Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737300 | XP_003616375.2 | 95.820 | 311 | 8 | 2 | 1 | 306 | 1 | 311 | 0.0 | 609 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737300 | sp|Q9FJ00|RSL1_ARATH | 54.497 | 189 | 64 | 5 | 125 | 306 | 121 | 294 | 7.32e-54 | 181 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737300 | G7K1Y5 | 95.820 | 311 | 8 | 2 | 1 | 306 | 1 | 311 | 0.0 | 609 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0737300 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737300 | MtrunA17_Chr5g0435021 | 95.820 | 311 | 8 | 2 | 1 | 306 | 1 | 311 | 0.0 | 609 |
| Msa0737300 | MtrunA17_Chr5g0393721 | 62.500 | 72 | 27 | 0 | 210 | 281 | 221 | 292 | 2.48e-25 | 103 |
| Msa0737300 | MtrunA17_Chr1g0207311 | 50.000 | 94 | 41 | 2 | 192 | 281 | 173 | 264 | 2.05e-24 | 100 |
| Msa0737300 | MtrunA17_Chr1g0207301 | 70.000 | 60 | 18 | 0 | 222 | 281 | 297 | 356 | 3.33e-23 | 98.2 |
| Msa0737300 | MtrunA17_Chr3g0134741 | 58.571 | 70 | 29 | 0 | 212 | 281 | 228 | 297 | 1.41e-22 | 95.5 |
| Msa0737300 | MtrunA17_Chr1g0152651 | 62.903 | 62 | 23 | 0 | 220 | 281 | 281 | 342 | 2.16e-22 | 95.9 |
| Msa0737300 | MtrunA17_Chr8g0384141 | 53.165 | 79 | 35 | 2 | 197 | 275 | 100 | 176 | 3.86e-19 | 85.1 |
| Msa0737300 | MtrunA17_Chr3g0134001 | 62.500 | 56 | 21 | 0 | 220 | 275 | 178 | 233 | 2.31e-18 | 83.2 |
| Msa0737300 | MtrunA17_Chr7g0243041 | 66.038 | 53 | 18 | 0 | 220 | 272 | 33 | 85 | 8.57e-18 | 79.0 |
| Msa0737300 | MtrunA17_Chr4g0074161 | 47.674 | 86 | 40 | 2 | 195 | 276 | 185 | 269 | 5.37e-17 | 80.9 |
| Msa0737300 | MtrunA17_Chr1g0190731 | 50.769 | 65 | 32 | 0 | 212 | 276 | 192 | 256 | 1.76e-14 | 73.2 |
| Msa0737300 | MtrunA17_Chr5g0402161 | 55.696 | 79 | 33 | 1 | 197 | 275 | 123 | 199 | 3.77e-11 | 62.4 |
| Msa0737300 | MtrunA17_Chr1g0153241 | 37.805 | 82 | 46 | 1 | 194 | 275 | 71 | 147 | 7.56e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737300 | AT5G37800.1 | 54.497 | 189 | 64 | 5 | 125 | 306 | 121 | 294 | 7.44e-55 | 181 |
| Msa0737300 | AT1G66470.1 | 63.946 | 147 | 46 | 2 | 158 | 304 | 147 | 286 | 1.13e-52 | 175 |
| Msa0737300 | AT2G14760.1 | 60.000 | 70 | 28 | 0 | 212 | 281 | 236 | 305 | 4.86e-24 | 100 |
| Msa0737300 | AT4G33880.1 | 60.000 | 70 | 28 | 0 | 212 | 281 | 265 | 334 | 9.15e-24 | 99.8 |
| Msa0737300 | AT1G27740.1 | 54.430 | 79 | 36 | 0 | 203 | 281 | 157 | 235 | 1.91e-23 | 97.1 |
| Msa0737300 | AT5G43175.1 | 58.442 | 77 | 30 | 1 | 207 | 281 | 124 | 200 | 2.21e-23 | 96.3 |
| Msa0737300 | AT2G14760.3 | 50.602 | 83 | 28 | 1 | 212 | 281 | 236 | 318 | 1.60e-20 | 90.5 |
| Msa0737300 | AT5G01305.1 | 57.576 | 66 | 28 | 0 | 207 | 272 | 31 | 96 | 4.84e-20 | 85.9 |
| Msa0737300 | AT2G24260.2 | 50.000 | 86 | 39 | 1 | 212 | 297 | 34 | 115 | 1.90e-19 | 85.9 |
| Msa0737300 | AT2G24260.1 | 50.000 | 86 | 39 | 1 | 212 | 297 | 137 | 218 | 1.12e-18 | 85.5 |
| Msa0737300 | AT4G30980.1 | 40.678 | 118 | 58 | 3 | 179 | 296 | 104 | 209 | 1.67e-18 | 84.7 |
| Msa0737300 | AT4G30980.2 | 40.678 | 118 | 58 | 3 | 179 | 296 | 152 | 257 | 2.65e-18 | 84.7 |
| Msa0737300 | AT4G00120.1 | 43.820 | 89 | 48 | 2 | 187 | 275 | 88 | 174 | 1.09e-16 | 77.4 |
| Msa0737300 | AT5G58010.1 | 50.000 | 72 | 36 | 0 | 205 | 276 | 91 | 162 | 1.18e-16 | 79.0 |
| Msa0737300 | AT3G21330.1 | 58.929 | 56 | 23 | 0 | 220 | 275 | 276 | 331 | 7.04e-16 | 77.8 |
| Msa0737300 | AT3G50330.1 | 52.222 | 90 | 39 | 2 | 197 | 286 | 105 | 190 | 1.33e-11 | 63.5 |
| Msa0737300 | AT3G19500.2 | 34.351 | 131 | 67 | 4 | 159 | 277 | 79 | 202 | 1.60e-11 | 63.5 |
| Msa0737300 | AT3G19500.1 | 34.351 | 131 | 67 | 4 | 159 | 277 | 79 | 202 | 2.88e-11 | 63.2 |
| Msa0737300 | AT1G09530.3 | 49.020 | 51 | 26 | 0 | 226 | 276 | 350 | 400 | 9.90e-11 | 62.8 |
| Msa0737300 | AT1G09530.2 | 49.020 | 51 | 26 | 0 | 226 | 276 | 350 | 400 | 9.90e-11 | 62.8 |
| Msa0737300 | AT1G09530.5 | 49.020 | 51 | 26 | 0 | 226 | 276 | 350 | 400 | 9.90e-11 | 62.8 |
| Msa0737300 | AT1G09530.1 | 49.020 | 51 | 26 | 0 | 226 | 276 | 350 | 400 | 9.90e-11 | 62.8 |
| Msa0737300 | AT1G09530.4 | 49.020 | 51 | 26 | 0 | 226 | 276 | 350 | 400 | 9.90e-11 | 62.8 |
| Msa0737300 | AT1G09530.6 | 49.020 | 51 | 26 | 0 | 226 | 276 | 350 | 400 | 9.90e-11 | 62.8 |
Find 42 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCAGCTGTGCATGGCTTCT+TGG | 0.232597 | 5_1:-54483692 | None:intergenic |
| TGTTGGCAGCTGATGAATTT+TGG | 0.271276 | 5_1:+54484283 | Msa0737300:CDS |
| CTTGAAGAAGCGATCTTCTA+TGG | 0.360051 | 5_1:+54483357 | Msa0737300:CDS |
| GATGGTTCACAAAGCACTAA+TGG | 0.383807 | 5_1:+54482902 | Msa0737300:CDS |
| CGTTTGGCACAAGCTCTTGT+AGG | 0.385412 | 5_1:-54483903 | None:intergenic |
| TTGTTGCAAATTATTCTCAT+TGG | 0.405551 | 5_1:-54483110 | None:intergenic |
| TTCTTACTTGCAGCTGTGCA+TGG | 0.415931 | 5_1:-54483700 | None:intergenic |
| AAATCTACCTTGGAACCGTT+TGG | 0.425715 | 5_1:-54483919 | None:intergenic |
| TCGCCATCACAAGGAACATT+TGG | 0.425857 | 5_1:-54483286 | None:intergenic |
| ACCTTGGCAGCAACACTTTG+AGG | 0.436246 | 5_1:-54483754 | None:intergenic |
| AGTGTAAAAGATAAGCAAAA+TGG | 0.439079 | 5_1:+54483232 | Msa0737300:CDS |
| TCTCCTACTCTATGCAGAAA+AGG | 0.440008 | 5_1:+54482953 | Msa0737300:CDS |
| TGTGCATGGCTTCTTGGCAT+TGG | 0.449331 | 5_1:-54483686 | None:intergenic |
| AGCAACACTTTGAGGATCCT+TGG | 0.463727 | 5_1:-54483746 | None:intergenic |
| CTCCTACTCTATGCAGAAAA+GGG | 0.464840 | 5_1:+54482954 | Msa0737300:CDS |
| TCCTCAAAGTGTTGCTGCCA+AGG | 0.467735 | 5_1:+54483753 | Msa0737300:CDS |
| GAAACTTCAAGTGGTAGCTA+TGG | 0.482106 | 5_1:+54483196 | Msa0737300:CDS |
| CATGGCTTCTTGGCATTGGT+AGG | 0.494730 | 5_1:-54483682 | None:intergenic |
| ACAATGTAGAATGTTGTTGT+TGG | 0.495112 | 5_1:-54482810 | None:intergenic |
| ATGAGAATAATTTGCAACAA+TGG | 0.519375 | 5_1:+54483113 | Msa0737300:CDS |
| GAGTCTTTGATTAATTTCAA+AGG | 0.522051 | 5_1:+54483013 | Msa0737300:CDS |
| GGTTGATTTGGTTACCATGT+TGG | 0.524353 | 5_1:+54484055 | Msa0737300:intron |
| ACAAATTTGTGCATGGTGCA+AGG | 0.524955 | 5_1:+54483160 | Msa0737300:CDS |
| CTACAAGAGCTTGTGCCAAA+CGG | 0.536984 | 5_1:+54483904 | Msa0737300:CDS |
| ACACTTTGAGGATCCTTGGA+TGG | 0.541193 | 5_1:-54483742 | None:intergenic |
| GTTTCTTCAGTTGCAAGTGA+AGG | 0.554782 | 5_1:+54484100 | Msa0737300:CDS |
| TCATCGTCGTCGCCATCACA+AGG | 0.568888 | 5_1:-54483295 | None:intergenic |
| GGTGGAAAAGCTCCTGACAT+TGG | 0.579618 | 5_1:+54484315 | Msa0737300:CDS |
| AGAAGATCGCTTCTTCAAGA+CGG | 0.585959 | 5_1:-54483353 | None:intergenic |
| GAACCAAATGTTCCTTGTGA+TGG | 0.587375 | 5_1:+54483283 | Msa0737300:CDS |
| GCTTGTGCCAAACGGTTCCA+AGG | 0.593716 | 5_1:+54483912 | Msa0737300:CDS |
| ACTAATTGCTTTCTCCAACA+TGG | 0.596287 | 5_1:-54484069 | None:intergenic |
| AATAGCTTTGAAACTTCAAG+TGG | 0.597044 | 5_1:+54483187 | Msa0737300:CDS |
| TAGAGTAGGAGAATTTGTAA+TGG | 0.598886 | 5_1:-54482942 | None:intergenic |
| AAGTAACACAAATTTGTGCA+TGG | 0.601950 | 5_1:+54483153 | Msa0737300:CDS |
| TGATAGCTTAATAAAAGAGT+CGG | 0.604203 | 5_1:+54483318 | Msa0737300:CDS |
| ACATAAGTCAAATCCATCCA+AGG | 0.604373 | 5_1:+54483729 | Msa0737300:CDS |
| TCTATGATTGAAGAAGAAGA+TGG | 0.607243 | 5_1:+54482884 | Msa0737300:CDS |
| CAAAATGGTGAAAGTTCATG+TGG | 0.608439 | 5_1:+54483247 | Msa0737300:CDS |
| ATGGTGAAAGTTCATGTGGA+TGG | 0.618317 | 5_1:+54483251 | Msa0737300:CDS |
| GAAGAGAGAGAATAAGTGAG+AGG | 0.626364 | 5_1:+54483872 | Msa0737300:CDS |
| TATTACAACAATCTCATGCA+AGG | 0.632712 | 5_1:+54483046 | Msa0737300:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAATAAAATTAA+CGG | - | chr5_1:54483560-54483579 | None:intergenic | 0.0% |
| !! | AAAAAAATTAATAAAATTAA+CGG | - | chr5_1:54483560-54483579 | None:intergenic | 0.0% |
| !! | TGATAAATTAAAAATTGTTT+AGG | + | chr5_1:54484191-54484210 | Msa0737300:intron | 10.0% |
| !! | GATAAATTAAAAATTGTTTA+GGG | + | chr5_1:54484192-54484211 | Msa0737300:intron | 10.0% |
| !! | TGATAAATTAAAAATTGTTT+AGG | + | chr5_1:54484191-54484210 | Msa0737300:intron | 10.0% |
| !! | GATAAATTAAAAATTGTTTA+GGG | + | chr5_1:54484192-54484211 | Msa0737300:intron | 10.0% |
| !! | CAAATTATTAGAACATATTT+AGG | + | chr5_1:54483580-54483599 | Msa0737300:intron | 15.0% |
| !!! | ACTAGTTATTATATTTTTCT+TGG | + | chr5_1:54484215-54484234 | Msa0737300:intron | 15.0% |
| !!! | TTTTGTTATATATTTGTTCA+TGG | + | chr5_1:54484254-54484273 | Msa0737300:intron | 15.0% |
| !! | CAAATTATTAGAACATATTT+AGG | + | chr5_1:54483580-54483599 | Msa0737300:intron | 15.0% |
| !!! | ACTAGTTATTATATTTTTCT+TGG | + | chr5_1:54484215-54484234 | Msa0737300:intron | 15.0% |
| !!! | TTTTGTTATATATTTGTTCA+TGG | + | chr5_1:54484254-54484273 | Msa0737300:intron | 15.0% |
| !!! | ATCTTTTACACTATTGAATA+TGG | - | chr5_1:54483224-54483243 | None:intergenic | 20.0% |
| !!! | TAGAGTCATTATTTTATATC+AGG | + | chr5_1:54483429-54483448 | Msa0737300:intron | 20.0% |
| !! | TTAAGTTCTCAAAAAACTAT+AGG | - | chr5_1:54483606-54483625 | None:intergenic | 20.0% |
| !! | AGATAAGATTTGTGTTTATA+GGG | + | chr5_1:54483646-54483665 | Msa0737300:intron | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | - | chr5_1:54483790-54483809 | None:intergenic | 20.0% |
| !! | AATCAAAACATGATATAACT+TGG | - | chr5_1:54483791-54483810 | None:intergenic | 20.0% |
| !! | GTAAAAATTTACAAAGACTT+TGG | - | chr5_1:54483996-54484015 | None:intergenic | 20.0% |
| !!! | ATCTTTTACACTATTGAATA+TGG | - | chr5_1:54483224-54483243 | None:intergenic | 20.0% |
| !!! | TAGAGTCATTATTTTATATC+AGG | + | chr5_1:54483429-54483448 | Msa0737300:intron | 20.0% |
| !! | TTAAGTTCTCAAAAAACTAT+AGG | - | chr5_1:54483606-54483625 | None:intergenic | 20.0% |
| !! | AGATAAGATTTGTGTTTATA+GGG | + | chr5_1:54483646-54483665 | Msa0737300:intron | 20.0% |
| !! | ATCAAAACATGATATAACTT+GGG | - | chr5_1:54483790-54483809 | None:intergenic | 20.0% |
| !! | AATCAAAACATGATATAACT+TGG | - | chr5_1:54483791-54483810 | None:intergenic | 20.0% |
| !! | GTAAAAATTTACAAAGACTT+TGG | - | chr5_1:54483996-54484015 | None:intergenic | 20.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5_1:54483013-54483032 | Msa0737300:CDS | 25.0% |
| ! | TTGTTGCAAATTATTCTCAT+TGG | - | chr5_1:54483113-54483132 | None:intergenic | 25.0% |
| !! | ATGAGAATAATTTGCAACAA+TGG | + | chr5_1:54483113-54483132 | Msa0737300:CDS | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | - | chr5_1:54483151-54483170 | None:intergenic | 25.0% |
| ! | AGTGTAAAAGATAAGCAAAA+TGG | + | chr5_1:54483232-54483251 | Msa0737300:CDS | 25.0% |
| ! | TGATAGCTTAATAAAAGAGT+CGG | + | chr5_1:54483318-54483337 | Msa0737300:CDS | 25.0% |
| ! | ATGACTCTAAACATCATAAA+TGG | - | chr5_1:54483418-54483437 | None:intergenic | 25.0% |
| ! | GAGAACTTAATGAAATAGAA+TGG | + | chr5_1:54483616-54483635 | Msa0737300:intron | 25.0% |
| ! | GAGATAAGATTTGTGTTTAT+AGG | + | chr5_1:54483645-54483664 | Msa0737300:intron | 25.0% |
| ! | GATAAGATTTGTGTTTATAG+GGG | + | chr5_1:54483647-54483666 | Msa0737300:intron | 25.0% |
| ! | ATAAGATTTGTGTTTATAGG+GGG | + | chr5_1:54483648-54483667 | Msa0737300:intron | 25.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5_1:54483932-54483951 | None:intergenic | 25.0% |
| ! | ATGAGAGAAAATGAAAGTTT+AGG | + | chr5_1:54484160-54484179 | Msa0737300:intron | 25.0% |
| ! | TGAGAGAAAATGAAAGTTTA+GGG | + | chr5_1:54484161-54484180 | Msa0737300:intron | 25.0% |
| ! | TATATATTTGTTCATGGTGT+AGG | + | chr5_1:54484260-54484279 | Msa0737300:intron | 25.0% |
| ! | GAGTCTTTGATTAATTTCAA+AGG | + | chr5_1:54483013-54483032 | Msa0737300:CDS | 25.0% |
| ! | TTGTTGCAAATTATTCTCAT+TGG | - | chr5_1:54483113-54483132 | None:intergenic | 25.0% |
| !! | ATGAGAATAATTTGCAACAA+TGG | + | chr5_1:54483113-54483132 | Msa0737300:CDS | 25.0% |
| !!! | CACAAATTTGTGTTACTTTT+AGG | - | chr5_1:54483151-54483170 | None:intergenic | 25.0% |
| ! | AGTGTAAAAGATAAGCAAAA+TGG | + | chr5_1:54483232-54483251 | Msa0737300:CDS | 25.0% |
| ! | TGATAGCTTAATAAAAGAGT+CGG | + | chr5_1:54483318-54483337 | Msa0737300:CDS | 25.0% |
| ! | ATGACTCTAAACATCATAAA+TGG | - | chr5_1:54483418-54483437 | None:intergenic | 25.0% |
| ! | GAGAACTTAATGAAATAGAA+TGG | + | chr5_1:54483616-54483635 | Msa0737300:intron | 25.0% |
| ! | GAGATAAGATTTGTGTTTAT+AGG | + | chr5_1:54483645-54483664 | Msa0737300:intron | 25.0% |
| ! | GATAAGATTTGTGTTTATAG+GGG | + | chr5_1:54483647-54483666 | Msa0737300:intron | 25.0% |
| ! | ATAAGATTTGTGTTTATAGG+GGG | + | chr5_1:54483648-54483667 | Msa0737300:intron | 25.0% |
| ! | ACTAATTTGAAAATCTACCT+TGG | - | chr5_1:54483932-54483951 | None:intergenic | 25.0% |
| ! | ATGAGAGAAAATGAAAGTTT+AGG | + | chr5_1:54484160-54484179 | Msa0737300:intron | 25.0% |
| ! | TGAGAGAAAATGAAAGTTTA+GGG | + | chr5_1:54484161-54484180 | Msa0737300:intron | 25.0% |
| ! | TATATATTTGTTCATGGTGT+AGG | + | chr5_1:54484260-54484279 | Msa0737300:intron | 25.0% |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5_1:54482813-54482832 | None:intergenic | 30.0% | |
| !! | TATTTTTGACGAGACTACTA+TGG | + | chr5_1:54482832-54482851 | Msa0737300:CDS | 30.0% |
| TCTATGATTGAAGAAGAAGA+TGG | + | chr5_1:54482884-54482903 | Msa0737300:CDS | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5_1:54482945-54482964 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5_1:54483046-54483065 | Msa0737300:CDS | 30.0% | |
| AAGTAACACAAATTTGTGCA+TGG | + | chr5_1:54483153-54483172 | Msa0737300:CDS | 30.0% | |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5_1:54483187-54483206 | Msa0737300:CDS | 30.0% |
| TAAGATTTGTGTTTATAGGG+GGG | + | chr5_1:54483649-54483668 | Msa0737300:intron | 30.0% | |
| AAGAAAGCAACATAACTTTG+AGG | - | chr5_1:54483955-54483974 | None:intergenic | 30.0% | |
| AATTTACAAAGACTTTGGCT+TGG | - | chr5_1:54483991-54484010 | None:intergenic | 30.0% | |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5_1:54484043-54484062 | Msa0737300:intron | 30.0% |
| ACAATGTAGAATGTTGTTGT+TGG | - | chr5_1:54482813-54482832 | None:intergenic | 30.0% | |
| !! | TATTTTTGACGAGACTACTA+TGG | + | chr5_1:54482832-54482851 | Msa0737300:CDS | 30.0% |
| TCTATGATTGAAGAAGAAGA+TGG | + | chr5_1:54482884-54482903 | Msa0737300:CDS | 30.0% | |
| TAGAGTAGGAGAATTTGTAA+TGG | - | chr5_1:54482945-54482964 | None:intergenic | 30.0% | |
| TATTACAACAATCTCATGCA+AGG | + | chr5_1:54483046-54483065 | Msa0737300:CDS | 30.0% | |
| AAGTAACACAAATTTGTGCA+TGG | + | chr5_1:54483153-54483172 | Msa0737300:CDS | 30.0% | |
| !! | AATAGCTTTGAAACTTCAAG+TGG | + | chr5_1:54483187-54483206 | Msa0737300:CDS | 30.0% |
| TAAGATTTGTGTTTATAGGG+GGG | + | chr5_1:54483649-54483668 | Msa0737300:intron | 30.0% | |
| AAGAAAGCAACATAACTTTG+AGG | - | chr5_1:54483955-54483974 | None:intergenic | 30.0% | |
| AATTTACAAAGACTTTGGCT+TGG | - | chr5_1:54483991-54484010 | None:intergenic | 30.0% | |
| !!! | ATGAATTTTGCAGGTTGATT+TGG | + | chr5_1:54484043-54484062 | Msa0737300:intron | 30.0% |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5_1:54483247-54483266 | Msa0737300:CDS | 35.0% | |
| CGGTTATGTGCAATATATCA+AGG | - | chr5_1:54483476-54483495 | None:intergenic | 35.0% | |
| TGATATATTGCACATAACCG+CGG | + | chr5_1:54483476-54483495 | Msa0737300:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5_1:54483729-54483748 | Msa0737300:CDS | 35.0% | |
| !! | ACTCTGATGATGAATTTTGC+AGG | + | chr5_1:54484034-54484053 | Msa0737300:intron | 35.0% |
| ACTAATTGCTTTCTCCAACA+TGG | - | chr5_1:54484072-54484091 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5_1:54484330-54484349 | None:intergenic | 35.0% |
| CAAAATGGTGAAAGTTCATG+TGG | + | chr5_1:54483247-54483266 | Msa0737300:CDS | 35.0% | |
| CGGTTATGTGCAATATATCA+AGG | - | chr5_1:54483476-54483495 | None:intergenic | 35.0% | |
| TGATATATTGCACATAACCG+CGG | + | chr5_1:54483476-54483495 | Msa0737300:intron | 35.0% | |
| ACATAAGTCAAATCCATCCA+AGG | + | chr5_1:54483729-54483748 | Msa0737300:CDS | 35.0% | |
| !! | ACTCTGATGATGAATTTTGC+AGG | + | chr5_1:54484034-54484053 | Msa0737300:intron | 35.0% |
| ACTAATTGCTTTCTCCAACA+TGG | - | chr5_1:54484072-54484091 | None:intergenic | 35.0% | |
| ! | TGTTTTACTTGACCAATGTC+AGG | - | chr5_1:54484330-54484349 | None:intergenic | 35.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5_1:54482902-54482921 | Msa0737300:CDS | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5_1:54482953-54482972 | Msa0737300:CDS | 40.0% | |
| CTCCTACTCTATGCAGAAAA+GGG | + | chr5_1:54482954-54482973 | Msa0737300:CDS | 40.0% | |
| !! | TGCTTAGTTTTCAGCAGAGT+TGG | + | chr5_1:54483080-54483099 | Msa0737300:CDS | 40.0% |
| ! | TAGTTTTCAGCAGAGTTGGA+TGG | + | chr5_1:54483084-54483103 | Msa0737300:CDS | 40.0% |
| ACAAATTTGTGCATGGTGCA+AGG | + | chr5_1:54483160-54483179 | Msa0737300:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5_1:54483196-54483215 | Msa0737300:CDS | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5_1:54483251-54483270 | Msa0737300:CDS | 40.0% | |
| GAACCAAATGTTCCTTGTGA+TGG | + | chr5_1:54483283-54483302 | Msa0737300:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5_1:54483356-54483375 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5_1:54483357-54483376 | Msa0737300:CDS | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5_1:54483872-54483891 | Msa0737300:CDS | 40.0% | |
| AAATCTACCTTGGAACCGTT+TGG | - | chr5_1:54483922-54483941 | None:intergenic | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5_1:54484055-54484074 | Msa0737300:intron | 40.0% |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5_1:54484100-54484119 | Msa0737300:CDS | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5_1:54484266-54484285 | Msa0737300:intron | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5_1:54484283-54484302 | Msa0737300:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | + | chr5_1:54484294-54484313 | Msa0737300:CDS | 40.0% |
| ! | GATGGTTCACAAAGCACTAA+TGG | + | chr5_1:54482902-54482921 | Msa0737300:CDS | 40.0% |
| TCTCCTACTCTATGCAGAAA+AGG | + | chr5_1:54482953-54482972 | Msa0737300:CDS | 40.0% | |
| CTCCTACTCTATGCAGAAAA+GGG | + | chr5_1:54482954-54482973 | Msa0737300:CDS | 40.0% | |
| !! | TGCTTAGTTTTCAGCAGAGT+TGG | + | chr5_1:54483080-54483099 | Msa0737300:CDS | 40.0% |
| ! | TAGTTTTCAGCAGAGTTGGA+TGG | + | chr5_1:54483084-54483103 | Msa0737300:CDS | 40.0% |
| ACAAATTTGTGCATGGTGCA+AGG | + | chr5_1:54483160-54483179 | Msa0737300:CDS | 40.0% | |
| GAAACTTCAAGTGGTAGCTA+TGG | + | chr5_1:54483196-54483215 | Msa0737300:CDS | 40.0% | |
| ATGGTGAAAGTTCATGTGGA+TGG | + | chr5_1:54483251-54483270 | Msa0737300:CDS | 40.0% | |
| GAACCAAATGTTCCTTGTGA+TGG | + | chr5_1:54483283-54483302 | Msa0737300:CDS | 40.0% | |
| AGAAGATCGCTTCTTCAAGA+CGG | - | chr5_1:54483356-54483375 | None:intergenic | 40.0% | |
| CTTGAAGAAGCGATCTTCTA+TGG | + | chr5_1:54483357-54483376 | Msa0737300:CDS | 40.0% | |
| GAAGAGAGAGAATAAGTGAG+AGG | + | chr5_1:54483872-54483891 | Msa0737300:CDS | 40.0% | |
| AAATCTACCTTGGAACCGTT+TGG | - | chr5_1:54483922-54483941 | None:intergenic | 40.0% | |
| !! | GGTTGATTTGGTTACCATGT+TGG | + | chr5_1:54484055-54484074 | Msa0737300:intron | 40.0% |
| GTTTCTTCAGTTGCAAGTGA+AGG | + | chr5_1:54484100-54484119 | Msa0737300:CDS | 40.0% | |
| TTTGTTCATGGTGTAGGTGT+TGG | + | chr5_1:54484266-54484285 | Msa0737300:intron | 40.0% | |
| ! | TGTTGGCAGCTGATGAATTT+TGG | + | chr5_1:54484283-54484302 | Msa0737300:CDS | 40.0% |
| !! | GATGAATTTTGGCCAGTCAA+TGG | + | chr5_1:54484294-54484313 | Msa0737300:CDS | 40.0% |
| ! | TGCCCTTTTCTGCATAGAGT+AGG | - | chr5_1:54482959-54482978 | None:intergenic | 45.0% |
| TCGCCATCACAAGGAACATT+TGG | - | chr5_1:54483289-54483308 | None:intergenic | 45.0% | |
| ! | TGATGTTTCTGTCGTGATCG+CGG | + | chr5_1:54483527-54483546 | Msa0737300:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5_1:54483703-54483722 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5_1:54483745-54483764 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5_1:54483749-54483768 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5_1:54483773-54483792 | None:intergenic | 45.0% |
| CTACAAGAGCTTGTGCCAAA+CGG | + | chr5_1:54483904-54483923 | Msa0737300:CDS | 45.0% | |
| !! | GAATTTTGGCCAGTCAATGG+TGG | + | chr5_1:54484297-54484316 | Msa0737300:CDS | 45.0% |
| ! | TGCCCTTTTCTGCATAGAGT+AGG | - | chr5_1:54482959-54482978 | None:intergenic | 45.0% |
| TCGCCATCACAAGGAACATT+TGG | - | chr5_1:54483289-54483308 | None:intergenic | 45.0% | |
| ! | TGATGTTTCTGTCGTGATCG+CGG | + | chr5_1:54483527-54483546 | Msa0737300:intron | 45.0% |
| TTCTTACTTGCAGCTGTGCA+TGG | - | chr5_1:54483703-54483722 | None:intergenic | 45.0% | |
| ! | ACACTTTGAGGATCCTTGGA+TGG | - | chr5_1:54483745-54483764 | None:intergenic | 45.0% |
| ! | AGCAACACTTTGAGGATCCT+TGG | - | chr5_1:54483749-54483768 | None:intergenic | 45.0% |
| ! | CTTGGGTTTGAAGCAAACCT+TGG | - | chr5_1:54483773-54483792 | None:intergenic | 45.0% |
| CTACAAGAGCTTGTGCCAAA+CGG | + | chr5_1:54483904-54483923 | Msa0737300:CDS | 45.0% | |
| !! | GAATTTTGGCCAGTCAATGG+TGG | + | chr5_1:54484297-54484316 | Msa0737300:CDS | 45.0% |
| TGCACATAACCGCGGTCAAA+TGG | + | chr5_1:54483484-54483503 | Msa0737300:intron | 50.0% | |
| GCACATAACCGCGGTCAAAT+GGG | + | chr5_1:54483485-54483504 | Msa0737300:intron | 50.0% | |
| GTATTCGTCCCATTTGACCG+CGG | - | chr5_1:54483496-54483515 | None:intergenic | 50.0% | |
| !! | CATGGCTTCTTGGCATTGGT+AGG | - | chr5_1:54483685-54483704 | None:intergenic | 50.0% |
| TGTGCATGGCTTCTTGGCAT+TGG | - | chr5_1:54483689-54483708 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5_1:54483753-54483772 | Msa0737300:CDS | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5_1:54483757-54483776 | None:intergenic | 50.0% | |
| CGTTTGGCACAAGCTCTTGT+AGG | - | chr5_1:54483906-54483925 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+TGG | - | chr5_1:54484309-54484328 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5_1:54484315-54484334 | Msa0737300:CDS | 50.0% | |
| TGCACATAACCGCGGTCAAA+TGG | + | chr5_1:54483484-54483503 | Msa0737300:intron | 50.0% | |
| GCACATAACCGCGGTCAAAT+GGG | + | chr5_1:54483485-54483504 | Msa0737300:intron | 50.0% | |
| GTATTCGTCCCATTTGACCG+CGG | - | chr5_1:54483496-54483515 | None:intergenic | 50.0% | |
| !! | CATGGCTTCTTGGCATTGGT+AGG | - | chr5_1:54483685-54483704 | None:intergenic | 50.0% |
| TGTGCATGGCTTCTTGGCAT+TGG | - | chr5_1:54483689-54483708 | None:intergenic | 50.0% | |
| !! | TCCTCAAAGTGTTGCTGCCA+AGG | + | chr5_1:54483753-54483772 | Msa0737300:CDS | 50.0% |
| ACCTTGGCAGCAACACTTTG+AGG | - | chr5_1:54483757-54483776 | None:intergenic | 50.0% | |
| CGTTTGGCACAAGCTCTTGT+AGG | - | chr5_1:54483906-54483925 | None:intergenic | 50.0% | |
| ! | GGAGCTTTTCCACCATTGAC+TGG | - | chr5_1:54484309-54484328 | None:intergenic | 50.0% |
| GGTGGAAAAGCTCCTGACAT+TGG | + | chr5_1:54484315-54484334 | Msa0737300:CDS | 50.0% | |
| TCATCGTCGTCGCCATCACA+AGG | - | chr5_1:54483298-54483317 | None:intergenic | 55.0% | |
| TGCAGCTGTGCATGGCTTCT+TGG | - | chr5_1:54483695-54483714 | None:intergenic | 55.0% | |
| GCTTGTGCCAAACGGTTCCA+AGG | + | chr5_1:54483912-54483931 | Msa0737300:CDS | 55.0% | |
| TCATCGTCGTCGCCATCACA+AGG | - | chr5_1:54483298-54483317 | None:intergenic | 55.0% | |
| TGCAGCTGTGCATGGCTTCT+TGG | - | chr5_1:54483695-54483714 | None:intergenic | 55.0% | |
| GCTTGTGCCAAACGGTTCCA+AGG | + | chr5_1:54483912-54483931 | Msa0737300:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54482800 | 54484383 | 54482800 | ID=Msa0737300;Name=Msa0737300 |
| chr5_1 | mRNA | 54482800 | 54484383 | 54482800 | ID=Msa0737300-mRNA-1;Parent=Msa0737300;Name=Msa0737300-mRNA-1;_AED=0.11;_eAED=0.11;_QI=0|0|0|1|1|1|5|0|306 |
| chr5_1 | exon | 54482800 | 54483378 | 54482800 | ID=Msa0737300-mRNA-1:exon:15264;Parent=Msa0737300-mRNA-1 |
| chr5_1 | exon | 54483667 | 54483774 | 54483667 | ID=Msa0737300-mRNA-1:exon:15265;Parent=Msa0737300-mRNA-1 |
| chr5_1 | exon | 54483868 | 54483933 | 54483868 | ID=Msa0737300-mRNA-1:exon:15266;Parent=Msa0737300-mRNA-1 |
| chr5_1 | exon | 54484056 | 54484121 | 54484056 | ID=Msa0737300-mRNA-1:exon:15267;Parent=Msa0737300-mRNA-1 |
| chr5_1 | exon | 54484282 | 54484383 | 54484282 | ID=Msa0737300-mRNA-1:exon:15268;Parent=Msa0737300-mRNA-1 |
| chr5_1 | CDS | 54482800 | 54483378 | 54482800 | ID=Msa0737300-mRNA-1:cds;Parent=Msa0737300-mRNA-1 |
| chr5_1 | CDS | 54483667 | 54483774 | 54483667 | ID=Msa0737300-mRNA-1:cds;Parent=Msa0737300-mRNA-1 |
| chr5_1 | CDS | 54483868 | 54483933 | 54483868 | ID=Msa0737300-mRNA-1:cds;Parent=Msa0737300-mRNA-1 |
| chr5_1 | CDS | 54484056 | 54484121 | 54484056 | ID=Msa0737300-mRNA-1:cds;Parent=Msa0737300-mRNA-1 |
| chr5_1 | CDS | 54484282 | 54484383 | 54484282 | ID=Msa0737300-mRNA-1:cds;Parent=Msa0737300-mRNA-1 |
| Gene Sequence |
| Protein sequence |
