AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0737240

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737240 MtrunA17_Chr7g0220341 57.202 243 68 6 1 211 17 255 7.49e-85 252
Msa0737240 MtrunA17_Chr5g0434891 78.571 154 13 4 73 214 1 146 4.23e-78 231
Msa0737240 MtrunA17_Chr7g0228991 54.468 235 78 5 3 211 23 254 2.75e-73 223
Msa0737240 MtrunA17_Chr5g0434931 55.455 220 81 5 3 209 29 244 1.19e-69 214
Msa0737240 MtrunA17_Chr5g0434911 59.174 218 69 7 6 210 18 228 1.41e-68 211
Msa0737240 MtrunA17_Chr5g0434841 58.500 200 61 6 3 186 14 207 9.95e-66 205
Msa0737240 MtrunA17_Chr8g0360111 52.083 240 69 7 1 211 17 239 3.55e-65 202
Msa0737240 MtrunA17_Chr7g0229131 60.428 187 43 6 41 214 4 172 2.01e-64 197
Msa0737240 MtrunA17_Chr5g0434831 59.043 188 57 5 3 174 1 184 7.14e-64 196
Msa0737240 MtrunA17_Chr7g0229101 55.491 173 48 5 41 201 4 159 4.09e-45 149
Msa0737240 MtrunA17_Chr7g0240821 51.200 125 49 2 9 121 1 125 1.32e-36 127
Msa0737240 MtrunA17_Chr4g0070641 45.000 140 63 3 9 136 12 149 1.24e-33 118
Msa0737240 MtrunA17_Chr5g0434901 63.158 114 27 3 43 144 7 117 1.86e-33 116
Msa0737240 MtrunA17_Chr4g0070611 45.000 140 63 3 9 136 12 149 5.20e-33 120
Msa0737240 MtrunA17_Chr7g0274581 53.774 106 37 2 9 102 12 117 1.65e-32 116
Msa0737240 MtrunA17_Chr3g0121241 54.369 103 35 2 9 99 42 144 1.19e-30 114
Msa0737240 MtrunA17_Chr4g0022911 50.000 122 45 3 9 114 13 134 1.93e-30 113
Msa0737240 MtrunA17_Chr4g0022931 45.985 137 57 3 9 128 13 149 4.93e-30 112
Msa0737240 MtrunA17_Chr2g0323351 47.656 128 47 3 9 116 12 139 1.00e-29 110
Msa0737240 MtrunA17_Chr7g0275911 49.524 105 41 2 14 106 17 121 4.35e-29 109
Msa0737240 MtrunA17_Chr4g0022901 53.398 103 36 2 9 99 13 115 7.44e-29 108
Msa0737240 MtrunA17_Chr8g0346561 49.057 106 42 2 9 102 12 117 1.97e-28 108
Msa0737240 MtrunA17_Chr1g0187761 44.167 120 55 2 9 116 12 131 1.98e-28 107
Msa0737240 MtrunA17_Chr7g0217221 43.609 133 62 3 9 129 12 143 2.25e-28 107
Msa0737240 MtrunA17_Chr1g0203411 48.739 119 48 3 2 108 6 123 3.48e-28 107
Msa0737240 MtrunA17_Chr5g0435101 50.485 103 39 2 9 99 11 113 5.50e-28 105
Msa0737240 MtrunA17_Chr1g0167661 48.624 109 44 2 9 105 12 120 7.17e-28 105
Msa0737240 MtrunA17_Chr5g0395281 50.485 103 39 2 9 99 12 114 9.62e-28 106
Msa0737240 MtrunA17_Chr1g0167691 49.515 103 40 2 9 99 12 114 1.03e-27 105
Msa0737240 MtrunA17_Chr4g0048511 48.182 110 45 2 2 99 6 115 1.22e-27 107
Msa0737240 MtrunA17_Chr2g0281071 48.182 110 45 2 2 99 6 115 1.62e-27 107
Msa0737240 MtrunA17_Chr7g0261281 50.485 103 39 2 9 99 12 114 1.78e-27 105
Msa0737240 MtrunA17_Chr3g0115821 49.524 105 41 2 9 101 12 116 2.59e-27 106
Msa0737240 MtrunA17_Chr4g0037141 49.515 103 40 2 11 101 14 116 4.19e-27 104
Msa0737240 MtrunA17_Chr4g0042671 51.456 103 38 2 9 99 12 114 4.57e-27 106
Msa0737240 MtrunA17_Chr4g0055981 38.554 166 83 5 8 161 54 212 5.07e-27 103
Msa0737240 MtrunA17_Chr6g0453471 51.456 103 38 2 9 99 12 114 5.07e-27 105
Msa0737240 MtrunA17_Chr3g0131121 47.458 118 48 3 11 114 14 131 6.84e-27 104
Msa0737240 MtrunA17_Chr7g0270891 49.057 106 42 2 9 102 12 117 1.09e-26 105
Msa0737240 MtrunA17_Chr4g0039971 49.515 103 40 2 9 99 13 115 1.46e-26 104
Msa0737240 MtrunA17_Chr1g0203441 47.826 115 48 2 10 112 14 128 1.54e-26 102
Msa0737240 MtrunA17_Chr8g0343831 49.057 106 42 2 9 102 8 113 1.81e-26 102
Msa0737240 MtrunA17_Chr7g0217741 50.485 103 39 2 9 99 12 114 2.48e-26 103
Msa0737240 MtrunA17_Chr3g0117091 42.657 143 67 4 9 137 12 153 3.52e-26 103
Msa0737240 MtrunA17_Chr3g0092401 43.966 116 53 2 9 112 13 128 6.61e-26 102
Msa0737240 MtrunA17_Chr2g0323411 49.515 103 40 2 9 99 12 114 6.80e-26 102
Msa0737240 MtrunA17_Chr1g0193801 49.057 106 42 2 9 102 12 117 7.24e-26 103
Msa0737240 MtrunA17_Chr5g0410961 48.571 105 42 2 9 101 12 116 7.29e-26 102
Msa0737240 MtrunA17_Chr7g0254411 48.571 105 42 2 9 101 12 116 7.63e-26 102
Msa0737240 MtrunA17_Chr4g0044421 49.515 103 40 2 11 101 14 116 9.78e-26 99.0
Msa0737240 MtrunA17_Chr3g0103281 48.246 114 46 3 2 103 6 118 2.07e-25 100
Msa0737240 MtrunA17_Chr4g0068061 45.714 105 45 2 9 101 12 116 2.28e-25 100
Msa0737240 MtrunA17_Chr4g0060721 47.619 105 43 2 9 101 13 117 2.46e-25 100
Msa0737240 MtrunA17_Chr8g0342541 45.872 109 47 2 5 101 8 116 3.30e-25 100
Msa0737240 MtrunA17_Chr1g0211161 42.105 133 64 3 9 128 13 145 3.44e-25 98.2
Msa0737240 MtrunA17_Chr1g0193371 48.113 106 43 2 9 102 12 117 4.03e-25 100
Msa0737240 MtrunA17_Chr4g0058631 46.667 105 44 2 9 101 12 116 6.49e-25 100
Msa0737240 MtrunA17_Chr8g0385321 46.602 103 43 2 11 101 14 116 8.37e-25 99.0
Msa0737240 MtrunA17_Chr8g0349261 46.847 111 46 3 2 99 6 116 1.18e-24 98.6
Msa0737240 MtrunA17_Chr2g0330041 46.729 107 45 2 5 99 8 114 1.25e-24 99.8
Msa0737240 MtrunA17_Chr4g0042611 54.762 84 36 2 2 84 6 88 1.54e-24 92.4
Msa0737240 MtrunA17_Chr5g0395221 54.545 77 34 1 9 84 12 88 3.00e-24 92.0
Msa0737240 MtrunA17_Chr8g0342521 44.037 109 49 2 5 101 8 116 3.66e-24 97.8
Msa0737240 MtrunA17_Chr8g0387421 42.727 110 51 2 5 102 8 117 5.31e-24 97.1
Msa0737240 MtrunA17_Chr5g0400821 44.915 118 51 4 9 113 12 128 6.22e-24 96.7
Msa0737240 MtrunA17_Chr8g0342531 46.316 95 50 1 5 98 8 102 6.64e-24 93.2
Msa0737240 MtrunA17_Chr3g0080861 43.119 109 50 2 8 104 36 144 1.04e-23 98.2
Msa0737240 MtrunA17_Chr1g0151941 42.969 128 58 5 2 115 6 132 1.30e-23 94.7
Msa0737240 MtrunA17_Chr6g0452271 44.545 110 48 3 2 99 6 114 1.79e-23 95.9
Msa0737240 MtrunA17_Chr6g0453211 47.000 100 41 2 9 96 12 111 1.79e-23 95.5
Msa0737240 MtrunA17_Chr6g0470971 43.846 130 48 4 10 127 15 131 2.03e-23 94.7
Msa0737240 MtrunA17_Chr1g0152011 42.500 120 56 3 9 115 12 131 3.08e-23 95.5
Msa0737240 MtrunA17_Chr1g0186061 45.133 113 50 2 10 110 21 133 3.18e-23 94.0
Msa0737240 MtrunA17_Chr1g0209661 46.226 106 45 2 9 102 27 132 3.71e-23 94.7
Msa0737240 MtrunA17_Chr4g0022891 37.589 141 71 3 9 132 12 152 7.11e-23 92.4
Msa0737240 MtrunA17_Chr8g0342511 52.500 80 37 1 5 83 8 87 7.31e-23 88.6
Msa0737240 MtrunA17_Chr7g0271241 50.000 98 37 2 9 94 12 109 8.80e-23 94.7
Msa0737240 MtrunA17_Chr4g0022881 44.118 102 45 2 10 99 13 114 1.10e-22 91.7
Msa0737240 MtrunA17_Chr3g0135311 41.667 120 57 3 9 115 12 131 1.16e-22 94.0
Msa0737240 MtrunA17_Chr7g0228231 41.379 116 56 2 9 112 14 129 1.22e-22 91.3
Msa0737240 MtrunA17_Chr1g0168661 43.478 115 53 2 8 110 20 134 1.38e-22 92.0
Msa0737240 MtrunA17_Chr5g0417821 44.037 109 49 2 3 99 1 109 1.73e-22 92.4
Msa0737240 MtrunA17_Chr1g0194951 43.810 105 47 2 9 101 12 116 1.92e-22 93.6
Msa0737240 MtrunA17_Chr3g0099131 43.396 106 48 2 9 102 41 146 2.03e-22 94.7
Msa0737240 MtrunA17_Chr2g0294811 53.247 77 35 1 9 84 12 88 2.09e-22 88.2
Msa0737240 MtrunA17_Chr7g0264641 44.828 116 51 3 9 111 12 127 3.08e-22 91.7
Msa0737240 MtrunA17_Chr2g0323321 53.247 77 35 1 9 84 11 87 3.50e-22 87.4
Msa0737240 MtrunA17_Chr2g0328771 42.453 106 49 2 9 102 20 125 5.24e-22 91.7
Msa0737240 MtrunA17_Chr1g0194291 39.103 156 78 5 4 144 16 169 5.84e-22 90.5
Msa0737240 MtrunA17_Chr2g0311221 43.925 107 47 3 2 96 8 113 6.45e-22 91.7
Msa0737240 MtrunA17_Chr8g0342481 45.370 108 46 3 5 99 8 115 6.89e-22 92.4
Msa0737240 MtrunA17_Chr8g0354661 43.119 109 50 2 8 104 36 144 7.72e-22 92.8
Msa0737240 MtrunA17_Chr4g0032401 43.396 106 48 2 9 102 17 122 1.81e-21 90.5
Msa0737240 MtrunA17_Chr3g0110351 46.226 106 45 2 9 102 12 117 1.98e-21 90.1
Msa0737240 MtrunA17_Chr4g0057031 44.762 105 46 2 9 101 12 116 2.44e-21 89.0
Msa0737240 MtrunA17_Chr3g0088461 42.727 110 51 2 5 102 18 127 2.89e-21 90.1
Msa0737240 MtrunA17_Chr2g0309911 41.905 105 49 2 9 101 11 115 3.94e-21 89.4
Msa0737240 MtrunA17_Chr5g0397231 41.748 103 48 2 5 95 8 110 4.74e-21 89.4
Msa0737240 MtrunA17_Chr5g0434571 45.283 106 46 2 9 102 48 153 4.75e-21 89.7
Msa0737240 MtrunA17_Chr1g0180391 43.396 106 48 2 9 102 19 124 7.73e-21 87.0
Msa0737240 MtrunA17_Chr1g0194301 41.228 114 55 2 4 105 28 141 9.73e-21 87.4
Msa0737240 MtrunA17_Chr6g0450101 43.396 106 48 2 9 102 14 119 9.99e-21 86.3
Msa0737240 MtrunA17_Chr4g0054391 35.263 190 99 7 2 168 6 194 1.10e-20 87.8
Msa0737240 MtrunA17_Chr2g0322521 44.444 108 48 2 9 104 29 136 1.53e-20 88.6
Msa0737240 MtrunA17_Chr7g0228891 44.340 106 47 2 9 102 12 117 2.11e-20 86.7
Msa0737240 MtrunA17_Chr6g0487491 42.857 119 46 4 2 99 6 123 3.33e-20 85.9
Msa0737240 MtrunA17_Chr4g0028311 43.590 117 52 4 2 105 6 121 4.03e-20 86.7
Msa0737240 MtrunA17_Chr2g0327821 36.220 127 66 3 9 123 6 129 5.87e-20 84.7
Msa0737240 MtrunA17_Chr1g0154031 42.056 107 50 2 9 103 76 182 6.38e-20 87.0
Msa0737240 MtrunA17_Chr8g0342461 49.412 85 40 3 2 84 6 89 1.79e-19 80.9
Msa0737240 MtrunA17_Chr2g0327351 46.000 100 41 3 9 95 12 111 2.71e-19 84.3
Msa0737240 MtrunA17_Chr7g0269831 43.810 105 47 2 9 101 12 116 3.43e-19 84.3
Msa0737240 MtrunA17_Chr3g0099141 46.835 79 41 1 9 86 40 118 4.56e-19 80.1
Msa0737240 MtrunA17_Chr5g0440781 40.777 103 48 2 10 99 13 115 5.59e-19 80.9
Msa0737240 MtrunA17_Chr8g0342471 48.235 85 41 3 2 84 6 89 7.09e-19 79.3
Msa0737240 MtrunA17_Chr5g0440761 40.777 103 48 2 10 99 13 115 1.24e-18 81.6
Msa0737240 MtrunA17_Chr4g0072751 44.000 100 43 3 9 95 12 111 1.44e-18 82.8
Msa0737240 MtrunA17_Chr5g0441141 40.777 103 48 2 10 99 13 115 1.88e-18 81.3
Msa0737240 MtrunA17_Chr4g0030881 36.800 125 58 4 3 108 1 123 5.40e-18 79.7
Msa0737240 MtrunA17_Chr1g0192411 38.835 103 51 2 9 99 12 114 1.24e-17 80.5
Msa0737240 MtrunA17_Chr2g0293911 41.176 119 57 3 9 114 24 142 1.47e-16 76.6
Msa0737240 MtrunA17_Chr5g0425591 42.169 83 47 1 1 82 1 83 2.17e-16 71.6
Msa0737240 MtrunA17_Chr4g0068921 42.593 108 50 2 4 99 19 126 2.67e-16 73.9
Msa0737240 MtrunA17_Chr4g0013361 38.318 107 53 2 9 102 10 116 1.13e-15 73.9
Msa0737240 MtrunA17_Chr5g0441131 33.929 112 61 2 1 99 1 112 2.99e-15 70.9
Msa0737240 MtrunA17_Chr4g0053431 39.604 101 48 3 11 99 5 104 5.79e-15 71.6
Msa0737240 MtrunA17_Chr8g0334881 32.749 171 94 5 9 161 10 177 8.55e-15 71.6
Msa0737240 MtrunA17_Chr5g0434881 68.293 41 13 0 3 43 1 41 3.08e-14 64.7
Msa0737240 MtrunA17_Chr7g0247131 45.333 75 29 2 41 103 10 84 4.67e-14 69.3
Msa0737240 MtrunA17_Chr6g0453751 40.698 86 42 2 7 83 18 103 5.77e-14 66.2
Msa0737240 MtrunA17_Chr4g0008551 33.898 118 64 4 11 115 38 154 1.28e-13 68.6
Msa0737240 MtrunA17_Chr5g0401731 37.624 101 50 3 11 99 15 114 1.36e-13 68.6
Msa0737240 MtrunA17_Chr4g0042501 35.780 109 57 3 6 102 100 207 2.08e-13 68.2
Msa0737240 MtrunA17_Chr1g0157731 35.922 103 53 3 9 99 89 190 2.18e-13 68.6
Msa0737240 MtrunA17_Chr5g0417621 37.624 101 50 3 14 102 137 236 3.06e-13 67.8
Msa0737240 MtrunA17_Chr3g0139671 35.644 101 52 3 11 99 85 184 1.92e-12 65.9
Msa0737240 MtrunA17_Chr5g0434871 62.500 72 14 2 70 130 2 71 3.00e-12 60.1
Msa0737240 MtrunA17_Chr1g0193901 45.000 60 33 0 5 64 8 67 3.34e-12 60.8
Msa0737240 MtrunA17_Chr1g0193891 45.000 60 33 0 5 64 8 67 3.34e-12 60.8
Msa0737240 MtrunA17_Chr1g0193871 45.000 60 33 0 5 64 8 67 3.34e-12 60.8
Msa0737240 MtrunA17_Chr1g0193881 45.000 60 33 0 5 64 8 67 3.34e-12 60.8
Msa0737240 MtrunA17_Chr3g0133601 38.614 101 49 3 11 99 37 136 3.50e-12 63.5
Msa0737240 MtrunA17_Chr7g0228531 35.417 96 50 2 11 95 220 314 6.05e-12 63.9
Msa0737240 MtrunA17_Chr7g0238651 33.945 109 58 3 11 105 7 115 6.29e-12 63.9
Msa0737240 MtrunA17_Chr7g0238631 34.586 133 70 5 9 127 111 240 1.76e-11 62.8
Msa0737240 MtrunA17_Chr5g0429661 26.630 184 100 6 4 174 115 276 1.95e-11 62.4
Msa0737240 MtrunA17_Chr6g0460661 40.964 83 47 2 11 92 16 97 2.17e-11 60.1
Msa0737240 MtrunA17_Chr6g0480581 35.714 98 50 3 14 99 7 103 2.88e-11 61.2
Msa0737240 MtrunA17_Chr6g0460671 34.545 110 59 3 5 102 93 201 4.39e-11 61.2
Msa0737240 MtrunA17_Chr3g0125801 27.273 187 115 7 2 174 7 186 7.71e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0737240 AT1G66370.1 54.110 146 52 4 4 134 3 148 9.00e-42 142
Msa0737240 AT1G56650.1 53.741 147 54 3 5 137 4 150 5.28e-36 127
Msa0737240 AT1G66390.1 52.703 148 55 3 5 137 4 151 4.43e-34 122
Msa0737240 AT1G66380.1 63.551 107 27 2 5 99 4 110 4.60e-34 119
Msa0737240 AT3G13540.1 42.045 176 80 6 9 165 23 195 1.60e-33 120
Msa0737240 AT5G14750.1 49.167 120 48 3 4 111 11 129 1.77e-30 111
Msa0737240 AT5G40330.1 52.941 102 36 2 10 99 13 114 1.12e-29 110
Msa0737240 AT1G22640.1 51.429 105 39 2 9 101 12 116 1.29e-29 110
Msa0737240 AT3G27920.1 44.444 126 55 3 10 120 15 140 1.11e-28 107
Msa0737240 AT4G17785.2 50.000 110 43 2 2 99 6 115 1.61e-28 110
Msa0737240 AT4G17785.1 50.000 110 43 2 2 99 6 115 1.67e-28 110
Msa0737240 AT2G16720.1 43.704 135 54 3 9 121 12 146 2.27e-28 108
Msa0737240 AT5G35550.1 41.096 146 69 3 9 137 14 159 3.44e-28 107
Msa0737240 AT5G16770.4 50.909 110 40 3 2 99 7 114 5.15e-28 108
Msa0737240 AT5G16770.3 50.909 110 40 3 2 99 7 114 5.15e-28 108
Msa0737240 AT4G38620.1 50.485 103 39 2 11 101 14 116 5.48e-28 107
Msa0737240 AT5G16770.1 50.909 110 40 3 2 99 7 114 6.03e-28 108
Msa0737240 AT5G16770.2 50.909 110 40 3 2 99 7 114 6.03e-28 108
Msa0737240 AT3G23250.1 45.833 120 50 3 9 113 12 131 1.10e-27 106
Msa0737240 AT4G09460.1 42.188 128 62 2 11 126 14 141 1.40e-27 105
Msa0737240 AT1G66380.2 67.901 81 25 1 5 84 4 84 2.32e-27 100
Msa0737240 AT1G18570.1 48.182 110 45 2 2 99 6 115 2.92e-27 106
Msa0737240 AT4G01680.3 50.000 106 41 2 9 102 12 117 2.99e-27 104
Msa0737240 AT1G74080.1 49.515 103 40 2 9 99 12 114 2.99e-27 106
Msa0737240 AT5G07690.1 51.456 103 38 2 9 99 12 114 5.00e-27 105
Msa0737240 AT5G61420.2 51.456 103 38 2 9 99 12 114 5.09e-27 106
Msa0737240 AT5G07700.1 52.427 103 37 2 9 99 12 114 6.47e-27 105
Msa0737240 AT5G07700.2 52.427 103 37 2 9 99 12 114 6.47e-27 105
Msa0737240 AT3G47600.1 50.000 106 41 2 9 102 12 117 6.93e-27 105
Msa0737240 AT1G34670.1 50.909 110 40 3 2 99 7 114 7.81e-27 105
Msa0737240 AT5G60890.1 49.057 106 42 2 9 102 12 117 8.29e-27 104
Msa0737240 AT5G52600.1 42.748 131 56 3 4 122 7 130 8.32e-27 102
Msa0737240 AT5G54230.1 50.476 105 40 2 9 101 12 116 1.09e-26 104
Msa0737240 AT3G30210.1 44.030 134 58 4 10 130 28 157 1.09e-26 103
Msa0737240 AT4G01680.1 50.000 106 41 2 9 102 12 117 1.10e-26 104
Msa0737240 AT1G74430.1 51.456 103 38 2 9 99 12 114 1.22e-26 103
Msa0737240 AT4G05100.1 47.273 110 46 2 2 99 6 115 1.35e-26 104
Msa0737240 AT3G02940.2 49.515 103 40 2 9 99 12 114 1.38e-26 104
Msa0737240 AT1G06180.1 44.828 116 52 2 9 112 12 127 1.40e-26 102
Msa0737240 AT3G02940.1 49.515 103 40 2 9 99 12 114 1.67e-26 104
Msa0737240 AT3G02940.3 49.515 103 40 2 9 99 12 114 1.67e-26 104
Msa0737240 AT4G34990.1 49.515 103 40 2 11 101 14 116 1.81e-26 103
Msa0737240 AT5G10280.1 50.485 103 39 2 9 99 12 114 2.07e-26 103
Msa0737240 AT5G62470.2 47.059 119 48 3 9 115 12 127 2.39e-26 104
Msa0737240 AT5G15310.1 50.485 103 39 2 9 99 12 114 2.79e-26 103
Msa0737240 AT5G15310.4 49.524 105 41 2 9 101 12 116 2.93e-26 102
Msa0737240 AT5G15310.2 50.485 103 39 2 9 99 12 114 3.01e-26 103
Msa0737240 AT4G21440.1 49.515 103 40 2 9 99 12 114 3.30e-26 103
Msa0737240 AT1G35515.1 47.619 105 43 2 9 101 12 116 3.33e-26 100
Msa0737240 AT3G01140.2 50.485 103 39 2 9 99 12 114 3.41e-26 103
Msa0737240 AT3G61250.1 49.515 103 40 2 9 99 12 114 4.26e-26 102
Msa0737240 AT1G18710.1 51.456 103 38 2 9 99 12 114 4.87e-26 101
Msa0737240 AT3G01140.1 50.485 103 39 2 9 99 55 157 4.90e-26 103
Msa0737240 AT3G13890.2 46.789 109 46 2 5 101 8 116 6.28e-26 103
Msa0737240 AT5G49330.1 46.429 112 47 3 2 101 6 116 7.23e-26 102
Msa0737240 AT3G28910.1 49.524 105 41 2 9 101 12 116 9.05e-26 102
Msa0737240 AT5G56110.1 50.000 114 44 3 2 103 6 118 9.99e-26 102
Msa0737240 AT1G74650.1 49.091 110 43 3 2 99 6 114 1.04e-25 102
Msa0737240 AT5G65230.1 50.485 103 39 2 9 99 12 114 1.59e-25 101
Msa0737240 AT3G48920.1 42.276 123 59 2 3 113 12 134 1.73e-25 100
Msa0737240 AT1G08810.1 44.715 123 52 3 9 119 12 130 2.96e-25 100
Msa0737240 AT5G26660.1 48.113 106 43 2 9 102 12 117 3.12e-25 101
Msa0737240 AT4G28110.1 46.602 103 43 2 9 99 12 114 7.14e-25 99.0
Msa0737240 AT5G62470.1 47.059 119 47 4 9 115 12 126 8.41e-25 100
Msa0737240 AT2G31180.1 48.544 103 41 2 9 99 12 114 1.28e-24 97.8
Msa0737240 AT3G62610.1 44.860 107 47 2 9 103 12 118 1.94e-24 99.0
Msa0737240 AT1G57560.1 33.005 203 118 5 9 197 12 210 2.71e-24 98.2
Msa0737240 AT1G57560.2 46.667 105 44 2 9 101 12 116 3.45e-24 97.1
Msa0737240 AT4G25560.1 37.821 156 70 3 10 138 11 166 3.54e-24 97.4
Msa0737240 AT2G47460.1 44.545 110 48 3 2 99 6 114 3.74e-24 98.6
Msa0737240 AT1G16490.1 46.364 110 46 3 2 99 8 116 4.73e-24 96.7
Msa0737240 AT5G55020.1 43.925 107 48 2 8 102 25 131 1.70e-23 97.8
Msa0737240 AT4G01680.2 44.915 118 41 3 9 102 12 129 2.34e-23 96.3
Msa0737240 AT5G57620.1 44.444 117 52 3 9 112 12 128 2.35e-23 95.9
Msa0737240 AT3G28470.1 47.170 106 43 3 2 95 6 110 2.37e-23 95.5
Msa0737240 AT4G26930.1 38.235 136 71 3 8 130 18 153 2.69e-23 96.7
Msa0737240 AT4G13480.1 45.217 115 51 2 8 110 5 119 2.72e-23 94.4
Msa0737240 AT5G12870.1 44.340 106 47 2 9 102 18 123 2.95e-23 94.7
Msa0737240 AT1G79180.1 44.545 110 48 3 2 99 8 116 3.11e-23 95.1
Msa0737240 AT1G09540.1 44.340 106 47 2 9 102 12 117 3.97e-23 95.9
Msa0737240 AT3G13890.1 43.220 118 46 3 5 101 8 125 5.49e-23 95.5
Msa0737240 AT1G63910.1 42.727 110 51 2 5 102 8 117 6.07e-23 95.1
Msa0737240 AT1G25340.1 48.571 105 42 2 10 102 19 123 6.22e-23 94.0
Msa0737240 AT5G23000.1 36.095 169 91 6 2 154 6 173 1.15e-22 94.0
Msa0737240 AT2G32460.1 42.727 110 51 2 7 104 16 125 1.16e-22 95.5
Msa0737240 AT2G32460.2 42.727 110 51 2 7 104 4 113 1.25e-22 95.5
Msa0737240 AT3G24310.1 44.248 113 51 2 10 110 19 131 1.40e-22 92.8
Msa0737240 AT3G12820.1 45.455 110 47 3 2 99 8 116 2.07e-22 91.7
Msa0737240 AT1G56160.1 45.455 110 47 3 2 99 8 116 3.48e-22 92.0
Msa0737240 AT3G11440.2 41.284 109 52 2 8 104 40 148 3.80e-22 94.0
Msa0737240 AT3G01530.1 41.739 115 55 2 4 106 20 134 5.20e-22 89.7
Msa0737240 AT3G12720.1 43.689 103 46 2 9 99 22 124 5.73e-22 91.7
Msa0737240 AT3G11440.3 41.284 109 52 2 8 104 40 148 5.81e-22 93.6
Msa0737240 AT3G11440.4 41.284 109 52 2 8 104 40 148 5.81e-22 93.6
Msa0737240 AT3G11440.1 41.284 109 52 2 8 104 40 148 5.81e-22 93.6
Msa0737240 AT5G06100.1 40.179 112 55 2 5 104 28 139 6.22e-22 93.2
Msa0737240 AT2G26960.1 42.593 108 50 2 7 102 18 125 6.91e-22 92.8
Msa0737240 AT5G06100.5 40.179 112 55 2 5 104 28 139 8.04e-22 93.2
Msa0737240 AT5G06100.2 40.179 112 55 2 5 104 28 139 8.04e-22 93.2
Msa0737240 AT5G06100.3 40.179 112 55 2 5 104 28 139 8.04e-22 93.2
Msa0737240 AT5G06100.4 40.179 112 55 2 5 104 28 139 8.04e-22 93.2
Msa0737240 AT5G65790.1 42.400 125 58 4 9 120 12 135 1.14e-21 92.0
Msa0737240 AT3G49690.1 44.444 117 51 4 9 112 12 127 1.46e-21 90.9
Msa0737240 AT4G37780.1 43.363 113 51 3 8 107 11 123 1.72e-21 90.5
Msa0737240 AT4G12350.1 46.154 104 44 2 8 99 11 114 2.45e-21 89.7
Msa0737240 AT3G08500.1 44.340 106 47 2 9 102 30 135 2.53e-21 90.5
Msa0737240 AT2G47190.1 42.453 106 49 2 9 102 20 125 2.84e-21 89.4
Msa0737240 AT5G62320.1 37.838 148 65 5 9 132 13 157 3.22e-21 88.6
Msa0737240 AT1G48000.1 45.283 106 46 2 9 102 32 137 4.65e-21 88.2
Msa0737240 AT5G52260.1 49.020 102 40 2 10 99 13 114 4.88e-21 88.6
Msa0737240 AT1G66230.1 44.340 106 47 2 9 102 12 117 5.89e-21 88.6
Msa0737240 AT1G68320.1 46.226 106 45 2 9 102 19 124 1.01e-20 88.2
Msa0737240 AT3G46130.1 41.667 120 55 3 1 108 1 117 1.03e-20 87.4
Msa0737240 AT5G59780.3 42.342 111 49 3 10 108 9 116 1.64e-20 86.7
Msa0737240 AT2G36890.1 46.226 106 44 3 9 101 12 117 1.73e-20 87.4
Msa0737240 AT2G36890.2 46.226 106 44 3 9 101 53 158 2.09e-20 87.8
Msa0737240 AT4G22680.1 46.602 103 43 2 9 99 12 114 2.36e-20 86.7
Msa0737240 AT3G27810.1 31.122 196 104 5 9 179 20 209 2.78e-20 85.9
Msa0737240 AT5G14340.1 43.396 106 48 2 9 102 24 129 5.76e-20 85.9
Msa0737240 AT5G16600.1 45.283 106 46 2 9 102 12 117 6.83e-20 86.3
Msa0737240 AT3G53200.1 30.918 207 119 4 1 188 1 202 7.04e-20 84.7
Msa0737240 AT5G40350.1 42.727 110 51 2 9 106 17 126 7.40e-20 84.3
Msa0737240 AT1G25340.2 46.667 105 39 3 10 102 19 118 1.20e-19 85.1
Msa0737240 AT1G25340.3 46.667 105 39 3 10 102 19 118 1.58e-19 85.1
Msa0737240 AT5G14750.3 51.136 88 27 4 36 111 12 95 1.03e-18 80.1
Msa0737240 AT2G26950.1 37.624 101 51 2 7 95 14 114 9.75e-18 80.9
Msa0737240 AT1G79180.2 33.566 143 49 4 2 99 8 149 3.92e-17 79.0
Msa0737240 AT1G66380.3 64.789 71 13 2 41 99 7 77 1.24e-16 72.8
Msa0737240 AT3G06490.1 41.739 115 55 2 3 105 13 127 3.03e-16 76.3
Msa0737240 AT3G47600.2 54.795 73 21 2 42 102 39 111 1.14e-15 74.7
Msa0737240 AT1G69560.2 32.117 137 75 4 14 138 126 256 2.79e-15 73.9
Msa0737240 AT1G69560.1 32.117 137 75 4 14 138 110 240 2.80e-15 73.6
Msa0737240 AT5G35550.2 39.823 113 51 3 42 137 50 162 4.10e-15 72.4
Msa0737240 AT5G49620.1 40.870 115 56 2 3 105 20 134 1.11e-14 71.6
Msa0737240 AT3G53200.2 31.395 172 94 4 36 188 3 169 1.41e-14 70.1
Msa0737240 AT3G60460.1 37.383 107 54 2 9 102 11 117 1.51e-14 71.2
Msa0737240 AT5G11510.3 38.835 103 50 3 9 99 79 180 1.51e-14 72.4
Msa0737240 AT5G11510.1 38.835 103 50 3 9 99 79 180 1.51e-14 72.4
Msa0737240 AT5G11510.4 38.835 103 50 3 9 99 79 180 1.51e-14 72.4
Msa0737240 AT1G26780.2 34.959 123 65 4 8 116 95 216 2.11e-14 71.2
Msa0737240 AT5G26660.2 47.436 78 29 2 37 102 9 86 2.12e-14 71.2
Msa0737240 AT5G11510.2 38.835 103 50 3 9 99 79 180 2.13e-14 72.0
Msa0737240 AT5G11510.5 38.095 105 52 3 9 101 79 182 2.18e-14 72.0
Msa0737240 AT1G26780.1 34.959 123 65 4 8 116 95 216 2.20e-14 70.5
Msa0737240 AT5G49620.2 34.109 129 59 1 3 105 20 148 4.77e-14 70.1
Msa0737240 AT4G37260.1 39.604 101 48 3 11 99 13 112 6.43e-14 69.7
Msa0737240 AT5G17800.1 33.898 118 65 3 5 110 87 203 1.07e-13 68.9
Msa0737240 AT2G37630.1 34.483 116 62 3 11 112 4 119 1.10e-13 69.3
Msa0737240 AT3G55730.1 38.095 105 52 3 7 99 52 155 3.41e-13 68.2
Msa0737240 AT2G23290.1 38.614 101 49 3 11 99 13 112 5.95e-13 67.0
Msa0737240 AT5G67300.1 36.207 116 61 3 11 114 6 120 7.12e-13 66.6
Msa0737240 AT3G29020.1 30.435 138 81 4 6 130 60 195 1.35e-12 65.1
Msa0737240 AT3G29020.2 29.927 137 83 3 6 130 62 197 2.06e-12 65.5
Msa0737240 AT3G12820.2 49.254 67 22 2 45 99 2 68 2.85e-12 63.5
Msa0737240 AT5G59780.2 45.679 81 29 3 40 108 18 95 3.06e-12 63.9
Msa0737240 AT3G46130.4 45.679 81 29 3 40 108 18 95 3.95e-12 63.9
Msa0737240 AT3G50060.1 36.792 106 54 3 11 104 6 110 6.64e-12 63.9
Msa0737240 AT1G17950.1 35.644 101 52 3 14 102 8 107 7.25e-12 63.2
Msa0737240 AT3G09230.1 36.634 101 51 3 11 99 55 154 1.12e-11 63.5
Msa0737240 AT3G46130.3 45.000 80 29 3 41 108 9 85 1.14e-11 62.4
Msa0737240 AT2G39880.1 36.634 101 51 3 11 99 50 149 1.40e-11 63.2
Msa0737240 AT5G02320.1 35.238 105 55 3 9 101 125 228 2.60e-11 62.8
Msa0737240 AT5G02320.2 35.238 105 55 3 9 101 125 228 2.60e-11 62.8
Msa0737240 AT3G09370.1 35.644 101 52 3 11 99 130 229 3.38e-11 62.4
Msa0737240 AT3G09370.2 35.644 101 52 3 11 99 135 234 3.46e-11 62.4
Msa0737240 AT5G02320.3 35.238 105 55 3 9 101 65 168 4.03e-11 62.0
Msa0737240 AT3G09370.3 35.644 101 52 3 11 99 143 242 4.20e-11 62.0
Msa0737240 AT4G32730.5 33.010 103 56 3 9 99 85 186 9.05e-11 61.2
Msa0737240 AT4G32730.4 33.010 103 56 3 9 99 85 186 9.05e-11 61.2
Msa0737240 AT4G32730.3 33.010 103 56 3 9 99 85 186 9.05e-11 61.2
Msa0737240 AT4G32730.2 33.010 103 56 3 9 99 85 186 9.05e-11 61.2
Msa0737240 AT4G32730.1 33.010 103 56 3 9 99 85 186 9.87e-11 61.2

Find 40 sgRNAs with CRISPR-Local

Find 177 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTTGCTTCAAATAAATT+TGG 0.216237 5_1:-54292693 Msa0737240:CDS
CATACTTGGCAGGGCTAAAT+AGG 0.235642 5_1:-54293222 Msa0737240:intron
CCACATTGCACACATAATAT+TGG 0.255465 5_1:+54292570 None:intergenic
CACATTGCACACATAATATT+GGG 0.287887 5_1:+54292571 None:intergenic
ATTACAAGAGCAGAACTATA+AGG 0.315868 5_1:-54292538 Msa0737240:CDS
ACAAGTATGGTGAAGGAAAA+TGG 0.332221 5_1:-54295237 Msa0737240:CDS
CTCGAACATCCTTCTTCAAA+TGG 0.347213 5_1:+54292859 None:intergenic
ATTGGGGCATTACCTAGATT+TGG 0.347306 5_1:+54292588 None:intergenic
CTCATTCACCTTGGTTGAAT+GGG 0.361409 5_1:-54292740 Msa0737240:CDS
AAAGCTTATATTAACAAGTA+TGG 0.371628 5_1:-54295250 Msa0737240:CDS
AAAAGGTTTCTCTGTTGGTT+GGG 0.382557 5_1:+54293158 None:intergenic
ACTACGGTTCCCGATCAAAT+TGG 0.390478 5_1:-54292636 Msa0737240:CDS
ACTCATTCACCTTGGTTGAA+TGG 0.394227 5_1:-54292741 Msa0737240:CDS
TCTAAATCACAACCAAATCT+AGG 0.397333 5_1:-54292600 Msa0737240:CDS
GAAAAGGTTTCTCTGTTGGT+TGG 0.407011 5_1:+54293157 None:intergenic
TGAGCTTTAATAATTTCCTC+AGG 0.423467 5_1:+54292798 None:intergenic
CTCAGAAAAGGTTTCTCTGT+TGG 0.428625 5_1:+54293153 None:intergenic
CTTAGGTTACACAACCTCCT+AGG 0.451405 5_1:-54293112 Msa0737240:CDS
ATCAGCTTCATCCTCAGAAA+AGG 0.475951 5_1:+54293141 None:intergenic
AATGAGTCATCATCATATCT+AGG 0.476554 5_1:+54292663 None:intergenic
TACACAACCTCCTAGGGAAT+AGG 0.485517 5_1:-54293105 Msa0737240:intron
ATGAAGCTGATATGATCCTT+AGG 0.490882 5_1:-54293129 Msa0737240:CDS
TGGAAGCTTACCTATTCCCT+AGG 0.494069 5_1:+54293095 None:intergenic
TCGAACATCCTTCTTCAAAT+GGG 0.502520 5_1:+54292860 None:intergenic
CATTTAATTCCTAAAAGAGC+AGG 0.533333 5_1:-54295214 Msa0737240:intron
ACAATCTCTACCAATTTGAT+CGG 0.538699 5_1:+54292626 None:intergenic
TTGGCACACCCATTTGAAGA+AGG 0.541157 5_1:-54292868 Msa0737240:CDS
CTAGGAGGTTGTGTAACCTA+AGG 0.541369 5_1:+54293113 None:intergenic
TTAGGTTACACAACCTCCTA+GGG 0.562106 5_1:-54293111 Msa0737240:CDS
CAATCTCTACCAATTTGATC+GGG 0.564185 5_1:+54292627 None:intergenic
TATATTAACAAGTATGGTGA+AGG 0.566944 5_1:-54295244 Msa0737240:CDS
GAGCTTTAATAATTTCCTCA+GGG 0.588064 5_1:+54292799 None:intergenic
AAGCTTACCTATTCCCTAGG+AGG 0.610757 5_1:+54293098 None:intergenic
TTATGTTTCCCATTCAACCA+AGG 0.628157 5_1:+54292732 None:intergenic
AAAACGTACGTGGACATCTG+AGG 0.629051 5_1:-54295287 Msa0737240:CDS
TGATGACTCATTAGACACTA+CGG 0.629093 5_1:-54292652 Msa0737240:CDS
CATTTGAAGAAGGATGTTCG+AGG 0.648298 5_1:-54292858 Msa0737240:CDS
ACATTGCACACATAATATTG+GGG 0.657462 5_1:+54292572 None:intergenic
GAGTCATGAGAAAACGTACG+TGG 0.697352 5_1:-54295297 Msa0737240:CDS
CCAATATTATGTGTGCAATG+TGG 0.711847 5_1:-54292570 Msa0737240:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAGAAAATAAAATTATGTA+TGG + chr5_1:54292735-54292754 None:intergenic 10.0%
!!! TGTTTTTTAAGAAATATAAA+TGG - chr5_1:54293190-54293209 Msa0737240:CDS 10.0%
!!! AAAATTAATTTCTTTTTTTC+TGG - chr5_1:54294779-54294798 Msa0737240:intron 10.0%
!!! TATTGTGACAATATATTTTT+AGG - chr5_1:54292756-54292775 Msa0737240:CDS 15.0%
!!! GGTTTTTTAAGAAATATAAA+TGG - chr5_1:54292932-54292951 Msa0737240:intron 15.0%
!! TAAATAACTAAAATATTTGG+TGG + chr5_1:54294036-54294055 None:intergenic 15.0%
!! TGTTAATGCAATAATTTAAA+TGG + chr5_1:54294215-54294234 None:intergenic 15.0%
!!! TTTTGTGAATATAAATCAAA+AGG - chr5_1:54294487-54294506 Msa0737240:intron 15.0%
!!! TTAATTGTATTTATGGTTTT+GGG + chr5_1:54294540-54294559 None:intergenic 15.0%
!! TATGATACATATAATATAGA+TGG - chr5_1:54294889-54294908 Msa0737240:intron 15.0%
!! ATATTTGCTTCAAATAAATT+TGG - chr5_1:54295144-54295163 Msa0737240:intron 15.0%
!! AAAGCTTATATTAACAAGTA+TGG - chr5_1:54292587-54292606 Msa0737240:CDS 20.0%
!!! TGGTAATGCAATAATTTAAA+TGG + chr5_1:54293017-54293036 None:intergenic 20.0%
!! GATATGTTAATGCATAAATA+TGG + chr5_1:54293037-54293056 None:intergenic 20.0%
!! AAATATAAATGGTATGACAT+AGG - chr5_1:54292943-54292962 Msa0737240:intron 20.0%
!! AATATAAATGGTATGACATA+GGG - chr5_1:54292944-54292963 Msa0737240:intron 20.0%
!! TTGTTTAATTGGATATGAAT+TGG + chr5_1:54293476-54293495 None:intergenic 20.0%
!!! TTGTTTGAAGTTTGTTTAAT+TGG + chr5_1:54293487-54293506 None:intergenic 20.0%
!!! AATCAATTTTTATAAGTCAG+AGG + chr5_1:54293863-54293882 None:intergenic 20.0%
!! TCTGACTTATAAAAATTGAT+TGG - chr5_1:54293862-54293881 Msa0737240:intron 20.0%
!! ACTTATAAAAATTGATTGGT+CGG - chr5_1:54293866-54293885 Msa0737240:intron 20.0%
!! GGGTAAATAACTAAAATATT+TGG + chr5_1:54294039-54294058 None:intergenic 20.0%
!! ATTAATGCAATATGTCATAA+GGG + chr5_1:54294152-54294171 None:intergenic 20.0%
!! TATTAATGCAATATGTCATA+AGG + chr5_1:54292955-54292974 None:intergenic 20.0%
!! AACTTCAATCTAAAAAGAAT+AGG + chr5_1:54294409-54294428 None:intergenic 20.0%
!! TATAAATCAAAAGGAAATCA+TGG - chr5_1:54294496-54294515 Msa0737240:intron 20.0%
!!! CTTAATTGTATTTATGGTTT+TGG + chr5_1:54294541-54294560 None:intergenic 20.0%
!! CAAAACCATAAATACAATTA+AGG - chr5_1:54294539-54294558 Msa0737240:intron 20.0%
!! CATATCCTTAATTGTATTTA+TGG + chr5_1:54294547-54294566 None:intergenic 20.0%
!!! AATTTTAATTTGGCTCTATT+TGG + chr5_1:54294765-54294784 None:intergenic 20.0%
!!! ATTAATTTCTTTTTTTCTGG+AGG - chr5_1:54294782-54294801 Msa0737240:intron 20.0%
!!! TTAATTTCTTTTTTTCTGGA+GGG - chr5_1:54294783-54294802 Msa0737240:intron 20.0%
! TATATTAACAAGTATGGTGA+AGG - chr5_1:54292593-54292612 Msa0737240:CDS 25.0%
!!! AGTTGTTAGTTTGATTGTTT+TGG + chr5_1:54292801-54292820 None:intergenic 25.0%
! TGAAATTGAATCTAATTCGA+TGG + chr5_1:54292870-54292889 None:intergenic 25.0%
!! AAATGGTGAATTTTTCACTA+AGG + chr5_1:54293000-54293019 None:intergenic 25.0%
!! TAACATATCTTGTTTGTCTT+TGG - chr5_1:54293048-54293067 Msa0737240:intron 25.0%
! TGAAATTGAATCTAATTCGA+TGG + chr5_1:54292870-54292889 None:intergenic 25.0%
! CATTTAACATATTCATATCC+AGG + chr5_1:54293293-54293312 None:intergenic 25.0%
! CTGGATATGAATATGTTAAA+TGG - chr5_1:54293291-54293310 Msa0737240:intron 25.0%
!!! TGCTGAAGTTGTTTTTATTA+AGG - chr5_1:54293327-54293346 Msa0737240:intron 25.0%
! AATGAAAGGAACTAAATGAA+CGG + chr5_1:54293360-54293379 None:intergenic 25.0%
! TTAAAATGACAAACCATACA+CGG - chr5_1:54293692-54293711 Msa0737240:intron 25.0%
!! CTTATAAAAATTGATTGGTC+GGG - chr5_1:54293867-54293886 Msa0737240:intron 25.0%
!! TTATAAAAATTGATTGGTCG+GGG - chr5_1:54293868-54293887 Msa0737240:intron 25.0%
! AATATGGACCCTAAAATTAA+GGG + chr5_1:54294123-54294142 None:intergenic 25.0%
! TAATATGGACCCTAAAATTA+AGG + chr5_1:54294124-54294143 None:intergenic 25.0%
!!! TTAATTTTAGGGTCCATATT+AGG - chr5_1:54294123-54294142 Msa0737240:intron 25.0%
!!! TAATTTTAGGGTCCATATTA+GGG - chr5_1:54294124-54294143 Msa0737240:intron 25.0%
! TTAATGCAATATGTCATAAG+GGG + chr5_1:54294151-54294170 None:intergenic 25.0%
!! AAATGGTGAATTTTTCACTA+AGG + chr5_1:54293000-54293019 None:intergenic 25.0%
!! TAACATATCTTGTTTGTCTT+TGG - chr5_1:54293048-54293067 Msa0737240:intron 25.0%
! AAATATTTGGCTAACATACT+TGG - chr5_1:54294601-54294620 Msa0737240:intron 25.0%
! CTAATGATGTGAAAAACTAT+TGG - chr5_1:54294950-54294969 Msa0737240:intron 25.0%
!! AGAACTATAAGGTTTTCAAA+TGG - chr5_1:54295310-54295329 Msa0737240:CDS 25.0%
CATTTAATTCCTAAAAGAGC+AGG - chr5_1:54292623-54292642 Msa0737240:CDS 30.0%
! TTCATTATACCTGCTCTTTT+AGG + chr5_1:54292635-54292654 None:intergenic 30.0%
TGTTTATTCTACTGCGTATT+TGG - chr5_1:54292658-54292677 Msa0737240:CDS 30.0%
TTGAATCTAATTCGATGGTT+TGG + chr5_1:54292865-54292884 None:intergenic 30.0%
TTGAATCTAATTCGATGGTT+TGG + chr5_1:54292865-54292884 None:intergenic 30.0%
ATTGGATATGAATTGGATAG+TGG + chr5_1:54293469-54293488 None:intergenic 30.0%
AATGAAATGAGAGAGAAGAA+TGG + chr5_1:54293526-54293545 None:intergenic 30.0%
ACATTATCCTTTAAGCCAAA+AGG + chr5_1:54293657-54293676 None:intergenic 30.0%
GGCTTAAAGGATAATGTTAA+AGG - chr5_1:54293660-54293679 Msa0737240:intron 30.0%
CAAGTTCAGATGTATTAACA+GGG - chr5_1:54293781-54293800 Msa0737240:intron 30.0%
! TATAAAAATTGATTGGTCGG+GGG - chr5_1:54293869-54293888 Msa0737240:intron 30.0%
!! ACCTTCTGACAATCATTTTT+GGG + chr5_1:54294059-54294078 None:intergenic 30.0%
! AACCTTCTGACAATCATTTT+TGG + chr5_1:54294060-54294079 None:intergenic 30.0%
!!! AATTTTAGGGTCCATATTAG+GGG - chr5_1:54294125-54294144 Msa0737240:intron 30.0%
!! GTTGGTAGCATGAATAATAT+TGG - chr5_1:54294292-54294311 Msa0737240:intron 30.0%
! GAGCTTTAATAATTTCCTCA+GGG + chr5_1:54295041-54295060 None:intergenic 30.0%
! TGAGCTTTAATAATTTCCTC+AGG + chr5_1:54295042-54295061 None:intergenic 30.0%
! GAATGAGTTGAAAAAGTTAG+TGG + chr5_1:54295084-54295103 None:intergenic 30.0%
AATGAGTCATCATCATATCT+AGG + chr5_1:54295177-54295196 None:intergenic 30.0%
ACAATCTCTACCAATTTGAT+CGG + chr5_1:54295214-54295233 None:intergenic 30.0%
TCTAAATCACAACCAAATCT+AGG - chr5_1:54295237-54295256 Msa0737240:CDS 30.0%
ACATTGCACACATAATATTG+GGG + chr5_1:54295268-54295287 None:intergenic 30.0%
CACATTGCACACATAATATT+GGG + chr5_1:54295269-54295288 None:intergenic 30.0%
ATTACAAGAGCAGAACTATA+AGG - chr5_1:54295299-54295318 Msa0737240:CDS 30.0%
ACAAGTATGGTGAAGGAAAA+TGG - chr5_1:54292600-54292619 Msa0737240:CDS 35.0%
TGAAAAGTAATGAAACCACC+AGG - chr5_1:54292820-54292839 Msa0737240:CDS 35.0%
GAAAAGTAATGAAACCACCA+GGG - chr5_1:54292821-54292840 Msa0737240:CDS 35.0%
AAAAGTAATGAAACCACCAG+GGG - chr5_1:54292822-54292841 Msa0737240:CDS 35.0%
TCTCAAGTAATGAAACCACT+AGG - chr5_1:54293078-54293097 Msa0737240:intron 35.0%
CTCAAGTAATGAAACCACTA+GGG - chr5_1:54293079-54293098 Msa0737240:intron 35.0%
TCAAGTAATGAAACCACTAG+GGG - chr5_1:54293080-54293099 Msa0737240:intron 35.0%
!!! TACTTTTGGGGTCCATATTA+GGG + chr5_1:54293231-54293250 None:intergenic 35.0%
!!! TTACTTTTGGGGTCCATATT+AGG + chr5_1:54293232-54293251 None:intergenic 35.0%
AATATGGACCCCAAAAGTAA+AGG - chr5_1:54293232-54293251 Msa0737240:intron 35.0%
!! ATCGATGGACCTTTACTTTT+GGG + chr5_1:54293244-54293263 None:intergenic 35.0%
GGCACAAGTATATGAATGAA+AGG + chr5_1:54293374-54293393 None:intergenic 35.0%
AAATGAGAGAGAAGAATGGA+AGG + chr5_1:54293522-54293541 None:intergenic 35.0%
!! TGTGTTTTTCGATACTGTGT+TGG + chr5_1:54293621-54293640 None:intergenic 35.0%
TGATAAGTTATCACCGTGTA+TGG + chr5_1:54293708-54293727 None:intergenic 35.0%
CCTGTTAATACATCTGAACT+TGG + chr5_1:54293783-54293802 None:intergenic 35.0%
CCAAGTTCAGATGTATTAAC+AGG - chr5_1:54293780-54293799 Msa0737240:intron 35.0%
ACCACTTCAATACAAGAAGT+GGG + chr5_1:54293908-54293927 None:intergenic 35.0%
TACCACTTCAATACAAGAAG+TGG + chr5_1:54293909-54293928 None:intergenic 35.0%
ACCCAAAAATGATTGTCAGA+AGG - chr5_1:54294055-54294074 Msa0737240:intron 35.0%
AATGATTGTCAGAAGGTTAC+TGG - chr5_1:54294062-54294081 Msa0737240:intron 35.0%
! AAAAGGTTTCTCTGTTGGTT+GGG + chr5_1:54294682-54294701 None:intergenic 35.0%
ATGAAGCTGATATGATCCTT+AGG - chr5_1:54294708-54294727 Msa0737240:intron 35.0%
TCGAACATCCTTCTTCAAAT+GGG + chr5_1:54294980-54294999 None:intergenic 35.0%
GAAAGAAAAAGATAACCCTG+AGG - chr5_1:54295023-54295042 Msa0737240:intron 35.0%
!!! CTTTTTCAACTCATTCACCT+TGG - chr5_1:54295088-54295107 Msa0737240:intron 35.0%
TTATGTTTCCCATTCAACCA+AGG + chr5_1:54295108-54295127 None:intergenic 35.0%
TGATGACTCATTAGACACTA+CGG - chr5_1:54295185-54295204 Msa0737240:intron 35.0%
CAATCTCTACCAATTTGATC+GGG + chr5_1:54295213-54295232 None:intergenic 35.0%
CCACATTGCACACATAATAT+TGG + chr5_1:54295270-54295289 None:intergenic 35.0%
CCAATATTATGTGTGCAATG+TGG - chr5_1:54295267-54295286 Msa0737240:CDS 35.0%
TGGTTTCATTACTTGAGAGC+TGG + chr5_1:54293076-54293095 None:intergenic 40.0%
TAATGAAACCACTAGGGGTT+AGG - chr5_1:54293085-54293104 Msa0737240:intron 40.0%
!!! ACTTTTGGGGTCCATATTAG+GGG + chr5_1:54293230-54293249 None:intergenic 40.0%
!! TCGATGGACCTTTACTTTTG+GGG + chr5_1:54293243-54293262 None:intergenic 40.0%
! CATCGATGGACCTTTACTTT+TGG + chr5_1:54293245-54293264 None:intergenic 40.0%
CAAAAGTAAAGGTCCATCGA+TGG - chr5_1:54293243-54293262 Msa0737240:intron 40.0%
CATTTAATGAGGTCCATCGA+TGG + chr5_1:54293259-54293278 None:intergenic 40.0%
CTGTAGCAGGTCATTTAATG+AGG + chr5_1:54293270-54293289 None:intergenic 40.0%
ACTCATCCTCGTTCTAATAG+AGG + chr5_1:54293395-54293414 None:intergenic 40.0%
TGGCTGAAAATCTGGGAAAT+CGG + chr5_1:54293601-54293620 None:intergenic 40.0%
!! ACTGTGTTGGCTGAAAATCT+GGG + chr5_1:54293608-54293627 None:intergenic 40.0%
!! TACTGTGTTGGCTGAAAATC+TGG + chr5_1:54293609-54293628 None:intergenic 40.0%
ACCCACTTCTTGTATTGAAG+TGG - chr5_1:54293904-54293923 Msa0737240:intron 40.0%
TAAAATTAAGGGACCAGCTG+TGG + chr5_1:54294112-54294131 None:intergenic 40.0%
! ACAGCTGGTCCCTTAATTTT+AGG - chr5_1:54294111-54294130 Msa0737240:intron 40.0%
! CAGCTGGTCCCTTAATTTTA+GGG - chr5_1:54294112-54294131 Msa0737240:intron 40.0%
!!! TATGGTTTTGGGATGAATCG+TGG + chr5_1:54294529-54294548 None:intergenic 40.0%
ATTTGGCTAACATACTTGGC+AGG - chr5_1:54294605-54294624 Msa0737240:intron 40.0%
TTTGGCTAACATACTTGGCA+GGG - chr5_1:54294606-54294625 Msa0737240:intron 40.0%
GTCGAAAAAGTTGCAGATTG+AGG - chr5_1:54294639-54294658 Msa0737240:intron 40.0%
GAAAAAGTTGCAGATTGAGG+TGG - chr5_1:54294642-54294661 Msa0737240:intron 40.0%
GAAAAGGTTTCTCTGTTGGT+TGG + chr5_1:54294683-54294702 None:intergenic 40.0%
CTCAGAAAAGGTTTCTCTGT+TGG + chr5_1:54294687-54294706 None:intergenic 40.0%
! CAACAGAGAAACCTTTTCTG+AGG - chr5_1:54294685-54294704 Msa0737240:intron 40.0%
ATCAGCTTCATCCTCAGAAA+AGG + chr5_1:54294699-54294718 None:intergenic 40.0%
TTAGGTTACACAACCTCCTA+GGG - chr5_1:54294726-54294745 Msa0737240:intron 40.0%
CTCGAACATCCTTCTTCAAA+TGG + chr5_1:54294981-54295000 None:intergenic 40.0%
CATTTGAAGAAGGATGTTCG+AGG - chr5_1:54294979-54294998 Msa0737240:intron 40.0%
! GTTGAAAAAGTTAGTGGACG+AGG + chr5_1:54295078-54295097 None:intergenic 40.0%
ACTCATTCACCTTGGTTGAA+TGG - chr5_1:54295096-54295115 Msa0737240:intron 40.0%
CTCATTCACCTTGGTTGAAT+GGG - chr5_1:54295097-54295116 Msa0737240:intron 40.0%
! ATTGGGGCATTACCTAGATT+TGG + chr5_1:54295252-54295271 None:intergenic 40.0%
GAGTCATGAGAAAACGTACG+TGG - chr5_1:54292540-54292559 Msa0737240:CDS 45.0%
AAAACGTACGTGGACATCTG+AGG - chr5_1:54292550-54292569 Msa0737240:CDS 45.0%
TAATGAAACCACCAGGGGTT+AGG - chr5_1:54292827-54292846 Msa0737240:CDS 45.0%
ATATGTTCACTCCTAACCCC+TGG + chr5_1:54292841-54292860 None:intergenic 45.0%
TTAAATGACCTGCTACAGCC+TGG - chr5_1:54293272-54293291 Msa0737240:intron 45.0%
ATTCATATCCAGGCTGTAGC+AGG + chr5_1:54293283-54293302 None:intergenic 45.0%
CTTGTGCCTCTATTAGAACG+AGG - chr5_1:54293386-54293405 Msa0737240:intron 45.0%
GGAAATCGGAACAGATAGCA+CGG + chr5_1:54293587-54293606 None:intergenic 45.0%
! CACTCATACGCAATGCCTTT+TGG - chr5_1:54293639-54293658 Msa0737240:intron 45.0%
!!! CGCAATGCCTTTTGGCTTAA+AGG - chr5_1:54293647-54293666 Msa0737240:intron 45.0%
ATTGGTCGGGGGCAAAAAAA+TGG - chr5_1:54293880-54293899 Msa0737240:intron 45.0%
CTATAGCCAGTCATACTGTG+AGG - chr5_1:54294085-54294104 Msa0737240:intron 45.0%
CATACTTGGCAGGGCTAAAT+AGG - chr5_1:54294615-54294634 Msa0737240:intron 45.0%
CTAGGAGGTTGTGTAACCTA+AGG + chr5_1:54294727-54294746 None:intergenic 45.0%
CTTAGGTTACACAACCTCCT+AGG - chr5_1:54294725-54294744 Msa0737240:intron 45.0%
TACACAACCTCCTAGGGAAT+AGG - chr5_1:54294732-54294751 Msa0737240:intron 45.0%
AAGCTTACCTATTCCCTAGG+AGG + chr5_1:54294742-54294761 None:intergenic 45.0%
TGGAAGCTTACCTATTCCCT+AGG + chr5_1:54294745-54294764 None:intergenic 45.0%
ATTGCTGCAAGACTTCGTTC+AGG - chr5_1:54294918-54294937 Msa0737240:intron 45.0%
TTGCTGCAAGACTTCGTTCA+GGG - chr5_1:54294919-54294938 Msa0737240:intron 45.0%
TTGGCACACCCATTTGAAGA+AGG - chr5_1:54294969-54294988 Msa0737240:intron 45.0%
ACTACGGTTCCCGATCAAAT+TGG - chr5_1:54295201-54295220 Msa0737240:intron 45.0%
!!! AACAATATTTATAAATTTTA+AGG - chr5_1:54292911-54292930 Msa0737240:intron 5.0%
!! TAAAAAAAATATTTATTTGA+TGG - chr5_1:54294319-54294338 Msa0737240:intron 5.0%
!! ATATATATTATCAAAATATT+TGG - chr5_1:54294588-54294607 Msa0737240:intron 5.0%
!!! AAAAGAAATTAATTTTAATT+TGG + chr5_1:54294775-54294794 None:intergenic 5.0%
TGTTCACTCCTAACCCCTAG+TGG + chr5_1:54293096-54293115 None:intergenic 50.0%
GACATAGGGAGCCCCTAATA+TGG - chr5_1:54293216-54293235 Msa0737240:intron 50.0%
TGTGGACCTCACAGTATGAC+TGG + chr5_1:54294094-54294113 None:intergenic 50.0%
GTCATAAGGGGCCCCTAATA+TGG + chr5_1:54294139-54294158 None:intergenic 50.0%
ACCAGCTCTCTCTTCTTGAG+AGG - chr5_1:54294270-54294289 Msa0737240:intron 50.0%
ACCTCTCAAGAAGAGAGAGC+TGG + chr5_1:54294274-54294293 None:intergenic 50.0%
GCTCTCTCTTCTTGAGAGGT+TGG - chr5_1:54294274-54294293 Msa0737240:intron 50.0%
TGTTCACTCCTAACCCCTGG+TGG + chr5_1:54292838-54292857 None:intergenic 55.0%
CATACTGTGAGGTCCACAGC+TGG - chr5_1:54294096-54294115 Msa0737240:intron 55.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 54292521 54295338 54292521 ID=Msa0737240;Name=Msa0737240
chr5_1 mRNA 54292521 54295338 54292521 ID=Msa0737240-mRNA-1;Parent=Msa0737240;Name=Msa0737240-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|0|0.33|3|0|214
chr5_1 exon 54295215 54295338 54295215 ID=Msa0737240-mRNA-1:exon:15263;Parent=Msa0737240-mRNA-1
chr5_1 exon 54293106 54293232 54293106 ID=Msa0737240-mRNA-1:exon:15262;Parent=Msa0737240-mRNA-1
chr5_1 exon 54292521 54292914 54292521 ID=Msa0737240-mRNA-1:exon:15261;Parent=Msa0737240-mRNA-1
chr5_1 CDS 54295215 54295338 54295215 ID=Msa0737240-mRNA-1:cds;Parent=Msa0737240-mRNA-1
chr5_1 CDS 54293106 54293232 54293106 ID=Msa0737240-mRNA-1:cds;Parent=Msa0737240-mRNA-1
chr5_1 CDS 54292521 54292914 54292521 ID=Msa0737240-mRNA-1:cds;Parent=Msa0737240-mRNA-1
Gene Sequence

>Msa0737240

ATGTGTATGGAGAATAGCAGAGTCATGAGAAAACGTACGTGGACATCTGAGGAAGACAAGTTACTCAAAGCTTATATTAACAAGTATGGTGAAGGAAAATGGCATTTAATTCCTAAAAGAGCAGGGCTAAATAGGTGTCGAAAAAGTTGCAGATTGAGGTGGTTAAATTATTTAAACCCAACCAACAGAGAAACCTTTTCTGAGGATGAAGCTGATATGATCCTTAGGTTACACAACCTCCTAGGGAATAGAACAGCTAATGATGTGAAAAACTATTGGCACACCCATTTGAAGAAGGATGTTCGAGGAGCAAAAGAAAAGAAAGAAAAGAAAGAAAAAGATAACCCTGAGGAAATTATTAAAGCTCATGAAGTTATTAAACCTCGTCCACTAACTTTTTCAACTCATTCACCTTGGTTGAATGGGAAACATAATTTTGTGACACATTCAATATTTGCTTCAAATAAATTTGGTAATGTTCCTAGATATGATGATGACTCATTAGACACTACGGTTCCCGATCAAATTGGTAGAGATTGTGCTTCTAAATCACAACCAAATCTAGGTAATGCCCCAATATTATGTGTGCAATGTGGTTGCTCTTCATTACAAGAGCAGAACTATAAGGTTTTCAAATGGTTATGA
Protein sequence

>Msa0737240

MCMENSRVMRKRTWTSEEDKLLKAYINKYGEGKWHLIPKRAGLNRCRKSCRLRWLNYLNPTNRETFSEDEADMILRLHNLLGNRTANDVKNYWHTHLKKDVRGAKEKKEKKEKDNPEEIIKAHEVIKPRPLTFSTHSPWLNGKHNFVTHSIFASNKFGNVPRYDDDSLDTTVPDQIGRDCASKSQPNLGNAPILCVQCGCSSLQEQNYKVFKWL*