Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739150 | XP_003616871.1 | 99.052 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 0.0 | 868 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739150 | sp|Q94AD9|C3H3_ARATH | 45.060 | 415 | 188 | 9 | 1 | 407 | 5 | 387 | 3.11e-114 | 343 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739150 | G7KH86 | 99.052 | 422 | 4 | 0 | 1 | 422 | 1 | 422 | 0.0 | 868 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0739150 | TF | C3H |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739150 | MtrunA17_Chr5g0438891 | 99.002 | 401 | 4 | 0 | 22 | 422 | 14 | 414 | 0.0 | 825 |
| Msa0739150 | MtrunA17_Chr7g0249221 | 43.440 | 343 | 154 | 10 | 40 | 350 | 23 | 357 | 8.34e-90 | 278 |
| Msa0739150 | MtrunA17_Chr3g0116431 | 38.806 | 335 | 163 | 11 | 44 | 358 | 171 | 483 | 1.16e-66 | 221 |
| Msa0739150 | MtrunA17_Chr4g0058011 | 37.695 | 321 | 169 | 11 | 44 | 347 | 231 | 537 | 2.83e-66 | 221 |
| Msa0739150 | MtrunA17_Chr1g0195891 | 35.780 | 327 | 173 | 8 | 19 | 318 | 27 | 343 | 7.40e-63 | 206 |
| Msa0739150 | MtrunA17_Chr1g0195891 | 55.263 | 76 | 30 | 2 | 271 | 343 | 92 | 166 | 2.14e-18 | 85.9 |
| Msa0739150 | MtrunA17_Chr2g0286151 | 37.681 | 345 | 170 | 12 | 44 | 348 | 44 | 383 | 1.99e-60 | 203 |
| Msa0739150 | MtrunA17_Chr2g0286151 | 44.578 | 83 | 45 | 1 | 84 | 165 | 42 | 124 | 2.96e-18 | 86.7 |
| Msa0739150 | MtrunA17_Chr2g0286151 | 34.615 | 130 | 36 | 2 | 269 | 349 | 43 | 172 | 9.11e-15 | 75.9 |
| Msa0739150 | MtrunA17_Chr8g0356241 | 33.428 | 353 | 137 | 9 | 34 | 343 | 177 | 474 | 5.41e-55 | 190 |
| Msa0739150 | MtrunA17_Chr4g0066941 | 36.471 | 340 | 155 | 13 | 44 | 343 | 43 | 361 | 1.70e-46 | 167 |
| Msa0739150 | MtrunA17_Chr4g0066941 | 36.599 | 347 | 186 | 13 | 26 | 344 | 66 | 406 | 3.70e-46 | 166 |
| Msa0739150 | MtrunA17_Chr4g0066941 | 48.148 | 81 | 42 | 0 | 84 | 164 | 41 | 121 | 8.28e-19 | 88.6 |
| Msa0739150 | MtrunA17_Chr4g0066941 | 45.570 | 79 | 42 | 1 | 269 | 346 | 42 | 120 | 4.83e-15 | 77.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0739150 | AT1G04990.1 | 45.060 | 415 | 188 | 9 | 1 | 407 | 5 | 387 | 3.17e-115 | 343 |
| Msa0739150 | AT1G04990.6 | 45.060 | 415 | 188 | 9 | 1 | 407 | 5 | 387 | 3.17e-115 | 343 |
| Msa0739150 | AT1G04990.2 | 45.060 | 415 | 188 | 9 | 1 | 407 | 5 | 387 | 3.17e-115 | 343 |
| Msa0739150 | AT2G32930.2 | 45.116 | 430 | 186 | 14 | 1 | 408 | 1 | 402 | 8.04e-109 | 328 |
| Msa0739150 | AT1G04990.5 | 42.482 | 419 | 184 | 10 | 1 | 403 | 5 | 382 | 2.71e-106 | 319 |
| Msa0739150 | AT2G32930.1 | 44.159 | 428 | 189 | 14 | 1 | 408 | 1 | 398 | 2.48e-103 | 314 |
| Msa0739150 | AT2G32930.3 | 44.712 | 416 | 180 | 14 | 27 | 420 | 1 | 388 | 1.74e-102 | 311 |
| Msa0739150 | AT3G02830.1 | 39.066 | 407 | 186 | 17 | 21 | 392 | 18 | 397 | 4.63e-84 | 263 |
| Msa0739150 | AT3G02830.2 | 40.051 | 392 | 177 | 16 | 36 | 392 | 9 | 377 | 1.30e-83 | 261 |
| Msa0739150 | AT2G47850.1 | 38.701 | 354 | 183 | 9 | 19 | 350 | 27 | 368 | 1.50e-80 | 256 |
| Msa0739150 | AT2G47850.3 | 38.701 | 354 | 183 | 9 | 19 | 350 | 27 | 368 | 1.50e-80 | 256 |
| Msa0739150 | AT5G18550.3 | 42.683 | 328 | 154 | 13 | 44 | 342 | 16 | 338 | 2.20e-80 | 254 |
| Msa0739150 | AT5G18550.3 | 39.175 | 97 | 48 | 3 | 269 | 354 | 15 | 111 | 8.28e-16 | 79.3 |
| Msa0739150 | AT5G18550.1 | 42.683 | 328 | 154 | 13 | 44 | 342 | 48 | 370 | 2.75e-80 | 255 |
| Msa0739150 | AT5G18550.1 | 39.175 | 97 | 48 | 3 | 269 | 354 | 47 | 143 | 6.51e-16 | 79.7 |
| Msa0739150 | AT5G18550.4 | 42.683 | 328 | 154 | 13 | 44 | 342 | 48 | 370 | 3.78e-80 | 254 |
| Msa0739150 | AT5G18550.4 | 39.175 | 97 | 48 | 3 | 269 | 354 | 47 | 143 | 7.33e-16 | 79.7 |
| Msa0739150 | AT5G16540.1 | 39.601 | 351 | 170 | 12 | 44 | 383 | 39 | 358 | 1.48e-77 | 245 |
| Msa0739150 | AT5G16540.1 | 43.038 | 79 | 44 | 1 | 266 | 343 | 35 | 113 | 1.72e-14 | 75.1 |
| Msa0739150 | AT5G16540.1 | 36.471 | 85 | 46 | 2 | 37 | 115 | 233 | 315 | 9.64e-14 | 72.8 |
| Msa0739150 | AT5G16540.3 | 38.965 | 367 | 179 | 12 | 44 | 396 | 18 | 353 | 2.08e-77 | 244 |
| Msa0739150 | AT5G16540.3 | 43.038 | 79 | 44 | 1 | 266 | 343 | 14 | 92 | 1.69e-14 | 74.7 |
| Msa0739150 | AT5G16540.3 | 36.471 | 85 | 46 | 2 | 37 | 115 | 212 | 294 | 1.24e-13 | 72.4 |
| Msa0739150 | AT3G06410.1 | 38.843 | 363 | 169 | 12 | 20 | 342 | 29 | 378 | 2.43e-77 | 248 |
| Msa0739150 | AT3G06410.1 | 44.156 | 77 | 41 | 1 | 269 | 343 | 50 | 126 | 5.57e-16 | 80.1 |
| Msa0739150 | AT1G04990.3 | 42.006 | 319 | 150 | 7 | 96 | 407 | 16 | 306 | 7.59e-76 | 239 |
| Msa0739150 | AT1G04990.3 | 40.909 | 88 | 51 | 1 | 74 | 160 | 165 | 252 | 1.47e-13 | 71.6 |
| Msa0739150 | AT5G18550.2 | 41.284 | 327 | 147 | 13 | 44 | 342 | 48 | 357 | 3.29e-73 | 236 |
| Msa0739150 | AT5G18550.2 | 39.175 | 97 | 48 | 3 | 269 | 354 | 47 | 143 | 5.94e-16 | 80.1 |
| Msa0739150 | AT5G16540.2 | 38.329 | 347 | 173 | 11 | 44 | 383 | 39 | 351 | 1.72e-72 | 232 |
| Msa0739150 | AT5G16540.2 | 43.038 | 79 | 44 | 1 | 266 | 343 | 35 | 113 | 1.62e-14 | 75.1 |
| Msa0739150 | AT5G16540.2 | 35.366 | 82 | 44 | 2 | 37 | 115 | 233 | 308 | 8.27e-12 | 66.6 |
| Msa0739150 | AT3G48440.1 | 39.450 | 327 | 158 | 14 | 44 | 344 | 107 | 419 | 2.44e-67 | 221 |
| Msa0739150 | AT3G48440.1 | 52.500 | 80 | 37 | 1 | 84 | 162 | 341 | 420 | 2.65e-20 | 93.2 |
| Msa0739150 | AT5G63260.1 | 36.494 | 348 | 189 | 11 | 19 | 344 | 70 | 407 | 9.94e-67 | 219 |
| Msa0739150 | AT1G04990.4 | 39.117 | 317 | 142 | 7 | 96 | 407 | 16 | 286 | 1.06e-66 | 215 |
| Msa0739150 | AT5G63260.2 | 37.574 | 338 | 166 | 11 | 42 | 344 | 96 | 423 | 3.54e-65 | 216 |
| Msa0739150 | AT2G47850.2 | 34.278 | 353 | 174 | 11 | 19 | 350 | 27 | 342 | 3.49e-61 | 205 |
| Msa0739150 | AT5G16540.4 | 39.576 | 283 | 132 | 10 | 44 | 318 | 18 | 269 | 3.59e-59 | 194 |
| Msa0739150 | AT5G16540.4 | 47.500 | 80 | 40 | 1 | 266 | 343 | 59 | 138 | 8.20e-20 | 89.4 |
| Msa0739150 | AT5G16540.4 | 43.038 | 79 | 44 | 1 | 266 | 343 | 14 | 92 | 9.73e-15 | 74.3 |
| Msa0739150 | AT3G12680.1 | 36.232 | 345 | 159 | 12 | 44 | 343 | 171 | 499 | 3.05e-56 | 194 |
| Msa0739150 | AT3G12680.1 | 43.023 | 86 | 38 | 2 | 41 | 115 | 414 | 499 | 3.65e-16 | 80.9 |
| Msa0739150 | AT2G47850.4 | 35.918 | 245 | 137 | 6 | 124 | 350 | 4 | 246 | 1.47e-42 | 153 |
| Msa0739150 | AT2G47850.4 | 49.398 | 83 | 41 | 1 | 79 | 160 | 157 | 239 | 6.74e-22 | 96.7 |
| Msa0739150 | AT2G47850.4 | 41.975 | 81 | 33 | 2 | 44 | 115 | 164 | 239 | 2.18e-15 | 77.4 |
| Msa0739150 | AT1G48195.1 | 46.753 | 77 | 39 | 1 | 268 | 342 | 4 | 80 | 3.55e-20 | 84.7 |
| Msa0739150 | AT1G48195.1 | 46.753 | 77 | 40 | 1 | 84 | 159 | 4 | 80 | 2.08e-17 | 77.0 |
| Msa0739150 | AT1G48195.1 | 48.000 | 75 | 35 | 1 | 44 | 114 | 6 | 80 | 1.36e-16 | 74.7 |
| Msa0739150 | AT1G29600.2 | 44.578 | 83 | 36 | 4 | 41 | 122 | 125 | 198 | 6.25e-15 | 75.9 |
| Msa0739150 | AT1G29600.1 | 44.578 | 83 | 36 | 4 | 41 | 122 | 119 | 192 | 7.22e-15 | 75.5 |
Find 132 sgRNAs with CRISPR-Local
Find 274 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCAAACTTTGCAACATTT+TGG | 0.120020 | 5_1:-57268511 | None:intergenic |
| GTTTGTGCTATCCTTTCTTT+AGG | 0.127413 | 5_1:-57272069 | None:intergenic |
| TTCATCTCTTGGGGTCAATT+TGG | 0.215644 | 5_1:+57272942 | Msa0739150:three_prime_UTR |
| GCAGCACCTCGCCTGTCTTT+TGG | 0.216284 | 5_1:-57270979 | None:intergenic |
| CCGGCGGGAGAGACACTTTC+TGG | 0.243331 | 5_1:+57271937 | Msa0739150:CDS |
| AGATTTCAGGTTACTCAATA+TGG | 0.278926 | 5_1:+57269826 | Msa0739150:intron |
| TGGACAGTTGAAAGCCTTCT+TGG | 0.292560 | 5_1:-57272558 | None:intergenic |
| TCTGGTTGCTCAGGTCTATC+TGG | 0.304316 | 5_1:-57271985 | None:intergenic |
| AGACCCGGTTCTCATGTAAT+AGG | 0.308674 | 5_1:-57271170 | None:intergenic |
| AGAACCGGGTCTTGCAAGTT+TGG | 0.313892 | 5_1:+57271181 | Msa0739150:CDS |
| AGCACCGGAACATGCAAATA+TGG | 0.322651 | 5_1:+57272024 | Msa0739150:CDS |
| TTTGTGCTATCCTTTCTTTA+GGG | 0.324288 | 5_1:-57272068 | None:intergenic |
| TGCTCTTATTACAGAATCTA+TGG | 0.326952 | 5_1:+57272420 | Msa0739150:CDS |
| AACTCACCTAGATGTTAAAA+AGG | 0.326963 | 5_1:-57268682 | None:intergenic |
| TTCGTATTGCAGAAGCTATT+CGG | 0.340006 | 5_1:+57269469 | Msa0739150:intron |
| ATCTATGGAGTGTGCAAGTT+TGG | 0.347122 | 5_1:+57272435 | Msa0739150:CDS |
| CCGAGAATGTCATATTTATC+TGG | 0.351902 | 5_1:+57271340 | Msa0739150:CDS |
| ACCTTCGTCCGAGTCTTTAC+AGG | 0.352984 | 5_1:+57272695 | Msa0739150:CDS |
| TATAATAATAATATTCCAAT+TGG | 0.364535 | 5_1:-57268544 | None:intergenic |
| CCAGATAAATATGACATTCT+CGG | 0.368337 | 5_1:-57271340 | None:intergenic |
| CCACAACAGGCAGCTTCCTT+TGG | 0.370576 | 5_1:+57271226 | Msa0739150:CDS |
| TCCACAACTGTTACTTCATC+AGG | 0.377937 | 5_1:+57271280 | Msa0739150:CDS |
| GAGGGAGGGGACGCAGCCAC+TGG | 0.382623 | 5_1:-57271259 | None:intergenic |
| GCATTATGCCTGCGCTGAGC+TGG | 0.382644 | 5_1:+57271410 | Msa0739150:CDS |
| CTATCCTTTCTTTAGGGTGG+TGG | 0.386879 | 5_1:-57272062 | None:intergenic |
| ATAAAACCAGTAGGCATTGC+AGG | 0.387637 | 5_1:-57271883 | None:intergenic |
| AAGACAGGAACATGTAAGTA+TGG | 0.393613 | 5_1:+57270934 | Msa0739150:CDS |
| CCCGTTGTCTTCAATACTTT+AGG | 0.398288 | 5_1:+57271003 | Msa0739150:CDS |
| CTGCAGAATTGCAGATCAAA+AGG | 0.410499 | 5_1:-57272803 | None:intergenic |
| CTCAAATAATATACGCAGTC+AGG | 0.416206 | 5_1:-57269567 | None:intergenic |
| CTGACTGCGTATATTATTTG+AGG | 0.418766 | 5_1:+57269568 | Msa0739150:CDS |
| GTTGTTGTTAATGTTATTGT+CGG | 0.419591 | 5_1:+57268471 | None:intergenic |
| AATGGACTTACGGGTCTCAT+AGG | 0.426978 | 5_1:-57272117 | None:intergenic |
| AAAGCCTTCTTGGATTAGTA+AGG | 0.427107 | 5_1:-57272548 | None:intergenic |
| TATTTACAGTCTGGTTGCTC+AGG | 0.430194 | 5_1:-57271994 | None:intergenic |
| GCCTCAATCAATGCCTTATC+CGG | 0.436673 | 5_1:+57269530 | Msa0739150:CDS |
| TGTCCCTATTACATGAGAAC+CGG | 0.442116 | 5_1:+57271166 | Msa0739150:CDS |
| CTCATAAAGTATTTACAGTC+TGG | 0.442202 | 5_1:-57272003 | None:intergenic |
| AAGAACTTCCTGAGAGAGTT+GGG | 0.442954 | 5_1:+57269851 | Msa0739150:CDS |
| TCAGGTTGCCCAACTCTCTC+AGG | 0.445004 | 5_1:-57269859 | None:intergenic |
| TTCTGAGAGATAGCCACAAC+TGG | 0.446204 | 5_1:-57272480 | None:intergenic |
| TTTAGGTCTTCCCATGCGTC+AGG | 0.446654 | 5_1:+57271020 | Msa0739150:CDS |
| AGCTTGTTTAGATGAATCTT+CGG | 0.446950 | 5_1:-57272649 | None:intergenic |
| AATAATCATACCTCACAATC+AGG | 0.447848 | 5_1:-57269877 | None:intergenic |
| ATTACAGGTGAAATGTTAGC+AGG | 0.457153 | 5_1:-57269633 | None:intergenic |
| GGCATAATGCCTTGTGAAGA+AGG | 0.459870 | 5_1:-57271397 | None:intergenic |
| CAACAGGCAGCTTCCTTTGG+AGG | 0.460678 | 5_1:+57271229 | Msa0739150:CDS |
| GCAGGAAACCCACCAGCATA+TGG | 0.464637 | 5_1:-57271307 | None:intergenic |
| AGATCCATATTTGCATGTTC+CGG | 0.472187 | 5_1:-57272028 | None:intergenic |
| CCATCTGGTGATAACATTGA+AGG | 0.474193 | 5_1:+57268850 | Msa0739150:CDS |
| TGCGTATATTATTTGAGGAC+TGG | 0.478797 | 5_1:+57269573 | Msa0739150:CDS |
| GACCCGGTTCTCATGTAATA+GGG | 0.478888 | 5_1:-57271169 | None:intergenic |
| TCACCAGGTCGATCCGGATA+AGG | 0.480066 | 5_1:-57269543 | None:intergenic |
| GGACTGGAATGTGTGGTTAC+GGG | 0.482004 | 5_1:+57269589 | Msa0739150:CDS |
| ATTGACCCCAAGAGATGAAA+GGG | 0.482468 | 5_1:-57272938 | None:intergenic |
| CAAGTTTCATCATCCACAAC+AGG | 0.488215 | 5_1:+57271213 | Msa0739150:CDS |
| TCAGGTTCACCAGGTCGATC+CGG | 0.491203 | 5_1:-57269549 | None:intergenic |
| AATGTCATATTTATCTGGAC+AGG | 0.494113 | 5_1:+57271345 | Msa0739150:CDS |
| TGCAGAATTGCAGATCAAAA+GGG | 0.495104 | 5_1:-57272802 | None:intergenic |
| ATTAACCCTGCAATGCCTAC+TGG | 0.496129 | 5_1:+57271877 | Msa0739150:CDS |
| AATGCTGGTTCTAATCCATC+TGG | 0.496458 | 5_1:+57268835 | Msa0739150:CDS |
| GCAATTCTGCAGGGTTGGAT+AGG | 0.500276 | 5_1:+57272814 | Msa0739150:three_prime_UTR |
| CCTAAAGTATTGAAGACAAC+GGG | 0.502456 | 5_1:-57271003 | None:intergenic |
| CCAAAGGAAGCTGCCTGTTG+TGG | 0.502820 | 5_1:-57271226 | None:intergenic |
| TTGTGACAATCATGAGCTTG+TGG | 0.505135 | 5_1:+57272851 | Msa0739150:three_prime_UTR |
| ATGGAGATGTCTCGGTTGGT+TGG | 0.505736 | 5_1:-57272578 | None:intergenic |
| GATCTGCAATTCTGCAGGGT+TGG | 0.514799 | 5_1:+57272809 | Msa0739150:three_prime_UTR |
| GTGCTATCCTTTCTTTAGGG+TGG | 0.514914 | 5_1:-57272065 | None:intergenic |
| AATATCATCATCCAAAAGAC+AGG | 0.517404 | 5_1:+57270968 | Msa0739150:CDS |
| AGGAGGCACATAAGATTGAA+TGG | 0.519059 | 5_1:-57271368 | None:intergenic |
| GAAGAACTTCCTGAGAGAGT+TGG | 0.521193 | 5_1:+57269850 | Msa0739150:CDS |
| AGGACTGGAATGTGTGGTTA+CGG | 0.521390 | 5_1:+57269588 | Msa0739150:CDS |
| CCTTCAATGTTATCACCAGA+TGG | 0.522380 | 5_1:-57268850 | None:intergenic |
| TGTGACAATCATGAGCTTGT+GGG | 0.528817 | 5_1:+57272852 | Msa0739150:three_prime_UTR |
| AGTAACAGTTGTGGAGGGAG+GGG | 0.529224 | 5_1:-57271272 | None:intergenic |
| TTCGATGGAGATGTCTCGGT+TGG | 0.530171 | 5_1:-57272582 | None:intergenic |
| TTGTCAGTTGATTGTTTCGA+TGG | 0.531763 | 5_1:-57272597 | None:intergenic |
| ATAATAATATTCCAATTGGA+TGG | 0.532368 | 5_1:-57268540 | None:intergenic |
| TTGTTGTTAATGTTATTGTC+GGG | 0.538910 | 5_1:+57268472 | None:intergenic |
| TGTCTACGACTACATGAATC+CGG | 0.541765 | 5_1:+57271918 | Msa0739150:CDS |
| GGGTTGGATAGGTTGTTCAA+TGG | 0.543109 | 5_1:+57272825 | Msa0739150:three_prime_UTR |
| TATACGCAGTCAGGTTCACC+AGG | 0.548463 | 5_1:-57269558 | None:intergenic |
| TGTAAATACTTTATGAGCAC+CGG | 0.550440 | 5_1:+57272009 | Msa0739150:CDS |
| AACTCCAAACTTGCAAGACC+CGG | 0.551983 | 5_1:-57271185 | None:intergenic |
| AGAGACACTTTCTGGTGGAC+AGG | 0.555997 | 5_1:+57271945 | Msa0739150:CDS |
| AGTTCCACCACCCTAAAGAA+AGG | 0.558473 | 5_1:+57272058 | Msa0739150:CDS |
| GAAGTAACAGTTGTGGAGGG+AGG | 0.561560 | 5_1:-57271274 | None:intergenic |
| AAGTAACAGTTGTGGAGGGA+GGG | 0.565711 | 5_1:-57271273 | None:intergenic |
| TTGTTTCGATGGAGATGTCT+CGG | 0.567749 | 5_1:-57272586 | None:intergenic |
| CAAATTTGATCATCCAGTTG+TGG | 0.569323 | 5_1:+57272467 | Msa0739150:CDS |
| GGATGTACAAACCTGACGCA+TGG | 0.570494 | 5_1:-57271031 | None:intergenic |
| TCCGGATAAGGCATTGATTG+AGG | 0.571672 | 5_1:-57269531 | None:intergenic |
| AATTGACCCCAAGAGATGAA+AGG | 0.573938 | 5_1:-57272939 | None:intergenic |
| TAGTTGCTCCAGCTCAGCGC+AGG | 0.575573 | 5_1:-57271418 | None:intergenic |
| CTCTCCTTACTAATCCAAGA+AGG | 0.580301 | 5_1:+57272544 | Msa0739150:CDS |
| GCTGAGCTGGAGCAACTACA+TGG | 0.582157 | 5_1:+57271423 | Msa0739150:CDS |
| GGATGATCAAATTTGCATGT+TGG | 0.583840 | 5_1:-57272459 | None:intergenic |
| CCAGAAAGTGTCTCTCCCGC+CGG | 0.585264 | 5_1:-57271937 | None:intergenic |
| GATGTACAAACCTGACGCAT+GGG | 0.586804 | 5_1:-57271030 | None:intergenic |
| TCCTGTAAAGACTCGGACGA+AGG | 0.587786 | 5_1:-57272696 | None:intergenic |
| ACATTATCAATTAATCCACT+TGG | 0.589067 | 5_1:+57272090 | Msa0739150:CDS |
| GTGACAATCATGAGCTTGTG+GGG | 0.594243 | 5_1:+57272853 | Msa0739150:three_prime_UTR |
| GTCCCTATTACATGAGAACC+GGG | 0.595143 | 5_1:+57271167 | Msa0739150:CDS |
| ACCTGATGAAGTAACAGTTG+TGG | 0.598830 | 5_1:-57271281 | None:intergenic |
| ATGCCTTATCCGGATCGACC+TGG | 0.607838 | 5_1:+57269540 | Msa0739150:CDS |
| TGATGAAGTAACAGTTGTGG+AGG | 0.607944 | 5_1:-57271278 | None:intergenic |
| CTTTGGAGGAGCTTATCCAG+TGG | 0.609878 | 5_1:+57271243 | Msa0739150:CDS |
| GCATCGAATACTGATAGAGT+AGG | 0.610445 | 5_1:-57272519 | None:intergenic |
| GTGGCTATCTCTCAGAACTA+CGG | 0.612160 | 5_1:+57272486 | Msa0739150:CDS |
| TACGACTACATGAATCCGGC+GGG | 0.613456 | 5_1:+57271922 | Msa0739150:CDS |
| CACTGGATAAGCTCCTCCAA+AGG | 0.616300 | 5_1:-57271242 | None:intergenic |
| TTAGATCCAATAAAACCAGT+AGG | 0.616664 | 5_1:-57271892 | None:intergenic |
| AGTTTATTCCTGTAAAGACT+CGG | 0.621015 | 5_1:-57272703 | None:intergenic |
| GCAGAATTGCAGATCAAAAG+GGG | 0.625119 | 5_1:-57272801 | None:intergenic |
| TTACAGGTGAAATGTTAGCA+GGG | 0.627493 | 5_1:-57269632 | None:intergenic |
| GCGGGAGAGACACTTTCTGG+TGG | 0.637718 | 5_1:+57271940 | Msa0739150:CDS |
| TTGTTTAGATGAATCTTCGG+TGG | 0.638315 | 5_1:-57272646 | None:intergenic |
| TAAAACCAGTAGGCATTGCA+GGG | 0.641286 | 5_1:-57271882 | None:intergenic |
| AGTTGGGCAACCTGATTGTG+AGG | 0.647405 | 5_1:+57269867 | Msa0739150:CDS |
| ACCTAAAGTATTGAAGACAA+CGG | 0.650733 | 5_1:-57271004 | None:intergenic |
| ATGCTGGTGGGTTTCCTGCG+TGG | 0.658783 | 5_1:+57271311 | Msa0739150:CDS |
| TATTTGAGGACTGGAATGTG+TGG | 0.661824 | 5_1:+57269582 | Msa0739150:CDS |
| AATACTGATAGAGTAGGCGA+AGG | 0.666119 | 5_1:-57272513 | None:intergenic |
| CTACGACTACATGAATCCGG+CGG | 0.676232 | 5_1:+57271921 | Msa0739150:CDS |
| TGTTAGCAGGGTGATTATAG+CGG | 0.683660 | 5_1:-57269620 | None:intergenic |
| CAGAATTGCAGATCAAAAGG+GGG | 0.684919 | 5_1:-57272800 | None:intergenic |
| GATGAAGTAACAGTTGTGGA+GGG | 0.690790 | 5_1:-57271277 | None:intergenic |
| TTGACCCCAAGAGATGAAAG+GGG | 0.697209 | 5_1:-57272937 | None:intergenic |
| CATCATCCAAAAGACAGGCG+AGG | 0.697302 | 5_1:+57270973 | Msa0739150:CDS |
| TGACAATCATGAGCTTGTGG+GGG | 0.723888 | 5_1:+57272854 | Msa0739150:three_prime_UTR |
| ATTCTCGGCATTGACCACGC+AGG | 0.726935 | 5_1:-57271325 | None:intergenic |
| GGTCTCATAGGAAGACCAAG+TGG | 0.733950 | 5_1:-57272105 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAATAATAATATTCCAAT+TGG | - | chr5_1:57268547-57268566 | None:intergenic | 10.0% |
| !!! | TTATCTATTTGTTATATAAA+TGG | - | chr5_1:57270750-57270769 | None:intergenic | 10.0% |
| !!! | ATTTTGTTTAAATAACAAAA+TGG | - | chr5_1:57272213-57272232 | None:intergenic | 10.0% |
| !! | ACAAAAAACTAATAAATGTT+TGG | - | chr5_1:57270396-57270415 | None:intergenic | 15.0% |
| !!! | TTATTAGTTTTTTGTTTTGA+TGG | + | chr5_1:57270401-57270420 | Msa0739150:intron | 15.0% |
| !!! | ATTTTTCACAATTAAAAAGT+TGG | - | chr5_1:57272172-57272191 | None:intergenic | 15.0% |
| !!! | TTGAAGTTTTATTTTTCTTT+TGG | + | chr5_1:57272728-57272747 | Msa0739150:three_prime_UTR | 15.0% |
| !! | ATAATAATATTCCAATTGGA+TGG | - | chr5_1:57268543-57268562 | None:intergenic | 20.0% |
| !!! | TTTTTACCTTTTTAACATCT+AGG | + | chr5_1:57268676-57268695 | Msa0739150:five_prime_UTR | 20.0% |
| !! | ATTTCATCTTAAAAGCTTAA+AGG | + | chr5_1:57268725-57268744 | Msa0739150:intron | 20.0% |
| !! | TTTCATCTTAAAAGCTTAAA+GGG | + | chr5_1:57268726-57268745 | Msa0739150:intron | 20.0% |
| !! | CAGAAAGAAAAATCATAAAA+AGG | - | chr5_1:57269678-57269697 | None:intergenic | 20.0% |
| !!! | CTTTTTATGATTTTTCTTTC+TGG | + | chr5_1:57269676-57269695 | Msa0739150:intron | 20.0% |
| !!! | ATATTGTTTAGTTTTCTCAT+TGG | + | chr5_1:57269760-57269779 | Msa0739150:intron | 20.0% |
| !!! | GGTTTTATTATTCGTAATTT+AGG | + | chr5_1:57269781-57269800 | Msa0739150:intron | 20.0% |
| !! | AAAACTAATAAATGTTTGGA+AGG | - | chr5_1:57270392-57270411 | None:intergenic | 20.0% |
| !! | ATCTAGTAAATAAATTCTAC+AGG | - | chr5_1:57270441-57270460 | None:intergenic | 20.0% |
| !! | TACTAGTATTAAATTCTGTT+TGG | - | chr5_1:57270873-57270892 | None:intergenic | 20.0% |
| !!! | ATATACTGATTAACATAGTA+TGG | + | chr5_1:57271512-57271531 | Msa0739150:intron | 20.0% |
| !!! | CTATTTTATTTGTCGAAAAA+GGG | + | chr5_1:57271850-57271869 | Msa0739150:intron | 20.0% |
| !! | AATTAAAAAGTTGGAACAAA+CGG | - | chr5_1:57272163-57272182 | None:intergenic | 20.0% |
| !!! | ATAGTTTAGAGATTACTTTT+TGG | - | chr5_1:57272255-57272274 | None:intergenic | 20.0% |
| !! | AGTATCATCACAAAATATTA+GGG | - | chr5_1:57272330-57272349 | None:intergenic | 20.0% |
| !! | AAGTATCATCACAAAATATT+AGG | - | chr5_1:57272331-57272350 | None:intergenic | 20.0% |
| !!! | GACCTTTTTTTTTCTTTTTT+CGG | + | chr5_1:57272750-57272769 | Msa0739150:three_prime_UTR | 20.0% |
| !! | TTGAAAACTTGTCTATTTTC+TGG | - | chr5_1:57268814-57268833 | None:intergenic | 25.0% |
| !!! | TGATGATGTGTTTCTATTTT+TGG | + | chr5_1:57269018-57269037 | Msa0739150:intron | 25.0% |
| ! | TTTGCTTTATGATGCAATAA+AGG | + | chr5_1:57269275-57269294 | Msa0739150:intron | 25.0% |
| ! | TTGCTTTATGATGCAATAAA+GGG | + | chr5_1:57269276-57269295 | Msa0739150:intron | 25.0% |
| ! | TTATTACTGCTTGAATTTGT+TGG | + | chr5_1:57269400-57269419 | Msa0739150:intron | 25.0% |
| !! | TTTTATGAACATGTAGTTTG+CGG | + | chr5_1:57269730-57269749 | Msa0739150:intron | 25.0% |
| ! | CTCATACTTTATTAGATTTC+AGG | + | chr5_1:57269813-57269832 | Msa0739150:intron | 25.0% |
| ! | AATGACAACAAATACATTTG+TGG | - | chr5_1:57269911-57269930 | None:intergenic | 25.0% |
| ! | TTAAGAGTGAATTCAAGAAT+AGG | + | chr5_1:57269996-57270015 | Msa0739150:intron | 25.0% |
| !! | GAATTTGTTCAAGGAAAAAA+AGG | - | chr5_1:57270022-57270041 | None:intergenic | 25.0% |
| !! | GTAAAAAGTGAATTTGTTCA+AGG | - | chr5_1:57270031-57270050 | None:intergenic | 25.0% |
| !! | ACTTAATTTTTGTCCTTTTG+TGG | + | chr5_1:57270101-57270120 | Msa0739150:intron | 25.0% |
| ! | AATTAGCAAGTATTTCAAAC+AGG | - | chr5_1:57270166-57270185 | None:intergenic | 25.0% |
| ! | TAGAACACCAATAAATGAAA+AGG | + | chr5_1:57270278-57270297 | Msa0739150:intron | 25.0% |
| ! | AGAACACCAATAAATGAAAA+GGG | + | chr5_1:57270279-57270298 | Msa0739150:intron | 25.0% |
| !! | TTTCTTCCCTTTTCATTTAT+TGG | - | chr5_1:57270288-57270307 | None:intergenic | 25.0% |
| ! | ACAACTTAATTAAGCGTTTA+TGG | + | chr5_1:57270689-57270708 | Msa0739150:intron | 25.0% |
| ! | AATTAGCTGAAAACATCTTT+AGG | + | chr5_1:57270817-57270836 | Msa0739150:intron | 25.0% |
| !! | AATAAAGCACTTGATTCAAA+GGG | - | chr5_1:57271055-57271074 | None:intergenic | 25.0% |
| !! | AAATAAAGCACTTGATTCAA+AGG | - | chr5_1:57271056-57271075 | None:intergenic | 25.0% |
| ! | GAATGTCGTGTTTATATTTA+CGG | + | chr5_1:57271462-57271481 | Msa0739150:intron | 25.0% |
| ! | AATATTTCCTAAACAAGACA+AGG | - | chr5_1:57271717-57271736 | None:intergenic | 25.0% |
| !!! | GCTATTTTATTTGTCGAAAA+AGG | + | chr5_1:57271849-57271868 | Msa0739150:intron | 25.0% |
| ! | ACATTATCAATTAATCCACT+TGG | + | chr5_1:57272090-57272109 | Msa0739150:CDS | 25.0% |
| ! | CTCCGAAAAAAGAAAAAAAA+AGG | - | chr5_1:57272755-57272774 | None:intergenic | 25.0% |
| !! | GAATTTCACTCAGTATTTTT+AGG | - | chr5_1:57272976-57272995 | None:intergenic | 25.0% |
| AACTCACCTAGATGTTAAAA+AGG | - | chr5_1:57268685-57268704 | None:intergenic | 30.0% | |
| ! | TGTTCTGATCATCATTGTTT+TGG | + | chr5_1:57268950-57268969 | Msa0739150:intron | 30.0% |
| !! | TTAACTTGTGTGAGTGAAAA+AGG | + | chr5_1:57269148-57269167 | Msa0739150:intron | 30.0% |
| TGATTCTATGCAAGTAAACA+TGG | - | chr5_1:57269209-57269228 | None:intergenic | 30.0% | |
| TTATTATACTTGATCGCACA+TGG | + | chr5_1:57269233-57269252 | Msa0739150:intron | 30.0% | |
| CTGATCCAGTTTAATTGTAT+TGG | + | chr5_1:57269355-57269374 | Msa0739150:intron | 30.0% | |
| ACAGTCCAATACAATTAAAC+TGG | - | chr5_1:57269363-57269382 | None:intergenic | 30.0% | |
| AAAAGAAAGAGCTTCATTAC+AGG | - | chr5_1:57269651-57269670 | None:intergenic | 30.0% | |
| !! | AGATTTCAGGTTACTCAATA+TGG | + | chr5_1:57269826-57269845 | Msa0739150:intron | 30.0% |
| AATAATCATACCTCACAATC+AGG | - | chr5_1:57269880-57269899 | None:intergenic | 30.0% | |
| ! | TTTCATTCCTGCATTTTGAA+CGG | + | chr5_1:57269931-57269950 | Msa0739150:intron | 30.0% |
| GGACAAAAATTAAGTGCAAA+AGG | - | chr5_1:57270096-57270115 | None:intergenic | 30.0% | |
| CTATTATTAAAGGGGTTGAA+TGG | - | chr5_1:57270137-57270156 | None:intergenic | 30.0% | |
| CATTCAACCCCTTTAATAAT+AGG | + | chr5_1:57270135-57270154 | Msa0739150:intron | 30.0% | |
| !! | TTCTCTGAAATATTTAGCCT+AGG | + | chr5_1:57270241-57270260 | Msa0739150:intron | 30.0% |
| !! | TCTCTGAAATATTTAGCCTA+GGG | + | chr5_1:57270242-57270261 | Msa0739150:intron | 30.0% |
| ! | CAAAAGATGATTTTCCACAT+TGG | - | chr5_1:57270366-57270385 | None:intergenic | 30.0% |
| AGATCTCTCTATGACAATAA+TGG | + | chr5_1:57270457-57270476 | Msa0739150:intron | 30.0% | |
| CTTCTTCTTAAATTACGCTA+TGG | - | chr5_1:57270504-57270523 | None:intergenic | 30.0% | |
| GTACTAGAAATATCAAGTTC+AGG | + | chr5_1:57270562-57270581 | Msa0739150:intron | 30.0% | |
| ! | CGCTTAATTAAGTTGTCTAT+AGG | - | chr5_1:57270685-57270704 | None:intergenic | 30.0% |
| ! | TTGCAGTATTTTCTTAAGAC+AGG | + | chr5_1:57270919-57270938 | Msa0739150:intron | 30.0% |
| AATATCATCATCCAAAAGAC+AGG | + | chr5_1:57270968-57270987 | Msa0739150:CDS | 30.0% | |
| !! | ACCTAAAGTATTGAAGACAA+CGG | - | chr5_1:57271007-57271026 | None:intergenic | 30.0% |
| CATCAAAAGAGTAAACATTG+TGG | - | chr5_1:57271082-57271101 | None:intergenic | 30.0% | |
| ! | CACAATGTTTACTCTTTTGA+TGG | + | chr5_1:57271080-57271099 | Msa0739150:intron | 30.0% |
| CCAGATAAATATGACATTCT+CGG | - | chr5_1:57271343-57271362 | None:intergenic | 30.0% | |
| AATGTCATATTTATCTGGAC+AGG | + | chr5_1:57271345-57271364 | Msa0739150:CDS | 30.0% | |
| TGGTTTAAACGAATACATGA+AGG | + | chr5_1:57271532-57271551 | Msa0739150:intron | 30.0% | |
| GTGACATCTAGTAGTAAAAA+TGG | - | chr5_1:57271574-57271593 | None:intergenic | 30.0% | |
| ! | CAAATGAAGTGATTTGTGTA+TGG | + | chr5_1:57271609-57271628 | Msa0739150:intron | 30.0% |
| !! | CATTGATTTCCAATCACATT+CGG | + | chr5_1:57271655-57271674 | Msa0739150:intron | 30.0% |
| TTAGATCCAATAAAACCAGT+AGG | - | chr5_1:57271895-57271914 | None:intergenic | 30.0% | |
| ! | CTCATAAAGTATTTACAGTC+TGG | - | chr5_1:57272006-57272025 | None:intergenic | 30.0% |
| TGTAAATACTTTATGAGCAC+CGG | + | chr5_1:57272009-57272028 | Msa0739150:CDS | 30.0% | |
| TTTGTGCTATCCTTTCTTTA+GGG | - | chr5_1:57272071-57272090 | None:intergenic | 30.0% | |
| ! | TTAAGCAGAAAATGGACTTA+CGG | - | chr5_1:57272130-57272149 | None:intergenic | 30.0% |
| ! | CATTTTCTGCTTAATGCTTA+GGG | + | chr5_1:57272136-57272155 | Msa0739150:intron | 30.0% |
| ! | TGATTTTCTGATTCCTATGT+TGG | + | chr5_1:57272375-57272394 | Msa0739150:intron | 30.0% |
| TGCTCTTATTACAGAATCTA+TGG | + | chr5_1:57272420-57272439 | Msa0739150:CDS | 30.0% | |
| ! | AGCTTGTTTAGATGAATCTT+CGG | - | chr5_1:57272652-57272671 | None:intergenic | 30.0% |
| AGTTTATTCCTGTAAAGACT+CGG | - | chr5_1:57272706-57272725 | None:intergenic | 30.0% | |
| ! | CTGCAAACTTTGCAACATTT+TGG | - | chr5_1:57268514-57268533 | None:intergenic | 35.0% |
| ! | TGCAGAATTTTCCATCCAAT+TGG | + | chr5_1:57268529-57268548 | Msa0739150:five_prime_UTR | 35.0% |
| TAAAAGCTTAAAGGGTCATC+AGG | + | chr5_1:57268734-57268753 | Msa0739150:intron | 35.0% | |
| AAAAGCTTAAAGGGTCATCA+GGG | + | chr5_1:57268735-57268754 | Msa0739150:intron | 35.0% | |
| !! | AGACAAGTTTTCAAGAATGC+TGG | + | chr5_1:57268820-57268839 | Msa0739150:CDS | 35.0% |
| !!! | CTGATCATCATTGTTTTGGT+TGG | + | chr5_1:57268954-57268973 | Msa0739150:intron | 35.0% |
| CAATGTTGTTGTATTGTGTG+AGG | + | chr5_1:57269098-57269117 | Msa0739150:intron | 35.0% | |
| TTCTGCAATACGAATCACAA+AGG | - | chr5_1:57269463-57269482 | None:intergenic | 35.0% | |
| TTCGTATTGCAGAAGCTATT+CGG | + | chr5_1:57269469-57269488 | Msa0739150:intron | 35.0% | |
| CTCAAATAATATACGCAGTC+AGG | - | chr5_1:57269570-57269589 | None:intergenic | 35.0% | |
| CTGACTGCGTATATTATTTG+AGG | + | chr5_1:57269568-57269587 | Msa0739150:CDS | 35.0% | |
| TGCGTATATTATTTGAGGAC+TGG | + | chr5_1:57269573-57269592 | Msa0739150:CDS | 35.0% | |
| TTACAGGTGAAATGTTAGCA+GGG | - | chr5_1:57269635-57269654 | None:intergenic | 35.0% | |
| ATTACAGGTGAAATGTTAGC+AGG | - | chr5_1:57269636-57269655 | None:intergenic | 35.0% | |
| TGGAAATAAGAGACCACAAA+AGG | - | chr5_1:57270117-57270136 | None:intergenic | 35.0% | |
| AGGCGAAGCCTATTATTAAA+GGG | - | chr5_1:57270146-57270165 | None:intergenic | 35.0% | |
| CATGAGCACATAACATATGT+AGG | + | chr5_1:57270190-57270209 | Msa0739150:intron | 35.0% | |
| AAAAGGGAAGAAACTGATGT+AGG | + | chr5_1:57270295-57270314 | Msa0739150:intron | 35.0% | |
| AATAAGTTATGCTGCCAATG+TGG | + | chr5_1:57270349-57270368 | Msa0739150:intron | 35.0% | |
| ATTCTACAGGACACACTATA+AGG | - | chr5_1:57270428-57270447 | None:intergenic | 35.0% | |
| TCCAATGCAATGAAAGTTGT+TGG | + | chr5_1:57270649-57270668 | Msa0739150:intron | 35.0% | |
| ACCAACAACTTTCATTGCAT+TGG | - | chr5_1:57270653-57270672 | None:intergenic | 35.0% | |
| ! | ACTGTTTTCAAAAGCTATCC+TGG | + | chr5_1:57270782-57270801 | Msa0739150:intron | 35.0% |
| TTTGGAAGAGCTTATGGAAA+CGG | - | chr5_1:57270855-57270874 | None:intergenic | 35.0% | |
| ATTCTGTTTGGAAGAGCTTA+TGG | - | chr5_1:57270861-57270880 | None:intergenic | 35.0% | |
| AAGACAGGAACATGTAAGTA+TGG | + | chr5_1:57270934-57270953 | Msa0739150:CDS | 35.0% | |
| !! | CCTAAAGTATTGAAGACAAC+GGG | - | chr5_1:57271006-57271025 | None:intergenic | 35.0% |
| AATCCACGATTGTTTCGTTT+AGG | + | chr5_1:57271132-57271151 | Msa0739150:intron | 35.0% | |
| CCGAGAATGTCATATTTATC+TGG | + | chr5_1:57271340-57271359 | Msa0739150:CDS | 35.0% | |
| ACTAGATGTCACACATTTCA+TGG | + | chr5_1:57271582-57271601 | Msa0739150:intron | 35.0% | |
| !! | GGAAATATTCCTAGCCTTTT+AGG | + | chr5_1:57271728-57271747 | Msa0739150:intron | 35.0% |
| ACATAGCCAAAGATCCTAAA+AGG | - | chr5_1:57271745-57271764 | None:intergenic | 35.0% | |
| TCGTAACTACATGCATTCAA+TGG | + | chr5_1:57271781-57271800 | Msa0739150:intron | 35.0% | |
| AGATCCATATTTGCATGTTC+CGG | - | chr5_1:57272031-57272050 | None:intergenic | 35.0% | |
| GTTTGTGCTATCCTTTCTTT+AGG | - | chr5_1:57272072-57272091 | None:intergenic | 35.0% | |
| ! | TAAGCAGAAAATGGACTTAC+GGG | - | chr5_1:57272129-57272148 | None:intergenic | 35.0% |
| CCTAAGCATTAAGCAGAAAA+TGG | - | chr5_1:57272138-57272157 | None:intergenic | 35.0% | |
| ! | CCATTTTCTGCTTAATGCTT+AGG | + | chr5_1:57272135-57272154 | Msa0739150:intron | 35.0% |
| GGATGATCAAATTTGCATGT+TGG | - | chr5_1:57272462-57272481 | None:intergenic | 35.0% | |
| CAAATTTGATCATCCAGTTG+TGG | + | chr5_1:57272467-57272486 | Msa0739150:CDS | 35.0% | |
| !! | AAAGCCTTCTTGGATTAGTA+AGG | - | chr5_1:57272551-57272570 | None:intergenic | 35.0% |
| TTGTCAGTTGATTGTTTCGA+TGG | - | chr5_1:57272600-57272619 | None:intergenic | 35.0% | |
| TTGTTTAGATGAATCTTCGG+TGG | - | chr5_1:57272649-57272668 | None:intergenic | 35.0% | |
| TGCAGAATTGCAGATCAAAA+GGG | - | chr5_1:57272805-57272824 | None:intergenic | 35.0% | |
| ! | TTTTGATCTGCAATTCTGCA+GGG | + | chr5_1:57272805-57272824 | Msa0739150:three_prime_UTR | 35.0% |
| !!! | GATAGAGGGCATTTTTTTTG+TGG | + | chr5_1:57272876-57272895 | Msa0739150:three_prime_UTR | 35.0% |
| !! | AATGCTGGTTCTAATCCATC+TGG | + | chr5_1:57268835-57268854 | Msa0739150:CDS | 40.0% |
| CCTTCAATGTTATCACCAGA+TGG | - | chr5_1:57268853-57268872 | None:intergenic | 40.0% | |
| CCATCTGGTGATAACATTGA+AGG | + | chr5_1:57268850-57268869 | Msa0739150:CDS | 40.0% | |
| ATTGTATTGGACTGTGAGTG+TGG | + | chr5_1:57269368-57269387 | Msa0739150:intron | 40.0% | |
| TATTTGAGGACTGGAATGTG+TGG | + | chr5_1:57269582-57269601 | Msa0739150:CDS | 40.0% | |
| TGTTAGCAGGGTGATTATAG+CGG | - | chr5_1:57269623-57269642 | None:intergenic | 40.0% | |
| AAGAACTTCCTGAGAGAGTT+GGG | + | chr5_1:57269851-57269870 | Msa0739150:CDS | 40.0% | |
| GCATAAACCACATCCACATT+CGG | - | chr5_1:57269969-57269988 | None:intergenic | 40.0% | |
| GGCGAAGCCTATTATTAAAG+GGG | - | chr5_1:57270145-57270164 | None:intergenic | 40.0% | |
| CAGGCGAAGCCTATTATTAA+AGG | - | chr5_1:57270147-57270166 | None:intergenic | 40.0% | |
| ACTGAGACTATGCTCATACA+AGG | + | chr5_1:57270214-57270233 | Msa0739150:intron | 40.0% | |
| CTGAGACTATGCTCATACAA+GGG | + | chr5_1:57270215-57270234 | Msa0739150:intron | 40.0% | |
| CTAACAATGAACATGTCCCT+AGG | - | chr5_1:57270261-57270280 | None:intergenic | 40.0% | |
| AAGAAACTGATGTAGGTCGT+AGG | + | chr5_1:57270302-57270321 | Msa0739150:intron | 40.0% | |
| CTAATTTCCATAAGCTCTCC+AGG | - | chr5_1:57270803-57270822 | None:intergenic | 40.0% | |
| CCCGTTGTCTTCAATACTTT+AGG | + | chr5_1:57271003-57271022 | Msa0739150:CDS | 40.0% | |
| CTTCCTAAACGAAACAATCG+TGG | - | chr5_1:57271138-57271157 | None:intergenic | 40.0% | |
| TGTCCCTATTACATGAGAAC+CGG | + | chr5_1:57271166-57271185 | Msa0739150:CDS | 40.0% | |
| CAAGTTTCATCATCCACAAC+AGG | + | chr5_1:57271213-57271232 | Msa0739150:CDS | 40.0% | |
| GATGAAGTAACAGTTGTGGA+GGG | - | chr5_1:57271280-57271299 | None:intergenic | 40.0% | |
| TGATGAAGTAACAGTTGTGG+AGG | - | chr5_1:57271281-57271300 | None:intergenic | 40.0% | |
| ! | TCCACAACTGTTACTTCATC+AGG | + | chr5_1:57271280-57271299 | Msa0739150:CDS | 40.0% |
| ACCTGATGAAGTAACAGTTG+TGG | - | chr5_1:57271284-57271303 | None:intergenic | 40.0% | |
| ! | TCATCAGGTTTTCCATATGC+TGG | + | chr5_1:57271295-57271314 | Msa0739150:CDS | 40.0% |
| ! | AGGAGGCACATAAGATTGAA+TGG | - | chr5_1:57271371-57271390 | None:intergenic | 40.0% |
| TGTGAAGAAGGCAAAAAAGG+AGG | - | chr5_1:57271388-57271407 | None:intergenic | 40.0% | |
| CCTTGTGAAGAAGGCAAAAA+AGG | - | chr5_1:57271391-57271410 | None:intergenic | 40.0% | |
| !!! | CCTTTTTTGCCTTCTTCACA+AGG | + | chr5_1:57271388-57271407 | Msa0739150:CDS | 40.0% |
| TTTCCTAAACAAGACAAGGC+TGG | - | chr5_1:57271713-57271732 | None:intergenic | 40.0% | |
| !!! | TCCTAGCCTTTTAGGATCTT+TGG | + | chr5_1:57271736-57271755 | Msa0739150:intron | 40.0% |
| ! | TAAAACCAGTAGGCATTGCA+GGG | - | chr5_1:57271885-57271904 | None:intergenic | 40.0% |
| ! | ATAAAACCAGTAGGCATTGC+AGG | - | chr5_1:57271886-57271905 | None:intergenic | 40.0% |
| !!! | GCAATGCCTACTGGTTTTAT+TGG | + | chr5_1:57271886-57271905 | Msa0739150:CDS | 40.0% |
| TGTCTACGACTACATGAATC+CGG | + | chr5_1:57271918-57271937 | Msa0739150:CDS | 40.0% | |
| TATTTACAGTCTGGTTGCTC+AGG | - | chr5_1:57271997-57272016 | None:intergenic | 40.0% | |
| ATCTATGGAGTGTGCAAGTT+TGG | + | chr5_1:57272435-57272454 | Msa0739150:CDS | 40.0% | |
| AATACTGATAGAGTAGGCGA+AGG | - | chr5_1:57272516-57272535 | None:intergenic | 40.0% | |
| GCATCGAATACTGATAGAGT+AGG | - | chr5_1:57272522-57272541 | None:intergenic | 40.0% | |
| CTCTCCTTACTAATCCAAGA+AGG | + | chr5_1:57272544-57272563 | Msa0739150:CDS | 40.0% | |
| TTGTTTCGATGGAGATGTCT+CGG | - | chr5_1:57272589-57272608 | None:intergenic | 40.0% | |
| AGATCAAAAGGGGGAATAGA+TGG | - | chr5_1:57272794-57272813 | None:intergenic | 40.0% | |
| CAGAATTGCAGATCAAAAGG+GGG | - | chr5_1:57272803-57272822 | None:intergenic | 40.0% | |
| GCAGAATTGCAGATCAAAAG+GGG | - | chr5_1:57272804-57272823 | None:intergenic | 40.0% | |
| CTGCAGAATTGCAGATCAAA+AGG | - | chr5_1:57272806-57272825 | None:intergenic | 40.0% | |
| ! | CTTTTGATCTGCAATTCTGC+AGG | + | chr5_1:57272804-57272823 | Msa0739150:three_prime_UTR | 40.0% |
| TTGTGACAATCATGAGCTTG+TGG | + | chr5_1:57272851-57272870 | Msa0739150:three_prime_UTR | 40.0% | |
| TGTGACAATCATGAGCTTGT+GGG | + | chr5_1:57272852-57272871 | Msa0739150:three_prime_UTR | 40.0% | |
| ! | TCTTTTCCCCTTTCATCTCT+TGG | + | chr5_1:57272931-57272950 | Msa0739150:three_prime_UTR | 40.0% |
| ! | CTTTTCCCCTTTCATCTCTT+GGG | + | chr5_1:57272932-57272951 | Msa0739150:three_prime_UTR | 40.0% |
| ! | TTTTCCCCTTTCATCTCTTG+GGG | + | chr5_1:57272933-57272952 | Msa0739150:three_prime_UTR | 40.0% |
| ATTGACCCCAAGAGATGAAA+GGG | - | chr5_1:57272941-57272960 | None:intergenic | 40.0% | |
| AATTGACCCCAAGAGATGAA+AGG | - | chr5_1:57272942-57272961 | None:intergenic | 40.0% | |
| TTCATCTCTTGGGGTCAATT+TGG | + | chr5_1:57272942-57272961 | Msa0739150:three_prime_UTR | 40.0% | |
| GCCTCAATCAATGCCTTATC+CGG | + | chr5_1:57269530-57269549 | Msa0739150:CDS | 45.0% | |
| !! | TCCGGATAAGGCATTGATTG+AGG | - | chr5_1:57269534-57269553 | None:intergenic | 45.0% |
| AGGACTGGAATGTGTGGTTA+CGG | + | chr5_1:57269588-57269607 | Msa0739150:CDS | 45.0% | |
| GAAGAACTTCCTGAGAGAGT+TGG | + | chr5_1:57269850-57269869 | Msa0739150:CDS | 45.0% | |
| !! | TGAAGCACCGTTCAAAATGC+AGG | - | chr5_1:57269941-57269960 | None:intergenic | 45.0% |
| GTGCTTCATGAAACCGAATG+TGG | + | chr5_1:57269953-57269972 | Msa0739150:intron | 45.0% | |
| CATGAAACCGAATGTGGATG+TGG | + | chr5_1:57269959-57269978 | Msa0739150:intron | 45.0% | |
| CTGATGTAGGTCGTAGGATA+CGG | + | chr5_1:57270308-57270327 | Msa0739150:intron | 45.0% | |
| AAGCTATCCTGGAGAGCTTA+TGG | + | chr5_1:57270793-57270812 | Msa0739150:intron | 45.0% | |
| GATGTACAAACCTGACGCAT+GGG | - | chr5_1:57271033-57271052 | None:intergenic | 45.0% | |
| GTCCCTATTACATGAGAACC+GGG | + | chr5_1:57271167-57271186 | Msa0739150:CDS | 45.0% | |
| GACCCGGTTCTCATGTAATA+GGG | - | chr5_1:57271172-57271191 | None:intergenic | 45.0% | |
| AGACCCGGTTCTCATGTAAT+AGG | - | chr5_1:57271173-57271192 | None:intergenic | 45.0% | |
| AACTCCAAACTTGCAAGACC+CGG | - | chr5_1:57271188-57271207 | None:intergenic | 45.0% | |
| AAGTAACAGTTGTGGAGGGA+GGG | - | chr5_1:57271276-57271295 | None:intergenic | 45.0% | |
| ! | TCAGGTTTTCCATATGCTGG+TGG | + | chr5_1:57271298-57271317 | Msa0739150:CDS | 45.0% |
| ! | CAGGTTTTCCATATGCTGGT+GGG | + | chr5_1:57271299-57271318 | Msa0739150:CDS | 45.0% |
| GGCATAATGCCTTGTGAAGA+AGG | - | chr5_1:57271400-57271419 | None:intergenic | 45.0% | |
| !! | ATTTGAGCGCCGAATGTGAT+TGG | - | chr5_1:57271667-57271686 | None:intergenic | 45.0% |
| !!! | AGACAAGGCTGGTTCTGTTT+TGG | - | chr5_1:57271702-57271721 | None:intergenic | 45.0% |
| !! | GAACCAGCCTTGTCTTGTTT+AGG | + | chr5_1:57271707-57271726 | Msa0739150:intron | 45.0% |
| GCCAAAGATCCTAAAAGGCT+AGG | - | chr5_1:57271740-57271759 | None:intergenic | 45.0% | |
| ATTAACCCTGCAATGCCTAC+TGG | + | chr5_1:57271877-57271896 | Msa0739150:CDS | 45.0% | |
| ! | AGCACCGGAACATGCAAATA+TGG | + | chr5_1:57272024-57272043 | Msa0739150:CDS | 45.0% |
| AGTTCCACCACCCTAAAGAA+AGG | + | chr5_1:57272058-57272077 | Msa0739150:CDS | 45.0% | |
| !! | CTATCCTTTCTTTAGGGTGG+TGG | - | chr5_1:57272065-57272084 | None:intergenic | 45.0% |
| ! | GTGCTATCCTTTCTTTAGGG+TGG | - | chr5_1:57272068-57272087 | None:intergenic | 45.0% |
| ! | AATGGACTTACGGGTCTCAT+AGG | - | chr5_1:57272120-57272139 | None:intergenic | 45.0% |
| ! | TTCCTATGTTGGTTGTCTGC+AGG | + | chr5_1:57272386-57272405 | Msa0739150:intron | 45.0% |
| ! | TCCTATGTTGGTTGTCTGCA+GGG | + | chr5_1:57272387-57272406 | Msa0739150:intron | 45.0% |
| ! | TTCTGAGAGATAGCCACAAC+TGG | - | chr5_1:57272483-57272502 | None:intergenic | 45.0% |
| GTGGCTATCTCTCAGAACTA+CGG | + | chr5_1:57272486-57272505 | Msa0739150:CDS | 45.0% | |
| TGGACAGTTGAAAGCCTTCT+TGG | - | chr5_1:57272561-57272580 | None:intergenic | 45.0% | |
| GGGTTGGATAGGTTGTTCAA+TGG | + | chr5_1:57272825-57272844 | Msa0739150:three_prime_UTR | 45.0% | |
| GTGACAATCATGAGCTTGTG+GGG | + | chr5_1:57272853-57272872 | Msa0739150:three_prime_UTR | 45.0% | |
| TGACAATCATGAGCTTGTGG+GGG | + | chr5_1:57272854-57272873 | Msa0739150:three_prime_UTR | 45.0% | |
| TTGACCCCAAGAGATGAAAG+GGG | - | chr5_1:57272940-57272959 | None:intergenic | 45.0% | |
| !!! | ATTTATATTTTAATTTTCAT+TGG | + | chr5_1:57268647-57268666 | Msa0739150:five_prime_UTR | 5.0% |
| TATACGCAGTCAGGTTCACC+AGG | - | chr5_1:57269561-57269580 | None:intergenic | 50.0% | |
| GGACTGGAATGTGTGGTTAC+GGG | + | chr5_1:57269589-57269608 | Msa0739150:CDS | 50.0% | |
| AGTTGGGCAACCTGATTGTG+AGG | + | chr5_1:57269867-57269886 | Msa0739150:CDS | 50.0% | |
| AGGTCGTAGGATACGGAATG+AGG | + | chr5_1:57270315-57270334 | Msa0739150:intron | 50.0% | |
| CATCATCCAAAAGACAGGCG+AGG | + | chr5_1:57270973-57270992 | Msa0739150:CDS | 50.0% | |
| TTTAGGTCTTCCCATGCGTC+AGG | + | chr5_1:57271020-57271039 | Msa0739150:CDS | 50.0% | |
| GGATGTACAAACCTGACGCA+TGG | - | chr5_1:57271034-57271053 | None:intergenic | 50.0% | |
| AGAACCGGGTCTTGCAAGTT+TGG | + | chr5_1:57271181-57271200 | Msa0739150:CDS | 50.0% | |
| CACTGGATAAGCTCCTCCAA+AGG | - | chr5_1:57271245-57271264 | None:intergenic | 50.0% | |
| ! | CTTTGGAGGAGCTTATCCAG+TGG | + | chr5_1:57271243-57271262 | Msa0739150:CDS | 50.0% |
| AGTAACAGTTGTGGAGGGAG+GGG | - | chr5_1:57271275-57271294 | None:intergenic | 50.0% | |
| GAAGTAACAGTTGTGGAGGG+AGG | - | chr5_1:57271277-57271296 | None:intergenic | 50.0% | |
| CTACGACTACATGAATCCGG+CGG | + | chr5_1:57271921-57271940 | Msa0739150:CDS | 50.0% | |
| TACGACTACATGAATCCGGC+GGG | + | chr5_1:57271922-57271941 | Msa0739150:CDS | 50.0% | |
| ! | AGAGACACTTTCTGGTGGAC+AGG | + | chr5_1:57271945-57271964 | Msa0739150:CDS | 50.0% |
| TCTGGTTGCTCAGGTCTATC+TGG | - | chr5_1:57271988-57272007 | None:intergenic | 50.0% | |
| GGTCTCATAGGAAGACCAAG+TGG | - | chr5_1:57272108-57272127 | None:intergenic | 50.0% | |
| TCCCTGCAGACAACCAACAT+AGG | - | chr5_1:57272391-57272410 | None:intergenic | 50.0% | |
| ATGGAGATGTCTCGGTTGGT+TGG | - | chr5_1:57272581-57272600 | None:intergenic | 50.0% | |
| TTCGATGGAGATGTCTCGGT+TGG | - | chr5_1:57272585-57272604 | None:intergenic | 50.0% | |
| ACCTTCGTCCGAGTCTTTAC+AGG | + | chr5_1:57272695-57272714 | Msa0739150:CDS | 50.0% | |
| TCCTGTAAAGACTCGGACGA+AGG | - | chr5_1:57272699-57272718 | None:intergenic | 50.0% | |
| GATCTGCAATTCTGCAGGGT+TGG | + | chr5_1:57272809-57272828 | Msa0739150:three_prime_UTR | 50.0% | |
| GCAATTCTGCAGGGTTGGAT+AGG | + | chr5_1:57272814-57272833 | Msa0739150:three_prime_UTR | 50.0% | |
| ATGAGCTTGTGGGGGATAGA+GGG | + | chr5_1:57272862-57272881 | Msa0739150:three_prime_UTR | 50.0% | |
| ATGCCTTATCCGGATCGACC+TGG | + | chr5_1:57269540-57269559 | Msa0739150:CDS | 55.0% | |
| TCACCAGGTCGATCCGGATA+AGG | - | chr5_1:57269546-57269565 | None:intergenic | 55.0% | |
| TCAGGTTCACCAGGTCGATC+CGG | - | chr5_1:57269552-57269571 | None:intergenic | 55.0% | |
| ! | TCAGGTTGCCCAACTCTCTC+AGG | - | chr5_1:57269862-57269881 | None:intergenic | 55.0% |
| CCAAAGGAAGCTGCCTGTTG+TGG | - | chr5_1:57271229-57271248 | None:intergenic | 55.0% | |
| CCACAACAGGCAGCTTCCTT+TGG | + | chr5_1:57271226-57271245 | Msa0739150:CDS | 55.0% | |
| CAACAGGCAGCTTCCTTTGG+AGG | + | chr5_1:57271229-57271248 | Msa0739150:CDS | 55.0% | |
| GCAGGAAACCCACCAGCATA+TGG | - | chr5_1:57271310-57271329 | None:intergenic | 55.0% | |
| !! | ATTCTCGGCATTGACCACGC+AGG | - | chr5_1:57271328-57271347 | None:intergenic | 55.0% |
| GCTGAGCTGGAGCAACTACA+TGG | + | chr5_1:57271423-57271442 | Msa0739150:CDS | 55.0% | |
| CATGAGCTTGTGGGGGATAG+AGG | + | chr5_1:57272861-57272880 | Msa0739150:three_prime_UTR | 55.0% | |
| ! | GCAGCACCTCGCCTGTCTTT+TGG | - | chr5_1:57270982-57271001 | None:intergenic | 60.0% |
| !! | ATGCTGGTGGGTTTCCTGCG+TGG | + | chr5_1:57271311-57271330 | Msa0739150:CDS | 60.0% |
| GCATTATGCCTGCGCTGAGC+TGG | + | chr5_1:57271410-57271429 | Msa0739150:CDS | 60.0% | |
| TAGTTGCTCCAGCTCAGCGC+AGG | - | chr5_1:57271421-57271440 | None:intergenic | 60.0% | |
| !! | CCAGAAAGTGTCTCTCCCGC+CGG | - | chr5_1:57271940-57271959 | None:intergenic | 60.0% |
| GCGGGAGAGACACTTTCTGG+TGG | + | chr5_1:57271940-57271959 | Msa0739150:CDS | 60.0% | |
| CCGGCGGGAGAGACACTTTC+TGG | + | chr5_1:57271937-57271956 | Msa0739150:CDS | 65.0% | |
| GAGGGAGGGGACGCAGCCAC+TGG | - | chr5_1:57271262-57271281 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 57268480 | 57273080 | 57268480 | ID=Msa0739150;Name=Msa0739150 |
| chr5_1 | mRNA | 57268480 | 57273080 | 57268480 | ID=Msa0739150-mRNA-1;Parent=Msa0739150;Name=Msa0739150-mRNA-1;_AED=0.24;_eAED=0.24;_QI=218|1|1|1|0.85|0.87|8|358|422 |
| chr5_1 | exon | 57268480 | 57268697 | 57268480 | ID=Msa0739150-mRNA-1:exon:16242;Parent=Msa0739150-mRNA-1 |
| chr5_1 | exon | 57268808 | 57268871 | 57268808 | ID=Msa0739150-mRNA-1:exon:16243;Parent=Msa0739150-mRNA-1 |
| chr5_1 | exon | 57269481 | 57269650 | 57269481 | ID=Msa0739150-mRNA-1:exon:16244;Parent=Msa0739150-mRNA-1 |
| chr5_1 | exon | 57269835 | 57269888 | 57269835 | ID=Msa0739150-mRNA-1:exon:16245;Parent=Msa0739150-mRNA-1 |
| chr5_1 | exon | 57270925 | 57271041 | 57270925 | ID=Msa0739150-mRNA-1:exon:16246;Parent=Msa0739150-mRNA-1 |
| chr5_1 | exon | 57271154 | 57271444 | 57271154 | ID=Msa0739150-mRNA-1:exon:16247;Parent=Msa0739150-mRNA-1 |
| chr5_1 | exon | 57271871 | 57272128 | 57271871 | ID=Msa0739150-mRNA-1:exon:16248;Parent=Msa0739150-mRNA-1 |
| chr5_1 | exon | 57272408 | 57273080 | 57272408 | ID=Msa0739150-mRNA-1:exon:16249;Parent=Msa0739150-mRNA-1 |
| chr5_1 | five_prime_UTR | 57268480 | 57268697 | 57268480 | ID=Msa0739150-mRNA-1:five_prime_utr;Parent=Msa0739150-mRNA-1 |
| chr5_1 | CDS | 57268808 | 57268871 | 57268808 | ID=Msa0739150-mRNA-1:cds;Parent=Msa0739150-mRNA-1 |
| chr5_1 | CDS | 57269481 | 57269650 | 57269481 | ID=Msa0739150-mRNA-1:cds;Parent=Msa0739150-mRNA-1 |
| chr5_1 | CDS | 57269835 | 57269888 | 57269835 | ID=Msa0739150-mRNA-1:cds;Parent=Msa0739150-mRNA-1 |
| chr5_1 | CDS | 57270925 | 57271041 | 57270925 | ID=Msa0739150-mRNA-1:cds;Parent=Msa0739150-mRNA-1 |
| chr5_1 | CDS | 57271154 | 57271444 | 57271154 | ID=Msa0739150-mRNA-1:cds;Parent=Msa0739150-mRNA-1 |
| chr5_1 | CDS | 57271871 | 57272128 | 57271871 | ID=Msa0739150-mRNA-1:cds;Parent=Msa0739150-mRNA-1 |
| chr5_1 | CDS | 57272408 | 57272722 | 57272408 | ID=Msa0739150-mRNA-1:cds;Parent=Msa0739150-mRNA-1 |
| chr5_1 | three_prime_UTR | 57272723 | 57273080 | 57272723 | ID=Msa0739150-mRNA-1:three_prime_utr;Parent=Msa0739150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
