AlfalfaGEDB | Msa0738370

M. sativa cultivar zhongmu-4 / Msa0738370

KEGG: -
GO: GO:0000976 GO:0000987 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009555 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010208 GO:0010468 GO:0010556 GO:0010927 GO:0016043 GO:0019219 GO:0019222 GO:0022607 GO:0022622 GO:0023052 GO:0030198 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0032870 GO:0032989 GO:0033036 GO:0033037 GO:0042221 GO:0042545 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044085 GO:0044212 GO:0044424 GO:0044464 GO:0045229 GO:0048229 GO:0048364 GO:0048646 GO:0048731 GO:0048830 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051179 GO:0051252 GO:0051641 GO:0051716 GO:0052386 GO:0052543 GO:0052545 GO:0060255 GO:0065007 GO:0070727 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071554 GO:0071555 GO:0071840 GO:0080090 GO:0085029 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:1990837 GO:2000112 GO:2001141
PFAM: PF02362.24

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738370	XP_003616592.1	89.978	459	44	1	1	457	1	459	0.0	821

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738370	sp\|Q84WU6\|ARFQ_ARATH	36.216	555	230	16	9	457	16	552	2.10e-96	304

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738370	G7KGW8	89.978	459	44	1	1	457	1	459	0.0	821

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TFs/TRs:

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Gene ID	Type	Classification
Msa0738370	TF	B3-ARF

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738370	MtrunA17_Chr5g0436761	89.978	459	44	1	1	457	1	459	0.0	821
Msa0738370	MtrunA17_Chr5g0417281	52.071	507	179	9	8	455	7	508	2.55e-165	476
Msa0738370	MtrunA17_Chr5g0417211	55.076	463	138	7	1	456	1	400	1.14e-159	457
Msa0738370	MtrunA17_Chr5g0424931	50.482	519	181	10	6	457	13	522	5.61e-158	457
Msa0738370	MtrunA17_Chr2g0289221	62.342	316	114	4	1	314	9	321	3.67e-135	393
Msa0738370	MtrunA17_Chr1g0178011	47.109	467	209	11	1	454	1	442	2.99e-132	389
Msa0738370	MtrunA17_Chr2g0277461	44.111	467	222	13	4	456	5	446	3.35e-108	328
Msa0738370	MtrunA17_Chr3g0115271	37.658	555	235	13	3	457	10	553	3.21e-101	314
Msa0738370	MtrunA17_Chr5g0424741	40.937	491	203	16	5	415	5	488	1.43e-98	305
Msa0738370	MtrunA17_Chr5g0425261	48.397	343	152	7	6	335	6	336	3.50e-97	297

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0738370	AT1G77850.1	36.216	555	230	16	9	457	16	552	2.14e-97	304
Msa0738370	AT1G77850.2	36.216	555	230	16	9	457	16	552	3.07e-97	304
Msa0738370	AT4G30080.1	38.732	426	180	11	9	370	16	424	1.99e-83	270
Msa0738370	AT2G28350.2	38.725	408	180	10	9	356	7	404	1.87e-78	257
Msa0738370	AT2G28350.1	38.725	408	180	10	9	356	7	404	2.12e-78	258
Msa0738370	AT5G37020.2	35.246	366	203	11	9	351	19	373	5.54e-62	215
Msa0738370	AT5G37020.1	35.246	366	203	11	9	351	19	373	1.02e-61	215
Msa0738370	AT1G30330.3	34.959	369	192	11	9	347	22	372	1.10e-58	207
Msa0738370	AT1G30330.2	34.959	369	192	11	9	347	22	372	1.10e-58	207
Msa0738370	AT1G30330.1	34.959	369	192	11	9	347	20	370	1.18e-58	207

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Find 115 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTTGAGAATTTAGTTT+CGG	0.371328	5_1:+56135572	None:intergenic
AAAATCTGGCAGTGCTTGGC+CGG	0.457026	5_1:-56135611	Msa0738370:CDS
AAATTGTGGATGTCCTTGAC+CGG	0.574466	5_1:+56135188	None:intergenic
AACGAACTTACTCCAGTTAG+TGG	0.466764	5_1:+56135112	None:intergenic
AACTCTATCTCTGGAATGGA+GGG	0.529089	5_1:+56133440	None:intergenic
AACTTTCGCCACACCTACCG+TGG	0.527055	5_1:-56135158	Msa0738370:CDS
AAGAAAGCTTAGAATTGCTC+AGG	0.459328	5_1:-56133492	Msa0738370:CDS
AAGAAATTGAACTCTATCTC+TGG	0.424200	5_1:+56133431	None:intergenic
AAGACGAACAAGGTGGTGAT+GGG	0.566040	5_1:-56135343	Msa0738370:CDS
AAGTACCTGAGATGGCATTT+GGG	0.471977	5_1:+56135211	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GAAAGTTCCAAACAAAATTG+TGG	+	chr5_1:56133657-56133676	None:intergenic	30.0%
GACACAAAGAAAATTATTGG+CGG	-	chr5_1:56133739-56133758	Msa0738370:intron	30.0%
GATAAAGATGAGATCTTCAT+CGG	-	chr5_1:56133799-56133818	Msa0738370:intron	30.0%
ATGCAAATTAATTGGCAATC+TGG	-	chr5_1:56133985-56134004	Msa0738370:intron	30.0%
TGTATACATAAGACTAGAGT+CGG	-	chr5_1:56134551-56134570	Msa0738370:intron	30.0%
TGGAAGAAACACAAGATAAT+AGG	+	chr5_1:56134630-56134649	None:intergenic	30.0%
TATATTTAAGGGGTTCAAGA+TGG	+	chr5_1:56134650-56134669	None:intergenic	30.0%
ATCTTGAACCCCTTAAATAT+AGG	-	chr5_1:56134649-56134668	Msa0738370:intron	30.0%
TCTTGAACCCCTTAAATATA+GGG	-	chr5_1:56134650-56134669	Msa0738370:intron	30.0%
AAGATAATTTCACACCTACA+TGG	-	chr5_1:56134922-56134941	Msa0738370:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	56133184	56135666	56133184	ID=Msa0738370;Name=Msa0738370
chr5_1	mRNA	56133184	56135666	56133184	ID=Msa0738370-mRNA-1;Parent=Msa0738370;Name=Msa0738370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0\|0\|1\|1\|1\|2\|0\|458
chr5_1	exon	56134728	56135666	56134728	ID=Msa0738370-mRNA-1:exon:15906;Parent=Msa0738370-mRNA-1
chr5_1	exon	56133184	56133621	56133184	ID=Msa0738370-mRNA-1:exon:15905;Parent=Msa0738370-mRNA-1
chr5_1	CDS	56134728	56135666	56134728	ID=Msa0738370-mRNA-1:cds;Parent=Msa0738370-mRNA-1
chr5_1	CDS	56133184	56133621	56133184	ID=Msa0738370-mRNA-1:cds;Parent=Msa0738370-mRNA-1

Gene Sequence

>Msa0738370

ATGGATCCTCAGAAACCCACCCGTGTTGATCGAAAAATCTGGCAGTGCTTGGCCGGACCATCGGTCAAAATTCCGAAACTAAATTCTCAAGTTTTTTACTTTCCACTAGGTCACTTGGAACATGCATGCCCTTCCCCTAACACCGAGACACTCTCCCTTATCAATGGTTACCGTTCCATCATTCCCTGCGTCGTCTCCCACGTTGATCTCTTAGCTGATCTTCAAACCGATGAAGTCTTTGCAAAACTGCTTCTAACTCCCATCACCAATGGTTTTCCCGAAGCTCCTCAGGAGGTTCATGAAGACGAACAAGGTGGTGATGGGCTTGTTTTTTCTGGCAAGACTCTCACCCCGTCTGATGCTAATAACGGTGGTGCATTCTCCGTACCTTCTGAATGCGCGAAATTGATATTCCCGCCACTTGACCTACAATCCCAAATGCCATCTCAGGTACTTCCGGTCAAGGACATCCACAATTTTGTTTGGAACTTTCGCCACACCTACCGTGGGTCTCCCAAGCGACACCTAATCACCACTAACTGGAGTAAGTTCGTTGACACAAAGAAAATTATTGGCGGCGATTCCCTCGTTTTAATGAAAAATTCTAAAGATAAAGATAAAGATGAGATCTTCATCGGAATCCGCAGGCACAAGTTAAGTGCTGCTGCTAAGATAACGGAAAAATCCGTTATGGAGGCAGCAGAGTTGGCGGATAAGGACATGACTTTTGAAGTTATTTATTATCCGACGGCTAGTCATTGGTGTAATTTTGTGGTGGAAGCTGAAGTTGTAAAGAAAGCAATGCAAATTAATTGGCAATCTGGAATGAGAGTTAAACTTTGTTTGAAGACTGATGAATCTTCAAAGAGAAGCTCAATTTTTCAAGGGACAGTATCTGCTTTATCTGATCCTTCTCATCATCCATGGCGCATGCTTCAGGTTAACTGGGATGAATCTGAAGTCTCTCAAAATCCAAGTCAAGTAAGTCCTTGGCAGATTGAACTTATTTCCCACACTCCAGCACTGCCTCTACAATTCCCCCCACAAAGAAAGCTTAGAATTGCTCAGGGCTCTGCCTTATCAACTAACATAGAGAGACCCTCCATTCCAGAGATAGAGTTCAATTTCTTAAACCCAACGTCGTTGAATTATAATGCTTTTCTTGATAGCATGAAGGGAACCATGCCTAATCTTTTTTCTGCCTCAACTTCTTCGAACTCTTTGAATGATAATGGCAATGGTTTTGTTGAAGGTACCCACAACCTCAACACCAAAAAAGTTAATCCTCGTTCTATTAAGCTATTTGGTAAGACCATAGAGATTGTAGAAAAGGATTTGCATGAGTCTGGTATCAATGGAGAGGATGGTTCCGGATAA

Protein sequence

>Msa0738370

MDPQKPTRVDRKIWQCLAGPSVKIPKLNSQVFYFPLGHLEHACPSPNTETLSLINGYRSIIPCVVSHVDLLADLQTDEVFAKLLLTPITNGFPEAPQEVHEDEQGGDGLVFSGKTLTPSDANNGGAFSVPSECAKLIFPPLDLQSQMPSQVLPVKDIHNFVWNFRHTYRGSPKRHLITTNWSKFVDTKKIIGGDSLVLMKNSKDKDKDEIFIGIRRHKLSAAAKITEKSVMEAAELADKDMTFEVIYYPTASHWCNFVVEAEVVKKAMQINWQSGMRVKLCLKTDESSKRSSIFQGTVSALSDPSHHPWRMLQVNWDESEVSQNPSQVSPWQIELISHTPALPLQFPPQRKLRIAQGSALSTNIERPSIPEIEFNFLNPTSLNYNAFLDSMKGTMPNLFSASTSSNSLNDNGNGFVEGTHNLNTKKVNPRSIKLFGKTIEIVEKDLHESGINGEDGSG*