Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737460 | XP_003598029.2 | 44.397 | 232 | 87 | 5 | 13 | 202 | 277 | 508 | 2.95e-44 | 171 |
| Msa0737460 | XP_003598029.2 | 55.491 | 173 | 54 | 2 | 202 | 374 | 14 | 163 | 2.01e-49 | 185 |
| Msa0737460 | XP_003598029.2 | 66.158 | 393 | 107 | 5 | 13 | 381 | 40 | 430 | 5.44e-170 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737460 | sp|Q8L3W1|VRN1_ARATH | 40.000 | 100 | 60 | 0 | 214 | 313 | 6 | 105 | 1.90e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737460 | G7IYE8 | 44.397 | 232 | 87 | 5 | 13 | 202 | 277 | 508 | 1.41e-44 | 171 |
| Msa0737460 | G7IYE8 | 55.491 | 173 | 54 | 2 | 202 | 374 | 14 | 163 | 9.61e-50 | 185 |
| Msa0737460 | G7IYE8 | 66.158 | 393 | 107 | 5 | 13 | 381 | 40 | 430 | 2.60e-170 | 496 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0737460 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737460 | MtrunA17_Chr3g0077411 | 66.158 | 393 | 107 | 5 | 13 | 381 | 40 | 430 | 5.00e-174 | 496 |
| Msa0737460 | MtrunA17_Chr3g0077411 | 55.491 | 173 | 54 | 2 | 202 | 374 | 14 | 163 | 1.85e-53 | 185 |
| Msa0737460 | MtrunA17_Chr3g0077411 | 44.397 | 232 | 87 | 5 | 13 | 202 | 277 | 508 | 2.72e-48 | 171 |
| Msa0737460 | MtrunA17_Chr3g0077461 | 62.466 | 365 | 105 | 4 | 2 | 343 | 11 | 366 | 2.98e-151 | 436 |
| Msa0737460 | MtrunA17_Chr3g0077461 | 45.238 | 210 | 89 | 8 | 13 | 200 | 252 | 457 | 8.12e-42 | 153 |
| Msa0737460 | MtrunA17_Chr4g0009491 | 60.104 | 386 | 140 | 2 | 9 | 381 | 8 | 392 | 1.27e-149 | 430 |
| Msa0737460 | MtrunA17_Chr4g0009491 | 47.312 | 186 | 64 | 3 | 13 | 164 | 240 | 425 | 1.22e-38 | 144 |
| Msa0737460 | MtrunA17_Chr3g0077361 | 54.839 | 403 | 112 | 4 | 13 | 381 | 55 | 421 | 3.60e-131 | 386 |
| Msa0737460 | MtrunA17_Chr3g0077361 | 53.005 | 183 | 60 | 4 | 200 | 381 | 29 | 186 | 2.13e-48 | 171 |
| Msa0737460 | MtrunA17_Chr3g0077361 | 40.394 | 203 | 94 | 3 | 13 | 202 | 304 | 492 | 2.20e-32 | 127 |
| Msa0737460 | MtrunA17_Chr3g0077381 | 53.041 | 411 | 136 | 4 | 10 | 386 | 32 | 419 | 1.17e-130 | 382 |
| Msa0737460 | MtrunA17_Chr3g0077381 | 46.237 | 186 | 59 | 4 | 13 | 164 | 262 | 440 | 2.09e-36 | 138 |
| Msa0737460 | MtrunA17_Chr5g0429931 | 70.064 | 157 | 47 | 0 | 224 | 380 | 5 | 161 | 2.39e-70 | 221 |
| Msa0737460 | MtrunA17_Chr5g0429931 | 50.442 | 226 | 78 | 3 | 11 | 202 | 8 | 233 | 1.66e-64 | 206 |
| Msa0737460 | MtrunA17_Chr3g0077451 | 65.584 | 154 | 43 | 1 | 228 | 381 | 10 | 153 | 3.92e-64 | 205 |
| Msa0737460 | MtrunA17_Chr3g0077451 | 50.226 | 221 | 85 | 3 | 11 | 206 | 9 | 229 | 5.29e-59 | 192 |
| Msa0737460 | MtrunA17_Chr3g0077431 | 53.158 | 190 | 77 | 2 | 29 | 206 | 1 | 190 | 1.36e-55 | 182 |
| Msa0737460 | MtrunA17_Chr3g0077431 | 63.710 | 124 | 35 | 1 | 258 | 381 | 1 | 114 | 7.14e-47 | 159 |
| Msa0737460 | MtrunA17_Chr3g0077421 | 50.785 | 191 | 81 | 2 | 29 | 206 | 1 | 191 | 2.50e-51 | 171 |
| Msa0737460 | MtrunA17_Chr3g0077421 | 64.516 | 124 | 34 | 1 | 258 | 381 | 1 | 114 | 6.23e-46 | 157 |
| Msa0737460 | MtrunA17_Chr3g0077441 | 50.785 | 191 | 81 | 2 | 29 | 206 | 1 | 191 | 2.50e-51 | 171 |
| Msa0737460 | MtrunA17_Chr3g0077441 | 64.516 | 124 | 34 | 1 | 258 | 381 | 1 | 114 | 6.23e-46 | 157 |
| Msa0737460 | MtrunA17_Chr1g0162441 | 44.000 | 100 | 56 | 0 | 214 | 313 | 7 | 106 | 6.18e-25 | 105 |
| Msa0737460 | MtrunA17_Chr4g0033961 | 41.748 | 103 | 60 | 0 | 211 | 313 | 3 | 105 | 1.50e-21 | 95.9 |
| Msa0737460 | MtrunA17_Chr1g0162411 | 42.222 | 90 | 52 | 0 | 214 | 303 | 7 | 96 | 4.00e-19 | 89.0 |
| Msa0737460 | MtrunA17_Chr7g0233571 | 30.435 | 138 | 96 | 0 | 213 | 350 | 9 | 146 | 2.67e-15 | 74.7 |
| Msa0737460 | MtrunA17_Chr7g0233561 | 31.724 | 145 | 88 | 3 | 207 | 340 | 9 | 153 | 3.04e-15 | 76.3 |
| Msa0737460 | MtrunA17_Chr5g0419201 | 32.432 | 111 | 75 | 0 | 202 | 312 | 4 | 114 | 3.42e-15 | 73.6 |
| Msa0737460 | MtrunA17_Chr3g0131891 | 28.743 | 167 | 105 | 2 | 195 | 352 | 5 | 166 | 7.56e-15 | 75.1 |
| Msa0737460 | MtrunA17_Chr3g0103181 | 31.250 | 144 | 96 | 2 | 213 | 356 | 11 | 151 | 2.62e-13 | 69.7 |
| Msa0737460 | MtrunA17_Chr3g0103151 | 29.861 | 144 | 98 | 2 | 213 | 356 | 11 | 151 | 3.27e-13 | 67.0 |
| Msa0737460 | MtrunA17_Chr7g0233521 | 30.220 | 182 | 99 | 6 | 230 | 384 | 2 | 182 | 3.47e-13 | 69.3 |
| Msa0737460 | MtrunA17_Chr3g0103171 | 35.714 | 84 | 54 | 0 | 229 | 312 | 5 | 88 | 4.95e-12 | 65.9 |
| Msa0737460 | MtrunA17_Chr3g0103191 | 27.568 | 185 | 103 | 4 | 214 | 371 | 12 | 192 | 7.24e-12 | 65.1 |
| Msa0737460 | MtrunA17_Chr1g0162421 | 41.071 | 56 | 33 | 0 | 228 | 283 | 7 | 62 | 8.64e-12 | 60.1 |
| Msa0737460 | MtrunA17_Chr7g0233541 | 29.730 | 111 | 72 | 1 | 230 | 334 | 2 | 112 | 4.12e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0737460 | AT3G18990.1 | 40.000 | 100 | 60 | 0 | 214 | 313 | 6 | 105 | 1.93e-18 | 86.3 |
| Msa0737460 | AT3G18990.2 | 39.423 | 104 | 63 | 0 | 214 | 317 | 6 | 109 | 2.93e-18 | 85.9 |
| Msa0737460 | AT4G01580.1 | 35.849 | 106 | 68 | 0 | 212 | 317 | 28 | 133 | 2.97e-16 | 77.0 |
| Msa0737460 | AT3G18960.2 | 35.644 | 101 | 65 | 0 | 212 | 312 | 28 | 128 | 2.19e-15 | 74.7 |
| Msa0737460 | AT3G18960.1 | 35.644 | 101 | 65 | 0 | 212 | 312 | 28 | 128 | 2.25e-15 | 75.1 |
| Msa0737460 | AT1G49475.1 | 35.965 | 114 | 69 | 2 | 199 | 312 | 22 | 131 | 2.79e-13 | 68.6 |
| Msa0737460 | AT3G18960.3 | 34.524 | 84 | 55 | 0 | 229 | 312 | 8 | 91 | 1.93e-11 | 62.8 |
Find 76 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGACTTTATAACAATATT+TGG | 0.103105 | 5_1:-54713832 | Msa0737460:CDS |
| ACTGCTTTCCTTGAGAATTT+TGG | 0.150373 | 5_1:+54714767 | Msa0737450:intron |
| GAGCACTTTGAACGAAAATA+AGG | 0.215729 | 5_1:+54713421 | Msa0737450:intron |
| GGATGGTCTAATTTGGAAAA+TGG | 0.229629 | 5_1:-54713773 | Msa0737460:CDS |
| CTGTTCCGGATGGTCTAATT+TGG | 0.238913 | 5_1:-54713780 | Msa0737460:CDS |
| GATGAGTTTATAACAAGATT+TGG | 0.242784 | 5_1:-54715266 | Msa0737460:CDS |
| AACAAGATTTGGGAAAGATT+TGG | 0.264591 | 5_1:-54715255 | Msa0737460:CDS |
| ATTTCCTATCTATTCAAAAC+TGG | 0.268008 | 5_1:-54715071 | Msa0737460:CDS |
| ACAAGATTTGGGAAAGATTT+GGG | 0.278385 | 5_1:-54715254 | Msa0737460:CDS |
| TATGGCCTTCTTAAAATGTT+TGG | 0.280661 | 5_1:+54713996 | Msa0737450:intron |
| AATATTGTTATAAAGTCTTC+TGG | 0.286515 | 5_1:+54713835 | Msa0737450:intron |
| CTGTAGTGACCAATCTTTAG+AGG | 0.292480 | 5_1:+54715298 | Msa0737450:intron |
| GGACTATGACACTCTTTGTT+TGG | 0.315553 | 5_1:+54713559 | Msa0737450:intron |
| AAGTGAGAGTCAAGAGAAAA+AGG | 0.347170 | 5_1:-54713512 | Msa0737460:CDS |
| ATGAGTTTATAACAAGATTT+GGG | 0.351444 | 5_1:-54715265 | Msa0737460:CDS |
| GGTGAAATTTACAATTTGTT+TGG | 0.353537 | 5_1:+54713954 | Msa0737450:intron |
| TACAATTTGTTTGGCATGAA+TGG | 0.360092 | 5_1:+54713963 | Msa0737450:intron |
| AAGACTTTATAACAATATTT+GGG | 0.361172 | 5_1:-54713831 | Msa0737460:CDS |
| TTCAAAACTGGGAAGACTAA+TGG | 0.372140 | 5_1:-54715059 | Msa0737460:CDS |
| AAATCAATGCGAATAACGTT+TGG | 0.379436 | 5_1:-54714709 | Msa0737460:CDS |
| TGGGAAAGATTTGGGAATGA+TGG | 0.387692 | 5_1:-54715246 | Msa0737460:CDS |
| TGGAGCTTGAACAGAACATT+TGG | 0.389188 | 5_1:+54714787 | Msa0737450:intron |
| TTGGAAGAACGCGTTGTGTT+TGG | 0.403247 | 5_1:+54715032 | Msa0737450:intron |
| CCTCACCACATATCTTCCTT+TGG | 0.412092 | 5_1:+54713399 | Msa0737450:intron |
| AATCTTGTTATAAACTCATC+TGG | 0.413404 | 5_1:+54715269 | Msa0737450:intron |
| TGCAGGCGGAGAAGGAAGTT+AGG | 0.415021 | 5_1:-54714023 | Msa0737460:intron |
| ACTCTCACTTGTTTCGACCT+TGG | 0.417847 | 5_1:+54713525 | Msa0737450:intron |
| ATGAATGGGTGACGGAAGTA+TGG | 0.419901 | 5_1:+54713978 | Msa0737450:intron |
| TACTTGTCTTTCAAATATGA+AGG | 0.427472 | 5_1:-54713667 | Msa0737460:CDS |
| GAACACTACTCTATCTGTTA+TGG | 0.428310 | 5_1:-54715167 | Msa0737460:CDS |
| TCTGTAGATTTCAAGTATGA+AGG | 0.428768 | 5_1:-54715140 | Msa0737460:CDS |
| TGTTGCTACAGTTACTGTTC+CGG | 0.431782 | 5_1:-54713794 | Msa0737460:CDS |
| TTCAAAACTCTAAGTACTAA+AGG | 0.437207 | 5_1:-54713586 | Msa0737460:CDS |
| TGTCTAAATATGCTTCTAAG+AGG | 0.458130 | 5_1:-54713480 | Msa0737460:CDS |
| TACTTTGCAGCGAATTCAGC+AGG | 0.458261 | 5_1:+54714817 | Msa0737450:intron |
| AGCACTTTGAACGAAAATAA+GGG | 0.459706 | 5_1:+54713422 | Msa0737450:intron |
| ATCACCCTTCCTCTAAAGAT+TGG | 0.475124 | 5_1:-54715307 | Msa0737460:CDS |
| ACAAAGAGTGTCATAGTCCT+AGG | 0.483569 | 5_1:-54713555 | Msa0737460:CDS |
| TATTGAATTGCAGGCGGAGA+AGG | 0.498005 | 5_1:-54714031 | Msa0737460:intron |
| ATATCGACAGTCAAAGGATT+GGG | 0.499850 | 5_1:+54714944 | Msa0737450:intron |
| ACAATTTGTTTGGCATGAAT+GGG | 0.501644 | 5_1:+54713964 | Msa0737450:intron |
| TTGGATTCTTTAGATTTGCA+AGG | 0.513403 | 5_1:-54714690 | Msa0737460:CDS |
| AGTGTCATAGTCCTAGGAAA+AGG | 0.516090 | 5_1:-54713549 | Msa0737460:CDS |
| CATATCGACAGTCAAAGGAT+TGG | 0.519552 | 5_1:+54714943 | Msa0737450:intron |
| AAGGATTGGGAACGAAAAGA+AGG | 0.522583 | 5_1:+54714957 | Msa0737450:intron |
| GCAGGCGGAGAAGGAAGTTA+GGG | 0.528822 | 5_1:-54714022 | Msa0737460:intron |
| ACTTGTCTTTCAAATATGAA+GGG | 0.536470 | 5_1:-54713666 | Msa0737460:CDS |
| CACCGCATATCGACAGTCAA+AGG | 0.544452 | 5_1:+54714938 | Msa0737450:intron |
| AGGGAAAACAATCTATCAGA+TGG | 0.548736 | 5_1:-54714670 | Msa0737460:CDS |
| TTTCGTTCAAAGTGCTCCAA+AGG | 0.552472 | 5_1:-54713415 | Msa0737460:CDS |
| TTCAAGCTCCAAAATTCTCA+AGG | 0.552648 | 5_1:-54714775 | Msa0737460:CDS |
| AGAACAAAGGATGCTGCCAA+TGG | 0.556963 | 5_1:-54714996 | Msa0737460:CDS |
| TTTCCTATCTATTCAAAACT+GGG | 0.559847 | 5_1:-54715070 | Msa0737460:CDS |
| TGGATTCTTTAGATTTGCAA+GGG | 0.565236 | 5_1:-54714689 | Msa0737460:CDS |
| AGTGACCAATCTTTAGAGGA+AGG | 0.568653 | 5_1:+54715302 | Msa0737450:intron |
| ATATGCTTCTAAGAGGGCTG+AGG | 0.576389 | 5_1:-54713473 | Msa0737460:CDS |
| TATTGTGTATTGAATAAAAG+CGG | 0.577376 | 5_1:-54714736 | Msa0737460:CDS |
| TGTGTATTGAATAAAAGCGG+TGG | 0.597510 | 5_1:-54714733 | Msa0737460:CDS |
| AAAATTCTCAAGGAAAGCAG+TGG | 0.599450 | 5_1:-54714765 | Msa0737460:CDS |
| ATAGAGTAGTGTTCTGCGAA+CGG | 0.599484 | 5_1:+54715176 | Msa0737450:intron |
| AAAATGGAGTTGAAGATATG+TGG | 0.601427 | 5_1:-54713757 | Msa0737460:CDS |
| AGGATTGGGAACGAAAAGAA+GGG | 0.605751 | 5_1:+54714958 | Msa0737450:intron |
| GTGACCAATCTTTAGAGGAA+GGG | 0.612342 | 5_1:+54715303 | Msa0737450:intron |
| GTCTAAATATGCTTCTAAGA+GGG | 0.612421 | 5_1:-54713479 | Msa0737460:CDS |
| GTGCTCCAAAGGAAGATATG+TGG | 0.623189 | 5_1:-54713404 | Msa0737460:CDS |
| ATCCTTTGACTGTCGATATG+CGG | 0.632326 | 5_1:-54714940 | Msa0737460:intron |
| GCTACAGTTACTGTTCCGGA+TGG | 0.632577 | 5_1:-54713790 | Msa0737460:CDS |
| AAATTCTCAAGGAAAGCAGT+GGG | 0.637805 | 5_1:-54714764 | Msa0737460:CDS |
| TAGTCCTAGGAAAAGGTCCA+AGG | 0.641569 | 5_1:-54713542 | Msa0737460:CDS |
| GGAGTTGAAGATATGTGGCA+AGG | 0.642891 | 5_1:-54713752 | Msa0737460:CDS |
| CTTTGCTCCGAAAAGAACAA+AGG | 0.651496 | 5_1:-54715009 | Msa0737460:CDS |
| ACGAGTTTGAGCTTATCAAG+AGG | 0.654788 | 5_1:-54714639 | Msa0737460:CDS |
| CCAAAGGAAGATATGTGGTG+AGG | 0.663159 | 5_1:-54713399 | Msa0737460:CDS |
| TGTTTGGCATGAATGGGTGA+CGG | 0.666868 | 5_1:+54713970 | Msa0737450:intron |
| ATGATGGAAGTAAAGAAACG+TGG | 0.750133 | 5_1:-54715230 | Msa0737460:CDS |
| AATCACGATAGTCAACCACG+CGG | 0.904290 | 5_1:+54713353 | Msa0737450:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGATTTTACTATACATTATT+TGG | - | chr5_1:54713748-54713767 | Msa0737460:CDS | 15.0% |
| !!! | ATGTTTGAGTTATATATTTA+TGG | - | chr5_1:54713782-54713801 | Msa0737460:CDS | 15.0% |
| !! | AAGACTTTATAACAATATTT+GGG | - | chr5_1:54714831-54714850 | Msa0737460:intron | 15.0% |
| !!! | TTTTCAAAATACTATTCTAT+AGG | - | chr5_1:54714962-54714981 | Msa0737460:CDS | 15.0% |
| !!! | TGATTTTACTATACATTATT+TGG | - | chr5_1:54713748-54713767 | Msa0737460:CDS | 15.0% |
| !!! | ATGTTTGAGTTATATATTTA+TGG | - | chr5_1:54713782-54713801 | Msa0737460:CDS | 15.0% |
| !! | AAGACTTTATAACAATATTT+GGG | - | chr5_1:54714831-54714850 | Msa0737460:intron | 15.0% |
| !!! | TTTTCAAAATACTATTCTAT+AGG | - | chr5_1:54714962-54714981 | Msa0737460:CDS | 15.0% |
| !! | ATGAGTTTATAACAAGATTT+GGG | - | chr5_1:54713397-54713416 | Msa0737460:CDS | 20.0% |
| !!! | AAGTTTTCTTTTGCAAAAAT+TGG | - | chr5_1:54713460-54713479 | Msa0737460:CDS | 20.0% |
| !! | TATTGTGTATTGAATAAAAG+CGG | - | chr5_1:54713926-54713945 | Msa0737460:intron | 20.0% |
| !! | TGTTGTATTGTAATTCATAT+AGG | - | chr5_1:54714157-54714176 | Msa0737460:intron | 20.0% |
| !!! | ATTGATGATAGCAATAAAAA+GGG | + | chr5_1:54714395-54714414 | Msa0737450:intron | 20.0% |
| !!! | TCTTTGTTTATAATGTGAAT+CGG | - | chr5_1:54714573-54714592 | Msa0737460:intron | 20.0% |
| !!! | TTGATGATAATATAACTCAT+CGG | + | chr5_1:54714777-54714796 | Msa0737450:intron | 20.0% |
| !! | AATATTGTTATAAAGTCTTC+TGG | + | chr5_1:54714830-54714849 | Msa0737450:intron | 20.0% |
| !! | GAAGACTTTATAACAATATT+TGG | - | chr5_1:54714830-54714849 | Msa0737460:intron | 20.0% |
| !!! | TAGAATAGTATTTTGAAAAC+TGG | + | chr5_1:54714961-54714980 | Msa0737450:intron | 20.0% |
| !! | ATGAGTTTATAACAAGATTT+GGG | - | chr5_1:54713397-54713416 | Msa0737460:CDS | 20.0% |
| !!! | AAGTTTTCTTTTGCAAAAAT+TGG | - | chr5_1:54713460-54713479 | Msa0737460:CDS | 20.0% |
| !! | TATTGTGTATTGAATAAAAG+CGG | - | chr5_1:54713926-54713945 | Msa0737460:intron | 20.0% |
| !! | TGTTGTATTGTAATTCATAT+AGG | - | chr5_1:54714157-54714176 | Msa0737460:intron | 20.0% |
| !!! | ATTGATGATAGCAATAAAAA+GGG | + | chr5_1:54714395-54714414 | Msa0737450:intron | 20.0% |
| !!! | TCTTTGTTTATAATGTGAAT+CGG | - | chr5_1:54714573-54714592 | Msa0737460:intron | 20.0% |
| !!! | TTGATGATAATATAACTCAT+CGG | + | chr5_1:54714777-54714796 | Msa0737450:intron | 20.0% |
| !! | AATATTGTTATAAAGTCTTC+TGG | + | chr5_1:54714830-54714849 | Msa0737450:intron | 20.0% |
| !! | GAAGACTTTATAACAATATT+TGG | - | chr5_1:54714830-54714849 | Msa0737460:intron | 20.0% |
| !!! | TAGAATAGTATTTTGAAAAC+TGG | + | chr5_1:54714961-54714980 | Msa0737450:intron | 20.0% |
| !! | AATCTTGTTATAAACTCATC+TGG | + | chr5_1:54713396-54713415 | Msa0737450:intron | 25.0% |
| ! | GATGAGTTTATAACAAGATT+TGG | - | chr5_1:54713396-54713415 | Msa0737460:CDS | 25.0% |
| ! | ATTTCCTATCTATTCAAAAC+TGG | - | chr5_1:54713591-54713610 | Msa0737460:CDS | 25.0% |
| ! | TTTCCTATCTATTCAAAACT+GGG | - | chr5_1:54713592-54713611 | Msa0737460:CDS | 25.0% |
| !!! | ATTCATATAGGTAGTTTTGT+TGG | - | chr5_1:54714169-54714188 | Msa0737460:intron | 25.0% |
| !!! | TTACCCTATTTTTACATAAG+AGG | + | chr5_1:54714294-54714313 | Msa0737450:intron | 25.0% |
| ! | TCTTATGTAAAAATAGGGTA+AGG | - | chr5_1:54714293-54714312 | Msa0737460:intron | 25.0% |
| !! | CATTGATGATAGCAATAAAA+AGG | + | chr5_1:54714396-54714415 | Msa0737450:intron | 25.0% |
| ! | GATAATGAGAAAGAATGATT+AGG | + | chr5_1:54714467-54714486 | Msa0737450:intron | 25.0% |
| ! | CTTATTACTTATTGAATTGC+AGG | - | chr5_1:54714622-54714641 | Msa0737460:intron | 25.0% |
| !! | GGTGAAATTTACAATTTGTT+TGG | + | chr5_1:54714711-54714730 | Msa0737450:intron | 25.0% |
| ! | TACTTGTCTTTCAAATATGA+AGG | - | chr5_1:54714995-54715014 | Msa0737460:CDS | 25.0% |
| ! | ACTTGTCTTTCAAATATGAA+GGG | - | chr5_1:54714996-54715015 | Msa0737460:CDS | 25.0% |
| ! | TTCAAAACTCTAAGTACTAA+AGG | - | chr5_1:54715076-54715095 | Msa0737460:CDS | 25.0% |
| !!! | AACGAAAATAAGGGTTTTTT+GGG | + | chr5_1:54715234-54715253 | Msa0737450:intron | 25.0% |
| !! | GGATTTTACTTTGTAGTTTT+TGG | - | chr5_1:54715284-54715303 | Msa0737460:CDS | 25.0% |
| !! | AATCTTGTTATAAACTCATC+TGG | + | chr5_1:54713396-54713415 | Msa0737450:intron | 25.0% |
| ! | GATGAGTTTATAACAAGATT+TGG | - | chr5_1:54713396-54713415 | Msa0737460:CDS | 25.0% |
| ! | ATTTCCTATCTATTCAAAAC+TGG | - | chr5_1:54713591-54713610 | Msa0737460:CDS | 25.0% |
| ! | TTTCCTATCTATTCAAAACT+GGG | - | chr5_1:54713592-54713611 | Msa0737460:CDS | 25.0% |
| !!! | ATTCATATAGGTAGTTTTGT+TGG | - | chr5_1:54714169-54714188 | Msa0737460:intron | 25.0% |
| !!! | TTACCCTATTTTTACATAAG+AGG | + | chr5_1:54714294-54714313 | Msa0737450:intron | 25.0% |
| ! | TCTTATGTAAAAATAGGGTA+AGG | - | chr5_1:54714293-54714312 | Msa0737460:intron | 25.0% |
| !! | CATTGATGATAGCAATAAAA+AGG | + | chr5_1:54714396-54714415 | Msa0737450:intron | 25.0% |
| ! | GATAATGAGAAAGAATGATT+AGG | + | chr5_1:54714467-54714486 | Msa0737450:intron | 25.0% |
| ! | CTTATTACTTATTGAATTGC+AGG | - | chr5_1:54714622-54714641 | Msa0737460:intron | 25.0% |
| !! | GGTGAAATTTACAATTTGTT+TGG | + | chr5_1:54714711-54714730 | Msa0737450:intron | 25.0% |
| ! | TACTTGTCTTTCAAATATGA+AGG | - | chr5_1:54714995-54715014 | Msa0737460:CDS | 25.0% |
| ! | ACTTGTCTTTCAAATATGAA+GGG | - | chr5_1:54714996-54715015 | Msa0737460:CDS | 25.0% |
| ! | TTCAAAACTCTAAGTACTAA+AGG | - | chr5_1:54715076-54715095 | Msa0737460:CDS | 25.0% |
| !!! | AACGAAAATAAGGGTTTTTT+GGG | + | chr5_1:54715234-54715253 | Msa0737450:intron | 25.0% |
| !! | GGATTTTACTTTGTAGTTTT+TGG | - | chr5_1:54715284-54715303 | Msa0737460:CDS | 25.0% |
| AACAAGATTTGGGAAAGATT+TGG | - | chr5_1:54713407-54713426 | Msa0737460:CDS | 30.0% | |
| ACAAGATTTGGGAAAGATTT+GGG | - | chr5_1:54713408-54713427 | Msa0737460:CDS | 30.0% | |
| ! | TCTGTAGATTTCAAGTATGA+AGG | - | chr5_1:54713522-54713541 | Msa0737460:CDS | 30.0% |
| !!! | AACGAAAAGAAGGGTTTTTT+GGG | + | chr5_1:54713698-54713717 | Msa0737450:intron | 30.0% |
| AAATCAATGCGAATAACGTT+TGG | - | chr5_1:54713953-54713972 | Msa0737460:intron | 30.0% | |
| TTGGATTCTTTAGATTTGCA+AGG | - | chr5_1:54713972-54713991 | Msa0737460:CDS | 30.0% | |
| TGGATTCTTTAGATTTGCAA+GGG | - | chr5_1:54713973-54713992 | Msa0737460:CDS | 30.0% | |
| ACAGCCTCTTATGTAAAAAT+AGG | - | chr5_1:54714287-54714306 | Msa0737460:intron | 30.0% | |
| CAGCCTCTTATGTAAAAATA+GGG | - | chr5_1:54714288-54714307 | Msa0737460:intron | 30.0% | |
| AAGAATAATGAACTCGTATG+TGG | + | chr5_1:54714557-54714576 | Msa0737450:intron | 30.0% | |
| ATTACTTATTGAATTGCAGG+CGG | - | chr5_1:54714625-54714644 | Msa0737460:intron | 30.0% | |
| !! | GGAATCCAAACATTTTAAGA+AGG | - | chr5_1:54714661-54714680 | Msa0737460:CDS | 30.0% |
| TATGGCCTTCTTAAAATGTT+TGG | + | chr5_1:54714669-54714688 | Msa0737450:intron | 30.0% | |
| ! | ACAATTTGTTTGGCATGAAT+GGG | + | chr5_1:54714701-54714720 | Msa0737450:intron | 30.0% |
| ! | TACAATTTGTTTGGCATGAA+TGG | + | chr5_1:54714702-54714721 | Msa0737450:intron | 30.0% |
| !! | TAACTCATCGGTTCTAATAT+AGG | + | chr5_1:54714765-54714784 | Msa0737450:intron | 30.0% |
| ! | ATTTTCCAAATTAGACCATC+CGG | + | chr5_1:54714890-54714909 | Msa0737450:intron | 30.0% |
| AAAATGGAGTTGAAGATATG+TGG | - | chr5_1:54714905-54714924 | Msa0737460:intron | 30.0% | |
| ! | ACGTTTTCTTTTGCAACAAA+TGG | - | chr5_1:54714933-54714952 | Msa0737460:intron | 30.0% |
| TGTCTAAATATGCTTCTAAG+AGG | - | chr5_1:54715182-54715201 | Msa0737460:CDS | 30.0% | |
| ! | GTCTAAATATGCTTCTAAGA+GGG | - | chr5_1:54715183-54715202 | Msa0737460:CDS | 30.0% |
| !!! | GAACGAAAATAAGGGTTTTT+TGG | + | chr5_1:54715235-54715254 | Msa0737450:intron | 30.0% |
| AGCACTTTGAACGAAAATAA+GGG | + | chr5_1:54715243-54715262 | Msa0737450:intron | 30.0% | |
| AACAAGATTTGGGAAAGATT+TGG | - | chr5_1:54713407-54713426 | Msa0737460:CDS | 30.0% | |
| ACAAGATTTGGGAAAGATTT+GGG | - | chr5_1:54713408-54713427 | Msa0737460:CDS | 30.0% | |
| ! | TCTGTAGATTTCAAGTATGA+AGG | - | chr5_1:54713522-54713541 | Msa0737460:CDS | 30.0% |
| !!! | AACGAAAAGAAGGGTTTTTT+GGG | + | chr5_1:54713698-54713717 | Msa0737450:intron | 30.0% |
| AAATCAATGCGAATAACGTT+TGG | - | chr5_1:54713953-54713972 | Msa0737460:intron | 30.0% | |
| TTGGATTCTTTAGATTTGCA+AGG | - | chr5_1:54713972-54713991 | Msa0737460:CDS | 30.0% | |
| TGGATTCTTTAGATTTGCAA+GGG | - | chr5_1:54713973-54713992 | Msa0737460:CDS | 30.0% | |
| ACAGCCTCTTATGTAAAAAT+AGG | - | chr5_1:54714287-54714306 | Msa0737460:intron | 30.0% | |
| CAGCCTCTTATGTAAAAATA+GGG | - | chr5_1:54714288-54714307 | Msa0737460:intron | 30.0% | |
| AAGAATAATGAACTCGTATG+TGG | + | chr5_1:54714557-54714576 | Msa0737450:intron | 30.0% | |
| ATTACTTATTGAATTGCAGG+CGG | - | chr5_1:54714625-54714644 | Msa0737460:intron | 30.0% | |
| !! | GGAATCCAAACATTTTAAGA+AGG | - | chr5_1:54714661-54714680 | Msa0737460:CDS | 30.0% |
| TATGGCCTTCTTAAAATGTT+TGG | + | chr5_1:54714669-54714688 | Msa0737450:intron | 30.0% | |
| ! | ACAATTTGTTTGGCATGAAT+GGG | + | chr5_1:54714701-54714720 | Msa0737450:intron | 30.0% |
| ! | TACAATTTGTTTGGCATGAA+TGG | + | chr5_1:54714702-54714721 | Msa0737450:intron | 30.0% |
| !! | TAACTCATCGGTTCTAATAT+AGG | + | chr5_1:54714765-54714784 | Msa0737450:intron | 30.0% |
| ! | ATTTTCCAAATTAGACCATC+CGG | + | chr5_1:54714890-54714909 | Msa0737450:intron | 30.0% |
| AAAATGGAGTTGAAGATATG+TGG | - | chr5_1:54714905-54714924 | Msa0737460:intron | 30.0% | |
| ! | ACGTTTTCTTTTGCAACAAA+TGG | - | chr5_1:54714933-54714952 | Msa0737460:intron | 30.0% |
| TGTCTAAATATGCTTCTAAG+AGG | - | chr5_1:54715182-54715201 | Msa0737460:CDS | 30.0% | |
| ! | GTCTAAATATGCTTCTAAGA+GGG | - | chr5_1:54715183-54715202 | Msa0737460:CDS | 30.0% |
| !!! | GAACGAAAATAAGGGTTTTT+TGG | + | chr5_1:54715235-54715254 | Msa0737450:intron | 30.0% |
| AGCACTTTGAACGAAAATAA+GGG | + | chr5_1:54715243-54715262 | Msa0737450:intron | 30.0% | |
| ! | ATGATGGAAGTAAAGAAACG+TGG | - | chr5_1:54713432-54713451 | Msa0737460:CDS | 35.0% |
| GAACACTACTCTATCTGTTA+TGG | - | chr5_1:54713495-54713514 | Msa0737460:CDS | 35.0% | |
| !!! | CTTCCCAGTTTTGAATAGAT+AGG | + | chr5_1:54713598-54713617 | Msa0737450:intron | 35.0% |
| TTCAAAACTGGGAAGACTAA+TGG | - | chr5_1:54713603-54713622 | Msa0737460:CDS | 35.0% | |
| !!! | AAAAGAAGGGTTTTTTGGGT+TGG | + | chr5_1:54713694-54713713 | Msa0737450:intron | 35.0% |
| !!! | GAACGAAAAGAAGGGTTTTT+TGG | + | chr5_1:54713699-54713718 | Msa0737450:intron | 35.0% |
| ATATCGACAGTCAAAGGATT+GGG | + | chr5_1:54713721-54713740 | Msa0737450:intron | 35.0% | |
| TTCAAGCTCCAAAATTCTCA+AGG | - | chr5_1:54713887-54713906 | Msa0737460:intron | 35.0% | |
| ! | ACTGCTTTCCTTGAGAATTT+TGG | + | chr5_1:54713898-54713917 | Msa0737450:intron | 35.0% |
| AAAATTCTCAAGGAAAGCAG+TGG | - | chr5_1:54713897-54713916 | Msa0737460:intron | 35.0% | |
| AAATTCTCAAGGAAAGCAGT+GGG | - | chr5_1:54713898-54713917 | Msa0737460:intron | 35.0% | |
| TGTGTATTGAATAAAAGCGG+TGG | - | chr5_1:54713929-54713948 | Msa0737460:intron | 35.0% | |
| AGGGAAAACAATCTATCAGA+TGG | - | chr5_1:54713992-54714011 | Msa0737460:CDS | 35.0% | |
| !!! | AGGTAGTTTTGTTGGTTGTT+AGG | - | chr5_1:54714177-54714196 | Msa0737460:intron | 35.0% |
| AGCTATCATCAATGACTGAA+AGG | - | chr5_1:54714216-54714235 | Msa0737460:intron | 35.0% | |
| TACAATACGCCAAAAATGGT+GGG | - | chr5_1:54714321-54714340 | Msa0737460:intron | 35.0% | |
| TAGCAATAAAAAGGGCAATC+TGG | + | chr5_1:54714387-54714406 | Msa0737450:intron | 35.0% | |
| GCTATCATCAATGAGCAATA+TGG | - | chr5_1:54714403-54714422 | Msa0737460:intron | 35.0% | |
| GGATGGTCTAATTTGGAAAA+TGG | - | chr5_1:54714889-54714908 | Msa0737460:intron | 35.0% | |
| AAGTGAGAGTCAAGAGAAAA+AGG | - | chr5_1:54715150-54715169 | Msa0737460:CDS | 35.0% | |
| GAGCACTTTGAACGAAAATA+AGG | + | chr5_1:54715244-54715263 | Msa0737450:intron | 35.0% | |
| ! | ATGATGGAAGTAAAGAAACG+TGG | - | chr5_1:54713432-54713451 | Msa0737460:CDS | 35.0% |
| GAACACTACTCTATCTGTTA+TGG | - | chr5_1:54713495-54713514 | Msa0737460:CDS | 35.0% | |
| !!! | CTTCCCAGTTTTGAATAGAT+AGG | + | chr5_1:54713598-54713617 | Msa0737450:intron | 35.0% |
| TTCAAAACTGGGAAGACTAA+TGG | - | chr5_1:54713603-54713622 | Msa0737460:CDS | 35.0% | |
| !!! | AAAAGAAGGGTTTTTTGGGT+TGG | + | chr5_1:54713694-54713713 | Msa0737450:intron | 35.0% |
| !!! | GAACGAAAAGAAGGGTTTTT+TGG | + | chr5_1:54713699-54713718 | Msa0737450:intron | 35.0% |
| ATATCGACAGTCAAAGGATT+GGG | + | chr5_1:54713721-54713740 | Msa0737450:intron | 35.0% | |
| TTCAAGCTCCAAAATTCTCA+AGG | - | chr5_1:54713887-54713906 | Msa0737460:intron | 35.0% | |
| ! | ACTGCTTTCCTTGAGAATTT+TGG | + | chr5_1:54713898-54713917 | Msa0737450:intron | 35.0% |
| AAAATTCTCAAGGAAAGCAG+TGG | - | chr5_1:54713897-54713916 | Msa0737460:intron | 35.0% | |
| AAATTCTCAAGGAAAGCAGT+GGG | - | chr5_1:54713898-54713917 | Msa0737460:intron | 35.0% | |
| TGTGTATTGAATAAAAGCGG+TGG | - | chr5_1:54713929-54713948 | Msa0737460:intron | 35.0% | |
| AGGGAAAACAATCTATCAGA+TGG | - | chr5_1:54713992-54714011 | Msa0737460:CDS | 35.0% | |
| !!! | AGGTAGTTTTGTTGGTTGTT+AGG | - | chr5_1:54714177-54714196 | Msa0737460:intron | 35.0% |
| AGCTATCATCAATGACTGAA+AGG | - | chr5_1:54714216-54714235 | Msa0737460:intron | 35.0% | |
| TACAATACGCCAAAAATGGT+GGG | - | chr5_1:54714321-54714340 | Msa0737460:intron | 35.0% | |
| TAGCAATAAAAAGGGCAATC+TGG | + | chr5_1:54714387-54714406 | Msa0737450:intron | 35.0% | |
| GCTATCATCAATGAGCAATA+TGG | - | chr5_1:54714403-54714422 | Msa0737460:intron | 35.0% | |
| GGATGGTCTAATTTGGAAAA+TGG | - | chr5_1:54714889-54714908 | Msa0737460:intron | 35.0% | |
| AAGTGAGAGTCAAGAGAAAA+AGG | - | chr5_1:54715150-54715169 | Msa0737460:CDS | 35.0% | |
| GAGCACTTTGAACGAAAATA+AGG | + | chr5_1:54715244-54715263 | Msa0737450:intron | 35.0% | |
| ! | ATCACCCTTCCTCTAAAGAT+TGG | - | chr5_1:54713355-54713374 | Msa0737460:CDS | 40.0% |
| ! | GTGACCAATCTTTAGAGGAA+GGG | + | chr5_1:54713362-54713381 | Msa0737450:intron | 40.0% |
| ! | AGTGACCAATCTTTAGAGGA+AGG | + | chr5_1:54713363-54713382 | Msa0737450:intron | 40.0% |
| CTGTAGTGACCAATCTTTAG+AGG | + | chr5_1:54713367-54713386 | Msa0737450:intron | 40.0% | |
| TGGGAAAGATTTGGGAATGA+TGG | - | chr5_1:54713416-54713435 | Msa0737460:CDS | 40.0% | |
| ATAGAGTAGTGTTCTGCGAA+CGG | + | chr5_1:54713489-54713508 | Msa0737450:intron | 40.0% | |
| ! | TGTTCTTTTCGGAGCAAAGT+TGG | + | chr5_1:54713652-54713671 | Msa0737450:intron | 40.0% |
| CTTTGCTCCGAAAAGAACAA+AGG | - | chr5_1:54713653-54713672 | Msa0737460:CDS | 40.0% | |
| ! | GCAGCATCCTTTGTTCTTTT+CGG | + | chr5_1:54713663-54713682 | Msa0737450:intron | 40.0% |
| !!! | GTTTTTTGGGTTGGTTCCAT+TGG | + | chr5_1:54713685-54713704 | Msa0737450:intron | 40.0% |
| AGGATTGGGAACGAAAAGAA+GGG | + | chr5_1:54713707-54713726 | Msa0737450:intron | 40.0% | |
| AAGGATTGGGAACGAAAAGA+AGG | + | chr5_1:54713708-54713727 | Msa0737450:intron | 40.0% | |
| CATATCGACAGTCAAAGGAT+TGG | + | chr5_1:54713722-54713741 | Msa0737450:intron | 40.0% | |
| ATCCTTTGACTGTCGATATG+CGG | - | chr5_1:54713722-54713741 | Msa0737460:CDS | 40.0% | |
| AGCAGGAACATACTACACAA+TGG | + | chr5_1:54713831-54713850 | Msa0737450:intron | 40.0% | |
| TGGAGCTTGAACAGAACATT+TGG | + | chr5_1:54713878-54713897 | Msa0737450:intron | 40.0% | |
| ACGAGTTTGAGCTTATCAAG+AGG | - | chr5_1:54714023-54714042 | Msa0737460:intron | 40.0% | |
| GTAACTTAGAACAGAACACG+CGG | + | chr5_1:54714052-54714071 | Msa0737450:intron | 40.0% | |
| CTAAGTTACAGCTTCTCACA+CGG | - | chr5_1:54714063-54714082 | Msa0737460:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr5_1:54714243-54714262 | Msa0737460:intron | 40.0% | |
| ! | TTACATAAGAGGCTGTTTCC+AGG | + | chr5_1:54714283-54714302 | Msa0737450:intron | 40.0% |
| TGCGTACAATACGCCAAAAA+TGG | - | chr5_1:54714317-54714336 | Msa0737460:intron | 40.0% | |
| GTACAATACGCCAAAAATGG+TGG | - | chr5_1:54714320-54714339 | Msa0737460:intron | 40.0% | |
| TGTTGCTACAGTTACTGTTC+CGG | - | chr5_1:54714868-54714887 | Msa0737460:intron | 40.0% | |
| GGACTATGACACTCTTTGTT+TGG | + | chr5_1:54715106-54715125 | Msa0737450:intron | 40.0% | |
| !! | ACAAAGAGTGTCATAGTCCT+AGG | - | chr5_1:54715107-54715126 | Msa0737460:CDS | 40.0% |
| AGTGTCATAGTCCTAGGAAA+AGG | - | chr5_1:54715113-54715132 | Msa0737460:CDS | 40.0% | |
| !!! | GTTTTTTGGGCTGAATGCAT+TGG | + | chr5_1:54715221-54715240 | Msa0737450:intron | 40.0% |
| ! | TTTCGTTCAAAGTGCTCCAA+AGG | - | chr5_1:54715247-54715266 | Msa0737460:CDS | 40.0% |
| ! | ATCACCCTTCCTCTAAAGAT+TGG | - | chr5_1:54713355-54713374 | Msa0737460:CDS | 40.0% |
| ! | GTGACCAATCTTTAGAGGAA+GGG | + | chr5_1:54713362-54713381 | Msa0737450:intron | 40.0% |
| ! | AGTGACCAATCTTTAGAGGA+AGG | + | chr5_1:54713363-54713382 | Msa0737450:intron | 40.0% |
| CTGTAGTGACCAATCTTTAG+AGG | + | chr5_1:54713367-54713386 | Msa0737450:intron | 40.0% | |
| TGGGAAAGATTTGGGAATGA+TGG | - | chr5_1:54713416-54713435 | Msa0737460:CDS | 40.0% | |
| ATAGAGTAGTGTTCTGCGAA+CGG | + | chr5_1:54713489-54713508 | Msa0737450:intron | 40.0% | |
| ! | TGTTCTTTTCGGAGCAAAGT+TGG | + | chr5_1:54713652-54713671 | Msa0737450:intron | 40.0% |
| CTTTGCTCCGAAAAGAACAA+AGG | - | chr5_1:54713653-54713672 | Msa0737460:CDS | 40.0% | |
| ! | GCAGCATCCTTTGTTCTTTT+CGG | + | chr5_1:54713663-54713682 | Msa0737450:intron | 40.0% |
| !!! | GTTTTTTGGGTTGGTTCCAT+TGG | + | chr5_1:54713685-54713704 | Msa0737450:intron | 40.0% |
| AGGATTGGGAACGAAAAGAA+GGG | + | chr5_1:54713707-54713726 | Msa0737450:intron | 40.0% | |
| AAGGATTGGGAACGAAAAGA+AGG | + | chr5_1:54713708-54713727 | Msa0737450:intron | 40.0% | |
| CATATCGACAGTCAAAGGAT+TGG | + | chr5_1:54713722-54713741 | Msa0737450:intron | 40.0% | |
| ATCCTTTGACTGTCGATATG+CGG | - | chr5_1:54713722-54713741 | Msa0737460:CDS | 40.0% | |
| AGCAGGAACATACTACACAA+TGG | + | chr5_1:54713831-54713850 | Msa0737450:intron | 40.0% | |
| TGGAGCTTGAACAGAACATT+TGG | + | chr5_1:54713878-54713897 | Msa0737450:intron | 40.0% | |
| ACGAGTTTGAGCTTATCAAG+AGG | - | chr5_1:54714023-54714042 | Msa0737460:intron | 40.0% | |
| GTAACTTAGAACAGAACACG+CGG | + | chr5_1:54714052-54714071 | Msa0737450:intron | 40.0% | |
| CTAAGTTACAGCTTCTCACA+CGG | - | chr5_1:54714063-54714082 | Msa0737460:intron | 40.0% | |
| GTTGTTGTCATGTGACTGAA+AGG | - | chr5_1:54714243-54714262 | Msa0737460:intron | 40.0% | |
| ! | TTACATAAGAGGCTGTTTCC+AGG | + | chr5_1:54714283-54714302 | Msa0737450:intron | 40.0% |
| TGCGTACAATACGCCAAAAA+TGG | - | chr5_1:54714317-54714336 | Msa0737460:intron | 40.0% | |
| GTACAATACGCCAAAAATGG+TGG | - | chr5_1:54714320-54714339 | Msa0737460:intron | 40.0% | |
| TGTTGCTACAGTTACTGTTC+CGG | - | chr5_1:54714868-54714887 | Msa0737460:intron | 40.0% | |
| GGACTATGACACTCTTTGTT+TGG | + | chr5_1:54715106-54715125 | Msa0737450:intron | 40.0% | |
| !! | ACAAAGAGTGTCATAGTCCT+AGG | - | chr5_1:54715107-54715126 | Msa0737460:CDS | 40.0% |
| AGTGTCATAGTCCTAGGAAA+AGG | - | chr5_1:54715113-54715132 | Msa0737460:CDS | 40.0% | |
| !!! | GTTTTTTGGGCTGAATGCAT+TGG | + | chr5_1:54715221-54715240 | Msa0737450:intron | 40.0% |
| ! | TTTCGTTCAAAGTGCTCCAA+AGG | - | chr5_1:54715247-54715266 | Msa0737460:CDS | 40.0% |
| TTGGAAGAACGCGTTGTGTT+TGG | + | chr5_1:54713633-54713652 | Msa0737450:intron | 45.0% | |
| AGAACAAAGGATGCTGCCAA+TGG | - | chr5_1:54713666-54713685 | Msa0737460:CDS | 45.0% | |
| TACTTTGCAGCGAATTCAGC+AGG | + | chr5_1:54713848-54713867 | Msa0737450:intron | 45.0% | |
| AAGGTCATGTGTTCAAGTCC+TGG | - | chr5_1:54714262-54714281 | Msa0737460:intron | 45.0% | |
| TATTGAATTGCAGGCGGAGA+AGG | - | chr5_1:54714631-54714650 | Msa0737460:CDS | 45.0% | |
| !! | ATGAATGGGTGACGGAAGTA+TGG | + | chr5_1:54714687-54714706 | Msa0737450:intron | 45.0% |
| TGTTTGGCATGAATGGGTGA+CGG | + | chr5_1:54714695-54714714 | Msa0737450:intron | 45.0% | |
| CTGTTCCGGATGGTCTAATT+TGG | - | chr5_1:54714882-54714901 | Msa0737460:intron | 45.0% | |
| GGAGTTGAAGATATGTGGCA+AGG | - | chr5_1:54714910-54714929 | Msa0737460:intron | 45.0% | |
| TAGTCCTAGGAAAAGGTCCA+AGG | - | chr5_1:54715120-54715139 | Msa0737460:CDS | 45.0% | |
| ACTCTCACTTGTTTCGACCT+TGG | + | chr5_1:54715140-54715159 | Msa0737450:intron | 45.0% | |
| ! | ATATGCTTCTAAGAGGGCTG+AGG | - | chr5_1:54715189-54715208 | Msa0737460:CDS | 45.0% |
| GTGCTCCAAAGGAAGATATG+TGG | - | chr5_1:54715258-54715277 | Msa0737460:CDS | 45.0% | |
| CCTCACCACATATCTTCCTT+TGG | + | chr5_1:54715266-54715285 | Msa0737450:intron | 45.0% | |
| CCAAAGGAAGATATGTGGTG+AGG | - | chr5_1:54715263-54715282 | Msa0737460:CDS | 45.0% | |
| !!! | TTGTAGTTTTTGGTTCCGCG+TGG | - | chr5_1:54715294-54715313 | Msa0737460:CDS | 45.0% |
| AATCACGATAGTCAACCACG+CGG | + | chr5_1:54715312-54715331 | Msa0737450:intron | 45.0% | |
| TTGGAAGAACGCGTTGTGTT+TGG | + | chr5_1:54713633-54713652 | Msa0737450:intron | 45.0% | |
| AGAACAAAGGATGCTGCCAA+TGG | - | chr5_1:54713666-54713685 | Msa0737460:CDS | 45.0% | |
| TACTTTGCAGCGAATTCAGC+AGG | + | chr5_1:54713848-54713867 | Msa0737450:intron | 45.0% | |
| AAGGTCATGTGTTCAAGTCC+TGG | - | chr5_1:54714262-54714281 | Msa0737460:intron | 45.0% | |
| TATTGAATTGCAGGCGGAGA+AGG | - | chr5_1:54714631-54714650 | Msa0737460:CDS | 45.0% | |
| !! | ATGAATGGGTGACGGAAGTA+TGG | + | chr5_1:54714687-54714706 | Msa0737450:intron | 45.0% |
| TGTTTGGCATGAATGGGTGA+CGG | + | chr5_1:54714695-54714714 | Msa0737450:intron | 45.0% | |
| CTGTTCCGGATGGTCTAATT+TGG | - | chr5_1:54714882-54714901 | Msa0737460:intron | 45.0% | |
| GGAGTTGAAGATATGTGGCA+AGG | - | chr5_1:54714910-54714929 | Msa0737460:intron | 45.0% | |
| TAGTCCTAGGAAAAGGTCCA+AGG | - | chr5_1:54715120-54715139 | Msa0737460:CDS | 45.0% | |
| ACTCTCACTTGTTTCGACCT+TGG | + | chr5_1:54715140-54715159 | Msa0737450:intron | 45.0% | |
| ! | ATATGCTTCTAAGAGGGCTG+AGG | - | chr5_1:54715189-54715208 | Msa0737460:CDS | 45.0% |
| GTGCTCCAAAGGAAGATATG+TGG | - | chr5_1:54715258-54715277 | Msa0737460:CDS | 45.0% | |
| CCTCACCACATATCTTCCTT+TGG | + | chr5_1:54715266-54715285 | Msa0737450:intron | 45.0% | |
| CCAAAGGAAGATATGTGGTG+AGG | - | chr5_1:54715263-54715282 | Msa0737460:CDS | 45.0% | |
| !!! | TTGTAGTTTTTGGTTCCGCG+TGG | - | chr5_1:54715294-54715313 | Msa0737460:CDS | 45.0% |
| AATCACGATAGTCAACCACG+CGG | + | chr5_1:54715312-54715331 | Msa0737450:intron | 45.0% | |
| CACCGCATATCGACAGTCAA+AGG | + | chr5_1:54713727-54713746 | Msa0737450:intron | 50.0% | |
| CTAAAGCTCCCGCATACTCA+GGG | + | chr5_1:54714360-54714379 | Msa0737450:intron | 50.0% | |
| ACTAAAGCTCCCGCATACTC+AGG | + | chr5_1:54714361-54714380 | Msa0737450:intron | 50.0% | |
| TGAGAGATAGAGAGAGCGAG+AGG | + | chr5_1:54714732-54714751 | Msa0737450:intron | 50.0% | |
| GCTACAGTTACTGTTCCGGA+TGG | - | chr5_1:54714872-54714891 | Msa0737460:intron | 50.0% | |
| ! | TCGACCTTGGACCTTTTCCT+AGG | + | chr5_1:54715127-54715146 | Msa0737450:intron | 50.0% |
| CACCGCATATCGACAGTCAA+AGG | + | chr5_1:54713727-54713746 | Msa0737450:intron | 50.0% | |
| CTAAAGCTCCCGCATACTCA+GGG | + | chr5_1:54714360-54714379 | Msa0737450:intron | 50.0% | |
| ACTAAAGCTCCCGCATACTC+AGG | + | chr5_1:54714361-54714380 | Msa0737450:intron | 50.0% | |
| TGAGAGATAGAGAGAGCGAG+AGG | + | chr5_1:54714732-54714751 | Msa0737450:intron | 50.0% | |
| GCTACAGTTACTGTTCCGGA+TGG | - | chr5_1:54714872-54714891 | Msa0737460:intron | 50.0% | |
| ! | TCGACCTTGGACCTTTTCCT+AGG | + | chr5_1:54715127-54715146 | Msa0737450:intron | 50.0% |
| ! | GGAAGGGGTCCCACCATTTT+TGG | + | chr5_1:54714333-54714352 | Msa0737450:intron | 55.0% |
| ! | AAAATGGTGGGACCCCTTCC+CGG | - | chr5_1:54714333-54714352 | Msa0737460:intron | 55.0% |
| TGCAGGCGGAGAAGGAAGTT+AGG | - | chr5_1:54714639-54714658 | Msa0737460:CDS | 55.0% | |
| GCAGGCGGAGAAGGAAGTTA+GGG | - | chr5_1:54714640-54714659 | Msa0737460:CDS | 55.0% | |
| ! | GGAAGGGGTCCCACCATTTT+TGG | + | chr5_1:54714333-54714352 | Msa0737450:intron | 55.0% |
| ! | AAAATGGTGGGACCCCTTCC+CGG | - | chr5_1:54714333-54714352 | Msa0737460:intron | 55.0% |
| TGCAGGCGGAGAAGGAAGTT+AGG | - | chr5_1:54714639-54714658 | Msa0737460:CDS | 55.0% | |
| GCAGGCGGAGAAGGAAGTTA+GGG | - | chr5_1:54714640-54714659 | Msa0737460:CDS | 55.0% | |
| CATACTCAGGGTCCGGGAAG+GGG | + | chr5_1:54714348-54714367 | Msa0737450:intron | 60.0% | |
| GCATACTCAGGGTCCGGGAA+GGG | + | chr5_1:54714349-54714368 | Msa0737450:intron | 60.0% | |
| CTTCCCGGACCCTGAGTATG+CGG | - | chr5_1:54714348-54714367 | Msa0737460:intron | 60.0% | |
| TTCCCGGACCCTGAGTATGC+GGG | - | chr5_1:54714349-54714368 | Msa0737460:intron | 60.0% | |
| CATACTCAGGGTCCGGGAAG+GGG | + | chr5_1:54714348-54714367 | Msa0737450:intron | 60.0% | |
| GCATACTCAGGGTCCGGGAA+GGG | + | chr5_1:54714349-54714368 | Msa0737450:intron | 60.0% | |
| CTTCCCGGACCCTGAGTATG+CGG | - | chr5_1:54714348-54714367 | Msa0737460:intron | 60.0% | |
| TTCCCGGACCCTGAGTATGC+GGG | - | chr5_1:54714349-54714368 | Msa0737460:intron | 60.0% | |
| CGCATACTCAGGGTCCGGGA+AGG | + | chr5_1:54714350-54714369 | Msa0737450:intron | 65.0% | |
| CTCCCGCATACTCAGGGTCC+GGG | + | chr5_1:54714354-54714373 | Msa0737450:intron | 65.0% | |
| GCTCCCGCATACTCAGGGTC+CGG | + | chr5_1:54714355-54714374 | Msa0737450:intron | 65.0% | |
| CGCATACTCAGGGTCCGGGA+AGG | + | chr5_1:54714350-54714369 | Msa0737450:intron | 65.0% | |
| CTCCCGCATACTCAGGGTCC+GGG | + | chr5_1:54714354-54714373 | Msa0737450:intron | 65.0% | |
| GCTCCCGCATACTCAGGGTC+CGG | + | chr5_1:54714355-54714374 | Msa0737450:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 54713351 | 54715333 | 54713351 | ID=Msa0737460;Name=Msa0737460 |
| chr5_1 | mRNA | 54713351 | 54715333 | 54713351 | ID=Msa0737460-mRNA-1;Parent=Msa0737460;Name=Msa0737460-mRNA-1;_AED=0.09;_eAED=0.09;_QI=0|0.66|0|1|1|1|4|0|398 |
| chr5_1 | exon | 54714941 | 54715333 | 54714941 | ID=Msa0737460-mRNA-1:exon:15410;Parent=Msa0737460-mRNA-1 |
| chr5_1 | exon | 54714630 | 54714845 | 54714630 | ID=Msa0737460-mRNA-1:exon:15409;Parent=Msa0737460-mRNA-1 |
| chr5_1 | exon | 54713966 | 54714040 | 54713966 | ID=Msa0737460-mRNA-1:exon:15408;Parent=Msa0737460-mRNA-1 |
| chr5_1 | exon | 54713351 | 54713863 | 54713351 | ID=Msa0737460-mRNA-1:exon:15407;Parent=Msa0737460-mRNA-1 |
| chr5_1 | CDS | 54714941 | 54715333 | 54714941 | ID=Msa0737460-mRNA-1:cds;Parent=Msa0737460-mRNA-1 |
| chr5_1 | CDS | 54714630 | 54714845 | 54714630 | ID=Msa0737460-mRNA-1:cds;Parent=Msa0737460-mRNA-1 |
| chr5_1 | CDS | 54713966 | 54714040 | 54713966 | ID=Msa0737460-mRNA-1:cds;Parent=Msa0737460-mRNA-1 |
| chr5_1 | CDS | 54713351 | 54713863 | 54713351 | ID=Msa0737460-mRNA-1:cds;Parent=Msa0737460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
