGTTCA+AGG - chr5_1:54239879-54239898 Msa0737220:intron 40.0%
!! ACCTTGAACGATTTTCTGGT+TGG + chr5_1:54239883-54239902 None:intergenic 40.0%
CATGAAATTCACTGATACGG+CGG - chr5_1:54240111-54240130 Msa0737220:intron 40.0%
CATGAATTTCACTGATACGG+CGG - chr5_1:54240160-54240179 Msa0737220:intron 40.0%
AGAAGGCAGACATGGAAATA+AGG - chr5_1:54240194-54240213 Msa0737220:intron 40.0%
GAAGGCAGACATGGAAATAA+GGG - chr5_1:54240195-54240214 Msa0737220:intron 40.0%
ACATGGAAATAAGGGTTGAG+AGG - chr5_1:54240203-54240222 Msa0737220:intron 40.0%
ATAAGGGTTGAGAGGATTGA+AGG - chr5_1:54240211-54240230 Msa0737220:intron 40.0%
TAAGGGTTGAGAGGATTGAA+GGG - chr5_1:54240212-54240231 Msa0737220:intron 40.0%
AAGGGGAACTCAAAGAAAGT+GGG - chr5_1:54240230-54240249 Msa0737220:intron 40.0%
! GAACTCAAAGAAAGTGGGTT+TGG - chr5_1:54240235-54240254 Msa0737220:intron 40.0%
AGATGCAACGTGAATTGGAT+AGG - chr5_1:54240261-54240280 Msa0737220:intron 40.0%
!!! GTTTTAGAAACATGGGTTGC+AGG - chr5_1:54240283-54240302 Msa0737220:intron 40.0%
! AAACATGGGTTGCAGGTATT+TGG - chr5_1:54240290-54240309 Msa0737220:intron 40.0%
GGAAGAAGAAGAAGAAGAAG+AGG - chr5_1:54240311-54240330 Msa0737220:intron 40.0%
! AGAAGAAGAAGAAGAGGTGT+TGG - chr5_1:54240317-54240336 Msa0737220:intron 40.0%
!! GGTGTTGGCGTTATAAGAAA+TGG - chr5_1:54240332-54240351 Msa0737220:intron 40.0%
TGGCGTTATAAGAAATGGAG+AGG - chr5_1:54240337-54240356 Msa0737220:intron 40.0%
TTGTCCATGTGATAAGGTGT+TGG - chr5_1:54241248-54241267 Msa0737220:intron 40.0%
GAAAAAGCTGTAGATTGAGG+TGG - chr5_1:54241437-54241456 Msa0737220:intron 40.0%
TACACAATCTCCTAGGGAAT+AGG - chr5_1:54241530-54241549 Msa0737220:intron 40.0%
ACTATTGGAACACACATCTG+CGG - chr5_1:54241742-54241761 Msa0737220:intron 40.0%
TGATGGCTCATCAGAGATTA+TGG - chr5_1:54241935-54241954 Msa0737220:intron 40.0%
TCTGCTTCACAACTAAGTCT+AGG - chr5_1:54241987-54242006 Msa0737220:intron 40.0%
! TCGTATAGGAAAGGTGCGTA+TGG - chr5_1:54238737-54238756 Msa0737220:CDS 45.0%
GTGCGTATGGAGAATAAGAG+AGG - chr5_1:54238750-54238769 Msa0737220:CDS 45.0%
!! CTCAAAGAGTAGGAGGTGTT+AGG + chr5_1:54239366-54239385 None:intergenic 45.0%
!! TTGGCTTTGCATGCAGTTTG+TGG + chr5_1:54239514-54239533 None:intergenic 45.0%
AGCTAAAGTCCAAAAGGAGG+AGG - chr5_1:54239576-54239595 Msa0737220:intron 45.0%
TGGTATTAGTTGGCTAGGTG+TGG + chr5_1:54239626-54239645 None:intergenic 45.0%
AAAGGGACGAGTTTCTTGCA+GGG + chr5_1:54239824-54239843 None:intergenic 45.0%
CATCTCACGTAAGCCAACAA+TGG - chr5_1:54239935-54239954 Msa0737220:intron 45.0%
! AACAATGGTGGAATGCTGGT+GGG - chr5_1:54239950-54239969 Msa0737220:intron 45.0%
!! CTGGTGGGTTGAATCGTAAA+TGG - chr5_1:54239965-54239984 Msa0737220:intron 45.0%
CAAGAATGAGAAGGCAGACA+TGG - chr5_1:54240186-54240205 Msa0737220:intron 45.0%
AAGGGTTGAGAGGATTGAAG+GGG - chr5_1:54240213-54240232 Msa0737220:intron 45.0%
GAAGGGGAACTCAAAGAAAG+TGG - chr5_1:54240229-54240248 Msa0737220:intron 45.0%
GGAGAAGATGCAACGTGAAT+TGG - chr5_1:54240256-54240275 Msa0737220:intron 45.0%
! AAGATTTTCCTGGGCAACGA+TGG + chr5_1:54240713-54240732 None:intergenic 45.0%
! GATTTTCTCTCTCCCTGTCT+CGG + chr5_1:54241154-54241173 None:intergenic 45.0%
GCATCCAACACCTTATCACA+TGG + chr5_1:54241255-54241274 None:intergenic 45.0%
GCCGAAAAAGCTGTAGATTG+AGG - chr5_1:54241434-54241453 Msa0737220:intron 45.0%
TGGAAGCTTACCTATTCCCT+AGG + chr5_1:54241543-54241562 None:intergenic 45.0%
AGGGAATAGGTAAGCTTCCA+AGG - chr5_1:54241543-54241562 Msa0737220:intron 45.0%
GGGAATAGGTAAGCTTCCAA+GGG - chr5_1:54241544-54241563 Msa0737220:intron 45.0%
! GATGGTCATTGATTGCTGCA+AGG - chr5_1:54241688-54241707 Msa0737220:intron 45.0%
GTTGGAAGAGTTATAGGTCG+AGG + chr5_1:54241849-54241868 None:intergenic 45.0%
GAATGTGGTCGGACAGTTTA+TGG - chr5_1:54242030-54242049 Msa0737220:CDS 45.0%
GTCGGACAGTTTATGGAACT+TGG - chr5_1:54242037-54242056 Msa0737220:CDS 45.0%
!!! TTTTTTTTTAATTAATAGTA+TGG - chr5_1:54239164-54239183 Msa0737220:intron 5.0%
!! ATATATATATATATATATTG+AGG - chr5_1:54239767-54239786 Msa0737220:intron 5.0%
!! GAGTAGGAGGTGTTAGGTTG+TGG + chr5_1:54239360-54239379 None:intergenic 50.0%
CAAAGGGACGAGTTTCTTGC+AGG + chr5_1:54239825-54239844 None:intergenic 50.0%
CTCACGTAAGCCAACAATGG+TGG - chr5_1:54239938-54239957 Msa0737220:intron 50.0%
! AGCCAACAATGGTGGAATGC+TGG - chr5_1:54239946-54239965 Msa0737220:intron 50.0%
CACCAGCATTCCACCATTGT+TGG + chr5_1:54239951-54239970 None:intergenic 50.0%
! CAACAATGGTGGAATGCTGG+TGG - chr5_1:54239949-54239968 Msa0737220:intron 50.0%
CTGGGCAACGATGGTTCAAT+TGG + chr5_1:54240704-54240723 None:intergenic 50.0%
CAATTGAACCATCGTTGCCC+AGG - chr5_1:54240702-54240721 Msa0737220:intron 50.0%
GAACACACATCTGCGGAAGA+AGG - chr5_1:54241749-54241768 Msa0737220:intron 50.0%
GGTAATGTTCCCGTACCATG+TGG - chr5_1:54242008-54242027 Msa0737220:CDS 50.0%
TTCCCGTACCATGTGGAATG+TGG - chr5_1:54242015-54242034 Msa0737220:CDS 50.0%
GACCACATTCCACATGGTAC+GGG + chr5_1:54242020-54242039 None:intergenic 50.0%
CGACCACATTCCACATGGTA+CGG + chr5_1:54242021-54242040 None:intergenic 50.0%
CGTACCATGTGGAATGTGGT+CGG - chr5_1:54242019-54242038 Msa0737220:CDS 50.0%
GAGGCGTGAGAAAAGGTCCA+TGG - chr5_1:54238769-54238788 Msa0737220:CDS 55.0%
CTGTCCGACCACATTCCACA+TGG + chr5_1:54242026-54242045 None:intergenic 55.0%
CGGCGGCGACAAGAATGAGA+AGG - chr5_1:54240177-54240196 Msa0737220:intron 60.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 54238733 54242136 54238733 ID=Msa0737220;Name=Msa0737220
chr5_1 mRNA 54238733 54242136 54238733 ID=Msa0737220-mRNA-1;Parent=Msa0737220;Name=Msa0737220-mRNA-1;_AED=0.12;_eAED=0.15;_QI=23|0|0|1|0.33|0|4|0|198
chr5_1 exon 54241996 54242136 54241996 ID=Msa0737220-mRNA-1:exon:15257;Parent=Msa0737220-mRNA-1
chr5_1 exon 54239318 54239378 54239318 ID=Msa0737220-mRNA-1:exon:15256;Parent=Msa0737220-mRNA-1
chr5_1 exon 54238954 54239180 54238954 ID=Msa0737220-mRNA-1:exon:15255;Parent=Msa0737220-mRNA-1
chr5_1 exon 54238733 54238920 54238733 ID=Msa0737220-mRNA-1:exon:15254;Parent=Msa0737220-mRNA-1
chr5_1 five_prime_UTR 54242114 54242136 54242114 ID=Msa0737220-mRNA-1:five_prime_utr;Parent=Msa0737220-mRNA-1
chr5_1 CDS 54241996 54242113 54241996 ID=Msa0737220-mRNA-1:cds;Parent=Msa0737220-mRNA-1
chr5_1 CDS 54239318 54239378 54239318 ID=Msa0737220-mRNA-1:cds;Parent=Msa0737220-mRNA-1
chr5_1 CDS 54238954 54239180 54238954 ID=Msa0737220-mRNA-1:cds;Parent=Msa0737220-mRNA-1
chr5_1 CDS 54238733 54238920 54238733 ID=Msa0737220-mRNA-1:cds;Parent=Msa0737220-mRNA-1
Gene Sequence

>Msa0737220

ATGGAGAATAAGAGAGGCGTGAGAAAAGGTCCATGGACATATGAGGAAGACAACTTACTGAAGGCTTACATTCACAAATATGGTGAAGGAAAATGGCATTTAATTCCCAAAAGAACAGAAAGCATTACCGAAGATGAAGCTGATATGATCATAAGGTTACACAATCTCCTAGGGAATAGATGGTCATTGATTGCTGCAAGGCTTCCTAGTAGAACAGCTAATGATGTGAAAAACTATTGGAACACACATCTGCGGAAGAAGGTTATTTCAGAATCAGTAGAAAAAAATGAAAAAGAGAGACCTAAGGAAACAATGAAAGCTCATGAAGTTATTAAACCTCGACCTATAACTCTTCCAACTCATTCATCTTTCATGACACAACCAATATTGAATTCAAATAAAGATAAGATTATGGTTCCAAATCAAATTGGTAGAGATTGTGCTTCTGCTTCACAACTAAGTCTAGGTAATGTTCCCGTACCATGTGGAATGTGGTCGGACAGTTTATGGAACTTGGAAGAACAAGTAAACACTGACAAAATTGGCTCATGCTCTTCACTACAAGAAGAGAACAACTTTGATATGGAGGTTCCA
Protein sequence

>Msa0737220

MENKRGVRKGPWTYEEDNLLKAYIHKYGEGKWHLIPKRTESITEDEADMIIRLHNLLGNRWSLIAARLPSRTANDVKNYWNTHLRKKVISESVEKNEKERPKETMKAHEVIKPRPITLPTHSSFMTQPILNSNKDKIMVPNQIGRDCASASQLSLGNVPVPCGMWSDSLWNLEEQVNTDKIGSCSSLQEENNFDMEVP