Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740030 | XP_039690127.1 | 87.402 | 254 | 25 | 1 | 1 | 254 | 1 | 247 | 4.08e-160 | 455 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740030 | G7K4J6 | 87.402 | 254 | 25 | 1 | 1 | 254 | 1 | 247 | 1.95e-160 | 455 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0740030 | TR | ARID |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0740030 | MtrunA17_Chr5g0445971 | 86.826 | 167 | 20 | 1 | 1 | 167 | 1 | 165 | 9.01e-105 | 301 |
| Msa0740030 | MtrunA17_Chr5g0435401 | 68.161 | 223 | 67 | 2 | 34 | 252 | 44 | 266 | 1.37e-99 | 296 |
| Msa0740030 | MtrunA17_Chr5g0435401 | 66.250 | 80 | 26 | 1 | 176 | 254 | 264 | 343 | 5.04e-24 | 99.8 |
| Msa0740030 | MtrunA17_Chr1g0192841 | 60.606 | 99 | 30 | 2 | 165 | 254 | 44 | 142 | 1.69e-25 | 100 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 70 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAAACTGCTTTGTTTATA+TGG | 0.157345 | 5_1:-58869096 | Msa0740030:three_prime_UTR |
| ATTCCTTCTTGAGGAATATT+TGG | 0.163911 | 5_1:+58869651 | None:intergenic |
| AGTAAAACAGGTACAAGTTT+AGG | 0.215844 | 5_1:+58871154 | None:intergenic |
| CTTTCTAAGGTCCAGTTAAA+AGG | 0.247346 | 5_1:-58870462 | Msa0740030:intron |
| ACATAAGAGTGACACGTATT+TGG | 0.322703 | 5_1:-58871693 | Msa0740030:five_prime_UTR |
| TTGAGTTGTCTTGTTGTTAG+AGG | 0.323549 | 5_1:+58871605 | None:intergenic |
| AATTTGACTAGAGTAGTTCT+TGG | 0.346592 | 5_1:+58870369 | None:intergenic |
| TATGAAAGTCCATACAAATA+AGG | 0.353156 | 5_1:-58871648 | Msa0740030:five_prime_UTR |
| GTAAAACAGGTACAAGTTTA+GGG | 0.365515 | 5_1:+58871155 | None:intergenic |
| AGTTGTTTCTGCTCTAAAAC+TGG | 0.365684 | 5_1:-58870703 | Msa0740030:CDS |
| TTCTTGCTTTCCTCTACATA+TGG | 0.365771 | 5_1:+58869417 | None:intergenic |
| AACTACTCTAGTCAAATTAC+AGG | 0.369281 | 5_1:-58870364 | Msa0740030:intron |
| TGGTAACCACTTTGGTTCCT+TGG | 0.370453 | 5_1:+58869671 | None:intergenic |
| GATGTCGGACATTGATAAAA+AGG | 0.374210 | 5_1:-58869558 | Msa0740030:intron |
| AGGTTGGCCATGAAAAGAAA+TGG | 0.384383 | 5_1:-58870731 | Msa0740030:CDS |
| TTGAATGAGTTTGATATAGA+AGG | 0.393011 | 5_1:+58871480 | None:intergenic |
| CAACAATGCAGCAGTGGACT+TGG | 0.400057 | 5_1:-58869248 | Msa0740030:three_prime_UTR |
| TTGAGAAATTGTACTTCTAC+AGG | 0.406380 | 5_1:-58870617 | Msa0740030:CDS |
| AGAGGAAAGCAAGAAAATAA+AGG | 0.412073 | 5_1:-58869409 | Msa0740030:CDS |
| TAGAAGGTCTCCAAGTCATT+AGG | 0.425705 | 5_1:+58871496 | None:intergenic |
| TTGTGACCTCCAAGTAAAAC+AGG | 0.431064 | 5_1:+58871142 | None:intergenic |
| ACATTGGTGAGTTGTGTGTT+TGG | 0.432104 | 5_1:+58871550 | None:intergenic |
| GGAATATTTGGTAACCACTT+TGG | 0.442677 | 5_1:+58869663 | None:intergenic |
| CTCACCAATGTTGTCGTGTC+CGG | 0.446758 | 5_1:-58871538 | Msa0740030:CDS |
| GTGTAGCTGTCAAATATTCA+TGG | 0.446860 | 5_1:-58871671 | Msa0740030:five_prime_UTR |
| AGTGCACTCAAGATCTTAAG+AGG | 0.447998 | 5_1:-58869345 | Msa0740030:three_prime_UTR |
| GGTTGGCCATGAAAAGAAAT+GGG | 0.467471 | 5_1:-58870730 | Msa0740030:CDS |
| TTGGATATCTTTGCCGCCAT+CGG | 0.472444 | 5_1:+58870388 | None:intergenic |
| CCTGCAACCGCCAATGCAAA+AGG | 0.477405 | 5_1:-58870591 | Msa0740030:intron |
| TCGACTGAAAGCTGATCATC+AGG | 0.477735 | 5_1:-58869624 | Msa0740030:CDS |
| ATAAACAAAGCAGTTTAGCT+TGG | 0.493707 | 5_1:+58869100 | None:intergenic |
| ACAAGTTTAGGGATGTTTCT+CGG | 0.498193 | 5_1:+58871166 | None:intergenic |
| GTACGGTAGATTTGCTAACC+TGG | 0.501073 | 5_1:-58869198 | Msa0740030:three_prime_UTR |
| AACAAATGGCTATTGATACT+TGG | 0.501313 | 5_1:-58869586 | Msa0740030:CDS |
| CATACGCGTCCGAAAACAAA+TGG | 0.508342 | 5_1:-58869600 | Msa0740030:CDS |
| CTCAATGGAAGACAAGGAAA+TGG | 0.517620 | 5_1:-58871587 | Msa0740030:exon |
| GTCGAGCACATTCCTTCTTG+AGG | 0.518278 | 5_1:+58869642 | None:intergenic |
| TTGTCTTGTTGTTAGAGGAA+TGG | 0.525758 | 5_1:+58871610 | None:intergenic |
| TGAATGACTGTACTAGTTGT+TGG | 0.526633 | 5_1:-58869170 | Msa0740030:three_prime_UTR |
| TACTTGGAGGTCACAAGAAG+AGG | 0.530713 | 5_1:-58871135 | Msa0740030:CDS |
| GTATTCTTCTCCTAATGACT+TGG | 0.531995 | 5_1:-58871506 | Msa0740030:CDS |
| GTACAGTCATTCATATTCCC+AGG | 0.539258 | 5_1:+58869180 | None:intergenic |
| GAATGACTGTACTAGTTGTT+GGG | 0.543555 | 5_1:-58869169 | Msa0740030:three_prime_UTR |
| AATGTTGAATGTTTATCGTA+CGG | 0.547849 | 5_1:-58869215 | Msa0740030:three_prime_UTR |
| AAGGTCCAGTTAAAAGGAAG+CGG | 0.550807 | 5_1:-58870456 | Msa0740030:CDS |
| CTAACAACAAGACAACTCAA+TGG | 0.551952 | 5_1:-58871602 | Msa0740030:exon |
| CCAATGTTGTCGTGTCCGGC+GGG | 0.557640 | 5_1:-58871534 | Msa0740030:CDS |
| ACCAATGTTGTCGTGTCCGG+CGG | 0.561143 | 5_1:-58871535 | Msa0740030:CDS |
| AGGTCCAGTTAAAAGGAAGC+GGG | 0.572045 | 5_1:-58870455 | Msa0740030:CDS |
| CCGTCGATTGAGATAAACTA+GGG | 0.572781 | 5_1:+58870425 | None:intergenic |
| GTTTCTGCTCTAAAACTGGA+AGG | 0.575106 | 5_1:-58870699 | Msa0740030:CDS |
| TTACCAAATATTCCTCAAGA+AGG | 0.579179 | 5_1:-58869654 | Msa0740030:CDS |
| CCCGCCGGACACGACAACAT+TGG | 0.584078 | 5_1:+58871534 | None:intergenic |
| GGACGATGAAGATTATCCGA+TGG | 0.584176 | 5_1:-58870404 | Msa0740030:CDS |
| CCCTAGTTTATCTCAATCGA+CGG | 0.593570 | 5_1:-58870425 | Msa0740030:CDS |
| TCCGTCGATTGAGATAAACT+AGG | 0.600008 | 5_1:+58870424 | None:intergenic |
| AGACAACTCAATGGAAGACA+AGG | 0.602364 | 5_1:-58871593 | Msa0740030:exon |
| TTGGAGGTCACAAGAAGAGG+AGG | 0.603112 | 5_1:-58871132 | Msa0740030:CDS |
| TACGGTAGATTTGCTAACCT+GGG | 0.603269 | 5_1:-58869197 | Msa0740030:three_prime_UTR |
| AGAAACAGAGAGGTGCTCCA+AGG | 0.610360 | 5_1:-58869688 | Msa0740030:CDS |
| TTTCATGTAGCCATATGTAG+AGG | 0.614803 | 5_1:-58869427 | Msa0740030:intron |
| TGATACTTGGAAGAAGATGT+CGG | 0.619673 | 5_1:-58869573 | Msa0740030:CDS |
| GTGCACTCAAGATCTTAAGA+GGG | 0.655456 | 5_1:-58869344 | Msa0740030:three_prime_UTR |
| CAAGGAAATGGTGAAGACGA+CGG | 0.673865 | 5_1:-58871575 | Msa0740030:CDS |
| CGATGAAGATTATCCGATGG+CGG | 0.681671 | 5_1:-58870401 | Msa0740030:CDS |
| AGAAGAATACTGTTTCCCGC+CGG | 0.682409 | 5_1:+58871519 | None:intergenic |
| GAAAAGAAGCATAATGTGTG+TGG | 0.683498 | 5_1:-58869319 | Msa0740030:three_prime_UTR |
| AAAGAAAAGAAGAAACAGAG+AGG | 0.700139 | 5_1:-58869698 | Msa0740030:CDS |
| GGTGCTCCAAGGAACCAAAG+TGG | 0.716106 | 5_1:-58869677 | Msa0740030:CDS |
| GTTGGCCATGAAAAGAAATG+GGG | 0.719191 | 5_1:-58870729 | Msa0740030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TGTTATTACATATAATTATT+TGG | - | chr5_1:58869493-58869512 | Msa0740030:intron | 10.0% |
| !! | GTTATTACATATAATTATTT+GGG | - | chr5_1:58869494-58869513 | Msa0740030:intron | 10.0% |
| !! | ATTAAAAGTTGAAAGATTTA+TGG | - | chr5_1:58871240-58871259 | Msa0740030:intron | 15.0% |
| !!! | TTCAATTTACAACGTTTTTA+TGG | - | chr5_1:58869968-58869987 | Msa0740030:intron | 20.0% |
| !! | ATTATTTGGATGAGTTTAAA+GGG | - | chr5_1:58870681-58870700 | Msa0740030:CDS | 20.0% |
| !! | ATTTCAAATAAACCAACTAT+AGG | + | chr5_1:58871278-58871297 | None:intergenic | 20.0% |
| ! | TATGAAAGTCCATACAAATA+AGG | - | chr5_1:58869095-58869114 | Msa0740030:three_prime_UTR | 25.0% |
| ! | TTGAATGAGTTTGATATAGA+AGG | + | chr5_1:58869266-58869285 | None:intergenic | 25.0% |
| ! | TTGAAACTGCAAAATAGAAT+TGG | + | chr5_1:58869554-58869573 | None:intergenic | 25.0% |
| ! | TCTTGACTAATTTAGATTAC+AGG | + | chr5_1:58869893-58869912 | None:intergenic | 25.0% |
| ! | TGTAATCTAAATTAGTCAAG+AGG | - | chr5_1:58869892-58869911 | Msa0740030:intron | 25.0% |
| ! | GTAATCTAAATTAGTCAAGA+GGG | - | chr5_1:58869893-58869912 | Msa0740030:intron | 25.0% |
| ! | TAATCTAAATTAGTCAAGAG+GGG | - | chr5_1:58869894-58869913 | Msa0740030:intron | 25.0% |
| !!! | TCTGAGGAATTTTTGTTATA+AGG | + | chr5_1:58869944-58869963 | None:intergenic | 25.0% |
| ! | TGCTTAAGATAACCATAAAT+TGG | + | chr5_1:58870191-58870210 | None:intergenic | 25.0% |
| ! | TAGTCAAATTACAGGTAATA+AGG | - | chr5_1:58870387-58870406 | Msa0740030:CDS | 25.0% |
| !! | GGATCTAGAATATTAATGAT+TGG | - | chr5_1:58870408-58870427 | Msa0740030:CDS | 25.0% |
| ! | GGAAAATTGAATTCATTGAT+TGG | - | chr5_1:58870429-58870448 | Msa0740030:CDS | 25.0% |
| !! | TTGGTAACTCAATGATTATT+TGG | - | chr5_1:58870667-58870686 | Msa0740030:CDS | 25.0% |
| ! | GATTATTTGGATGAGTTTAA+AGG | - | chr5_1:58870680-58870699 | Msa0740030:CDS | 25.0% |
| !!! | TCAAAATCTACTTTGAAATC+TGG | + | chr5_1:58870786-58870805 | None:intergenic | 25.0% |
| ! | TAAAATACGAGCTTGAAATA+TGG | - | chr5_1:58870824-58870843 | Msa0740030:intron | 25.0% |
| !!! | TTCTTTTCTTTGTTACTTGA+GGG | + | chr5_1:58871036-58871055 | None:intergenic | 25.0% |
| !!! | TATCAATAGCCATTTGTTTT+CGG | + | chr5_1:58871155-58871174 | None:intergenic | 25.0% |
| ! | AATGTTGAATGTTTATCGTA+CGG | - | chr5_1:58871528-58871547 | Msa0740030:CDS | 25.0% |
| !!! | AAGTCTTTTTTTGGTTTTTG+AGG | - | chr5_1:58871598-58871617 | Msa0740030:exon | 25.0% |
| !! | AATGTTTTCACATTTCACTA+GGG | - | chr5_1:58871685-58871704 | Msa0740030:five_prime_UTR | 25.0% |
| !! | GAGCATTTTCCTTATTTGTA+TGG | + | chr5_1:58869107-58869126 | None:intergenic | 30.0% |
| ATTTCGTGCATTCATATTCA+AGG | - | chr5_1:58869379-58869398 | Msa0740030:exon | 30.0% | |
| GTAAAACAGGTACAAGTTTA+GGG | + | chr5_1:58869591-58869610 | None:intergenic | 30.0% | |
| AGTAAAACAGGTACAAGTTT+AGG | + | chr5_1:58869592-58869611 | None:intergenic | 30.0% | |
| ! | AAACTTGTACCTGTTTTACT+TGG | - | chr5_1:58869592-58869611 | Msa0740030:CDS | 30.0% |
| ! | TTTTCACCAGGTATATTGTT+TGG | - | chr5_1:58869634-58869653 | Msa0740030:CDS | 30.0% |
| ATGTAACCAAACAATATACC+TGG | + | chr5_1:58869643-58869662 | None:intergenic | 30.0% | |
| !!! | TAGAAGCTACATTTTGGTTA+TGG | + | chr5_1:58869837-58869856 | None:intergenic | 30.0% |
| ! | TGCAAATAGAAGCTACATTT+TGG | + | chr5_1:58869843-58869862 | None:intergenic | 30.0% |
| TTACAGGCACAACATATTTA+TGG | + | chr5_1:58869877-58869896 | None:intergenic | 30.0% | |
| TTGTAAATTGAACATCTCTG+AGG | + | chr5_1:58869960-58869979 | None:intergenic | 30.0% | |
| !! | TTTTTCAACTTGAGCACATA+AGG | + | chr5_1:58870081-58870100 | None:intergenic | 30.0% |
| TTGAGAAATTGTACTTCTAC+AGG | - | chr5_1:58870126-58870145 | Msa0740030:intron | 30.0% | |
| ! | AAAAGGTTAACCTTTTGCAT+TGG | + | chr5_1:58870165-58870184 | None:intergenic | 30.0% |
| ! | ATGCAAAAGGTTAACCTTTT+AGG | - | chr5_1:58870165-58870184 | Msa0740030:intron | 30.0% |
| ! | TAACCTTTTAGGCCAATTTA+TGG | - | chr5_1:58870176-58870195 | Msa0740030:intron | 30.0% |
| ! | TAACCATAAATTGGCCTAAA+AGG | + | chr5_1:58870182-58870201 | None:intergenic | 30.0% |
| !!! | TGTTTCAGTTTGTTGCATTT+TGG | - | chr5_1:58870220-58870239 | Msa0740030:intron | 30.0% |
| ACCTTAAATACTCCTTTCTA+AGG | - | chr5_1:58870268-58870287 | Msa0740030:intron | 30.0% | |
| !! | ACCTTAGAAAGGAGTATTTA+AGG | + | chr5_1:58870272-58870291 | None:intergenic | 30.0% |
| AATTTGACTAGAGTAGTTCT+TGG | + | chr5_1:58870377-58870396 | None:intergenic | 30.0% | |
| AACTACTCTAGTCAAATTAC+AGG | - | chr5_1:58870379-58870398 | Msa0740030:CDS | 30.0% | |
| ATTCACTAAAGTTCCAAAAC+CGG | - | chr5_1:58870595-58870614 | Msa0740030:CDS | 30.0% | |
| ATTGGATTCTTACTTAAAGC+AGG | - | chr5_1:58870973-58870992 | Msa0740030:intron | 30.0% | |
| !! | CTTCTTTTCTTTGTTACTTG+AGG | + | chr5_1:58871037-58871056 | None:intergenic | 30.0% |
| AAAGAAAAGAAGAAACAGAG+AGG | - | chr5_1:58871045-58871064 | Msa0740030:intron | 30.0% | |
| TTACCAAATATTCCTCAAGA+AGG | - | chr5_1:58871089-58871108 | Msa0740030:intron | 30.0% | |
| ATTCCTTCTTGAGGAATATT+TGG | + | chr5_1:58871095-58871114 | None:intergenic | 30.0% | |
| AACAAATGGCTATTGATACT+TGG | - | chr5_1:58871157-58871176 | Msa0740030:CDS | 30.0% | |
| !! | TTTTGCAATTAGCCTATAGT+TGG | - | chr5_1:58871263-58871282 | Msa0740030:intron | 30.0% |
| AGAGGAAAGCAAGAAAATAA+AGG | - | chr5_1:58871334-58871353 | Msa0740030:intron | 30.0% | |
| ATAAACAAAGCAGTTTAGCT+TGG | + | chr5_1:58871646-58871665 | None:intergenic | 30.0% | |
| !! | GCTAAACTGCTTTGTTTATA+TGG | - | chr5_1:58871647-58871666 | Msa0740030:five_prime_UTR | 30.0% |
| ! | CAATGTTTTCACATTTCACT+AGG | - | chr5_1:58871684-58871703 | Msa0740030:five_prime_UTR | 30.0% |
| ACATAAGAGTGACACGTATT+TGG | - | chr5_1:58869050-58869069 | Msa0740030:three_prime_UTR | 35.0% | |
| GTGTAGCTGTCAAATATTCA+TGG | - | chr5_1:58869072-58869091 | Msa0740030:three_prime_UTR | 35.0% | |
| !! | TTGTCTTGTTGTTAGAGGAA+TGG | + | chr5_1:58869136-58869155 | None:intergenic | 35.0% |
| !! | TTGAGTTGTCTTGTTGTTAG+AGG | + | chr5_1:58869141-58869160 | None:intergenic | 35.0% |
| CTAACAACAAGACAACTCAA+TGG | - | chr5_1:58869141-58869160 | Msa0740030:three_prime_UTR | 35.0% | |
| GTATTCTTCTCCTAATGACT+TGG | - | chr5_1:58869237-58869256 | Msa0740030:three_prime_UTR | 35.0% | |
| ! | ATTCAACTTTTAGACTTCGC+TGG | - | chr5_1:58869280-58869299 | Msa0740030:three_prime_UTR | 35.0% |
| ! | TTTTAGACTTCGCTGGAAAA+CGG | - | chr5_1:58869287-58869306 | Msa0740030:three_prime_UTR | 35.0% |
| !! | TGTGTGTTTACTGGTTTGTT+TGG | - | chr5_1:58869345-58869364 | Msa0740030:three_prime_UTR | 35.0% |
| GCAAAATAGAATTGGAACAG+AGG | + | chr5_1:58869546-58869565 | None:intergenic | 35.0% | |
| ACAAGTTTAGGGATGTTTCT+CGG | + | chr5_1:58869580-58869599 | None:intergenic | 35.0% | |
| GGTTACATCATATGATGACA+TGG | - | chr5_1:58869655-58869674 | Msa0740030:CDS | 35.0% | |
| GCAATGTCGAAAACTATATG+TGG | + | chr5_1:58869808-58869827 | None:intergenic | 35.0% | |
| TTCTCTTGAATGTTTCCTAC+AGG | - | chr5_1:58869992-58870011 | Msa0740030:intron | 35.0% | |
| !! | AGTTGTTTCTGCTCTAAAAC+TGG | - | chr5_1:58870040-58870059 | Msa0740030:intron | 35.0% |
| !! | GCTCAAGTTGAAAAACTCTA+TGG | - | chr5_1:58870086-58870105 | Msa0740030:intron | 35.0% |
| !! | CTTTTAACTGGACCTTAGAA+AGG | + | chr5_1:58870283-58870302 | None:intergenic | 35.0% |
| !! | CTTTCTAAGGTCCAGTTAAA+AGG | - | chr5_1:58870281-58870300 | Msa0740030:intron | 35.0% |
| !! | AAAAGTAGCAAAACCGGTTT+TGG | + | chr5_1:58870611-58870630 | None:intergenic | 35.0% |
| AACTCGAAAAGTAGCAAAAC+CGG | + | chr5_1:58870617-58870636 | None:intergenic | 35.0% | |
| ! | CTGTGGACATGAGTTTATTT+TGG | - | chr5_1:58870648-58870667 | Msa0740030:CDS | 35.0% |
| TGGATGAGTTTAAAGGGATT+TGG | - | chr5_1:58870687-58870706 | Msa0740030:CDS | 35.0% | |
| ACAACCCAAATTCAGTTTAG+AGG | - | chr5_1:58870912-58870931 | Msa0740030:intron | 35.0% | |
| TTCTTACTTAAAGCAGGAGA+TGG | - | chr5_1:58870979-58870998 | Msa0740030:intron | 35.0% | |
| ! | GGAATATTTGGTAACCACTT+TGG | + | chr5_1:58871083-58871102 | None:intergenic | 35.0% |
| TGATACTTGGAAGAAGATGT+CGG | - | chr5_1:58871170-58871189 | Msa0740030:CDS | 35.0% | |
| GATGTCGGACATTGATAAAA+AGG | - | chr5_1:58871185-58871204 | Msa0740030:intron | 35.0% | |
| TTTCATGTAGCCATATGTAG+AGG | - | chr5_1:58871316-58871335 | Msa0740030:intron | 35.0% | |
| TTCTTGCTTTCCTCTACATA+TGG | + | chr5_1:58871329-58871348 | None:intergenic | 35.0% | |
| ! | GAAAAGAAGCATAATGTGTG+TGG | - | chr5_1:58871424-58871443 | Msa0740030:intron | 35.0% |
| TGAATGACTGTACTAGTTGT+TGG | - | chr5_1:58871573-58871592 | Msa0740030:CDS | 35.0% | |
| GAATGACTGTACTAGTTGTT+GGG | - | chr5_1:58871574-58871593 | Msa0740030:CDS | 35.0% | |
| !!! | TTGTTGGGCAAGTCTTTTTT+TGG | - | chr5_1:58871589-58871608 | Msa0740030:exon | 35.0% |
| AGACAACTCAATGGAAGACA+AGG | - | chr5_1:58869150-58869169 | Msa0740030:three_prime_UTR | 40.0% | |
| CTCAATGGAAGACAAGGAAA+TGG | - | chr5_1:58869156-58869175 | Msa0740030:three_prime_UTR | 40.0% | |
| ACATTGGTGAGTTGTGTGTT+TGG | + | chr5_1:58869196-58869215 | None:intergenic | 40.0% | |
| TAGAAGGTCTCCAAGTCATT+AGG | + | chr5_1:58869250-58869269 | None:intergenic | 40.0% | |
| CCAGTAAACACACATGCAAA+CGG | + | chr5_1:58869339-58869358 | None:intergenic | 40.0% | |
| ! | CTTGTACCTGTTTTACTTGG+AGG | - | chr5_1:58869595-58869614 | Msa0740030:CDS | 40.0% |
| TTGTGACCTCCAAGTAAAAC+AGG | + | chr5_1:58869604-58869623 | None:intergenic | 40.0% | |
| CTTGAATGTTTCCTACAGGT+TGG | - | chr5_1:58869996-58870015 | Msa0740030:intron | 40.0% | |
| ! | AGGTTGGCCATGAAAAGAAA+TGG | - | chr5_1:58870012-58870031 | Msa0740030:intron | 40.0% |
| ! | GGTTGGCCATGAAAAGAAAT+GGG | - | chr5_1:58870013-58870032 | Msa0740030:intron | 40.0% |
| GTTGGCCATGAAAAGAAATG+GGG | - | chr5_1:58870014-58870033 | Msa0740030:intron | 40.0% | |
| ! | CTTCACCCCATTTCTTTTCA+TGG | + | chr5_1:58870022-58870041 | None:intergenic | 40.0% |
| !! | GTTTCTGCTCTAAAACTGGA+AGG | - | chr5_1:58870044-58870063 | Msa0740030:intron | 40.0% |
| ! | AGGTTAACCTTTTGCATTGG+CGG | + | chr5_1:58870162-58870181 | None:intergenic | 40.0% |
| AAGGTCCAGTTAAAAGGAAG+CGG | - | chr5_1:58870287-58870306 | Msa0740030:intron | 40.0% | |
| ! | CCGTCGATTGAGATAAACTA+GGG | + | chr5_1:58870321-58870340 | None:intergenic | 40.0% |
| CCCTAGTTTATCTCAATCGA+CGG | - | chr5_1:58870318-58870337 | Msa0740030:intron | 40.0% | |
| ! | TCCGTCGATTGAGATAAACT+AGG | + | chr5_1:58870322-58870341 | None:intergenic | 40.0% |
| CACAACTGCTCAATTCACTA+TGG | - | chr5_1:58870565-58870584 | Msa0740030:intron | 40.0% | |
| TACGAGCTTGAAATATGGAC+CGG | - | chr5_1:58870829-58870848 | Msa0740030:intron | 40.0% | |
| GCTGCCTCTAAACTGAATTT+GGG | + | chr5_1:58870919-58870938 | None:intergenic | 40.0% | |
| AGCTGCCTCTAAACTGAATT+TGG | + | chr5_1:58870920-58870939 | None:intergenic | 40.0% | |
| GTGCTTATGCTGCAATACAT+TGG | - | chr5_1:58870955-58870974 | Msa0740030:intron | 40.0% | |
| AGTGCACTCAAGATCTTAAG+AGG | - | chr5_1:58871398-58871417 | Msa0740030:intron | 40.0% | |
| GTGCACTCAAGATCTTAAGA+GGG | - | chr5_1:58871399-58871418 | Msa0740030:intron | 40.0% | |
| ! | TTTTGTCAACAATGCAGCAG+TGG | - | chr5_1:58871489-58871508 | Msa0740030:CDS | 40.0% |
| !! | TACGGTAGATTTGCTAACCT+GGG | - | chr5_1:58871546-58871565 | Msa0740030:CDS | 40.0% |
| GTACAGTCATTCATATTCCC+AGG | + | chr5_1:58871566-58871585 | None:intergenic | 40.0% | |
| CAAGGAAATGGTGAAGACGA+CGG | - | chr5_1:58869168-58869187 | Msa0740030:three_prime_UTR | 45.0% | |
| AGAAGAATACTGTTTCCCGC+CGG | + | chr5_1:58869227-58869246 | None:intergenic | 45.0% | |
| CCGTTTGCATGTGTGTTTAC+TGG | - | chr5_1:58869336-58869355 | Msa0740030:three_prime_UTR | 45.0% | |
| TACTTGGAGGTCACAAGAAG+AGG | - | chr5_1:58869608-58869627 | Msa0740030:CDS | 45.0% | |
| ! | AAGAAGAGGAGGTTTTCACC+AGG | - | chr5_1:58869622-58869641 | Msa0740030:CDS | 45.0% |
| AGCCTTCAACTTCAACCTAC+AGG | - | chr5_1:58869729-58869748 | Msa0740030:CDS | 45.0% | |
| GCCTTCAACTTCAACCTACA+GGG | - | chr5_1:58869730-58869749 | Msa0740030:CDS | 45.0% | |
| CCTTCAACTTCAACCTACAG+GGG | - | chr5_1:58869731-58869750 | Msa0740030:CDS | 45.0% | |
| TTGCTAGATTCAACCCCTGT+AGG | + | chr5_1:58869747-58869766 | None:intergenic | 45.0% | |
| GTGGACACACATTCGAACTT+TGG | + | chr5_1:58869789-58869808 | None:intergenic | 45.0% | |
| ! | TCTTTTCATGGCCAACCTGT+AGG | + | chr5_1:58870010-58870029 | None:intergenic | 45.0% |
| AGGTCCAGTTAAAAGGAAGC+GGG | - | chr5_1:58870288-58870307 | Msa0740030:intron | 45.0% | |
| GGACGATGAAGATTATCCGA+TGG | - | chr5_1:58870339-58870358 | Msa0740030:intron | 45.0% | |
| CGATGAAGATTATCCGATGG+CGG | - | chr5_1:58870342-58870361 | Msa0740030:intron | 45.0% | |
| TTGGATATCTTTGCCGCCAT+CGG | + | chr5_1:58870358-58870377 | None:intergenic | 45.0% | |
| CGAGTTTATTAGCTGCACTG+TGG | - | chr5_1:58870631-58870650 | Msa0740030:CDS | 45.0% | |
| GGTGGTTCAAACAAGATCTG+CGG | - | chr5_1:58870759-58870778 | Msa0740030:intron | 45.0% | |
| AGCACATCGTCGTTCAATCA+AGG | + | chr5_1:58870859-58870878 | None:intergenic | 45.0% | |
| ! | TGGTAACCACTTTGGTTCCT+TGG | + | chr5_1:58871075-58871094 | None:intergenic | 45.0% |
| TCGACTGAAAGCTGATCATC+AGG | - | chr5_1:58871119-58871138 | Msa0740030:intron | 45.0% | |
| CATACGCGTCCGAAAACAAA+TGG | - | chr5_1:58871143-58871162 | Msa0740030:CDS | 45.0% | |
| !! | GTACGGTAGATTTGCTAACC+TGG | - | chr5_1:58871545-58871564 | Msa0740030:CDS | 45.0% |
| CTCACCAATGTTGTCGTGTC+CGG | - | chr5_1:58869205-58869224 | Msa0740030:three_prime_UTR | 50.0% | |
| TTGGAGGTCACAAGAAGAGG+AGG | - | chr5_1:58869611-58869630 | Msa0740030:CDS | 50.0% | |
| ! | CCCCTGTAGGTTGAAGTTGA+AGG | + | chr5_1:58869734-58869753 | None:intergenic | 50.0% |
| ! | GAGTCCCGCTTCCTTTTAAC+TGG | + | chr5_1:58870295-58870314 | None:intergenic | 50.0% |
| CCACACGCTTTCAACCACAT+CGG | - | chr5_1:58870735-58870754 | Msa0740030:intron | 50.0% | |
| TGTTTGAACCACCACCGATG+TGG | + | chr5_1:58870752-58870771 | None:intergenic | 50.0% | |
| GTCGTTCAATCAAGGTCGTC+CGG | + | chr5_1:58870851-58870870 | None:intergenic | 50.0% | |
| !! | AGAAACAGAGAGGTGCTCCA+AGG | - | chr5_1:58871055-58871074 | Msa0740030:intron | 50.0% |
| GTCGAGCACATTCCTTCTTG+AGG | + | chr5_1:58871104-58871123 | None:intergenic | 50.0% | |
| ! | CAACAATGCAGCAGTGGACT+TGG | - | chr5_1:58871495-58871514 | Msa0740030:CDS | 50.0% |
| ACCAATGTTGTCGTGTCCGG+CGG | - | chr5_1:58869208-58869227 | Msa0740030:three_prime_UTR | 55.0% | |
| !! | CCTTTTGCATTGGCGGTTGC+AGG | + | chr5_1:58870155-58870174 | None:intergenic | 55.0% |
| CCTGCAACCGCCAATGCAAA+AGG | - | chr5_1:58870152-58870171 | Msa0740030:intron | 55.0% | |
| AGCGTGTGGTCACAGGATTG+TGG | + | chr5_1:58870724-58870743 | None:intergenic | 55.0% | |
| ! | GGTTGAAAGCGTGTGGTCAC+AGG | + | chr5_1:58870731-58870750 | None:intergenic | 55.0% |
| ! | CCGATGTGGTTGAAAGCGTG+TGG | + | chr5_1:58870738-58870757 | None:intergenic | 55.0% |
| CACGCTTTCAACCACATCGG+TGG | - | chr5_1:58870738-58870757 | Msa0740030:intron | 55.0% | |
| GCTTTCAACCACATCGGTGG+TGG | - | chr5_1:58870741-58870760 | Msa0740030:intron | 55.0% | |
| GGTGCTCCAAGGAACCAAAG+TGG | - | chr5_1:58871066-58871085 | Msa0740030:intron | 55.0% | |
| CCAATGTTGTCGTGTCCGGC+GGG | - | chr5_1:58869209-58869228 | Msa0740030:three_prime_UTR | 60.0% | |
| CCCGCCGGACACGACAACAT+TGG | + | chr5_1:58869212-58869231 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 58869031 | 58871734 | 58869031 | ID=Msa0740030;Name=Msa0740030 |
| chr5_1 | mRNA | 58869031 | 58871734 | 58869031 | ID=Msa0740030-mRNA-1;Parent=Msa0740030;Name=Msa0740030-mRNA-1;_AED=0.03;_eAED=0.03;_QI=129|0.8|0.83|1|1|1|6|352|254 |
| chr5_1 | exon | 58869031 | 58869439 | 58869031 | ID=Msa0740030-mRNA-1:exon:16816;Parent=Msa0740030-mRNA-1 |
| chr5_1 | exon | 58869559 | 58869770 | 58869559 | ID=Msa0740030-mRNA-1:exon:16815;Parent=Msa0740030-mRNA-1 |
| chr5_1 | exon | 58870365 | 58870475 | 58870365 | ID=Msa0740030-mRNA-1:exon:16814;Parent=Msa0740030-mRNA-1 |
| chr5_1 | exon | 58870592 | 58870751 | 58870592 | ID=Msa0740030-mRNA-1:exon:16813;Parent=Msa0740030-mRNA-1 |
| chr5_1 | exon | 58871122 | 58871197 | 58871122 | ID=Msa0740030-mRNA-1:exon:16812;Parent=Msa0740030-mRNA-1 |
| chr5_1 | exon | 58871457 | 58871734 | 58871457 | ID=Msa0740030-mRNA-1:exon:16811;Parent=Msa0740030-mRNA-1 |
| chr5_1 | five_prime_UTR | 58871606 | 58871734 | 58871606 | ID=Msa0740030-mRNA-1:five_prime_utr;Parent=Msa0740030-mRNA-1 |
| chr5_1 | CDS | 58871457 | 58871605 | 58871457 | ID=Msa0740030-mRNA-1:cds;Parent=Msa0740030-mRNA-1 |
| chr5_1 | CDS | 58871122 | 58871197 | 58871122 | ID=Msa0740030-mRNA-1:cds;Parent=Msa0740030-mRNA-1 |
| chr5_1 | CDS | 58870592 | 58870751 | 58870592 | ID=Msa0740030-mRNA-1:cds;Parent=Msa0740030-mRNA-1 |
| chr5_1 | CDS | 58870365 | 58870475 | 58870365 | ID=Msa0740030-mRNA-1:cds;Parent=Msa0740030-mRNA-1 |
| chr5_1 | CDS | 58869559 | 58869770 | 58869559 | ID=Msa0740030-mRNA-1:cds;Parent=Msa0740030-mRNA-1 |
| chr5_1 | CDS | 58869383 | 58869439 | 58869383 | ID=Msa0740030-mRNA-1:cds;Parent=Msa0740030-mRNA-1 |
| chr5_1 | three_prime_UTR | 58869031 | 58869382 | 58869031 | ID=Msa0740030-mRNA-1:three_prime_utr;Parent=Msa0740030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
