AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0740310

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740310 MtrunA17_Chr5g0440591 95.597 636 7 1 19 654 1 615 0.0 1263
Msa0740310 MtrunA17_Chr3g0118361 66.015 665 156 21 19 652 2 627 0.0 795
Msa0740310 MtrunA17_Chr2g0329151 60.661 333 116 6 29 351 2 329 6.80e-133 404
Msa0740310 MtrunA17_Chr3g0124291 62.791 258 85 4 64 316 29 280 3.40e-109 336
Msa0740310 MtrunA17_Chr8g0382561 60.837 263 97 3 57 316 12 271 1.44e-104 325
Msa0740310 MtrunA17_Chr6g0476301 54.430 237 106 2 121 356 1 236 6.09e-89 282
Msa0740310 MtrunA17_Chr3g0080401 55.702 228 100 1 121 348 1 227 3.11e-88 278
Msa0740310 MtrunA17_Chr6g0473191 54.852 237 105 2 121 356 1 236 3.83e-88 276
Msa0740310 MtrunA17_Chr6g0476291 59.024 205 83 1 121 324 1 205 1.01e-85 270
Msa0740310 MtrunA17_Chr7g0260281 43.902 123 56 4 110 222 1 120 1.28e-18 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740310 AT3G20770.1 61.751 651 207 16 20 652 1 627 0.0 741
Msa0740310 AT2G27050.1 58.589 652 183 20 19 652 1 583 0.0 667
Msa0740310 AT1G73730.2 61.682 321 92 6 52 354 11 318 5.22e-131 397
Msa0740310 AT1G73730.1 61.682 321 92 6 52 354 23 330 8.50e-131 397
Msa0740310 AT5G21120.2 48.086 418 182 9 40 450 31 420 3.88e-114 352
Msa0740310 AT5G21120.3 48.086 418 182 9 40 450 24 413 5.25e-114 352
Msa0740310 AT5G21120.1 48.086 418 182 9 40 450 24 413 5.25e-114 352
Msa0740310 AT5G10120.1 57.818 275 109 4 46 316 4 275 9.09e-105 326
Msa0740310 AT5G65100.1 42.958 426 190 10 62 447 33 445 5.65e-100 317

Find 189 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGCACAAGGCTTTGTTTA+TGG 0.190580 5_1:-59206649 Msa0740310:CDS
ACCTCGGTAGCATGAAAATT+AGG 0.199653 5_1:+59205653 None:intergenic
CCACCTTCATTCGATTTAAC+TGG 0.245739 5_1:-59205563 Msa0740310:CDS
GGTGGAGGGCCTTGATCTTT+AGG 0.277617 5_1:+59206295 None:intergenic
TTTAACTGGGTTTGGAGTTT+CGG 0.307024 5_1:-59205549 Msa0740310:CDS
AAGCTTTGTGGGAAAATAAC+TGG 0.313704 5_1:+59205626 None:intergenic
GCAGGCTGAACTGTAGAATT+AGG 0.320347 5_1:+59205596 None:intergenic
ATCTGCTTGATACTTGGATA+TGG 0.326260 5_1:+59206528 None:intergenic
AGGCACAAGGCTTTGTTTAT+GGG 0.329778 5_1:-59206648 Msa0740310:CDS
GATCTTTAGGCAAACCGATC+TGG 0.332130 5_1:+59206308 None:intergenic
TGCATTATCTGCTTGATACT+TGG 0.339703 5_1:+59206522 None:intergenic
ACACACCTTGCAAGAATTAC+AGG 0.349517 5_1:-59206455 Msa0740310:CDS
TCATCCTCGACCACCGAATC+TGG 0.353514 5_1:+59206883 None:intergenic
AAGCCAGGTTGCGCTTTCCT+TGG 0.356760 5_1:+59206135 None:intergenic
TACCTCCGCCAGAGGATAAC+GGG 0.362721 5_1:+59206056 None:intergenic
AACAACAAGATGTTTCAATA+TGG 0.364077 5_1:-59205100 Msa0740310:CDS
TGATGAGAAGGTTGCTGAAC+TGG 0.365013 5_1:+59205893 None:intergenic
CCTTTCAAGATAGGTCTTCC+AGG 0.366977 5_1:-59205736 Msa0740310:CDS
ATCTTTAGGCAAACCGATCT+GGG 0.368749 5_1:+59206309 None:intergenic
AAGTCATGAGGTTTCTTGTA+TGG 0.369753 5_1:+59206274 None:intergenic
ATTATTGTTGTTGTTGAGGT+TGG 0.371583 5_1:+59205220 None:intergenic
TTGCGAATCTTGGCTATATC+AGG 0.374628 5_1:+59206199 None:intergenic
GTCCTGTTGTTGCTGAATGA+TGG 0.379003 5_1:+59205343 None:intergenic
CCTCCACCATGGTGGCCAAC+CGG 0.379505 5_1:-59206349 Msa0740310:CDS
AATCTTCATCCATCCAATCT+TGG 0.380733 5_1:-59205941 Msa0740310:CDS
ATCAATTCCTTCTTTAGCCT+TGG 0.381143 5_1:+59206774 None:intergenic
TCATTCGATTTAACTGGGTT+TGG 0.382118 5_1:-59205557 Msa0740310:CDS
TTATCCTCTGGCGGAGGTAC+TGG 0.383389 5_1:-59206052 Msa0740310:CDS
TTCAATAACTACACAATTGG+TGG 0.384657 5_1:+59205451 None:intergenic
CCTCACGAGCTTGCGAATCT+TGG 0.387734 5_1:+59206189 None:intergenic
GGTTTCAAAAGGAGAGTTCA+TGG 0.396115 5_1:+59205241 None:intergenic
GTATGGTTCTTCATGTGATT+TGG 0.399911 5_1:-59205186 Msa0740310:CDS
CAAGCAGATAATGCAATTCC+AGG 0.406735 5_1:-59206514 Msa0740310:CDS
CATTCTATCCATCCCAAGAT+TGG 0.409448 5_1:+59205928 None:intergenic
TTGTGGTACACTTGGGGAAG+GGG 0.411806 5_1:-59206932 Msa0740310:CDS
TAGGTTGAACAAAGCTTTGT+GGG 0.411860 5_1:+59205615 None:intergenic
AGAAACAGTCCTGCAGGTTA+TGG 0.412726 5_1:-59205680 Msa0740310:CDS
CTCGCCTTGCCTTTCAAGAT+AGG 0.415938 5_1:-59205745 Msa0740310:CDS
TGGCGGAGGTACTGGTTCTA+TGG 0.421852 5_1:-59206044 Msa0740310:CDS
TTGATTGATGATGGCAAGCC+AGG 0.425788 5_1:+59206120 None:intergenic
AATAATATGCATCCCATGTA+TGG 0.430283 5_1:-59205203 Msa0740310:CDS
TCCTGTTGTTGCTGAATGAT+GGG 0.434795 5_1:+59205344 None:intergenic
GGCAAGGCAGTCTCAAGAAC+AGG 0.441318 5_1:-59206743 Msa0740310:CDS
ATCTTCATCCATCCAATCTT+GGG 0.443460 5_1:-59205940 Msa0740310:CDS
TGAGGTTTCTTGTATGGTGG+AGG 0.446444 5_1:+59206280 None:intergenic
TTGTTGAGGTTGGTTTCAAA+AGG 0.451254 5_1:+59205230 None:intergenic
GGGAGAGGTTGTCACAAACT+TGG 0.451465 5_1:-59205864 Msa0740310:CDS
CCTCGGTAGCATGAAAATTA+GGG 0.456819 5_1:+59205654 None:intergenic
CACCTTCATTCGATTTAACT+GGG 0.462918 5_1:-59205562 Msa0740310:CDS
GGCTATGATACACATGTTAT+AGG 0.462962 5_1:-59205491 Msa0740310:CDS
TCACAAACTTGGATTTCATT+CGG 0.464079 5_1:-59205853 Msa0740310:CDS
TGATTATAGTGATGAAGAAA+TGG 0.464489 5_1:-59206863 Msa0740310:CDS
GGATTCCTCTTGATTGATGA+TGG 0.464516 5_1:+59206111 None:intergenic
TTTGTGGTACACTTGGGGAA+GGG 0.466355 5_1:-59206933 Msa0740310:CDS
GCCCATCATTCAGCAACAAC+AGG 0.469177 5_1:-59205345 Msa0740310:CDS
GGCCAACCGGGACTGAAGAC+TGG 0.469478 5_1:-59206336 Msa0740310:CDS
GCATATTATTGTTGTTGTTG+AGG 0.474406 5_1:+59205216 None:intergenic
CAGGCAAACCGAGCCAGATT+CGG 0.479153 5_1:-59206896 Msa0740310:CDS
TCGTGAATGGTGGAAGGATA+AGG 0.479265 5_1:-59206578 Msa0740310:CDS
TCCTCAGAGGCGTTTCCCAT+TGG 0.490597 5_1:-59206383 Msa0740310:CDS
GAGAGTTCATGGCCTTGAAC+CGG 0.490862 5_1:+59205252 None:intergenic
AAGGGGATATTTCTTCTGTC+AGG 0.493214 5_1:-59206915 Msa0740310:CDS
GAGGATTGCCCTTCTCCAAT+GGG 0.493994 5_1:+59206368 None:intergenic
ACGAAGATTGTCAGATGCTC+CGG 0.495666 5_1:+59206597 None:intergenic
AATTCCCGAGAAGGGAAAAC+CGG 0.496336 5_1:-59206623 Msa0740310:CDS
TTGTCAGATGCTCCGGTCAC+CGG 0.496468 5_1:+59206604 None:intergenic
GCAACCTTCTCATCAAATCA+AGG 0.497251 5_1:-59205885 Msa0740310:CDS
GGGCCACCAGTCTTCAGTCC+CGG 0.499009 5_1:+59206330 None:intergenic
CCGGTTGGCCACCATGGTGG+AGG 0.499341 5_1:+59206349 None:intergenic
AAATCAGTTTGACCGGTTCA+AGG 0.500225 5_1:-59205264 Msa0740310:CDS
CATCAATCAAGAGGAATCCT+TGG 0.505411 5_1:-59206107 Msa0740310:CDS
GATGATGATGTTTGAGGACA+TGG 0.505605 5_1:-59206980 Msa0740310:CDS
TCTTGCAAGGTGTGTGGAGT+TGG 0.508004 5_1:+59206463 None:intergenic
TGCAGTGAGTATGATGTTGA+TGG 0.508204 5_1:-59206010 Msa0740310:CDS
GTACCTCCGCCAGAGGATAA+CGG 0.514038 5_1:+59206055 None:intergenic
TGATACTTGGATATGGCAGC+TGG 0.514747 5_1:+59206535 None:intergenic
ATGATCAGCGACCTTATGTC+AGG 0.516438 5_1:-59205512 Msa0740310:CDS
CGAGCCAGATTCGGTGGTCG+AGG 0.516671 5_1:-59206887 Msa0740310:CDS
GCAATTCCAGGGAAGAATGA+TGG 0.516754 5_1:-59206502 Msa0740310:CDS
CTCGACCACCGAATCTGGCT+CGG 0.517344 5_1:+59206888 None:intergenic
GAATTACAGGACACAACCTT+GGG 0.517537 5_1:-59206442 Msa0740310:CDS
TAACGACTTCAACATGATGA+TGG 0.518203 5_1:-59205816 Msa0740310:CDS
TTGCATCCATCATTCTTCCC+TGG 0.518960 5_1:+59206496 None:intergenic
GGAGGATTGCCCTTCTCCAA+TGG 0.519182 5_1:+59206367 None:intergenic
ATCGGTTTGCCTAAAGATCA+AGG 0.519416 5_1:-59206304 Msa0740310:CDS
ATGAGCTTGAGCGGAGGATG+TGG 0.520497 5_1:-59206834 Msa0740310:CDS
ATCACATGAAGAACCATACA+TGG 0.521967 5_1:+59205190 None:intergenic
AGAATTACAGGACACAACCT+TGG 0.524464 5_1:-59206443 Msa0740310:CDS
CTCCACCATGGTGGCCAACC+GGG 0.526692 5_1:-59206348 Msa0740310:CDS
GTGTATCATAGCCTGACATA+AGG 0.531266 5_1:+59205501 None:intergenic
GAGGCGTTTCCCATTGGAGA+AGG 0.531537 5_1:-59206377 Msa0740310:CDS
GAGGTTTCTTGTATGGTGGA+GGG 0.533491 5_1:+59206281 None:intergenic
TCTCCCTTGATTTGATGAGA+AGG 0.537373 5_1:+59205881 None:intergenic
ATTCAATTGATGATTGTCCC+TGG 0.537403 5_1:+59205718 None:intergenic
ATCTTGGGATGGATAGAATG+AGG 0.537865 5_1:-59205925 Msa0740310:CDS
TAGATCCTCCTTAAAATCAA+AGG 0.539849 5_1:+59205160 None:intergenic
TCAGTCCCGGTTGGCCACCA+TGG 0.540302 5_1:+59206343 None:intergenic
ACTTGGATTTCATTCGGAAG+AGG 0.540565 5_1:-59205847 Msa0740310:CDS
TTAGGTTGAACAAAGCTTTG+TGG 0.541625 5_1:+59205614 None:intergenic
GGGTTTGGAGTTTCGGAGGA+CGG 0.542268 5_1:-59205542 Msa0740310:CDS
GAACAAACCAAGGCTAAAGA+AGG 0.542936 5_1:-59206781 Msa0740310:CDS
TTTGAATCAAGGAATGGTGA+TGG 0.544516 5_1:-59205312 Msa0740310:CDS
CAGCCAAGGAAAGCGCAACC+TGG 0.544615 5_1:-59206138 Msa0740310:CDS
GAAGTACATGCTGAAAATGA+TGG 0.545558 5_1:-59206680 Msa0740310:CDS
AGCTTGAGCGGAGGATGTGG+AGG 0.545764 5_1:-59206831 Msa0740310:CDS
GAGAAGGGAAAACCGGTGAC+CGG 0.547110 5_1:-59206616 Msa0740310:CDS
AGAAACAGAAACAGTCCTGC+AGG 0.548675 5_1:-59205686 Msa0740310:CDS
GGACTGTTTCTGTTTCTATG+TGG 0.550312 5_1:+59205692 None:intergenic
GAAGGTGGAACTAAACTAGC+AGG 0.551330 5_1:+59205578 None:intergenic
AGGATAAGGTTCGGTTCGAT+AGG 0.552012 5_1:-59206564 Msa0740310:CDS
TTAGGGTCGCCATAACCTGC+AGG 0.552645 5_1:+59205671 None:intergenic
GCTGAATGATGGGCTGAGAA+AGG 0.553081 5_1:+59205354 None:intergenic
GCTGAATGATGGGCTGAGAA+AGG 0.553081 5_1:+59205387 None:intergenic
GCTGAATGATGGGCTGAGAA+AGG 0.553081 5_1:+59205420 None:intergenic
TTCTCATCAAATCAAGGGAG+AGG 0.554659 5_1:-59205879 Msa0740310:CDS
CTTTCAAGATAGGTCTTCCA+GGG 0.555713 5_1:-59205735 Msa0740310:CDS
TATGGGATAATTCCCGAGAA+GGG 0.556990 5_1:-59206631 Msa0740310:CDS
GGAAAAGATGATGATGTTTG+AGG 0.557260 5_1:-59206986 Msa0740310:CDS
CTATCCATCCCAAGATTGGA+TGG 0.557944 5_1:+59205932 None:intergenic
CTGACAATCTTCGTGAATGG+TGG 0.558385 5_1:-59206588 Msa0740310:CDS
CCTGGAAGACCTATCTTGAA+AGG 0.560673 5_1:+59205736 None:intergenic
CTACAACTACAAGGAGGAGT+AGG 0.563021 5_1:-59205140 Msa0740310:CDS
AACCCAGTTAAATCGAATGA+AGG 0.563631 5_1:+59205560 None:intergenic
GCGAGGAAAATCAGTTTGAC+CGG 0.565875 5_1:-59205271 Msa0740310:CDS
CATCTGACAATCTTCGTGAA+TGG 0.567255 5_1:-59206591 Msa0740310:CDS
CCAAGATTCGCAAGCTCGTG+AGG 0.567603 5_1:-59206189 Msa0740310:CDS
TCATGAGGTTTCTTGTATGG+TGG 0.567990 5_1:+59206277 None:intergenic
TGGATAAAGTTCTCGAGCCA+AGG 0.568027 5_1:+59206090 None:intergenic
CACCAGTCTTCAGTCCCGGT+TGG 0.570122 5_1:+59206334 None:intergenic
TTATGGGATAATTCCCGAGA+AGG 0.572124 5_1:-59206632 Msa0740310:CDS
AATGGTGGAAGGATAAGGTT+CGG 0.572803 5_1:-59206573 Msa0740310:CDS
AGGCGTTTCCCATTGGAGAA+GGG 0.573544 5_1:-59206376 Msa0740310:CDS
AGAAGGAATTGATGCTGCAA+AGG 0.574701 5_1:-59206764 Msa0740310:CDS
GCAGTGAGTATGATGTTGAT+GGG 0.574936 5_1:-59206009 Msa0740310:CDS
GTCCCGGTTGGCCACCATGG+TGG 0.575585 5_1:+59206346 None:intergenic
AACTGGGTTTGGAGTTTCGG+AGG 0.578482 5_1:-59205546 Msa0740310:CDS
CGAGTCAAACTTTGATGTGG+AGG 0.584361 5_1:-59205978 Msa0740310:CDS
AATGGGAAACGCCTCTGAGG+AGG 0.586375 5_1:+59206385 None:intergenic
TGCTGATAAGAGAGAACCCA+AGG 0.586902 5_1:+59206426 None:intergenic
TAGTGATGAAGAAATGGATG+TGG 0.587114 5_1:-59206857 Msa0740310:CDS
GAAAATGATGGAGGTTTGCA+AGG 0.590144 5_1:-59206668 Msa0740310:CDS
ATGGAGGTTTGCAAGGCACA+AGG 0.590635 5_1:-59206661 Msa0740310:CDS
TGTAATTCTTGCAAGGTGTG+TGG 0.593213 5_1:+59206457 None:intergenic
TGTGTCCTGTAATTCTTGCA+AGG 0.594212 5_1:+59206450 None:intergenic
TCTTGGGATGGATAGAATGA+GGG 0.594489 5_1:-59205924 Msa0740310:CDS
CAACCTTCTCATCAAATCAA+GGG 0.596906 5_1:-59205884 Msa0740310:CDS
TCAAGATAAAATGACAGCCA+AGG 0.597129 5_1:-59206152 Msa0740310:CDS
TCATCCATCCAATCTTGGGA+TGG 0.598664 5_1:-59205936 Msa0740310:CDS
CCAGTTAAATCGAATGAAGG+TGG 0.598931 5_1:+59205563 None:intergenic
CTTGGGATGGATAGAATGAG+GGG 0.601634 5_1:-59205923 Msa0740310:CDS
CAATCTTCGTGAATGGTGGA+AGG 0.601878 5_1:-59206584 Msa0740310:CDS
AAGCAGATAATGCAATTCCA+GGG 0.603704 5_1:-59206513 Msa0740310:CDS
GGCAGTCTCAAGAACAGGCG+AGG 0.607320 5_1:-59206738 Msa0740310:CDS
AAGGAGGATCTACAACTACA+AGG 0.608788 5_1:-59205149 Msa0740310:CDS
AAGGTTCGGTTCGATAGGAA+TGG 0.610184 5_1:-59206559 Msa0740310:CDS
GCAAACCGAGCCAGATTCGG+TGG 0.610299 5_1:-59206893 Msa0740310:CDS
ACTACAAGGAGGAGTAGGAA+TGG 0.611304 5_1:-59205135 Msa0740310:CDS
AAGATGTCAAGAGCTCAAGA+TGG 0.612194 5_1:-59206709 Msa0740310:CDS
GCTTCGCTGTAAGCGCATTG+AGG 0.613195 5_1:+59205767 None:intergenic
CGGCGAGTCAAACTTTGATG+TGG 0.614982 5_1:-59205981 Msa0740310:CDS
TCCAATGGGAAACGCCTCTG+AGG 0.618975 5_1:+59206382 None:intergenic
GAAGACTGGTGGCCCCAGAT+CGG 0.620125 5_1:-59206322 Msa0740310:CDS
AAGACCTATCTTGAAAGGCA+AGG 0.620631 5_1:+59205741 None:intergenic
TATGATGTTGATGGGGCTGA+CGG 0.622733 5_1:-59206001 Msa0740310:CDS
GCTTGCCATCATCAATCAAG+AGG 0.624863 5_1:-59206116 Msa0740310:CDS
GAATTGATGCTGCAAAGGCA+AGG 0.624873 5_1:-59206759 Msa0740310:CDS
GAATCAAGGAATGGTGATGG+AGG 0.630262 5_1:-59205309 Msa0740310:CDS
ACCTCCGCCAGAGGATAACG+GGG 0.630408 5_1:+59206057 None:intergenic
AATGATGGATGCAATTCCAT+CGG 0.635466 5_1:-59206487 Msa0740310:CDS
GGTGTGTGGAGTTGGACCGA+TGG 0.641543 5_1:+59206471 None:intergenic
GAAAATAACTGGCTTAACCT+CGG 0.643010 5_1:+59205637 None:intergenic
AGTCTCAAGAACAGGCGAGG+AGG 0.643483 5_1:-59206735 Msa0740310:CDS
GCTTGAGCGGAGGATGTGGA+GGG 0.653404 5_1:-59206830 Msa0740310:CDS
TGGATGTGGATGAGCTTGAG+CGG 0.660750 5_1:-59206843 Msa0740310:CDS
CAACCGGGACTGAAGACTGG+TGG 0.661902 5_1:-59206333 Msa0740310:CDS
TCTTTAGGCAAACCGATCTG+GGG 0.665997 5_1:+59206310 None:intergenic
ATGATGATGTTTGAGGACAT+GGG 0.668420 5_1:-59206979 Msa0740310:CDS
AGCACTGCGATCCTCCTCAG+AGG 0.670631 5_1:-59206396 Msa0740310:CDS
AGAACCAGTACCTCCGCCAG+AGG 0.682787 5_1:+59206048 None:intergenic
TCACATGAAGAACCATACAT+GGG 0.685805 5_1:+59205191 None:intergenic
CTCCGCCAGAGGATAACGGG+GGG 0.685928 5_1:+59206059 None:intergenic
GCGACTGAAAGAACAAACCA+AGG 0.688069 5_1:-59206791 Msa0740310:CDS
CAGTGAGTATGATGTTGATG+GGG 0.693933 5_1:-59206008 Msa0740310:CDS
CCTCCGCCAGAGGATAACGG+GGG 0.696205 5_1:+59206058 None:intergenic
AGGGCAATCCTCCACCATGG+TGG 0.709968 5_1:-59206357 Msa0740310:CDS
ATGTGGATGAGCTTGAGCGG+AGG 0.710465 5_1:-59206840 Msa0740310:CDS
AGAAGGGCAATCCTCCACCA+TGG 0.713618 5_1:-59206360 Msa0740310:CDS
GTACATGCTGAAAATGATGG+AGG 0.724912 5_1:-59206677 Msa0740310:CDS
GAGGATCTACAACTACAAGG+AGG 0.776973 5_1:-59205146 Msa0740310:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGGTTTTATTATATTGTTT+TGG + chr5_1:59205129-59205148 None:intergenic 15.0%
!! TTACAAGAAAATGAAGAAAT+GGG + chr5_1:59205296-59205315 None:intergenic 20.0%
!!! ATTGTATTGATCAAAAAACA+AGG + chr5_1:59205371-59205390 None:intergenic 20.0%
!!! TTTTTGATCAATACAATTTG+TGG - chr5_1:59205374-59205393 Msa0740310:CDS 20.0%
!!! TTTTGATCAATACAATTTGT+GGG - chr5_1:59205375-59205394 Msa0740310:CDS 20.0%
!!! ATGTTTTTTTTTACTGCTTT+TGG - chr5_1:59205506-59205525 Msa0740310:CDS 20.0%
!!! TGTTTTTTTTTACTGCTTTT+GGG - chr5_1:59205507-59205526 Msa0740310:CDS 20.0%
!! GCTTCAATAAAAATTGTTAA+AGG + chr5_1:59205695-59205714 None:intergenic 20.0%
!!! TTGTTATTTCATTTAGTGAT+TGG - chr5_1:59205866-59205885 Msa0740310:CDS 20.0%
!!! ATATTTTTACTTCATCTAGA+AGG - chr5_1:59206045-59206064 Msa0740310:CDS 20.0%
!!! ATTTTCAATAACTACACAAT+TGG + chr5_1:59207808-59207827 None:intergenic 20.0%
! AAATTTGAAGAAATTGGAGA+AGG + chr5_1:59205236-59205255 None:intergenic 25.0%
! CTTACAAGAAAATGAAGAAA+TGG + chr5_1:59205297-59205316 None:intergenic 25.0%
! TTTGATCAATACAATTTGTG+GGG - chr5_1:59205376-59205395 Msa0740310:CDS 25.0%
!!! ATTAGTTTTGTTGCTATTCA+TGG - chr5_1:59205592-59205611 Msa0740310:CDS 25.0%
!!! AAGTATCTGCTTTTGAAAAT+TGG - chr5_1:59205969-59205988 Msa0740310:CDS 25.0%
!!! AGTATCTGCTTTTGAAAATT+GGG - chr5_1:59205970-59205989 Msa0740310:CDS 25.0%
!!! CTAAATTGTTCTTTGTTTTG+TGG - chr5_1:59206090-59206109 Msa0740310:CDS 25.0%
! ATCAGCTTCAAACTATAAAT+CGG + chr5_1:59206206-59206225 None:intergenic 25.0%
!!! AGCTGATTTTTGTTTTCATT+TGG - chr5_1:59206219-59206238 Msa0740310:CDS 25.0%
!!! GCTGATTTTTGTTTTCATTT+GGG - chr5_1:59206220-59206239 Msa0740310:CDS 25.0%
! TGATTATAGTGATGAAGAAA+TGG - chr5_1:59206390-59206409 Msa0740310:CDS 25.0%
!! GACAATTTCTTTTTGAATCA+AGG - chr5_1:59207930-59207949 Msa0740310:intron 25.0%
!! TTTCTTTTTGAATCAAGGAA+TGG - chr5_1:59207935-59207954 Msa0740310:intron 25.0%
! AACAACAAGATGTTTCAATA+TGG - chr5_1:59208153-59208172 Msa0740310:intron 25.0%
GAGAGAGTTAGAAAAAGAAA+AGG + chr5_1:59205191-59205210 None:intergenic 30.0%
ATGGAGACTAAAGTCAATAA+GGG + chr5_1:59205264-59205283 None:intergenic 30.0%
TATGGAGACTAAAGTCAATA+AGG + chr5_1:59205265-59205284 None:intergenic 30.0%
GAATAGCAACAAAACTAATC+AGG + chr5_1:59205591-59205610 None:intergenic 30.0%
AACAATATCAGATAGACTAG+AGG + chr5_1:59205935-59205954 None:intergenic 30.0%
!!! TTTGTTTTGTGGCTTTTGAT+AGG - chr5_1:59206101-59206120 Msa0740310:CDS 30.0%
!! GAGAATTCATTGATTTGAGT+TGG - chr5_1:59206146-59206165 Msa0740310:CDS 30.0%
TCAGCTTCAAACTATAAATC+GGG + chr5_1:59206205-59206224 None:intergenic 30.0%
TTTCATTTGGGTCATCTTTA+AGG - chr5_1:59206232-59206251 Msa0740310:CDS 30.0%
TTCATTTGGGTCATCTTTAA+GGG - chr5_1:59206233-59206252 Msa0740310:CDS 30.0%
! TTGAAAAAAGCATGGAAAGT+CGG - chr5_1:59207000-59207019 Msa0740310:CDS 30.0%
!!! CATTTTATCTTGAAGGCATT+TGG + chr5_1:59207094-59207113 None:intergenic 30.0%
! ATTGGATGGATGAAGATTTT+CGG + chr5_1:59207310-59207329 None:intergenic 30.0%
TCACAAACTTGGATTTCATT+CGG - chr5_1:59207400-59207419 Msa0740310:intron 30.0%
TTCAATAACTACACAATTGG+TGG + chr5_1:59207805-59207824 None:intergenic 30.0%
!!! TTTTGTTGTTGCTGAATGAT+GGG + chr5_1:59207846-59207865 None:intergenic 30.0%
!!! TTTTGTTGTTGCTGAATGAT+GGG + chr5_1:59207846-59207865 None:intergenic 30.0%
! ATTATTGTTGTTGTTGAGGT+TGG + chr5_1:59208036-59208055 None:intergenic 30.0%
! GCATATTATTGTTGTTGTTG+AGG + chr5_1:59208040-59208059 None:intergenic 30.0%
AATAATATGCATCCCATGTA+TGG - chr5_1:59208050-59208069 Msa0740310:intron 30.0%
TAGATCCTCCTTAAAATCAA+AGG + chr5_1:59208096-59208115 None:intergenic 30.0%
TTGAAGAAATTGGAGAAGGA+AGG + chr5_1:59205232-59205251 None:intergenic 35.0%
GAGGGCAAATTTGAAGAAAT+TGG + chr5_1:59205242-59205261 None:intergenic 35.0%
AGACTAAAGTCAATAAGGGA+GGG + chr5_1:59205260-59205279 None:intergenic 35.0%
AAGAAATGGGTCTTTGAGTA+TGG + chr5_1:59205283-59205302 None:intergenic 35.0%
GAGGCTAAAAAACAAGAACA+TGG + chr5_1:59205916-59205935 None:intergenic 35.0%
!! ATCTGCTTTTGAAAATTGGG+TGG - chr5_1:59205973-59205992 Msa0740310:CDS 35.0%
! GTGGCTTTTGATAGGTTTAA+AGG - chr5_1:59206109-59206128 Msa0740310:CDS 35.0%
TGGTGTTTAAGAGTTAAACG+AGG - chr5_1:59206166-59206185 Msa0740310:CDS 35.0%
GGTGTTTAAGAGTTAAACGA+GGG - chr5_1:59206167-59206186 Msa0740310:CDS 35.0%
CAGCTTCAAACTATAAATCG+GGG + chr5_1:59206204-59206223 None:intergenic 35.0%
! AACATCATCATCTTTTCCCA+GGG + chr5_1:59206265-59206284 None:intergenic 35.0%
! AAACATCATCATCTTTTCCC+AGG + chr5_1:59206266-59206285 None:intergenic 35.0%
! GGAAAAGATGATGATGTTTG+AGG - chr5_1:59206267-59206286 Msa0740310:CDS 35.0%
! ATGATGATGTTTGAGGACAT+GGG - chr5_1:59206274-59206293 Msa0740310:CDS 35.0%
! ATGTGTTTTGTGGTACACTT+GGG - chr5_1:59206314-59206333 Msa0740310:CDS 35.0%
TAGTGATGAAGAAATGGATG+TGG - chr5_1:59206396-59206415 Msa0740310:CDS 35.0%
ATCAATTCCTTCTTTAGCCT+TGG + chr5_1:59206482-59206501 None:intergenic 35.0%
GAAGTACATGCTGAAAATGA+TGG - chr5_1:59206573-59206592 Msa0740310:CDS 35.0%
ATCTGCTTGATACTTGGATA+TGG + chr5_1:59206728-59206747 None:intergenic 35.0%
TGCATTATCTGCTTGATACT+TGG + chr5_1:59206734-59206753 None:intergenic 35.0%
AAGCAGATAATGCAATTCCA+GGG - chr5_1:59206740-59206759 Msa0740310:CDS 35.0%
!! AATGATGGATGCAATTCCAT+CGG - chr5_1:59206766-59206785 Msa0740310:CDS 35.0%
AAGTCATGAGGTTTCTTGTA+TGG + chr5_1:59206982-59207001 None:intergenic 35.0%
!!! CATGCTTTTTTCAAGTCATG+AGG + chr5_1:59206994-59207013 None:intergenic 35.0%
CTCATGACTTGAAAAAAGCA+TGG - chr5_1:59206992-59207011 Msa0740310:CDS 35.0%
!!! TGGCTGTCATTTTATCTTGA+AGG + chr5_1:59207101-59207120 None:intergenic 35.0%
TCAAGATAAAATGACAGCCA+AGG - chr5_1:59207101-59207120 Msa0740310:intron 35.0%
!!! GATGAAGATTTTCGGGTTTT+CGG + chr5_1:59207302-59207321 None:intergenic 35.0%
! TTGGATGGATGAAGATTTTC+GGG + chr5_1:59207309-59207328 None:intergenic 35.0%
AATCTTCATCCATCCAATCT+TGG - chr5_1:59207312-59207331 Msa0740310:intron 35.0%
ATCTTCATCCATCCAATCTT+GGG - chr5_1:59207313-59207332 Msa0740310:intron 35.0%
CAACCTTCTCATCAAATCAA+GGG - chr5_1:59207369-59207388 Msa0740310:intron 35.0%
TAACGACTTCAACATGATGA+TGG - chr5_1:59207437-59207456 Msa0740310:intron 35.0%
! ATTCAATTGATGATTGTCCC+TGG + chr5_1:59207538-59207557 None:intergenic 35.0%
! GAAAATAACTGGCTTAACCT+CGG + chr5_1:59207619-59207638 None:intergenic 35.0%
! AAGCTTTGTGGGAAAATAAC+TGG + chr5_1:59207630-59207649 None:intergenic 35.0%
! TAGGTTGAACAAAGCTTTGT+GGG + chr5_1:59207641-59207660 None:intergenic 35.0%
!! TTAGGTTGAACAAAGCTTTG+TGG + chr5_1:59207642-59207661 None:intergenic 35.0%
CACCTTCATTCGATTTAACT+GGG - chr5_1:59207691-59207710 Msa0740310:intron 35.0%
AACCCAGTTAAATCGAATGA+AGG + chr5_1:59207696-59207715 None:intergenic 35.0%
TCATTCGATTTAACTGGGTT+TGG - chr5_1:59207696-59207715 Msa0740310:intron 35.0%
! TTTAACTGGGTTTGGAGTTT+CGG - chr5_1:59207704-59207723 Msa0740310:intron 35.0%
GGCTATGATACACATGTTAT+AGG - chr5_1:59207762-59207781 Msa0740310:intron 35.0%
!!! GTTTTGTTGTTGCTGAATGA+TGG + chr5_1:59207847-59207866 None:intergenic 35.0%
!!! GTTTTGTTGTTGCTGAATGA+TGG + chr5_1:59207847-59207866 None:intergenic 35.0%
TTTGAATCAAGGAATGGTGA+TGG - chr5_1:59207941-59207960 Msa0740310:intron 35.0%
!! TTGTTGAGGTTGGTTTCAAA+AGG + chr5_1:59208026-59208045 None:intergenic 35.0%
TCACATGAAGAACCATACAT+GGG + chr5_1:59208065-59208084 None:intergenic 35.0%
ATCACATGAAGAACCATACA+TGG + chr5_1:59208066-59208085 None:intergenic 35.0%
GTATGGTTCTTCATGTGATT+TGG - chr5_1:59208067-59208086 Msa0740310:intron 35.0%
!! TTTGGCGTCCTTTGATTTTA+AGG - chr5_1:59208085-59208104 Msa0740310:intron 35.0%
GAGACTAAAGTCAATAAGGG+AGG + chr5_1:59205261-59205280 None:intergenic 40.0%
!!! TTTTGGGATGTGTCAGTGAT+TGG - chr5_1:59205523-59205542 Msa0740310:CDS 40.0%
AGTTACCACGTGTTTGATGA+TGG - chr5_1:59205655-59205674 Msa0740310:CDS 40.0%
! GTTACCACGTGTTTGATGAT+GGG - chr5_1:59205656-59205675 Msa0740310:CDS 40.0%
!!! ATCTTTAAGGGTGTTTTCCC+TGG - chr5_1:59206245-59206264 Msa0740310:CDS 40.0%
!!! TCTTTAAGGGTGTTTTCCCT+GGG - chr5_1:59206246-59206265 Msa0740310:CDS 40.0%
! GATGATGATGTTTGAGGACA+TGG - chr5_1:59206273-59206292 Msa0740310:CDS 40.0%
! TTTGAGGACATGGGATTTTG+TGG - chr5_1:59206283-59206302 Msa0740310:CDS 40.0%
! CATGGGATTTTGTGGTGATT+TGG - chr5_1:59206291-59206310 Msa0740310:CDS 40.0%
!! GGTGATTTGGATGTGTTTTG+TGG - chr5_1:59206304-59206323 Msa0740310:CDS 40.0%
! GATGTGTTTTGTGGTACACT+TGG - chr5_1:59206313-59206332 Msa0740310:CDS 40.0%
! TGTGTTTTGTGGTACACTTG+GGG - chr5_1:59206315-59206334 Msa0740310:CDS 40.0%
AAGGGGATATTTCTTCTGTC+AGG - chr5_1:59206338-59206357 Msa0740310:CDS 40.0%
GAACAAACCAAGGCTAAAGA+AGG - chr5_1:59206472-59206491 Msa0740310:CDS 40.0%
AGAAGGAATTGATGCTGCAA+AGG - chr5_1:59206489-59206508 Msa0740310:CDS 40.0%
AAGATGTCAAGAGCTCAAGA+TGG - chr5_1:59206544-59206563 Msa0740310:CDS 40.0%
GTACATGCTGAAAATGATGG+AGG - chr5_1:59206576-59206595 Msa0740310:CDS 40.0%
! GAAAATGATGGAGGTTTGCA+AGG - chr5_1:59206585-59206604 Msa0740310:CDS 40.0%
!! AAGGCACAAGGCTTTGTTTA+TGG - chr5_1:59206604-59206623 Msa0740310:CDS 40.0%
!! AGGCACAAGGCTTTGTTTAT+GGG - chr5_1:59206605-59206624 Msa0740310:CDS 40.0%
TTATGGGATAATTCCCGAGA+AGG - chr5_1:59206621-59206640 Msa0740310:CDS 40.0%
TATGGGATAATTCCCGAGAA+GGG - chr5_1:59206622-59206641 Msa0740310:CDS 40.0%
CATCTGACAATCTTCGTGAA+TGG - chr5_1:59206662-59206681 Msa0740310:CDS 40.0%
! AATGGTGGAAGGATAAGGTT+CGG - chr5_1:59206680-59206699 Msa0740310:CDS 40.0%
CAAGCAGATAATGCAATTCC+AGG - chr5_1:59206739-59206758 Msa0740310:CDS 40.0%
TGTAATTCTTGCAAGGTGTG+TGG + chr5_1:59206799-59206818 None:intergenic 40.0%
ACACACCTTGCAAGAATTAC+AGG - chr5_1:59206798-59206817 Msa0740310:CDS 40.0%
TGTGTCCTGTAATTCTTGCA+AGG + chr5_1:59206806-59206825 None:intergenic 40.0%
AGAATTACAGGACACAACCT+TGG - chr5_1:59206810-59206829 Msa0740310:CDS 40.0%
GAATTACAGGACACAACCTT+GGG - chr5_1:59206811-59206830 Msa0740310:CDS 40.0%
ATCTTTAGGCAAACCGATCT+GGG + chr5_1:59206947-59206966 None:intergenic 40.0%
!! ATCGGTTTGCCTAAAGATCA+AGG - chr5_1:59206949-59206968 Msa0740310:CDS 40.0%
TCATGAGGTTTCTTGTATGG+TGG + chr5_1:59206979-59206998 None:intergenic 40.0%
TTGCGAATCTTGGCTATATC+AGG + chr5_1:59207057-59207076 None:intergenic 40.0%
GGATTCCTCTTGATTGATGA+TGG + chr5_1:59207145-59207164 None:intergenic 40.0%
CATCAATCAAGAGGAATCCT+TGG - chr5_1:59207146-59207165 Msa0740310:intron 40.0%
TGCAGTGAGTATGATGTTGA+TGG - chr5_1:59207243-59207262 Msa0740310:intron 40.0%
GCAGTGAGTATGATGTTGAT+GGG - chr5_1:59207244-59207263 Msa0740310:intron 40.0%
CAGTGAGTATGATGTTGATG+GGG - chr5_1:59207245-59207264 Msa0740310:intron 40.0%
CATTCTATCCATCCCAAGAT+TGG + chr5_1:59207328-59207347 None:intergenic 40.0%
ATCTTGGGATGGATAGAATG+AGG - chr5_1:59207328-59207347 Msa0740310:intron 40.0%
TCTTGGGATGGATAGAATGA+GGG - chr5_1:59207329-59207348 Msa0740310:intron 40.0%
GCAACCTTCTCATCAAATCA+AGG - chr5_1:59207368-59207387 Msa0740310:intron 40.0%
! TCTCCCTTGATTTGATGAGA+AGG + chr5_1:59207375-59207394 None:intergenic 40.0%
TTCTCATCAAATCAAGGGAG+AGG - chr5_1:59207374-59207393 Msa0740310:intron 40.0%
ACTTGGATTTCATTCGGAAG+AGG - chr5_1:59207406-59207425 Msa0740310:intron 40.0%
! TGCTCGCATGTGTACATTTT+CGG + chr5_1:59207465-59207484 None:intergenic 40.0%
AAGACCTATCTTGAAAGGCA+AGG + chr5_1:59207515-59207534 None:intergenic 40.0%
CTTTCAAGATAGGTCTTCCA+GGG - chr5_1:59207518-59207537 Msa0740310:intron 40.0%
!! GGACTGTTTCTGTTTCTATG+TGG + chr5_1:59207564-59207583 None:intergenic 40.0%
CCTCGGTAGCATGAAAATTA+GGG + chr5_1:59207602-59207621 None:intergenic 40.0%
ACCTCGGTAGCATGAAAATT+AGG + chr5_1:59207603-59207622 None:intergenic 40.0%
CCAGTTAAATCGAATGAAGG+TGG + chr5_1:59207693-59207712 None:intergenic 40.0%
CCACCTTCATTCGATTTAAC+TGG - chr5_1:59207690-59207709 Msa0740310:intron 40.0%
! TAAGGTCGCTGATCATTTTC+TGG + chr5_1:59207737-59207756 None:intergenic 40.0%
GTGTATCATAGCCTGACATA+AGG + chr5_1:59207755-59207774 None:intergenic 40.0%
TCCTGTTGTTGCTGAATGAT+GGG + chr5_1:59207912-59207931 None:intergenic 40.0%
! AAATCAGTTTGACCGGTTCA+AGG - chr5_1:59207989-59208008 Msa0740310:intron 40.0%
GGTTTCAAAAGGAGAGTTCA+TGG + chr5_1:59208015-59208034 None:intergenic 40.0%
AAGGAGGATCTACAACTACA+AGG - chr5_1:59208104-59208123 Msa0740310:intron 40.0%
!! CAGGGTGTTGAGCATTATCT+TGG + chr5_1:59205148-59205167 None:intergenic 45.0%
GAGAAAAGACAGACAGAGCA+GGG + chr5_1:59205166-59205185 None:intergenic 45.0%
AGAGAAAAGACAGACAGAGC+AGG + chr5_1:59205167-59205186 None:intergenic 45.0%
TAGACCCATCATCAAACACG+TGG + chr5_1:59205663-59205682 None:intergenic 45.0%
!! GCTTTTGAAAATTGGGTGGC+TGG - chr5_1:59205977-59205996 Msa0740310:CDS 45.0%
GTGGCTGGTGAATCTGAATT+AGG - chr5_1:59205992-59206011 Msa0740310:CDS 45.0%
! TTTTGTGGTACACTTGGGGA+AGG - chr5_1:59206319-59206338 Msa0740310:CDS 45.0%
TTTGTGGTACACTTGGGGAA+GGG - chr5_1:59206320-59206339 Msa0740310:CDS 45.0%
GCGACTGAAAGAACAAACCA+AGG - chr5_1:59206462-59206481 Msa0740310:CDS 45.0%
GAATTGATGCTGCAAAGGCA+AGG - chr5_1:59206494-59206513 Msa0740310:CDS 45.0%
AATTCCCGAGAAGGGAAAAC+CGG - chr5_1:59206630-59206649 Msa0740310:CDS 45.0%
ACGAAGATTGTCAGATGCTC+CGG + chr5_1:59206659-59206678 None:intergenic 45.0%
CTGACAATCTTCGTGAATGG+TGG - chr5_1:59206665-59206684 Msa0740310:CDS 45.0%
! CAATCTTCGTGAATGGTGGA+AGG - chr5_1:59206669-59206688 Msa0740310:CDS 45.0%
! TCGTGAATGGTGGAAGGATA+AGG - chr5_1:59206675-59206694 Msa0740310:CDS 45.0%
! AGGATAAGGTTCGGTTCGAT+AGG - chr5_1:59206689-59206708 Msa0740310:CDS 45.0%
! AAGGTTCGGTTCGATAGGAA+TGG - chr5_1:59206694-59206713 Msa0740310:CDS 45.0%
TGATACTTGGATATGGCAGC+TGG + chr5_1:59206721-59206740 None:intergenic 45.0%
GCAATTCCAGGGAAGAATGA+TGG - chr5_1:59206751-59206770 Msa0740310:CDS 45.0%
TTGCATCCATCATTCTTCCC+TGG + chr5_1:59206760-59206779 None:intergenic 45.0%
TGCTGATAAGAGAGAACCCA+AGG + chr5_1:59206830-59206849 None:intergenic 45.0%
TCTTTAGGCAAACCGATCTG+GGG + chr5_1:59206946-59206965 None:intergenic 45.0%
GATCTTTAGGCAAACCGATC+TGG + chr5_1:59206948-59206967 None:intergenic 45.0%
! GAGGTTTCTTGTATGGTGGA+GGG + chr5_1:59206975-59206994 None:intergenic 45.0%
TGAGGTTTCTTGTATGGTGG+AGG + chr5_1:59206976-59206995 None:intergenic 45.0%
!! TTGATTGATGATGGCAAGCC+AGG + chr5_1:59207136-59207155 None:intergenic 45.0%
GCTTGCCATCATCAATCAAG+AGG - chr5_1:59207137-59207156 Msa0740310:intron 45.0%
TGGATAAAGTTCTCGAGCCA+AGG + chr5_1:59207166-59207185 None:intergenic 45.0%
! TATGATGTTGATGGGGCTGA+CGG - chr5_1:59207252-59207271 Msa0740310:intron 45.0%
CGAGTCAAACTTTGATGTGG+AGG - chr5_1:59207275-59207294 Msa0740310:intron 45.0%
TCATCCATCCAATCTTGGGA+TGG - chr5_1:59207317-59207336 Msa0740310:intron 45.0%
CTATCCATCCCAAGATTGGA+TGG + chr5_1:59207324-59207343 None:intergenic 45.0%
CTTGGGATGGATAGAATGAG+GGG - chr5_1:59207330-59207349 Msa0740310:intron 45.0%
TGATGAGAAGGTTGCTGAAC+TGG + chr5_1:59207363-59207382 None:intergenic 45.0%
CCTGGAAGACCTATCTTGAA+AGG + chr5_1:59207520-59207539 None:intergenic 45.0%
CCTTTCAAGATAGGTCTTCC+AGG - chr5_1:59207517-59207536 Msa0740310:intron 45.0%
AGAAACAGAAACAGTCCTGC+AGG - chr5_1:59207567-59207586 Msa0740310:intron 45.0%
AGAAACAGTCCTGCAGGTTA+TGG - chr5_1:59207573-59207592 Msa0740310:intron 45.0%
! CCCTAATTTTCATGCTACCG+AGG - chr5_1:59207599-59207618 Msa0740310:intron 45.0%
GCAGGCTGAACTGTAGAATT+AGG + chr5_1:59207660-59207679 None:intergenic 45.0%
GAAGGTGGAACTAAACTAGC+AGG + chr5_1:59207678-59207697 None:intergenic 45.0%
ATGATCAGCGACCTTATGTC+AGG - chr5_1:59207741-59207760 Msa0740310:intron 45.0%
GTCCTGTTGTTGCTGAATGA+TGG + chr5_1:59207913-59207932 None:intergenic 45.0%
!! GAATCAAGGAATGGTGATGG+AGG - chr5_1:59207944-59207963 Msa0740310:intron 45.0%
!!! GGCAAACTTTTTTACTCGCG+AGG - chr5_1:59207965-59207984 Msa0740310:intron 45.0%
GCGAGGAAAATCAGTTTGAC+CGG - chr5_1:59207982-59208001 Msa0740310:intron 45.0%
!! GGCGTCCTTTGATTTTAAGG+AGG - chr5_1:59208088-59208107 Msa0740310:intron 45.0%
GAGGATCTACAACTACAAGG+AGG - chr5_1:59208107-59208126 Msa0740310:intron 45.0%
CTACAACTACAAGGAGGAGT+AGG - chr5_1:59208113-59208132 Msa0740310:intron 45.0%
ACTACAAGGAGGAGTAGGAA+TGG - chr5_1:59208118-59208137 Msa0740310:intron 45.0%
TTGTGGTACACTTGGGGAAG+GGG - chr5_1:59206321-59206340 Msa0740310:CDS 50.0%
TGGATGTGGATGAGCTTGAG+CGG - chr5_1:59206410-59206429 Msa0740310:CDS 50.0%
ATGGAGGTTTGCAAGGCACA+AGG - chr5_1:59206592-59206611 Msa0740310:CDS 50.0%
TCTTGCAAGGTGTGTGGAGT+TGG + chr5_1:59206793-59206812 None:intergenic 50.0%
AGGCGTTTCCCATTGGAGAA+GGG - chr5_1:59206877-59206896 Msa0740310:CDS 50.0%
GAGGATTGCCCTTCTCCAAT+GGG + chr5_1:59206888-59206907 None:intergenic 50.0%
!! GATAACGGGGGGCAATAATC+TGG + chr5_1:59207186-59207205 None:intergenic 50.0%
CGGCGAGTCAAACTTTGATG+TGG - chr5_1:59207272-59207291 Msa0740310:intron 50.0%
GGGAGAGGTTGTCACAAACT+TGG - chr5_1:59207389-59207408 Msa0740310:intron 50.0%
CTCGCCTTGCCTTTCAAGAT+AGG - chr5_1:59207508-59207527 Msa0740310:intron 50.0%
! AACTGGGTTTGGAGTTTCGG+AGG - chr5_1:59207707-59207726 Msa0740310:intron 50.0%
!! GCTGAATGATGGGCTGAGAA+AGG + chr5_1:59207836-59207855 None:intergenic 50.0%
!! GCTGAATGATGGGCTGAGAA+AGG + chr5_1:59207836-59207855 None:intergenic 50.0%
!! GCTGAATGATGGGCTGAGAA+AGG + chr5_1:59207836-59207855 None:intergenic 50.0%
GCCCATCATTCAGCAACAAC+AGG - chr5_1:59207842-59207861 Msa0740310:intron 50.0%
! GAGAGTTCATGGCCTTGAAC+CGG + chr5_1:59208004-59208023 None:intergenic 50.0%
CAGGCAAACCGAGCCAGATT+CGG - chr5_1:59206357-59206376 Msa0740310:CDS 55.0%
TCATCCTCGACCACCGAATC+TGG + chr5_1:59206373-59206392 None:intergenic 55.0%
ATGTGGATGAGCTTGAGCGG+AGG - chr5_1:59206413-59206432 Msa0740310:CDS 55.0%
ATGAGCTTGAGCGGAGGATG+TGG - chr5_1:59206419-59206438 Msa0740310:CDS 55.0%
GGCAAGGCAGTCTCAAGAAC+AGG - chr5_1:59206510-59206529 Msa0740310:CDS 55.0%
AGTCTCAAGAACAGGCGAGG+AGG - chr5_1:59206518-59206537 Msa0740310:CDS 55.0%
!!! GTCACCGGTTTTCCCTTCTC+GGG + chr5_1:59206637-59206656 None:intergenic 55.0%
!!! GGTCACCGGTTTTCCCTTCT+CGG + chr5_1:59206638-59206657 None:intergenic 55.0%
GAGAAGGGAAAACCGGTGAC+CGG - chr5_1:59206637-59206656 Msa0740310:CDS 55.0%
TTGTCAGATGCTCCGGTCAC+CGG + chr5_1:59206652-59206671 None:intergenic 55.0%
! AATGGGAAACGCCTCTGAGG+AGG + chr5_1:59206871-59206890 None:intergenic 55.0%
!! TCCTCAGAGGCGTTTCCCAT+TGG - chr5_1:59206870-59206889 Msa0740310:CDS 55.0%
TCCAATGGGAAACGCCTCTG+AGG + chr5_1:59206874-59206893 None:intergenic 55.0%
! GAGGCGTTTCCCATTGGAGA+AGG - chr5_1:59206876-59206895 Msa0740310:CDS 55.0%
GGAGGATTGCCCTTCTCCAA+TGG + chr5_1:59206889-59206908 None:intergenic 55.0%
AGAAGGGCAATCCTCCACCA+TGG - chr5_1:59206893-59206912 Msa0740310:CDS 55.0%
GGTGGAGGGCCTTGATCTTT+AGG + chr5_1:59206961-59206980 None:intergenic 55.0%
CCTCACGAGCTTGCGAATCT+TGG + chr5_1:59207067-59207086 None:intergenic 55.0%
CCAAGATTCGCAAGCTCGTG+AGG - chr5_1:59207064-59207083 Msa0740310:intron 55.0%
AAGCCAGGTTGCGCTTTCCT+TGG + chr5_1:59207121-59207140 None:intergenic 55.0%
TATTGCCCCCCGTTATCCTC+TGG - chr5_1:59207189-59207208 Msa0740310:intron 55.0%
TACCTCCGCCAGAGGATAAC+GGG + chr5_1:59207200-59207219 None:intergenic 55.0%
GTACCTCCGCCAGAGGATAA+CGG + chr5_1:59207201-59207220 None:intergenic 55.0%
! TTATCCTCTGGCGGAGGTAC+TGG - chr5_1:59207201-59207220 Msa0740310:intron 55.0%
!! TGGCGGAGGTACTGGTTCTA+TGG - chr5_1:59207209-59207228 Msa0740310:intron 55.0%
GCTTCGCTGTAAGCGCATTG+AGG + chr5_1:59207489-59207508 None:intergenic 55.0%
TTAGGGTCGCCATAACCTGC+AGG + chr5_1:59207585-59207604 None:intergenic 55.0%
! GGGTTTGGAGTTTCGGAGGA+CGG - chr5_1:59207711-59207730 Msa0740310:intron 55.0%
GCAAACCGAGCCAGATTCGG+TGG - chr5_1:59206360-59206379 Msa0740310:CDS 60.0%
CTCGACCACCGAATCTGGCT+CGG + chr5_1:59206368-59206387 None:intergenic 60.0%
AGCTTGAGCGGAGGATGTGG+AGG - chr5_1:59206422-59206441 Msa0740310:CDS 60.0%
GCTTGAGCGGAGGATGTGGA+GGG - chr5_1:59206423-59206442 Msa0740310:CDS 60.0%
GGCAGTCTCAAGAACAGGCG+AGG - chr5_1:59206515-59206534 Msa0740310:CDS 60.0%
GGTGTGTGGAGTTGGACCGA+TGG + chr5_1:59206785-59206804 None:intergenic 60.0%
AGCACTGCGATCCTCCTCAG+AGG - chr5_1:59206857-59206876 Msa0740310:CDS 60.0%
AGGGCAATCCTCCACCATGG+TGG - chr5_1:59206896-59206915 Msa0740310:CDS 60.0%
CACCAGTCTTCAGTCCCGGT+TGG + chr5_1:59206922-59206941 None:intergenic 60.0%
CAACCGGGACTGAAGACTGG+TGG - chr5_1:59206920-59206939 Msa0740310:CDS 60.0%
GAAGACTGGTGGCCCCAGAT+CGG - chr5_1:59206931-59206950 Msa0740310:CDS 60.0%
! CAGCCAAGGAAAGCGCAACC+TGG - chr5_1:59207115-59207134 Msa0740310:intron 60.0%
ACCTCCGCCAGAGGATAACG+GGG + chr5_1:59207199-59207218 None:intergenic 60.0%
AGAACCAGTACCTCCGCCAG+AGG + chr5_1:59207208-59207227 None:intergenic 60.0%
!! CGAGCCAGATTCGGTGGTCG+AGG - chr5_1:59206366-59206385 Msa0740310:CDS 65.0%
CCTCCACCATGGTGGCCAAC+CGG - chr5_1:59206904-59206923 Msa0740310:CDS 65.0%
CTCCACCATGGTGGCCAACC+GGG - chr5_1:59206905-59206924 Msa0740310:CDS 65.0%
! TCAGTCCCGGTTGGCCACCA+TGG + chr5_1:59206913-59206932 None:intergenic 65.0%
GGCCAACCGGGACTGAAGAC+TGG - chr5_1:59206917-59206936 Msa0740310:CDS 65.0%
GGGCCACCAGTCTTCAGTCC+CGG + chr5_1:59206926-59206945 None:intergenic 65.0%
TGCCCCCCGTTATCCTCTGG+CGG - chr5_1:59207192-59207211 Msa0740310:intron 65.0%
!! CTCCGCCAGAGGATAACGGG+GGG + chr5_1:59207197-59207216 None:intergenic 65.0%
! CCTCCGCCAGAGGATAACGG+GGG + chr5_1:59207198-59207217 None:intergenic 65.0%
! CCGGTTGGCCACCATGGTGG+AGG + chr5_1:59206907-59206926 None:intergenic 70.0%
! GTCCCGGTTGGCCACCATGG+TGG + chr5_1:59206910-59206929 None:intergenic 70.0%
CCCCCGTTATCCTCTGGCGG+AGG - chr5_1:59207195-59207214 Msa0740310:intron 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 59205091 59208184 59205091 ID=Msa0740310;Name=Msa0740310
chr5_1 mRNA 59205091 59208184 59205091 ID=Msa0740310-mRNA-1;Parent=Msa0740310;Name=Msa0740310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|0.33|1|1|6|0|654
chr5_1 exon 59208179 59208184 59208179 ID=Msa0740310-mRNA-1:exon:17044;Parent=Msa0740310-mRNA-1
chr5_1 exon 59207612 59207618 59207612 ID=Msa0740310-mRNA-1:exon:17043;Parent=Msa0740310-mRNA-1
chr5_1 exon 59207528 59207534 59207528 ID=Msa0740310-mRNA-1:exon:17042;Parent=Msa0740310-mRNA-1
chr5_1 exon 59207388 59207393 59207388 ID=Msa0740310-mRNA-1:exon:17041;Parent=Msa0740310-mRNA-1
chr5_1 exon 59207145 59207152 59207145 ID=Msa0740310-mRNA-1:exon:17040;Parent=Msa0740310-mRNA-1
chr5_1 exon 59205091 59207021 59205091 ID=Msa0740310-mRNA-1:exon:17039;Parent=Msa0740310-mRNA-1
chr5_1 CDS 59208179 59208184 59208179 ID=Msa0740310-mRNA-1:cds;Parent=Msa0740310-mRNA-1
chr5_1 CDS 59207612 59207618 59207612 ID=Msa0740310-mRNA-1:cds;Parent=Msa0740310-mRNA-1
chr5_1 CDS 59207528 59207534 59207528 ID=Msa0740310-mRNA-1:cds;Parent=Msa0740310-mRNA-1
chr5_1 CDS 59207388 59207393 59207388 ID=Msa0740310-mRNA-1:cds;Parent=Msa0740310-mRNA-1
chr5_1 CDS 59207145 59207152 59207145 ID=Msa0740310-mRNA-1:cds;Parent=Msa0740310-mRNA-1
chr5_1 CDS 59205091 59207021 59205091 ID=Msa0740310-mRNA-1:cds;Parent=Msa0740310-mRNA-1
Gene Sequence

>Msa0740310

ATGAATTTACCACTTTTCATTGATTGGTTTAAAGGGTGTTTTCCCTGGGAAAAGATGATGATGTTTGAGGACATGGGATTTTGTGGTGATTTGGATGTGTTTTGTGGTACACTTGGGGAAGGGGATATTTCTTCTGTCAGGCAAACCGAGCCAGATTCGGTGGTCGAGGATGATTATAGTGATGAAGAAATGGATGTGGATGAGCTTGAGCGGAGGATGTGGAGGGACAAAATGCGTCTCAAGCGACTGAAAGAACAAACCAAGGCTAAAGAAGGAATTGATGCTGCAAAGGCAAGGCAGTCTCAAGAACAGGCGAGGAGGAAAAAGATGTCAAGAGCTCAAGATGGAATATTGAAGTACATGCTGAAAATGATGGAGGTTTGCAAGGCACAAGGCTTTGTTTATGGGATAATTCCCGAGAAGGGAAAACCGGTGACCGGAGCATCTGACAATCTTCGTGAATGGTGGAAGGATAAGGTTCGGTTCGATAGGAATGGTCCAGCTGCCATATCCAAGTATCAAGCAGATAATGCAATTCCAGGGAAGAATGATGGATGCAATTCCATCGGTCCAACTCCACACACCTTGCAAGAATTACAGGACACAACCTTGGGTTCTCTCTTATCAGCACTTATGCAGCACTGCGATCCTCCTCAGAGGCGTTTCCCATTGGAGAAGGGCAATCCTCCACCATGGTGGCCAACCGGGACTGAAGACTGGTGGCCCCAGATCGGTTTGCCTAAAGATCAAGGCCCTCCACCATACAAGAAACCTCATGACTTGAAAAAAGCATGGAAAGTCGGTGTTCTAACTGCTGTTATCAAGCATATGTCTCCTGATATAGCCAAGATTCGCAAGCTCGTGAGGCAGTCCAAATGCCTTCAAGATAAAATGACAGCCAAGGAAAGCGCAACCTGGCTTGCCATCATCAATCAAGAGGAATCCTTGGCTCGAGAACTTTATCCAGATTATTGCCCCCCGTTATCCTCTGGCGGAGGTACTGGTTCTATGGTCATCAACGATTGCAGTGAGTATGATGTTGATGGGGCTGACGGCGAGTCAAACTTTGATGTGGAGGACCGAAAACCCGAAAATCTTCATCCATCCAATCTTGGGATGGATAGAATGAGGGGAAGCTTTCCAGTTCAGCAACCTTCTCATCAAATCAAGGGAGAGGTTGTCACAAACTTGGATTTCATTCGGAAGAGGAAGATCTCTAACGACTTCAACATGATGATGGAACCGAAAATGTACACATGCGAGCATCCTCAATGCGCTTACAGCGAAGCTCGCCTTGCCTTTCAAGATAGGTCTTCCAGGGACAATCATCAATTGAATTGTCCACATAGAAACAGAAACAGTCCTGCAGGTTATGGCGACCCTAATTTTCATGCTACCGAGGTTAAGCCAGTTATTTTCCCACAAAGCTTTGTTCAACCTAATTCTACAGTTCAGCCTGCTAGTTTAGTTCCACCTTCATTCGATTTAACTGGGTTTGGAGTTTCGGAGGACGGCCAGAAAATGATCAGCGACCTTATGTCAGGCTATGATACACATGTTATAGGAAACAACAATGCAAGTTCCACCAATTGTGTAGTTATTGAAAATCAAAACCTTTCTCAGCCCATCATTCAGCAACAACAAAACCTTTCTCAGCCCATCATTCAGCAACAACAAAACCTTTCTCAGCCCATCATTCAGCAACAACAGGACAATTTCTTTTTGAATCAAGGAATGGTGATGGAGGCAAACTTTTTTACTCGCGAGGAAAATCAGTTTGACCGGTTCAAGGCCATGAACTCTCCTTTTGAAACCAACCTCAACAACAACAATAATATGCATCCCATGTATGGTTCTTCATGTGATTTGGCGTCCTTTGATTTTAAGGAGGATCTACAACTACAAGGAGGAGTAGGAATGGATGCACTTTACAAACAACAAGATGTTTCAATATGGAACTACTGA
Protein sequence

>Msa0740310

MNLPLFIDWFKGCFPWEKMMMFEDMGFCGDLDVFCGTLGEGDISSVRQTEPDSVVEDDYSDEEMDVDELERRMWRDKMRLKRLKEQTKAKEGIDAAKARQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWWKDKVRFDRNGPAAISKYQADNAIPGKNDGCNSIGPTPHTLQELQDTTLGSLLSALMQHCDPPQRRFPLEKGNPPPWWPTGTEDWWPQIGLPKDQGPPPYKKPHDLKKAWKVGVLTAVIKHMSPDIAKIRKLVRQSKCLQDKMTAKESATWLAIINQEESLARELYPDYCPPLSSGGGTGSMVINDCSEYDVDGADGESNFDVEDRKPENLHPSNLGMDRMRGSFPVQQPSHQIKGEVVTNLDFIRKRKISNDFNMMMEPKMYTCEHPQCAYSEARLAFQDRSSRDNHQLNCPHRNRNSPAGYGDPNFHATEVKPVIFPQSFVQPNSTVQPASLVPPSFDLTGFGVSEDGQKMISDLMSGYDTHVIGNNNASSTNCVVIENQNLSQPIIQQQQNLSQPIIQQQQNLSQPIIQQQQDNFFLNQGMVMEANFFTREENQFDRFKAMNSPFETNLNNNNNMHPMYGSSCDLASFDFKEDLQLQGGVGMDALYKQQDVSIWNY*